Publications list

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2016

Hamel S, Gaillard JM, Yoccoz NG, Albon S, Cote SD, Craine JM, Festa-Bianchet M, Garel M, Lee P, Moss C et al.. 2016. Cohort variation in individual body mass dissipates with age in large herbivores. Ecological Monographs. 86:517-543.

Hamel S, Gillard JM, Yoccoz N, Albon SD, Cote SD, Craine JM, Festa-Blanchet M, Garel M, Lee P, Moss C et al.. 2016. Cohort variation in individual body mass dissipates with age in large herbivores. Ecological Monographs. 86:517-543.

Iannetta PPM, Young M, Bachinger J, Bergkvist G, Lopez-Bellido RJ, Monti M, Pappa VA, Reckling M, Topp CFE, Walker RL et al.. 2016. A comparative nitrogen balance and productivity analysis of legume and non-legume supported cropping systems: the potential role of biological nitrogen fixation. Frontiers in Plant Science. 7:ArticleNo.1700..

Thorpe P, Cock PJA, Bos J. 2016. Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets. BMC Genomics. 17

Albon SD, Irvine RJ, Halvorsen O, Langvatn R, Loe LE, Ropstad E, Veiberg V, van der Wal R, Bjorkvoll EM, Duff EI et al.. 2016. Contrasting effects of summer and winter warming on body mass explain population dynamics in a food-limited Arctic herbivore. Global Change Biology. Published online..

Crozier L, Hedley PE, Morris J, Wagstaff C, Andrews SC, Toth I, Jackson RW, Holden N. 2016. Corrigendum: whole-transcriptome analysis of verocytotoxigenic Escherichia coli O157:H7 (Sakai) suggests plant-species-specific metabolic responses on exposure to spinach and lettuce extracts. Frontiers in Microbiology.. 7

Zhang YL, Rataj K, Simpson GG, Tong L. 2016. Crystal structure of the SPOC domain of the arabidopsis flowering regulator FPA. PLoS ONE. 11:ArticleNo.e0160694.

Mitra A, Flynn KJ, Tillmann U, Raven JA, Caron D, Stoecker DK, Not F, Hansen PJ, Hallegraeff G, Sanders R et al.. 2016. Defining planktonic protist functional groups on mechanisms for energy and nutrient acquisition: incorporation of diverse mixotrophic strategies. Protist. 167:106-120.

Wells B, Thomson S, Ensor H, Innes EA, Katzer F. 2016. Development of a sensitive method to extract and detect low numbers of Cryptosporidium oocysts from adult cattle faecal samples. Veterinary Parasitology. 227:26-29.

Faccioli M, Hanley N, Torres C, Riera A. 2016. Do we care about sustainability? An analysis of time sensitivity of social preferences under environmental time-persistent effects Journal of Environmental Management. 117:356-364.

Zhang RX, Tucker MR, Burton RA, Shirley NJ, Little A, Morris J, Milne L, Houston K, Hedley PE, Waugh R et al.. 2016. The dynamics of transcript abundance during cellularization of developing barley endosperm. Plant Physiology. 170:1549-1565.

Barnes A, Sutherland LA, Toma L, Matthews KB, Thomson S. 2016. The effect of the Common Agricultural Policy Reforms on intentions towards food production: evidence from livestock farmers. Land Use Policy. 50:548-558.

Campbell R, Freitag S, Bryan GJ, Stewart D, Taylor MA. 2016. Environmental and gentic factors associated with solanesol accumulation in potato leaves. Frontiers in Plant Science. 7

Li X, Toma Y, Yeluripati J, Iwasaki S, Bellingrath-Kimura SD, Jones EO, Hatano R. 2016. Estimating agro-ecosystem carbon balance of northern Japan, and comparing the change in carbon stock by soil inventory and net biome productivity. Science of the Total Environment. 554:293-302.

Zhao G, Hoffman H, Yeluripati J, Xenia S, Nendal C, Coucheney E, Kuhnert M, Tao F, Constantin J, Raynal H et al.. 2016. Evaluating the precision of eight spatial sampling schemes in estimating regional means of simulated yield for two crops. Environmental Modelling and Software. 80:100-112.

