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Publications list

Found 2467 results

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2012
Edwards AC, Coull MC, Sinclair AH, Walker RL, Watson CA.  2012.  Elemental status (Cu, Mo, Co, B, S, and Zn) of Scottish agricultural soils compared with a soil-based risk assessment. Soil Use and Management. 28:167-176.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2012.  Elevational advance of alpine plant communities is buffered by herbivory. Journal of Vegetation Science. 23:617-625.
Yelina NE, Choi K, Chelysheva L, Macaulay M, de Snoo B, Wijnker E, Miller N, Drouaud J, Grelon M, Copenhaver GP et al..  2012.  Epigenetic remodeling of meiotic crossover frequency in arabidopsis thaliana DNA methyltransferase mutants. PLoS Genetics. 8:e1002844.
Shibu ME, Matthews RB, Bakam I, Moffat AJ, Baggaley NJ.  2012.  Estimating greenhouse gas abatement potential of biomass crops in Scotland under various management options. Biomass and Bioenergy. 47:211-227.
Schmidt S, Bengough AG, Gregory PJ, Grinev DV, Otten W.  2012.  Estimating root-soil contact from 3-D X-ray microtomographs. European Journal of Soil Science. 63:776-786.
Schultz L, Cogan NOI, McLean K, Dale MFB, Bryan GJ, Forster JW, Slater AT.  2012.  Evaluation and implementation of a potential diagnostic molecular marker for H1-conferred potato cyst nematode resistance in potato (Solanum tuberosum L.). Plant Breeding. 131:315-321.
Ferreira LMM, Celaya R, Santos AS, Guedes CMV, Rodrigues MAM, Mayes RW, Osoro K.  2012.  Evaluation of long-chain alcohols as diet composition markers in goats grazing heathland areas. Animal. 6:683-0692.
Vetukuri RR, Asman AKM, Tellgren-Roth C, Jahan SN, Reimegard J, Fogelqvist J, Savenkov E, Soderbom F, Avrova AO, Whisson SC et al..  2012.  Evidence for small RNAs homologous to effector-encoding genes and transposable elements in the oomycete Phytophthora infestans. PLoS One.. 7:e51399-e51399.
Semashko MA, Gonzalez I, Shaw J, Leonova OG, Popenko VI, Taliansky ME, Canto T, Kalinina N.  2012.  The extreme N-terminal domain of a hordeivirus TGB1 movement protein mediates its localization to the nucleolus and interaction with fibrillarin. Biochemie. 94:1180-1188.
Devos Y, Hails RS, Messean A, Perry JN, Squire GR.  2012.  Feral genetically modified herbicide tolerant oilseed rape from seed import spills: are concerns scientifically justified? Transgenic Research. 21:1-21.
Meharg AA, Edwards KJ, Schofield JE, Raab A, Feldmann J, Moran A, Bryant CL, Thornton B, Dawson JJC.  2012.  First comprehensive peat depositional records for tin, lead and copper associated with the antiquity of Europe’s largest cassiterite deposits. Journal of Archaeological Science. 39:717-727.
Worrall F, Davies H, Bhogal A, Lilly A, Evans M, Turner K, Burt T, Barraclough D, Smith P, Merrington G.  2012.  The flux of DOC from the UK - predicting the role of soils, land use and net watershed losses. Journal of Hydrology. 448-449:149-150.
Bellingham M, McKinnell C, Fowler PA, Amezaga MR, Zhang Z, Rhind SM, Cotinot C, Mandon-Pepin B, Evans NP, Sharpe RM.  2012.  Foetal and post-natal exposure of sheep to sewage sludge chemicals disrupts sperm production in adulthood in a subset of animals. International Journal of Andrology. 35:317-329.
Torronen R, McDougall GJ, Dobson G, Stewart D, Hellström J, Mattila P, Pihlava JM, Karjalainen RO.  2012.  Fortification of blackcurrant juice with crowberry: impact on polyphenol composition, urinary phenoloic metabolites, and postprandial glycemic response in healthy subjects. Journal of Functional Foods. 4:746-756.
Schoeb C, Butterfield BJ, Pugnaire FI.  2012.  Foundation species influence trait-based community assembly. New Phytologist. 196:824-834.
Sprent JI.  2012.  From pure to applied: legume research reports from down under. New Phytologist. 194:318-320.
Farre A, Cuadrado A, Lacasa-Benito I, Cistue L, Schubert I, Comadran J, Jansen J, Romagosa I.  2012.  Genetic characterization of a reciprocal translocation present in a widely grown barley variety. Molecular Breeding. 30:1109-1119.
McNally RR, Toth IK, Cock PJA, Pritchard L, Hedley PE, Morris JA, Zhao YF, Sundin GW.  2012.  Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. Molecular Plant Pathology. 13:160-173.
Jing R, Ambrose MA, Knox MR, Smykal P, Hybl M, Ramos A, Caminero C, Burstin J, Duc G, van Soest LJM et al..  2012.  Genetic diversity in European Pisum germplasm collections. Theoretical and Applied Genetics. 125:367-380.
Tomaszewski C, Byrne S, Foito A, Kildea S, Kopecky D, Dolezel J, Heslop-Harrison JS, Stewart D, Barth S.  2012.  Genetic linkage mapping in an F2 perennial ryegrass population saturated with DArT markers. Plant Breeding. 131:345-349.
Begg GS, Wishart J, Young MW, Squire GR, Iannetta PPM.  2012.  Genetic structure among arable populations of Capsella bursa-pastoris L. is linked to functional traits and in-field conditions. Ecography. 35:446-457.
Cooke DEL, Cano LM, Raffaele S, Bain RA, Cooke LR, Etherington GJ, Deahl KL, Farrer RA, Gilroy EM, Goss EM et al..  2012.  Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathogens. 8:e1002940.
