Publications list
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The Phytophthora infestans haustorium is a site for secretion of diverse classes of infection-associated proteins. MBIO. 9:ArticleNo.e01216-18.
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2018.
Phytophthora infestans effector SFI3 targets potato UKB to suppress early immune transcriptional response. New Phytologist. 222:438-454.
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2019.
Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.
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2010.
Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycological Research. 110:1309-1322. Abstract
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2006.
Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia. Persoonia - Molecular Phylogeny and Evolution of Fungi. 41:39-55.
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2018.
Phytaspase-mediated precursor processing and maturation of the wound hormone systemin. New Phytologist. 218:1167-1178.
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2018.
Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity. EMBO Journal. 29:1149-1161.
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2010.
Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature. Plant Cell and Environment. 37:439-450.
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2014.
Physiological, biochemical and molecular responses of soil microbial community after afforestation of pastures with Pinus radiata. Soil Biology and Biochemistry. 41(8):1642-1651.
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2009.
Physico-chemical and biological controls on dissolved organic matter in peat aggregate soil columns. European Journal of Soil Science. 58:646-657.
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2007.
Phylogenetic overview of the Boletineae. Fungal Biology. 117:479-511.
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2013.
Phylogenetic effects on shoot magnesium concentration. Crop and Pasture Science. 66:1241-1248.
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2015.
Phosphorus in soils and plants - facing phosphorus scarcity. Plant and Soil. 401:1-6.
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2016.
Phenotypical and molecular characterization of Tomato mottle Taino virus - Nicotiana megalosiphon interaction. Physiological and Molecular Plant Pathology. 67:231-236. Abstract
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2006.
Phenological trends and trophic mismatch across multiple levels of a North Sea pelagic food web. International Journal of Plant Genomics. 454:119-133.
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2012.
Pesticides "security" threat. Chemistry and Industry. 78:28.
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2014.
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2020.
A perspective on crn proteins in the genomics age: evolution, classification, delivery and function revisited. Frontiers in Plant Science. 8
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2017.
Permeable reactive interceptors - blocking diffuse nutrient and greenhouse gases losses in key areas of the farming landscape. Journal of Agricultural Science. 152:S71-S81.
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2014.
Pectobacterium atrosepticum KDPG aldolase, Eda, participates in the Entner-Doudoroff pathway and independently inhibits expression of virulence determinants. Molecular Plant Pathology. 22:271-283.
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2021.
Pectin engineering to modify product quality in potato. Plant Biotechnology Journal. 9:848-856.
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2011.
Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
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2009.
Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Molecular Biology and Evolution. 22:659-672. Abstract
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2005.
Pathways linking biodiversity to human health: A conceptual framework. Environment International. 150:ArticleNo.106420.
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2021.
Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist. Published online..
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In Press.
Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist. 221:1634-1648.
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2019.
Partitioning of soil phosphorus among arbuscular and ectomycorrhizal trees in tropical and subtropical forests. Ecology Letters. 21:713-723.
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2018.
Participatory wildlife surveys in communal lands: a case study from Simanjiro, Tanzania. African Journal of Ecology. 8(3):727-735.
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2010.
Participatory scenario-planning in place-based social-ecological research: insights and experiences from 23 case studies. Ecology and Society. 20:ArticleNo.34.
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2015.
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2015.
Parental differences in brood provisioning by Hen Harriers Circus cyaneus. Bird Study. 55(2):209-215.
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2008.
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2008.
Pantoea ananatis utilizes a type VI secretion system for pathogenesis and bacterial competition. Molecular Plant-Microbe Interactions. 28:420-431.
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2015.
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2006.
Osmotic stress tolerance of Capsella bursa-pastoris seeds contributes to bet-hedging in arable fields. Association of Applied Biologists - Agricultural Ecology Research: It's Role in Delivering Sustainable Farm Systems, Dundee, 15-16 June 2011. Aspects of Applied Biology. 109:39-40.
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2011.
Oriented immobilisation of engineered single-chain antibodies to develop biosensors for virus detection. Journal of Virological Methods. 134:164-170. Abstract
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2006.
Organization and evolution of subtelomeric satellite repeats in the potato genome. Genes Genomes Genetics. 1:85-92.
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2011.
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2016.
Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities. Plant and Soil. 427:191-208.
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2018.
Organic matter chemistry controls greenhouse gas emissions from permafrost peatlands. Soil Biology and Biochemistry. 98:42-53.