Nilsson C, Aradottir A, Hagen D, Halldorsson G, Hoegh K, Mitchell RJ, Raulund-Rasmussen K, Svavarsdottir K, Tolvanen A, Wilson SD. 2016. Evaluating the process of ecological restoration. Restoration Ecology. 21:ArticleNo.41..

Zhang Z, Troldborg M, Yates K, Osprey M, Kerr C, Hallett PD, Baggaley N, Rhind SM, Dawson JJC, Hough RL. 2016. Evaluation of spot and passive sampling for monitoring, flux estimation and risk assessment of pesticides within the constraints of a typical regulatory monitoring scheme. Science of the Total Environment. 569-570:1369-1379.

Vicente CSL, Nascimento FX, Barbosa P, Ke HM, Tsai IJ, Hirao T, Cock PJA, Kikuchi T, Hasegawa K, Mota M. 2016. Evidence for an opportunistic and endophytic lifestyle of the Bursaphelenchus xylophilus-associated bacteria Serratia marcescens PWN146 isolated from wilting Pinus pinaster. Microbial Ecology. 72:669-681.

Clark LF, Thivierge MC, Kidd CA, McGeoch SC, Abraham P, Pearson DWM, Horgan GW, Holtrop G, Thies F, Lobley GE. 2016. Fish oil supplemented for 9 months does not improve glycaemic control or insulin sensitivity in subjects with impaired glucose regulation: a parallel randomised controlled trial. British Journal of Nutrition. 115:75-86.

Eves-van den Akker S, Laetsch DR, Thorpe P, Lilley CJ, Danchin EGJ, Da Rocha M, Rancurel C, Holroyd NE, Cotton JA, Szitenberg A et al.. 2016. The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biology. 17

Oakey H, Cullis B, Thompson R, Comadran J, Halpin C, Waugh R. 2016. Genomic selection in multi-environment crop trials. G3- Genes Genomes Genetics. 6:1313-1326.

Pritchard L, Glover RH, Elphinstone JG, Toth IK. 2016. Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens. Analytical Methods. 8:12-24.

Pyhala A, Fernandez-Llamazares A, Lehvavirta H, Byg A, Ruiz-Mallen I, Salpeteur M, Thorton TF. 2016. Global environmental change: local perceptions, understandings, and explanations. Ecology and Society. 21:ArticleNo.25.

Bajhaiya AK, Dean AP, Driver T, Trivedi DK, Rattray NW, Allwood JW, Goodacre R, Pittman JK. 2016. High-throughput metabolic screening of microalgae genetic variation in response to nutrient limitation. Metabolomics. 12:ArticleNo.9.

Thomas CL, Graham NS, Hayden R, Meacham MC, Neugebauer K, Nightingale M, Dupuy LX, Hammond JP, White PJ, Broadley MR. 2016. High-throughput phenotyping (HTP) identifies seedling root traits linked to variation in seed yield and nutrient capture in field-grown oilseed rape (Brassica napus L.). Annals of Botany. 118:655-665.

Jost M, Taketa S, Mascher M, Himmelbach A, Yuo T, Shahinnia F, Rutten T, Druka A, Schmutzer T, Steuernagel B et al.. 2016. A homolog of Blade-On-Petiole 1 and 2 (BOP1/2) controls internode length and homeotic changes of the barley inflorescence. Plant Physiology. 171:1113-1127.

Mitchell RJ, Pakeman RJ, Broome A, Beaton JK, Bellamy PE, Brooker RW, Ellis CJ, Hester AJ, Hodgetts NG, Iason GR et al.. 2016. How to replicate the functions and biodiversity of a threatened tree species? the case of Fraxinus excelsior in Britain Ecosystems. 19:573-586.

Demars BOL, Gislason GM, Olafsson JS, Manson JR, Friberg N, Hood JM, Thompson JJD, Freitag TE. 2016. Impact of warming on CO2 emissions from streams countered by aquatic photosynthesis. Nature Geoscience. 9:758-761.