Lamour KH, Mudge J, Gobena D, Hurtado-Gonzales OP, Schmutz J, Kuo A, Miller NA, Rice BJ, Raffaele S, Cano LM et al..  2012.  Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen phytophthora capsici. Molecular Plant-Microbe Interactions. 25:1350-1360.
Wang DP, Qi MS, Calla B, Korban SS, Clough SJ, Cock PJA, Sundin GW, Toth IK, Zhao YF.  2012.  Genome-wide identification of genes regulated by the Rcs phosphorelay system in Erwinia amylovora. Molecular Plant-Microbe Interactions. 25:6-17.
Limpens J, Granath G, Aerts R, Heijmans MMPD, Sheppard LJ, Bragazza L, Williams BL, Rydin H, Bubier J, Moore T et al..  2012.  Glasshouse vs field experiments: do they yield ecologically similar results for assessing N impacts on peat mosses? New Phytologist. 195:408-418.
Bjorgsen Gurung A, Wymann von Dach S, Price MF, Aspinall R, Balsiger J, Baron JS, Sharma E, Greenwood G, Kohler T.  2012.  Global change and the world's mountains: research needs and emerging themes for sustainable development. A synthesis from the 2010 Perth II conference. Mountain Research and Development. 32:S47-S54.
Aderhold A, Husmeier D, Lennon JJ, Beale CM, Smith VA.  2012.  Hierarchical Bayesian models in ecology: Reconstructing species interaction networks from non-homogeneous species abundance data. Ecological Informatics. 11:55-64.
Birkel C, Soulsby C, Tetzlaff D, Dunn SM, Spezia L.  2012.  High-frequency storm event isotope sampling reveals time-variant transit time distributions and influence of diurnal cycles. Hydrological Processes. 26:308-316.
Streitner C, Köster T, Simpson CG, Shaw P, Danisman S, Brown JWS, Staiger D.  2012.  An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Research. 40:11240-11255.
Saunders DGO, Breen S, Win J, Schornack S, Hein I, Bozkurt TO, Champouret N, Vleeshouwers GAA, Birch PRJ, Gilroy EM et al..  2012.  Host protein BSL1 associates with phytophthora infestans RXLR effector AVR2 and the solanum demissum immune receptor R2 to mediate disease resistance. The Plant Cell. 24:3420-3434.
Wawra S, Bain J, Durward E, de Bruijn I, Minor KL, Matena A, Lobach L, Whisson SC, Bayer P, Porter AJ et al..  2012.  Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner. Proceedings of the National Academy of Sciences. 109:2096-2101.
Buckland ST, Baillie SR, Dick JM, Elston DA, Magurran AE, Scott EM, Smith RI, Somerfield PJ, Studeny AC, Watt A.  2012.  How should regional biodiversity be monitored? Environmental and Ecological Statistics. 19:601-626.
Sausse C, Colbach N, Young MW, Squire GR.  2012.  How to manage the impact of gene flow on oilseed rape grain quality? Simulation case studies of three contrasted landscapes European Journal of Agronomy. 38:32-42.
van Dijk JP, Cankar K, Hendriksen PJM, Beenen HGJ, Zhu M, Scheffer S, Shepherd LVT, Stewart D, Davies HV, Leifert C et al..  2012.  The identification and interpretation of differences in the transcriptomes of organically and conventionally grown potato tubers. Journal of Agricultural and Food Chemistry. 60:2090-2101.
Jupe F, Pritchard L, Etherington G, MacKenzie K, Cock PJA, Wright F, Sharma SK, Bolser D, Bryan GJ, Jones J et al..  2012.  Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics. 13:1-14.
Fowler PA, Bellingham M, Sinclair KD, Evans NP, Pocar P, Fischer B, Schaedlich K, Schmidt JS, Amazegal MR, Bhattacharya S et al..  2012.  Impact of endocrine-disrupting compounds (EDCs) on female reproductive health. Molecular and Cellular Endocrinology. 355:231-239.
Cooksley SL, Brewer MJ, Donnelly D, Spezia L, Tree A.  2012.  Impacts of artificial structures on the freshwater pearl mussel Margaritifera margaritifera in the River Dee, Scotland. Aquatic Conservation: Marine and Freshwater Ecosystems. 22:318-330.
Phoenix GK, Emmett BBAAJ, Caporn SJM, Dise NB, Helliwell RC, Jones L, Leake JR, Leith ID, Sheppard LJ, Sowerby A et al..  2012.  Impacts of atmospheric nitrogen deposition: responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments. Global Change Biology. 18:1197-1215.
Purse BV, Falconer D, Sullivan MJ, Carpenter S, Mellor PS, Piertney SB, Mordue AJ, Albon SD, Gunn GJ, Blackwell A.  2012.  Impacts of climate, host and landscape factors on Culicoides species in Scotland. Medical and Veterinary Entomology. 26:168-177.
Addy S, Cooksley SL, Sime I.  2012.  Impacts of flow regulation on freshwater pearl mussel (Margaritifera margaritifera) habitat in a Scottish montane river. Science of the Total Environment. 432:318-328.
Zakhrabekova S, Gough SP, Braumann I, Muller AH, Lundqvist J, Ahmann K, Dockter C, Matyszczak I, Kurowska M, Druka A et al..  2012.  Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:4326-4331.
Dove H, Milne JA, Lamb CS, Sibbald AM, McCormack HA.  2012.  The influence of herbage mass and supplementary feeding on nutrient flows and animal performance in grazing, lactating ewes. Journal of Agricultural Science. 150:644-662.
Poggio L, Soille P.  2012.  Influence of pit removal methods on river network position. Hydrological Processes. 26:1984-1990.
Swanston JS, Middlefell-Williams J.  2012.  The influence of steep regime and germination period on the malting properties of some hull-less barley lines. Journal of the Institute of Brewing. 118:186-191.