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2016.
Optimization of in vitro inhibition of HT-29 colon cancer cell cultures by Solanum tuberosum L. extracts. Food and Function. 6:72-83.
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2015.
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2015.
Optimised processing of faba bean (Vicia faba L.) kernels as a brewing adjunct. Journal of the Institute of Brewing. 127:13-20.
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2021.
Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
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2017.
Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
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2018.
Oomycetes seek help from the plant: Phytophthora infestans effectors target host susceptibility factors. Molecular Plant. 9:636-638.
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2016.
The oomycete microbe-associated molecular pattern Pep-13 triggers SERK3/BAK1-independent plant community. Plant Cell Reports. 38:173-182.
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2019.
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2015.
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2012.
One century of Nordic barley breeding: nitrogen use efficiency, agronomic traits and genetic diversity. Journal of Agricultural Science. 155:582-598.
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2017.
On the use of unmanned aerial systems for environmental monitoring. Remote Sensing. 10:ArticleNo.641.
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2018.
On the use of unmanned aerial systems for environmental monitoring. Remote Sensing. 10:ArticleNo.641.
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2018.
On the role of women in bushmeat hunting - insights from Tanzania and Ethiopia. Journal of Rural Studies. 28:622-630.
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2012.
On the multifunctionality of hunting - an institutional analysis of eight cases from Europe and Africa. Journal of Environmental Planning and Management. 56:531-552.
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2013.
Old and new faces of the nucleolus. Workshop on the nucleolus and disease. EMBO Reports. 10:35-40. Abstract
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2008.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
The ODD protocol for describing agent-based and other simulation models: a second update to improve clarity, replication, and structural realism. Journal of Artificial Societies and Social Simulation. 23:ArticleNo.7.
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2020.
Occurrence of resistance-breaking populations of root-knot nematodes on tomato in Greece. European Journal of Plant Pathology. 113:101-105. Abstract
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2005.
Occurrence of priming in the degradation of lignocellulose in marine sediments. PLoS ONE. 10:e0143917.
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2015.
Occurrence and distribution of potato pests and diseases in the major potato growing areas in Kenya. Potato Research. 56:325-342.
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2013.
The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
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2008.
Nucleolar localisation of Potato leafroll virus capsid proteins. Journal of General Virology. 86:2891-2896. Abstract
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2005.
A novel, high-welfare methodology for evaluating poultry red mite interventions in vivo. Veterinary Parasitology. 267:42-46.
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2019.
A novel technique for retrospective genetic analysis of the response to vaccination or infection using cell-free DNA from archived sheep serum and plasma. Veterinary Research. 51:ArticleNo.9..
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2020.
Novel quorum sensing-controlled genes in Erwinia carotovora subsp. carotovora: identification of a fungal elicitor homologue in a soft-rotting bacterium. Molecular Plant-Microbe Interactions. 18:343-353. Abstract
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2005.
A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
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2008.
A novel grass hybrid to reduce flood generation in temperate regions. Nature Scientific Reports, 3, Article no.1683..
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2013.
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2012.
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2019.
Nodulation of legumes from the Thar desert of India and molecular characterization of their rhizobia. Plant and Soil. 357:227-243.
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2012.
No evidence requiring change in the risk assessment of Inachis io larvae. Ecological Modelling. 268:103-122.
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2013.
No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini. Proceedings of the National Academy of Sciences of the United States of America. 1135053
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2016.
Nitrous oxide mitigation in UK agriculture. Soil Science and Plant Nutrition.. 59:3-15.
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2013.
Nitrogen deposition enhances moss growth but leads to an overall decline in habitat condition in mountain moss-sedge heath. Global Change Biology. 18:290-300.
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2012.
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2018.
Nitrogen deposition drives loss of moss cover in alpine moss-sedge heath via lowered C: N ratio and accelerated decomposition. New Phytologist.. 218:470-478.
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2018.
Nitrogen and carbon metabolism in plastids: evolution, integration and coordination with reactions in the cytosol.. Advances in Botanical Research. 42:113-165.
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2005.
New perspectives on managing wildlife diseases. Journal of Applied Ecology.. 46(2):454-456.
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2009.
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2012.
A new approach to simulating stream isotope dynamics using Markov switching autoregressive models. Advances in Water Resources. 46:20-30.
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2012.
The neuroprotective potential of phenolic-enriched fractions from four juniperus species found in Portugal. Food Chemistry. 135:562-570.