De Santis C, Martin SAM, Dehler CE, Iannetta PPM, Leeming D, Tocher DR. 2016. Influence of dietary inclusion of a wet processed faba bean protein isolate on post-smolt Atlantic salmon (Salmo salar). Aquaculture. 465:124-133.

Adams MA, Turnbull TL, Sprent JI, Buchmann N. 2016. Legumes are different: Leaf nitrogen, photosynthesis, and water use efficiency. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 113:4098-4103.

Pakeman RJ, Alexander J, Brooker R, Cummins R, Fielding D, Gore S, Hewison R, Mitchell R, Moore E, Erford K et al.. 2016. Long-term impacts of nitrogen deposition on coastal plant communities. Environmental Pollution. 221:337-347.

Schillereff DN, Boyle JF, Toberman H, Adams JL, Bryant CL, Chiverrell R, Helliwell RC, Keenan P, Lilly A, Tipping E. 2016. Long-term macronutrient stoichiometry of UK ombrotrophic peatlands. Science of the Total Environment. 572:1561-1572.

Allinson D, Irvine KN, Edmondson JL, Tiwary A, Hill G, Morris J, Bell M, Davies ZG, Firth SK, Fisher J et al.. 2016. Measurement and analysis of household carbon: the case of a UK city. Applied Energy. 164:871-881.

Thompson CW, Aspinall P, Roe J, Robertson L, Miller DR. 2016. Mitigating stress and supporting health in deprived urban communities: the importance of green space and the social environment. International Journal of Environmental Research and Public Health. 13:ArticleNo.440.

Mollon LC, Norton GJ, Trakal L, Moreno-Jimenez E, Elouali FZ, Hough RL, Beesley L. 2016. Mobility and toxicity of heavy metal(loid)s arising from contaminated wood ash application to a pasture grassland soil. Environmental Pollution. 218:419-427.

Tak N, Awasthi E, Bissa G, Meghwal RR, James EK, Sprent JS, Gehlot HS. 2016. Multi locus sequence analysis and symbiotic characterization of novel Ensifer strains nodulating Tephrosia spp. In the Indian Thar Desert. Systematic and Applied Microbiology. 39:534-545.

Ruane AC, Hudson NI, Asseng S, Camarrano D, Ewert F, Martre P, Boote KJ, Thorburn PJ, Aggarwal PK, Angulo C et al.. 2016. Multi-wheat-model ensemble responses to interannual climate variability. Environmental Modelling and Software. 81:86-101.

Helfer G, Ross AW, Thomson LM, Mayer CD, Stoney PN, McCaffery PJ, Morgan PJ. 2016. A neuroendocrine role for chemerin in hypothalamic remodelling and photoperiodic control of energy balance. Scientific Reports. 6

Koutsovoulos G, Kumar S, Laetsch DR, Stevens L, Daub J, Conlon C, Maroon H, Thomas F, Aboobaker AA, Blaxter M. 2016. No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini. Proceedings of the National Academy of Sciences of the United States of America. 1135053

Boevink PC, McLellan H, Gilroy EM, Naqvi S, He Q, Yang LN, Wang XD, Turnbull D, Armstrong MR, Tian ZD et al.. 2016. Oomycetes seek help from the plant: Phytophthora infestans effectors target host susceptibility factors. Molecular Plant. 9:636-638.

Sjogersten S, Caul S, Daniell TJ, Jurd APS, O'Sullivan OS, Stapleton CS, Titman JJ. 2016. Organic matter chemistry controls greenhouse gas emissions from permafrost peatlands. Soil Biology and Biochemistry. 98:42-53.

Schimmelrnann A, Qi HP, Coplen TB, Brand WA, Fong J, Meier-Augenstein W, Kemp HF, Toman B, Ackermann A, Assonov S et al.. 2016. Organic reference materials for hydrogen, carbon, and nitrogen stable isotope-ratio measurements: caffeines, n-alkanes, fatty acid methyl esters, glycines, L-valines, polyethylenes, and oils. Analytical Chemistry. 88:4294-4302.

George TS, Hinsinger P, Turner BL. 2016. Phosphorus in soils and plants - facing phosphorus scarcity. Plant and Soil. 401:1-6.