Leonardi G, Vahter M, Clemens F, Goessler W, Gurzau E, Hemminiki K, Hough RL, Koppova K, Kumar R, Rudnai P et al..  2012.  Inorganic arsenic and basal cell carcinoma in areas of Hungary, Romania, and Slovakia: A case-control study. Environmental Health Perspectives. 120:721-726.
Balana BB, Lago M, Baggaley N, Castellazzi M, Sample J, Stutter M, Slee B, Vinten AJA.  2012.  Integrating economic and biophysical data in assessing cost-effectiveness of buffer strip placement. Journal of Environmental Quality. 41:380-388.
Stott AW, Ahmadi BV, Dwyer CM, Kupiec B, Morgan-Davies C, Milne CE, Ringrose S, Goddard P, Phillips K, Waterhouse A.  2012.  Interactions between profit and welfare on extensive sheep farms. Animal Welfare. 21:57-64.
Stockan JA, Langan SJ, Young MR.  2012.  Investigating riparian margins for vegetation patterns and plant-environment relationships in northeast Scotland. Journal of Environmental Quality. 41:364-372.
Dobson G, Shrestha M, Hilz H, Karjalainen RO, McDougall GJ, Stewart D.  2012.  Lipophilic components in black currant seed and pomace extracts. European Journal of Lipid Science and Technology. 114:575-582.
Hossain MS, Liao JQ, James EK, Sato S, Tabata S, Jurkiewicz A, Madsen LH, Stougaard J, Ross L, Szczyglowski K.  2012.  Lotus japonicus ARPC1 is required for rhizobial infection. Plant Physiology. 160:917-928.
Mann AN, O'Reilly-Wapstra JM, Iason GR, Sanson G, Davies NW, Tilyard P, Williams D, Potts BM.  2012.  Mammalian herbivores reveal marked genetic divergence between populations of an endangered plant species. Oikos. 121:268-276.
Carpenter D, Sherlock E, Jones DT, Chiminoides J, Writer T, Neilson R, Boag B, Keith AM, Eggleton P.  2012.  Mapping of earthworm distribution for the British Isles and Eire highlights the under-recording of an ecologically important group. Biodiversity and Conservation. 21:475-485.
Deng W, Jeng DS, Toorop PE, Squire GR, Iannetta PPM.  2012.  A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris L. Medic (shepherd's purse). Annals of Botany. 109:419-427.
Brown EM, Gill CIR, McDougall GJ, Stewart D.  2012.  Mechanisms underlying the anti-proliferative effects of berry components in in vitro models of colon cancer. Current Pharmaceutical Biotechnology. 13:200-209.
Stephenson T, Reid E, Avery LM, Jefferson B.  2012.  Media surface properties and the development of nitrifying biofilms in mixed cultures for wastewater treatment. Process Safety and Environmental Protection. Published online. 91:321-324.
Tyson T, O'Mahony ZG, Skelton M, Daly MB, Jones JT, Elsworth B, Phillips M, Blaxter M, Burnell AM.  2012.  A molecular analysis of desiccation tolerance mechanisms in the anhydrobiotic nematode Panagrolaimus superbus using expressed sequenced tags. BMC Research Notes. 5:e68.
Semashko MA, Rakitina DV, Gonzalez I, Canto T, Kalinina N, Taliansky ME.  2012.  Movement protein of hordeivirus interacts in vitro and in vivo with coilin, a major structural protein of Cajal bodies. Doklady Biochemistry and Biophysics. 442:57-60.
Sugden D, Werritty A, Webb J, Caldwell E, Campbell CD, Dlugolecki A, Hanley N, Kerr A.  2012.  Multi-level governance: opportunities and barriers in moving to a low-carbon Scotland. Earth and Environmental Science, Transactions of the Royal Society of Edinburgh. 103:175-186.
Elliott GN, Thomas N, MacRae M, Campbell CD, Ogden ID, Singh BK.  2012.  Multiplex T-RFLP allows for increased target number and specificity: Detection of Salmonella enterica and six species of Listeria in a single test. PLoS One. 7:e43672.
Jones MA, Williams BA, McNicol JW, Simpson CG, Brown JWS, Harmer SL.  2012.  Mutation of Arabidopsis spliceosomal timekeeper locus 1 causes circadian clock defects. The Plant Cell. 24:4066-4082.
Comadran J, Kilian B, Russell JR, Ramsay L, Stein N, Ganal M, Shaw P, Bayer M, Thomas WTB, Marshall DF et al..  2012.  Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley. Nature Genetics. 44:1388-1392.
Tavares LR, Figueira I, Macedo D, McDougall GJ, Leitao MC, Vieira HLA, Stewart D, Alves PM, Ferreira RB, Santos CN.  2012.  Neuroprotective effect of blackberry (Rubus sp.) polyphenols is potentiated after simulated gastronintestinal digestion. Food Chemistry. 131:1443-1452.
Tavares LR, McDougall GJ, Fortalezas S, Stewart D, Ferreira RB, Santos CN.  2012.  The neuroprotective potential of phenolic-enriched fractions from four juniperus species found in Portugal. Food Chemistry. 135:562-570.
Birkel C, Paroli R, Spezia L, Dunn SM, Tetzlaff D, Soulsby C.  2012.  A new approach to simulating stream isotope dynamics using Markov switching autoregressive models. Advances in Water Resources. 46:20-30.
Ampomah OY, James EK, Iannetta PPM, Kenicer G, Sprent JI, Huss-Danell K.  2012.  Nodulation and ecological significance of indigenous legumes in Scotland and Sweden. Symbiosis. 57:133-48.
Fonseca MB, Peix A, de Faria SM, Mateos PF, Rivera LP, Simoes-Araujo JL, Franca MGC, dos Santos Isias RM, Cruz C, Velazquez E et al..  2012.  Nodulation in Dimorphandra wilsonii Rizz. (Caesalpinioideae), a threatened species native to the Brazilian Cerrado. PLoS ONE. 7:e49520.