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2012.
Neuroprotective effects of digested polyphenols from wild blackberry species. European Journal of Nutrition. 52:225-236.
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2013.
Neuroprotective effect of blackberry (Rubus sp.) polyphenols is potentiated after simulated gastronintestinal digestion. Food Chemistry. 131:1443-1452.
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2012.
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2016.
Network analyses reveal novel aspects of ALS pathogenesis. PLoS Genetics. 11:e1005107.
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2015.
Net ecosystem exchange from two formerly afforested peatlands undergoing restoration in the Flow Country of northern Scotland. Mires and Peat. 23:ArticleNumber05.
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2019.
The neglected season: warmer autumns counteract harsher winters and promote growth in Arctic reindeer. Global Change Biology. 27:993-1002.
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2020.
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2013.
Nature-based interventions for improving health and wellbeing: the purpose, the people and the outcomes. Sports. 7:ArticleNo.141.
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2019.
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2012.
Natural resource governance in lower Omo, Ethiopia - negotiation processes instead of property rights and rules? International Journal of the Commons. 11:ArticleNo.716.
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2017.
Natural capital and ecosystem services, developing an appropriate soils framework as a basis for valuation. Soil Biology and Biochemistry. 57:1023-1033.
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2013.
The N-terminal domain of PMTV TGB1 movement protein is required for nucleolar localization, microtubule association and long-distance movement. Molecular Plant-Microbe Interactions. 23:1486-1497.
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2010.
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2017.
Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
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2009.
Multivariate analysis of protein profiles of metal hyperaccumulator Thlaspi caerulescens accessions. Proteomics. 6:3696-3706. Abstract
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2006.
Multiscale socio-ecological networks in the age of information. PLoS ONE. 13:ArticleNo.e02056672.
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2018.
Multiplicative models for combining information from several sensory experiments: A Bayesian analysis. Food Quality and Preference. 19:260-266. Abstract
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2008.
Multiplex-terminal restriction fragment length polymorphism (M-TRFLP). Nature Protocols. 1(5):2428-2433.
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2006.
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2012.
Multiple mechanisms enable invasive species to suppress native species. Amercian Journal of Botany. 98:1086-1094.
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2011.
The multiple functions of the nucleolus in plant development, disease and stress responses. Frontiers in Plant Science. 9:ArticleNo.132..
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2018.
Multiple C2 domains and transmembrane region proteins (MCTPs) tether membranes at plasmodesmata. Embo Reports. 20:ArticleNo.e47182..
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2019.
Multimodel ensembles of wheat growth: many models are better than one. Global Change Biology. 21:911-925.
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2015.
Multimodel ensembles improve predictions of crop-environment-management interactions. Global Change Biology. 24:5072-5083.
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2018.
Multi-wheat-model ensemble responses to interannual climate variability. Environmental Modelling and Software. 81:86-101.
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2016.
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2011.
Multi locus sequence analysis and symbiotic characterization of novel Ensifer strains nodulating Tephrosia spp. In the Indian Thar Desert. Systematic and Applied Microbiology. 39:534-545.
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2016.
Mud, muddle and models in the knowledge value-chain to action on tropical peatland conservation. Mitigation and Adaptation Strategies for Global Change. 19:887-905.
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2014.
Movement protein of hordeivirus interacts in vitro and in vivo with coilin, a major structural protein of Cajal bodies. Doklady Biochemistry and Biophysics. 442:57-60.
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2012.
Morphological clasification of plant cell deaths. Cell Death and Differentiation. 18:1241-1246.
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2011.
The MORPH-R web server and software tool for predicting missing genes in biological pathways. Physiologia Plantarum. 155:12-20.
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2015.
More plant growth but less plant defence? First global gene expression data for plants grown in soil amended with biochar Global Change Biology Bioenergy. Published online.
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2014.
More plant growth but less plant defence? First global gene expression data for plants grown in soil amended with biochar Global Change Biology Bioenergy. 7:658-672.
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2015.
Monoterpene chemodiversity of ponderosa pine in relation to herbivory and bark beetle colonization. Chemoecology. 16:51-58.
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2006.
Molecular techniques and classical taxonomy on plant-parasitic nematodes diagnosis. Annual Review of Plant Pathology. 19:309-336.
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2011.
The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.
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2010.
Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297. Abstract
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2007.
Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.
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2008.