Boevink PC, Wang XD, McLellan H, He Q, Naqvi S, Armstrong MR, Zhang W, Hein I, Gilroy EM, Tian ZD et al.. 2016. A Phytophthora infestans RXLR effector targets plant PP1c isoforms that promote late blight disease. Nature Communications. 7

Houston K, Tucker MR, Chowdhury J, Shirley N, Little A. 2016. The plant cell wall: a complex and dynamic structure as revealed by the responses of genes under stress conditions. Frontiers in Plant Science. 7

Yang LN, McLellan H, Naqvi S, He Q, Boevink PC, Armstrong M, Giuliani LM, Zhang W, Tian ZD, Zhan JS et al.. 2016. Potato NPH3/RPT2-like protein StNRL1, targeted by a phytophthora infestans RXLR effector, is a susceptibility factor. Plant Physiology. 171:645-657.

Mortimer CL, Misawa N, Ducreux L, Campbell R, Bramley PM, Taylor M, Fraser PD. 2016. Product stability and sequestration mechanisms in Solanum tuberosum engineered to biosynthesize high value ketocarotenoids. Plant Biotechnology Journal. 14:140-152.

Tur JN, Copus A. 2016. A proposal for classification of non-urban regions in the European Union. Cuadernos Geograficos. 55:92-124.

Zhang Y, Thomas CL, Xiang JX, Long Y, Wang XH, Zou J, Luo ZL, Ding GD, Cai HM, Graham NS et al.. 2016. QTL meta-analysis of root traits in Brassica napus under contrasting phosphorus supply in two growth systems. Scientific Reports. 6

Mitchell RJ, Urpeth HM, Britton AJ, Black HIJ, Taylor AR. 2016. Relative importance of local- and large-scale drivers of alpine soil microarthropod communities. Oecologia. 182:913-924.

Douglas DJT, Buchanan GM, Thompson P, Smith T, Cole T, Amar A, Fielding DA, Redpath SM, Wilson JD. 2016. Reply to comment on: Vegetation burning for game management in the UK uplands is increasing and overlaps spatially with soil carbon and protected areas. Biological Conservation. 195:295-296.

Thomas CL, Alcock TD, Graham NS, Hayden R, Matterson S, Wilson L, Young SD, Dupuy LX, White PJ, Hammond JP et al.. 2016. Root morphology and seed and leaf ionomic traits in a Brassica napus L. diversity panel show wide phenotypic variation and are characteristic of crop habit. BMC Plant Biology.. 16

Kumar M, Wightman R, Atanassov I, Gupta A, Hurst CH, Hemsley PA, Turner S. 2016. S-acylation of the cellulose synthase complex is essential for its plasma membrane localization. Science. 353:166-169.

Borjesson G, Menichetti L, Thornton B, Campbell CD, Katterer T. 2016. Seasonal dynamics of the soil microbial community: assimilation of old and young carbon sources in a long-term field experiment as revealed by natural C-13 abundance. European Journal of Soil Science. 67:79-89.

Thomas-Sharma S, Abdurahman A, Ali S, Andrade-Piedra JL, Bao S, Charkowski AO, Crooke D, Kadian M, Kromann P, Struik PC et al.. 2016. Seed degeneration in potato: the need for an integrated seed health strategy to mitigate the problem in developing countries. Plant Pathology. 65:3-16.

Callaby R, Toye P, Jennings A, Thumbi SM, Coetzer JAW, Van Wyk ICC, Hanotte O, Mbole-Kariuki MN, Bronsvoort BMD, Kruuk LEB et al.. 2016. Seroprevalence of respiratory viral pathogens of indigenous calves in Western Kenya. Research in Veterinary Science. 108:120-124.

Ross LC, Austrheim G, Asheim LJ, Bjarnason G, Feilberg J, Fosaa AM, Hester AJ, Holand O, Jonsdottir IS, Mortensen LE et al.. 2016. Sheep grazing in the North Atlantic region: A long-term perspective on environmental sustainability. Ambio. 45:551-566.

Skelsey P, Elphinstone JG, Saddler GS, Wale SJ, Toth IK. 2016. Spatial analysis of blackleg-affected seed potato crops in Scotland. Plant Pathology. 65:570-576.