Gehlot HS, Panwar D, Tak N, Shekhawat NS, Kumar M, Tiwari R, Ardley J, James EK, Sprent JI.  2012.  Nodulation of legumes from the Thar desert of India and molecular characterization of their rhizobia. Plant and Soil. 357:227-243.
Swanson MM, Reavy B, Makarova KS, Cock PJ, Hopkins DW, Torrance L, Koonin EV, Taliansky M.  2012.  Novel bacteriophages containing a genome of another bacteriophage within their genomes. PLoS ONE. 7:e40683.
Shaw P, Brown JWS.  2012.  Nucleoli: Composition, function and dynamics (Review). Plant Physiology. 158:44-51.
Sutherland LA, Darnhofer I.  2012.  Of organic farmers and "good farmers": changing habitus in rural England. Journal of Rural Studies. 28:232-240.
Lamour KH, Stam R, Jupe J, Huitema E.  2012.  The oomycete broad-host-range pathogen Phytophthora capsici. Molecular Plant Pathology. 13:329-337.
Veneklaas EJ, Lambers H, Bragg J, Finnegan PM, Lovelock CE, Plaxton WC, Price C, Scheible W, Shane MW, White PJ et al..  2012.  Opportunities for improving phosphorus-use efficiency in crop plants. New Phytologist. 195:306-320.
Dobson P, Graham J, Stewart D, Brennan RM, Hackett CA, McDougall GJ.  2012.  Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry. Journal of Agricultural and Food Chemistry. 60:5360-5366.
Brown EM, McDougall GJ, Stewart D, Pereira Caro G, Gonzalez-Barrio R, Allsopp P, Magee P, Crozier A, Rowland I, Gill CIR.  2012.  Persistence of anticancer activity in berry extracts after simulated gastrointestinal digestion and colonic fermentation. PLoS ONE. 7:e49740.
Greer E, Martin AC, Pendle A, Colas I, Jones AME, Moore G, Shaw P.  2012.  The Ph1 locus suppresses Cdk2-type activity during premeiosis and meiosis in wheat. The Plant Cell. 24:152-162.
Roberts WM, Stutter MI, Haygarth PM.  2012.  Phosphorus retention and remobilization in vegetated buffer strips: a review. Journal of Environmental Quality. 41:389-399.
McIntosh FM, Maison N, Holtrop G, Young P, Stevens VJ, Ince J, Johnstone AM, Lobley GE, Flint HJ, Louis P.  2012.  Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ et al..  2012.  A physical, genetic and functional sequence assembly of the barley genome. Nature. 491:711-716.
Cowan GH, Roberts AG, Chapman SN, Ziegler A, Savenkov EI, Torrance L.  2012.  The potato mop-top virus TGB2 protein and viral RNA associate with chloroplasts and viral infection induces inclusions in the plastids. Frontiers in Plant Science. 3
Hartley IP, Garnett MH, Sommerkorn M, Hopkins DW, Fletcher BJ, Sloan VL, Phoenix GK, Wookey PA.  2012.  A potential loss of carbon associated with greater plant growth in the European Arctic. Nature Climate Change. 2:875-879.
Merz U, Lees AK, Sullivan L, Schwarzel R, Hebeisen T, Kirk HG, Bouchek-Mechiche K, Hofferbert HR.  2012.  Powdery scab resistance in Solanum tuberosum: an assessment of cultivar x environment effect. Plant Pathology. 61:29-36.
Urquhart J, Courtney P, Slee W.  2012.  Private woodland owners' perspectives on multifunctionality in English woodlands. Journal of Rural Studies. 28:95-106.
Wheelhouse NM, Sait M, Aitchison K, Livingstone M, Wright F, McLean K, Inglis NF, Smith DGE, Longbottom D.  2012.  Processing of chlamydia abortus polymorphic membrane protein 18D during the chlamydial developmental cycle. PLoS ONE. 7:e49190.
Hughes V, Garcia-Sanchez A, Smith S, McLean K, Lainson A, Nath M, Stevenson K.  2012.  Proteome-determined type-specific proteins of Mycobacterium avium subspecies paratuberculosis. Veterinary Microbiology. 158:153-162.
Denwood MJ, Love S, Innocent GT, Matthews L, McKendrick IJ, Hillary N, Smith A, Reid SWJ.  2012.  Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method. Veterinary Parasitology. 188:120-126.
Foito A, Hackett CA, Byrne SL, Stewart D, Barth S.  2012.  Quantitative trait loci analysis to study the genetic regulation of non-polar metabolites in perennial ryegrass. Metabolomics. 11:412-424.
Ponce-Molina LJ, Casas AM, Gracia MP, Silvar C, Mansour E, Thomas WTB, Schweizer G, Herz M, Igartua E.  2012.  Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross. Crop Science. 52:2469-2480.
McMenemy LS, Hartley SE, MacFarlane SA, Karley AJ, Shepherd T, Johnson SN.  2012.  Raspberry viruses manipulate the behaviour of their insect vectors. Entomologia Experimentalis et Applicata. 144:56-68.
Stopher KV, Nussey DH, Clutton-Brock TH, Guinness F, Morris A, Pemberton JM.  2012.  Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer. Journal of Evolutionary Biology. 25:2457-2469.
Stutter MI, Shand CA, George TS, Blackwell MSA, Bol R, Mackay RL, Richardson AE, Condron LM, Turner BL, Haygrath PM.  2012.  Recovering phosphorus from soil - A root solution? Environmental Science and Technology. 46:1977-1978.
Sutherland LA.  2012.  Return of the gentleman farmer?: conceptualising gentrification in UK agriculture Journal of Rural Studies. 28:568-576.