Molecular characterization of novel Bradyrhizobium strains nodulating ErioSema Chinese and Flemingia vestita, important unexplored native legumes of the sub-Himalayan region (Meghalaya) of India. Systematic and Applied Microbiology. 40:334-344.
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2017.
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2017.
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2017.
Molecular barley breeding. Euphytica. 158:295-303. Abstract
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2007.
A molecular approach to explore the extent of the threatened fungus Hypocreopsis rhododendri within wood. Fungal Biology. 116:354-362.
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2012.
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2012.
Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
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2005.
Modelling the hydrological impacts of rural land use change. Hydrology Research. 45:737-754.
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2014.
Modelling species' range shifts in a changing climate: The impacts of biotic interactions, dispersal distance and the rate of climate change. Journal of Theoretical Biology. 245(1):59-65.
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2007.
Modelling species abundance in a river by Negative Binomial hidden Markov models. Computational Statistics and Data Analysis. 71:599-614.
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2014.
Modeling smallholder farmers' preferences for soil management measures : A case study from South Ethiopia. Ecological Economics. 145:410-419.
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2018.
Modeling primary and secondary fractionation effects and atmospheric transport of polychlorinated biphenyls through single-source emissions. Environmental Geochemistry and Health. 41:1939-1951.
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2019.
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2010.
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2015.
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2018.
Mobility and toxicity of heavy metal(loid)s arising from contaminated wood ash application to a pasture grassland soil. Environmental Pollution. 218:419-427.
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2016.
Mixed model association scans of multi-environmental trial data reveal major loci controlling yield and yield related traits in Hordeum vulgare in Mediterranean environments. Theoretical and Applied Genetics. 122:1363-1373.
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2011.
Mitigating stress and supporting health in deprived urban communities: the importance of green space and the social environment. International Journal of Environmental Research and Public Health. 13:ArticleNo.440.
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2016.
Mitigating arable soil compaction: A review and analysis of available cost and benefit data. Soil and Tillage Research. 146:10-25.
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2015.
Missing links? The connection between replication and movement of plant RNA viruses Current Opinion in Virology. 2:705-711.
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2012.
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2020.
Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. Published online..
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2018.
Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. 434:151-165.
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2019.
Microbial response to organic matter enrichment in the oligotrophic Levantine Basin (Eastern Mediterranean). Geomicrobiology Journal. 29:648-655.
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2012.
Microbial DNA profiling by multiplex terminal restriction fragment length polymorphism for forensic examination of soil evidence and the influence of sample condition. Journal Applied Microbiology. 105(3):813-821.
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2008.
Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
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2007.
Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.
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2009.
Methane uptake in soils from Pinus radiata plantations, a reverting shrubland and adjacent pastures: effects of land-use change, and soil texture, water and mineral nitrogen. Soil Biology and Biochemistry. 39(7):1437-1449.
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2007.
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2013.
A metabolic regulator modulates virulence and quorum sensing signal production in Pectobacterium atrosepticum. Molecular Plant Microbe Interactions. 26:356-366.
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2013.
Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein. Journal of Experimental Botany. 56:81-89. Abstract
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2005.
Metabolic engineering of carotenoid biosynthesis in plants. Trends in Biotechnology. 26:139-145. Abstract
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2008.
The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.
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2010.
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2019.
A member of the TERMINAL FLOWER 1/CENTRORADIALIS gene family controls sprout growth in potato tubers. Journal of Experimental Botany. 70:835-843.
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2019.
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2011.
Measuring the 13C content of soil respired CO2 using a novel open chamber system. Rapid Communications in Mass Spectrometry. 22:2073-2081.
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2008.
Measuring chronic social tension in groups of growing pigs using inter-individual distances. Applied Animal Behaviour Science. 146:26-36.
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2013.
Measurement and analysis of household carbon: the case of a UK city. Applied Energy. 164:871-881.
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2016.
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2019.
A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris L. Medic (shepherd's purse). Annals of Botany. 109:419-427.
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2012.
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2017.
Mapping species distributions in one dimension by non homogeneous hidden Markov models: freshwater pearl mussels in the River Dee. Environmental and Ecological Statistics. 21:487-505.
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2014.
Mapping socio-economic performance in rural Scotland. Scottish Geographical Journal. 130:1-21.
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2014.
Mapping gene H controlling cane pubescence in raspberry and its association with resistance to cane botyritis and spur blight, rust and cane spot. Theoretical and Applied Genetics. 112:818-831. Abstract
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2006.