Tilsner J, Nicolas W, Rosado A, Bayer EM. 2016. Staying tight: Plasmodesmal membrane contact sites and the control of cell-to-cell connectivity in plants. Annual Review of Plant Biology.

Tilsner J, Nicolas W, Rosado A, Bayer EM. 2016. Staying tight: Plasmodesmal membrane contact sites and the control of cell-to-cell connectivity in plants. Annual Review of Plant Biology. 67:337-364.

Perez-Sancho J, Tilsner J, Samuels AL, Botella MA, Bayer EM, Rosado A. 2016. Stitching organelles: organization and function of specialized membrane contact sites in plants. Trends in Cell Biology. 26:705-717.

Austrheim G, Speed JDM, Evju M, Hester AJ, Holand O, Loe LE, Martinsen V, Mobaek R, Mulder SJH, Thompson DBA et al.. 2016. Synergies and trade-offs between ecosystem services in an alpine ecosystem grazed by sheep - an experimental approach. Basic and Applied Ecology. 17:596-608.

Tsai IJ, Tanaka R, Kanzaki N, Akiba M, Yokoi T, Espada M, Jones JT, Kikuchi T. 2016. Transcriptional and morphological changes in the transition from mycetophagous to phytophagous phase in the plant-parasitic nematode Bursaphelenchus xylophilus. Molecular Plant Pathology. 17:77-83.

Cammarano D, Rotter RP, Asseng S, Ewert F, Wallach D, Martre P, Hatfield JL, Jones JW, Rosenzweig C, Ruane AC et al.. 2016. Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research. 198:80-92.

Stone D, Costa D, Daniell TJ, Mitchell SM, Topp CFE, Griffiths BS. 2016. Using nematode communities to test a European scale soil biological monitoring programme for policy development. Applied Soil Ecology. 97:78-85.

Van Weymers PSM, Baker K, Chen XW, Harrower B, Cooke DEL, Gilroy EM, Birch PRJ, Thilliez GJA, Lees AK, Lynott JS et al.. 2016. Utilizing 'Omic' technologies to identify and prioritize novel sources of resistance to the oomycete pathogen Phytophthora infestans in potato germplasm collections. Frontiers in Plant Science. 7

Crozier L, Hedley PE, Morris J, Wagstaff C, Andrews SC, Toth I, Jackson RW, Holden N. 2016. Whole-transcriptome analysis of verocytotoxigenic Escherichia coli O157:H7 (Sakai) suggests plant-species-specific metabolic responses on exposure to spinach and lettuce extracts. Frontiers in Microbiology. 7

2015

Macedo D, Tavares L, McDougall GJ, Miranda HV, Stewart D, Ferreira RB, Tenreiro S, Outeiro TF, Santos CN. 2015. (Poly)phenols protect from alpha-synuclein toxicity by reducing oxidative stress and promoting autophagy. Human Molecular Genetics. 24:1717-1732.

Sarkki S, Tinch R, Niemelä J, Heink U, Waylen KA, Timaeus J, Young JC, Watt AD, Neßhöver C, Van Den Hove S. 2015. Adding ‘iterativity’ to the credibility, relevance, legitimacy: A novel scheme to highlight dynamic aspects of science-policy interfaces. Environmental Science and Policy. 54:505-512.

Adams JL, Tipping E, Bryant CL, Helliwell RC, Toberman H, Quinton J. 2015. Aged riverine particulate organic carbon in four UK catchments. Science of the Total Environment. 536:648-654.

Harding AE, Rivington M, Mineter MJ, Tett SFB. 2015. Agro-meteorological indices and climate model uncertainty over the UK. Climatic Change. 128:113-126.

Sarkies P, Selkirk ME, Jones JT, Blok VC, Boothby T, Goldstein B, Hanelt B, Ardila-Garcia A, Fast NM, Schiffer PM et al.. 2015. Ancient and novel small RNA pathways compensate for the loss of piRNAs in multiple independent nematode lineages. PLoS Biology. 13:e1002061.