Schulte RPO, Fealy R, Creamer RE, Towers W, Harty T, Jones RJA.  2012.  A review of the role of excess soil moisture conditions in constraining farm practices under Atlantic conditions. Soil Use and Management. 28:580-589.
Dahlin AS, Edwards AC, Lindstrom BEM, Ramezanian A, Shand CA, Walker RL, Watson CA, Oborn I.  2012.  Revisiting herbage sample collection and preparation procedures to minimise risks of trace element contamination. European Journal of Agronomy. 43:33-39.
Tan HW, Weir BS, Carter N, Heenan PB, Ridgway HJ, James EK, Sprent JI, Young JPW, Andrews M.  2012.  Rhizobia with 16S rRNA and nifH similar to Mesorhizobium huakuii but Novel recA, glnII, nodA and nodC genes are symbionts of New Zealand Carmichaelinae. PLoS ONE, e47677. 7
Stutter MI, Chardon WJ, Kronvang B.  2012.  Riparian buffer strips as a multifunctional management tool in agricultural landscapes: introduction. Journal of Environmental Quality. 41:297-303.
Bradford RA, O'Sullivan JJ, van der Craats IM, Krywkow J, Rotko P, Bonaiuto M, Waylen K, Schelfaut K.  2012.  Risk perception - Issues for flood management in Europe. Natural Hazards and Earth System Sciences. 12:2299-2309.
Gonzalez I, Rakitina DV, Semashko MA, Taliansky ME, Praveen S, Palukaitis P, Carr JP, Kalinina N, Canto T.  2012.  RNA binding is more critical to the suppression of silencing function of Cucumber mosaic virus 2b protein than nuclear localization. RNA. 18:771-782.
Seresinhe T, Madushika SAC, Seresinhe Y, Lal PK, Orskov ER.  2012.  The role of free radicals in brassica-induced anaemia of sheep: an ESR spin trapping study. Asian-Australiasian Journal of Animal Sciences. 25:1404-1410.
Matthies E, Selge S, Klockner CA.  2012.  The role of parental behaviour for the development of behaviour specific environmental norms - the example of recycling and re-use behaviour. Journal of Environmental Psychology. 32:277-284.
Charkowski A, Blanco C, Condemine G, Expert D, Franza T, Hayes C, Hugouvieux-Cotte-Pattat N, Lopez Solanilla E, Low D, Moleleki L et al..  2012.  The role of secretion systems and small molecules in soft-rot enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50:425-449.
Littlewood NA, Stewart AJA, Woodcock BA.  2012.  Science into practice - how can fundamental science contribute to better management of grasslands for invertebrates? Insect Conservation and Diversity. 5:1-8.
Slee B, Feliciano D, Nijnik M, Pajot G.  2012.  The scope of the land-based sector to mitigate climate change in North-east Scotland: opportunities and challenges with particular reference to the role of forests. International Journal of Environment and Sustainable Development.. 11:274-292.
Street LE, Stoy PC, Sommerkorn M, Fletcher BJ, Sloan VL, Hill TC, Williams M.  2012.  Seasonal bryophyte productivity in the sub-Arctic: a comparison with vascular plants. Functional Ecology. 26:365-378.
Shand CA, Eriksson J, Dahlin S, Lumsdon DG.  2012.  Selenium concentrations in national inventory soils from Scotland and Sweden and their relationships with geochemical factors. Journal of Geochemical Exploration. 121:4-14.
Wilson K, Sammin D, Harmeyer S, Nath M, Livingstone M, Longbottom D.  2012.  Seroprevalence of chlamydial infection in cattle in Ireland. Veterinary Journal. 193:583-585.
Bouma J, Broll G, Crane TA, Dewitte O, Gardi C, Schulte R, Towers W.  2012.  Soil information in support of policy making and awareness raising. Current Opinion in Environmental Sustainability. 4:1-7.
Valentine TA, Hallett PD, Binnie K, Young MW, Squire GR, Hawes C, Bengough AG.  2012.  Soil strength and macropore volume limit root elongation rates in many UK agricultural soils. Annals of Botany. 110:259-270.
Newton AC, Guy DC, Bengough AG, Gordon DC, McKenzie BM, Sun B, Valentine TA, Hallett PD.  2012.  Soil tillage effects on the efficacy of cultivars and their mixtures in winter barley. Field Crops Research. 128:91-100.
van der Heijden G, Song Y, Horgan G, Polder G, Dieleman A, Bink M, Palloix A, van Eeuwijk F, Glasbey C.  2012.  SPICY: towards automated phenotyping of large pepper plants in the greenhouse. Functional Plant Biology. 39:870-877.
Nelson SE, Tisdall JM, Wilkinson K, Smith SE, McKenzie BM.  2012.  Stabilisation of soil against wind erosion by six saprotrophic fungi. Soil Biology and Biochemistry. 50:134-141.
Deeks MJ, Calcutt JR, Ingle EKS, Hawkins TJ, Chapman SN, Richardson AC, Mentlak DA, Dixon MR, Cartwright F, Smertenko AP et al..  2012.  A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Current Biology. 22:1595-1600.
Burgess CGS, Bartley Y, Redman E, Skuce PJ, Nath M, Whitelaw F, Tait A, Gilleard JS, Jackson F.  2012.  A survey of the trichostrongylid nematode species present on UK sheep farms and associated anthelmintic control practices. Veterinary Parasitology. 189:299-307.
Smith P, Albanito F, Bell M, Bellarby J, Blagodatskiy S, Datta A, Dondini M, Fitton N, Flynn H, Hastings A et al..  2012.  Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W.  2012.  A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis. The Plant Cell. 24:3506-3529.
Bergfur J, Demars BOL, Stutter MI, Langan SJ, Friberg N.  2012.  The Tarland Catchment Initiative and its effect on stream water quality and macroinvertebrate indices. Journal of Environmental Quality. 41:314-321.