Mapping adaptation of barley to droughted environments. Euphytica. 161:35-45. Abstract
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2008.
Managing small populations in practice: black rhino in the Ngorongoro Crater, Tanzania. Oryx. 40(3):319-323.
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2006.
Managing science-policy interfaces for impact: interactions within the environmental governance meshwork. Environmental Science and Policy. 113:21-30.
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2020.
Managing peatland ecosystem services: current UK policy and future challenges in a changing world. Scottish Geographical Journal. 127:209-230.
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2011.
Management to increase the depth of soft soil improves soil conditions and grapevine performance in an irrigated vineyard. Soil and Tillage Research. 98:68-80. Abstract
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2008.
Management and spatial resolution effects on yield and water balance at regional scale in crop models. Agricultural and Forest Meteorology. 275:184-195.
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2019.
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2012.
Maleimide scavenging enhances determination of protein S-palmitoylation state in acyl-exchange methods. Biotechniques. 62:69-75.
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2017.
Major agricultural changes required to mitigate phosphorus losses under climate change. Nature Communications. 8:ArticleNo,161.
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2017.
Major agricultural changes required to mitigate phosphorus losses under climate change. Nature Communications. 8:ArticleNo,161.
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2017.
Lumbricus terrestris counteract the effects of modified lignin biosynthesis on the decomposition of tobacco plant residues. Soil Biology & Biochemistry. 37:1141-1144. Abstract
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2005.
Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell and Environment. 37:1276-1298.
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2014.
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2014.
Lotus japonicus ARPC1 is required for rhizobial infection. Plant Physiology. 160:917-928.
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2012.
Loss of microbial diversity in soils is coincident with reductions in some specialized functions. Environmental Microbiology. 16:2408-2420.
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2014.
Loss of labile carbon following soil disturbance determinded by measurement of respired d¹³CO. Soil Biology and Biochemistry. 68:125-132.
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2014.
Long-term macronutrient stoichiometry of UK ombrotrophic peatlands. Science of the Total Environment. 572:1561-1572.
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2016.
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2017.
Long-term impacts of nitrogen deposition on coastal plant communities. Environmental Pollution. 221:337-347.
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2016.
Long-term impacts of goat browsing on bush-clump dynamics in a semi-arid subtropical savanna. Plant Ecology. 183(2):277-290.
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2006.
Long-term ecosystem dynamics in the Serengeti: lessons for conservation. Conservation Biology. 21(3):580-590.
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2007.
Long-term drainage for forestry inhibits extracellular phenol oxidase activity in Finnish boreal mire peat. European Journal of Soil Science. 61(6):950-957.
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2010.
Long-chain alcohols did not improve predictions of the composition of tall fescue and red clover mixtures over n-alkanes alone. Grass and Forage Science. 70:499-506.
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2015.
Long term temporal and spatial changes in the distribution of polychlorinated biphenyls and polybrominated diphenyl ethers in Scottish soils. Science of the Total Environment. 468-469:158-164.
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2014.
A locus conferring effective late blight resistance in potato cultivar Sarpo Mira maps to chromosome XI. Theoretical and Applied Genetics. 127:647-657.
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2014.
Livestock predation in the Bale Mountains, Ethiopia. African Journal of Ecology. 48(4):1076-1082.
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2010.
Litter type, but not plant cover, regulates initial litter decomposition and fungal community structure in recolonising cutover peatlands. Soil Biology and Biochemistry. 41(3):651-655.
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2009.
Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
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2009.
Linking biosensor responses to Cd, Cu and Zn partitioning in soils. Environmental Pollution. 142(3):493-500.
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2006.
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2009.
Limited nutritional benefit to the seagrass Halophila ovalis, in culture, following sediment organic matter enrichment. Estuarine Coastal and Shelf Science. 68:675-685. Abstract
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2006.
Limited evolutionary rescue of locally adapted populations facing climate change. Philosophical Transactions of the Royal Society B. 368:e20120083.
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2013.
Liming impacts barley yield over a wide concentration range of soil exchangeable cations. Nutrient Cycling in Agroecosystems. Published online..
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2021.
Light regulation of chlorophyll and glycoalkaloid biosynthesis during tuber greening of potato S. tuberosum. Frontiers in Plant Science. 11:ArticleNo.753.
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2020.
Lichen response to ammonia deposition defines the footprint of a penguin rookery. Biogeochemistry. 122:295-311.
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1992.