Travis AJ, Norton GJ, Datta S, Sarma R, Dasgupta T, Savio FL, Macaulay M, Hedley PE, McNally KL, Sumon MH et al.. 2015. Assessing the genetic diversity of rice originating from Bangladesh, Assam and West Bengal. Rice. 8

Herfindal I, Tremblay JP, Hester AJ, Lande US, Wam HK. 2015. Associational relationships at multiple spatial scales affect forest damage by moose. Forest Ecology and Management. 348:97-107.

Zhang RX, Calixto CPG, Tzioutziou NA, James AB, Simpson CG, Guo WB, Marquez Y, Kalyna M, Patro R, Eyras E et al.. 2015. AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana. New Phytologist. 208:96-101.

Dawson IK, Russell J, Powell W, Steffenson B, Thomas WTB, Waugh R. 2015. Barley: a translational model for adaptation to climate change. New Phytologist. 206:913-931.

Martin-Fernandez JA, Hron K, Templ M, Filzmoser P, Palarea-Albaladejo J. 2015. Bayesian-multiplicative treatment of count zeros in compositional data sets. Central European Journal of Biology. 15:134-158.

Yao HY, Chapman SJ, Thornton B, Paterson E. 2015. C-13 PLFAs: a key to open the soil microbial black box? Plant and Soil. 392:3-15.

Wiesel L, Dubchak S, Turnau K, Broadley MR, White PJ. 2015. Caesium inhibits the colonization of Medicago truncatula by arbuscular mycorrhizal fungi. Journal of Environmental Radioactivity. 141:57-61.

Madigan A, Belka M, Taylor AFS, Kirisits T, Cleary M, Nguyen D, Elfstrand M, Woodward S. 2015. Can Hymenoscyphus fraxineus infect hardy members of the Oleaceae other than ash species? Forest Pathology. 45:426-429.

Van Straaten O, Corre MD, Wolf K, Tchienkoua M, Cuellar E, Matthews RB, Veldkamp E. 2015. Conversion of lowland tropical forests to tree cash crop plantations loses up to one-half of stored soil organic carbon. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112:9956-9960.

Ewert F, Rotter RP, Bindi M, Webber H, Trnka M, Kersebaum KC, Olesen JE, Van Ittersum MK, Janssen S, Rivington M et al.. 2015. Crop modelling for integrated assessment of risk to food production from climate change. Environmental Modelling and Software. 72:287-303.

Bowler DE, Haase P, Kroncke I, Tackenberg O, Bauer HG, Brendel C, Brooker RW, Gerisch M, Henle K, Hickler T et al.. 2015. A cross-taxon analysis of the impact of climate change on abundance trends in central Europe. Biological Conservation. 187:41-50.

Toberman H, Tipping EW, Boyle JF, Helliwell RC, Lilly A, Henrys PA. 2015. Dependence of ombrotrophic peat nitrogen on phosphorus and climate. Biogeochemistry. 125:11-20.

Reavy B, Swanson MM, Cock PJA, Dawson LA, Freitag TE, Singh BK, Torrance L, Mushegain AR, Taliansky M. 2015. Distinct circular single-stranded DNA viruses exist in different soil types. Applied and Environmental Microbiology. 81:3934-3945.

Thornton B, Martin G, Procee M, Miller DR, Coull MC, Yao HY, Chapman SJ, Hudson G, Midwood AJ. 2015. Distributions of carbon and nitrogen isotopes in Scotland's topsoil: a national-scale study. European Journal of Soil Science. 66:1002-1011.

Thomas D, Finan C, Newport MJ, Jones S. 2015. DNA-entropy reveals a significant difference in complexity between housekeeping and tissue specific gene promoters. Computational Biology and Chemistry. 58:19-24.

Tian D, Asseng S, Martinez CJ, Misra V, Cammarano D, Ortiz B. 2015. Does decadal climate variation influence Wheat and Maize production in the southeast USA? Agricultural Forest Meteorology. 204:1-9.

Thomas WTB. 2015. Drought-resistant cereals: impact on water sustainability and nutritional quality. Proceedings of the Nutrition Society. 74:191-197.