Tilsner J, Linnik O, Wright KM, Bell K, Roberts AG, Lacomme C, Santa Cruz S, Oparka KJ.  2012.  The TGB1 movement protein of potato virus X reorganises actin and endomembranes into the X--body, a viral replication factory. Plant Physiology. 158:1359-1370.
Sato S, Tabata S, Hirakawa H, Asamizu E, Shirasawa K, Isobe S, Bryan G, et al..  2012.  The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485:635-641.
Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow M, Verdier V, Beer SV, Machado MA et al..  2012.  Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology. 13:614-629.
Zysko A, Sanguin H, Hayes A, Wardleworth L, Zeef L, Sim A, Paterson E, Singh BK, Kertesz MA.  2012.  Transcriptional response of Pseudomonas aeruginosa to a phosphate-deficient Lolium perenne rhizosphere. Plant and Soil. 359:25-44.
Marquez Y, Brown JWS, Simpson CG, Barta A, Kalyna M.  2012.  Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Research. 22:1184-1195.
Downie H, Holden N, Otten W, Spiers AJ, Valentine TA, Dupuy LX.  2012.  Transparent soil for imaging the rhizosphere. PLoS ONE. 7:e44276.
Sutherland LA, Burton RJF, Ingram J, Blackstock KL, Slee B, Gotts N.  2012.  Triggering change: towards a conceptualisation of major change processes in farm decision-making. Journal of Environmental Management. 104:142-151.
Buijs A, Hovardas T, Castro P, Devine-Wright P, Figari H, Fischer A, Mouro C, Selge S.  2012.  Understanding people's ideas on natural resource management: research on social representations of nature. Society and Natural Resources.. 25:1167-1181.
van de Weerd HA, Seaman S, Wheeler K, Goddard PJ, McLean B.  2012.  Use of artificial drinkers by unhandled semi-feral ponies. Applied Animal Behaviour Science. 139:86-95.
NicDaéid NN, Meier-Augenstein W, Kemp HF, Sutcliffe OB.  2012.  Using isotopic fractionation to link precursor to product in the synthesis of (±)-mephedrone. A new tool for combating 'legal high' drugs. Analytical Chemistry. 84:8691-8696.
Swanston JS, Smith PL, Agu RC, Brosnan JM, Bringhurst TA, Jack FR.  2012.  Variation, across environments within the UK, in grain protein and grain hardness, in wheat varieties of differing distilling quality. Field Crops Research. 127:146-152.
2011
Sun XL, Gilroy EM, Chini A, Nurmberg PL, Hein I, Lacomme C, Birch PRJ, Hussain A, Yun BW, Loake GJ.  2011.  ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
Spies A, Korzun V, Bayles R, Rajaraman J, Hedley PE, Schweizer P.  2011.  Allele mining in barley genetic resources reveals genes of race-nonspecific powdery mildew resistance. Frontiers in Plant Science: Plant Nutrition. 2:e113.
Paterson E, Neilson R, Midwood AJ, Osborne SM, Sim A, Thornton B, Millard P.  2011.  Altered food web structure and C-flux pathways associated with mineralisation of organic amendments to agricultural soil. Applied Soil Ecology. 48:107-116.
Russell JR, Dawson IK, Flavell AJ, Steffenson B, Weltzien E, Booth A, Ceccarelli S, Grando S, Waugh R.  2011.  Analysis of >1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes. New Phytologist. 191:564-578.
Kalendar R, Flavell AJ, Ellis THN, Sjakste T, Moisy C, Schulman AH.  2011.  Analysis of plant diversity with retrotransposon-based molecular markers. Heredity. 106:520-530.
Debeljak M, Squire GR, Kocev D, Hawes C, Young MW, Dzeroski S.  2011.  Analysis of time series data on agroecosystem vegetation using predictive clustering trees. Ecological Modelling. 222:2524-2529.
Nwosu F, Morris J, Lund VA, Stewart D, Ross HA, McDougall GJ.  2011.  Anti-proliferative and potential anti-diabetic effects of phenolic-rich extracts from edible marine algae. Food Chemistry. 126:1006-1012.
Knapp CW, McCluskey SM, Singh BK, Campbell CD, Hudson G, Graham DW.  2011.  Antibiotic resistance gene abundances correlate with metal and geochemical conditions in archived Scottish soils. PLoS ONE. 6:e27300.
Farmer J, Matthews R, Smith JU, Smith P, Singh BK.  2011.  Assessing existing peatland models for their applicability for modelling greenhouse gas emissions from tropical peat soils. Current Opinion in Environmental Sustainability. 3:339-349.
McDougall GJ, Martinussen I, Junttila O, Verrall SR, Stewart D.  2011.  Assessing the influence of genotype and temperature on polyphenol composition in cloudberry (Rubus chamaemorus L) using a novel mass spectrometric method. Journal of Agricultural and Food Chemistry. 59:10860-10868.
Buttoud G, Kouplevatskaya-Buttoud I, Slee B, Weiss G.  2011.  Barriers to institutional learning and innovations in the forest sector in Europe: Markets, policies and stakeholders. Forest Policy and Economics. 13:124-131.
Cornulier T, Robinson RA, Elston DA, Lambin X, Sutherland WJ, Benton T.  2011.  Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution. 2:86-94.
Grussu D, Stewart D, McDougall GJ.  2011.  Berry polyphenols inhibit a-amylase in vitro: Identifying active components in rowanberry and raspberry. Journal of Agricultural and Food Chemistry. 59:2324-2331.
Xin GS, Long RJ, Guo XS, Irvine RJ, Ding LM, Ding LL, Shang ZH.  2011.  Blood mineral status of grazing Tibetan sheep in the Northeast of the Qinghai-Tibetan Plateau. Livestock Science. 136:102-107.
Palacio S, Paterson E, Sim A, Hester AJ, Millard P.  2011.  Browsing affects intra-ring carbon allocation in species with contrasting wood anatomy. Tree Physiology. 31:150-159.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2011.  Browsing interacts with climate to determine tree-ring increment. Functional Ecology. 25:1018-1023.
Irbe I, Andersone I, Andersons B, Noldt G, Dizhbite T, Kurnosova N, Nuopponen M, Stewart D.  2011.  Characterisation of the initial degradation stage of Scots pine (Pinus sylvestris L.) sapwood after attack by brown-rot fungus Coniophora puteana. Biodegradation. 22:719-728.
Fisher M, Downie H, Welten MCM, Delgado I, Bain AA, Planzer T, Sherman A, Sang H, Tickle C.  2011.  Comparative analysis of 3D expression patterns of transcription factor genes and digit fate maps in the developing chick wing. PLoS ONE. 6:e18661.
Bayer MM, Milne I, Stephen G, Shaw P, Cardle L, Wright F, Marshall DF.  2011.  Comparative visualization of genetic and physical maps with Strudel. Bioinformatics. 27:1307-1308.
Cullen DW, Harwood WA, Smedley M, Davies HV, Taylor MA.  2011.  Comparison of DNA walking methods for isolation of transgene flanking regions in GM potato. Molecular Biotechnology. 49:19-31.
Dick J, Andrews C, Beaumont DA, Benham S, Brooks DR, Corbett S, Lloyd D, McMillan S, Monteith DT, Pilgrim ES et al..  2011.  A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
Vinten AJA, Artz RRE, Thomas N, Potts JM, Avery LM, Langan SJ, Watson H, Cook Y, Taylor C, Abel C et al..  2011.  Comparison of microbial community assays for the assessment of stream biofilm ecology. Journal of Microbiological Methods. 85:190-198.
Kikvidze Z, Suzuki M, Brooker R.  2011.  Conceptualising importance - response to Freckleton and Rees. Trends in Ecology and Evolution. 26:499-500.
Newton AC, Flavell AJ, George TS, Leat P, Mullholland BJ, Ramsay L, Revoredo-Giha C, Russell JR, Steffenson BJ, Swanston JS et al..  2011.  Crops that feed the world 4. Barley: a resilient crop? Strengths and weaknesses in the context of food security Food Security. 3:141-178.
Burthe S, Butler A, Searle KR, Hall S, Thackeray SJ, Wanless S.  2011.  Demographic consequences of increased winter births in a large aseasonally breeding mammal (Bos taurus) in response to climate change. Journal of Animal Ecology. 80:1134-1144.
Francia E, Tondelli A, Rizza F, Badeck FW, Nicosia OLD, Akar T, Grando S, Al-Yassin A, Bendelkacem A, Thomas WTB et al..  2011.  Determinants of barley grain yield in a wide range of Mediterranean environments. Field Crops Research. 120:169-178.
Forbes AB, Ramage C, Sales J, Baggott D, Donachie W.  2011.  Determination of the duration of antibacterial efficacy following administration of gamithromycin using a bovine Mannheimia haemolytica challenge model. Antimicrobial Agents and Chemotherapy. 55:831-835.
Moran D, MacLeod M, Wall V, Eory V, McVittie A, Barnes A, Rees R, Pajot G, Matthews R, Smith P et al..  2011.  Developing carbon budgets for UK agriculture, land-use, land-use change and forestry out to 2022. Climatic Change. 105:529-553.
Spencer K, Suzuki K, Hillier S.  2011.  The development of rare earth element-labelled potassium depleted clays for use as cohesive sediment tracers in aquatic environments. Journal of Soils and Sediments. 11:1052-1061.
Toth IK, van der Wolf JM, Saddler G, Lojkowska E, Helias V, Pirhonen M, Tsror L, Elphinstone JG.  2011.  Dickeya species: an emerging problem for potato production in Europe. Plant Pathology. 60:385-399.
Singh BK, Tate K, Thomas N, Ross D, Singh J.  2011.  Differential effect of afforestation on nitrogen-fixing and denitrifiying communities and potential implications for nitrogen cycling. Soil Biology and Biochemistry. 43:1426-1433.
Anthony JP, Fyfe L, Stewart D, McDougall GJ.  2011.  Differential effectiveness of berry polyphenols as anti-giardial agents. Parasitology. 138:1110-1116.
Zebarth BJ, Tai H, Sainan L, Millard P, De Koyer D, Li XQ, Xiong X.  2011.  Differential gene expression as an indicator of nitrogen sufficiency in field grown potato plants. Plant and Soil. 345:387-400.
Slee B, Whitfield R, Whitfield S.  2011.  Discourses of power: the development of small-scale hydropower in North-East Scotland. Rural Society. 21:54-64.
Day-Stirrat RJ, Milliken KL, Dutton SP, Loucks RG, Hillier S, Aplin AC, Schleicher AM.  2011.  Discussion in response to Knut Bjorlykke regarding JMPG_1376 "Open-System Chemical Behavior In Deep Wilcox Group Mudstones, Texas Gulf Coast, USA". Marine and Petroleum Geology. 28:1383-1384.
Sun B, Hallett PD, Caul S, Daniell TJ, Hopkins DW.  2011.  Distribution of soil carbon and microbial biomass in arable soils under different tillage regimes. Plant and Soil. 338:17-25.
Iason GR, O'Reilly-Wapstra J, Brewer MJ, Summers RW, Moore BD.  2011.  Do multiple herbivores maintain chemical diversity of Scots pine monoterpenes? Philosophical Transactions of the Royal Society, Series B. 366:1337-1345.
Walker AW, Ince J, Duncan SH, Webster L, Holtrop G, Ze X, Brown DS, Stares MD, Scott P, Bergerat A et al..  2011.  Dominant and diet-responsive groups of bacteria within the human colonic microbiota. International Society for Microbial Ecology (ISME) Journal. 5:220-230.
Karley AJ, Valentine TA, Squire GR.  2011.  Dwarf alleles differentially affect barley root traits influencing nitrogen acquisition under low nutrient supply. Journal of Experimental Botany. 62:3917-3927.
Byrne SL, Foito A, Hedley PE, Morris J, Stewart D, Barth S.  2011.  Early response mechanisms of perennial ryegrass (Lolium perenne) to phosphorous deficiency. Annals of Botany. 107:243-254.
Garcia-Palacios P, Bowker MA, Chapman SJ, Maestre FT, Soliveres S, Gallardo A, Valladares F, Guerrero C, Castillo-Monroy AP, Escudero A.  2011.  Early-successional vegetation changes after roadside prairie restoration modify soil functioning by changing microbial functional diversity. Soil Biology and Biochemistry. 43:1245-1253.
Koikkalainen RK, l Dawson A, Mayes RW, Smith JU.  2011.  Effect of plant species, nitrogen fertilizer and grass age on the dynamics of intra-aggregate SOM. Soil Biology and Biochemistry. 43:1104-1107.
Sutherland LA.  2011.  Effectively organic: Environmental gains on conventional farms through the market? Land Use Policy. 28:815-824.
Swanston JS, Middlefell-Williams J, Forster BP, Thomas WTB.  2011.  Effects of grain and malt beta-glucan on distilling quality in a population of hull-less barley. Journal of the Institute of Brewing. 117:389-393.
Jayakody S, Sibbald AM, Mayes RW, Hooper RJ, Gordon IJ, Lambin X.  2011.  Effects of human disturbance on the diet composition of wild red deer Cervus elaphus. European Journal of Wildlife Research. 57:939-948.
Gutleb AC, Lilienthal H, Erhard HW, Zimmer KE, Skaare JU, Ropstad E.  2011.  Effects of pre- and postnatal polychlorinatedbiphenylexposure on emotional reactivity observed in lambs before weaning. Ecotoxicology and Environmental Safety. 74:1396-1401.
Psaltopoulos D, Skuras D, Thomson KJ.  2011.  Employment effects of private investment initiatives in rural areas of southern Europe: a regional SAM approach. Agricultural Economics Review (Greek Association of Agricultural Economists). 12:50-61.
McIntosh BS, Ascough, J. C. II, Twery M, Chew J, Elmahdi A, Haase D, Harou JJ, Hepting D, Cuddy S, Jakeman AJ et al..  2011.  Environmental decision support systems (EDSS) development - challenges and best practices. Environmental Modelling and Software. 26:1389-1402.
Flower K, Thomas D, Heather J, Ramasubramanyan S, Jones S, Sinclair AJ.  2011.  Epigenetic control of viral life-cycle by a DNA-methylation dependent transcription factor. PLoS ONE. 6:e29522.
Marcon M, Mariano K, Braga RA, Paglis CM, Scalco MS, Horgan GW.  2011.  Estimation of total leaf area in perennial plants using image analysis. Revista Brasileira de Engenharia Agricola e Ambiental. 15:96-101.
Vetukuri RR, Avrova AO, Grenville-Briggs LJ, van West P, Soderbom F, Savenkov EI, Whisson SC, Dixelius C.  2011.  Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans. Molecular Plant Pathology. 12:772-785.
Squires J, Gillespie T, Schoelz JE, Palukaitis P.  2011.  Excision and episomal replication of Cauliflower mosaic virus integrated into a plant genome. Plant Physiology. 155:1908-1919.
Whisson SC, Avrova AO, Boevink PC, Armstrong MR, Seman ZA, Hein I, Birch PRJ.  2011.  Exploiting knowledge of pathogen effectors to enhance late blight resistance in potato. Potato Research. 54:325-340.
Subedi M, Hocking TJ, Fullen MA, McCrea AR, Milne E.  2011.  Factors influencing the effectiveness of an agro-environmental project in China. Outlook on Agriculture. 40:157-163.
Currey PA, Johnson D, Dawson LA, van der Wal R, Thornton B, Sheppard LJ, Leith ID, Artz RRE.  2011.  Five years of simulated atmospheric nitrogen deposition have only subtle effects on the fate of newly synthesized carbon in Calluna vulgaris and Eriophorum vaginatum. Soil Biology and Biochemistry. 43:495-502.
Hammond JP, Broadley MR, Bowen HC, Spracklen WP, Hayden R, White PJ.  2011.  Gene expression changes in phosphorus deficient potato (Solanum tuberosum L.) leaves and the potential for diagnostic gene expression markers. PLoS ONE. 6:e24606.
Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M et al..  2011.  Genetic dissection of barley morphology and development. Plant Physiology. 155:617-627.
Sait M, Clark EM, Wheelhouse N, Spalding L, Livingstone M, Sachse K, Markey BK, Magnino S, Siarkou VI, Vretou E et al..  2011.  Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. Veterinary Microbiology. 151:284-290.
Xu X, Pan SK, Cheng SF, Zhang B, Mu DS, Ni PX, Zhang GY, Yang S, Li RQ, Wang J et al..  2011.  Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJA et al..  2011.  Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathogens. 7:e1002219.
Slee B.  2011.  Governance, multifunctional forestry and economic literacy. Scottish Forestry. 65:18-23.
Fitton N, Ejerenwa C, Bhogal A, Edgington P, Black HIJ, Lilly A, Barraclough D, Worral F, Hillier J, Smith P.  2011.  Greenhouse gas mitigation potential of agricultural land in Great Britain. Soil Use and Management.. 27:491-501.
Speed J, Austrheim G, Hester AJ, Mysterud A.  2011.  Growth limitation of mountain birch caused by sheep browsing at the altitudinal treeline. Forest Ecology and Management. 261:1344-1352.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.