Deng WN, Hallett PD, Jeng DS, Squire GR, Toorop PE, Iannetta PPM. 2015. The effect of natural seed coatings of Capsella bursa-pastoris L. Medik. (shepherd's purse) on soil-water retention, stability and hydraulic conductivity. Plant and Soil. 387:167-176.

Zhao G, Hoffmann H, van Bussel LGJ, Enders A, Specka X, Sosa C, Yeluripati JB, Tao FL, Constantin J, Raynal H et al.. 2015. Effect of weather data aggregation on regional crop simulation for different crops, production conditions, and response variables. Climate Research. 65:141-157.

Fang SB, Cammarano D, Zhou GS, Tan KY, Ren SX. 2015. Effects of increased day and night temperature with supplemental infrared heating on winter wheat growth in North China. European Journal of Agronomy. 64:67-77.

Moynihan EL, Richards KG, Brennan FP, Tyrrel SF, Ritz K. 2015. Enteropathogen survival in soil from different land-uses is predominantly regulated by microbial community composition. Applied Soil Ecology. 89:76-84.

Parkinson N, Pritchard L, Bryant R, Toth IK, Elphinstone J. 2015. Epidemiology of Dickeya dianthicola and Dickeya solani in ornamental hosts and potato studied using variable number tandem repeat analysis. European Journal of Plant Pathology. 141:63-70.

Pourkheirandish M, Hensel G, Kilian B, Senthil N, Chen G, Sameri M, Azhaguvel P, Sakuma S, Dhanagond S, Sharma R et al.. 2015. Evolution of the seed dispersal system in barley. Cell. 162:527-539.

Tamburic B, Evenhuis CR, Suggett DJ, Larkum AWD, Raven JA, Ralph PJ. 2015. Gas transfer controls carbon limitation during biomass production by marine microalgae. Chemsuschem. 8:2727-2736.

Looseley ME, Keith R, Guy D, Barral-Baron G, Thirugnanasambandam A, Harrap D, Werner P, Newton AC. 2015. Genetic mapping of resistance to Rhynchosporium commune and characterisation of early infection in a winter barley mapping population. Euphytica. 203:337-347.

Love AJ, Makarov VV, Sinitsyna OV, Shaw J, Yaminsky IV, Kalinina NO, Taliansky ME. 2015. A genetically modified tobacco mosaic virus that can produce gold nanoparticles from a metal salt precursor. Frontiers in Plant Science. 6

Houston K, Burton RA, Sznajder B, Rafalski AJ, Dhugga KS, Mather DE, Taylor J, Steffenson BJ, Waugh R, Fincher GB. 2015. A genome-wide association study for culm cellulose content in barley reveals candidate genes co-expressed with members of the cellulose synthase a gene family. PLoS ONE. 10:e0130890.

Yeluripati JB, del Prado A, Sanz-Cobena A, Rees R, Li C, Chadwick D, Tilston E, Topp CFE, Cardenas L, Ingraham P et al.. 2015. Global Research Alliance Modelling Platform (GRAMP): An open web platform for modelling greenhouse gas emissions from agro-ecosystems. Computers and Electronics in Agriculture. 111:112-120.

Main CE, Ruhl HA, Jones DOB, Yool A, Thornton B, Mayor DJ. 2015. Hydrocarbon contamination affects deep-sea benthic oxygen uptake and microbial community composition. Deep Sea Research Part 1 - Oceanographic Research Papers. 100:79-87.

Ma L, Bartholome A, Tong MH, Qin ZW, Yu Y, Shepherd T, Kyeremeh K, Deng H, O'Hagan D. 2015. Identification of a fluorometabolite from Streptomyces sp MA37: (2R3S4S)-5-fluoro-2,3,4-trihydroxypentanoic acid. Chemical Science. 6:1414-1419.

Lukhovitskaya NI, Cowan GH, Vetukuri RR, Tilsner J, Torrance L, Savenkov EI. 2015. Importin-alpha-mediated nucleolar localization of potato mop-top virus TRIPLE GENE BLOCK1 (TGB1) protein facilitates virus systemic movement, whereas TGB1 self-interaction is required for cell-to-cell movement in Nicotiana benthamiana. Plant Physiology. 167:738-752.

Crittenden PD, Scrimgeour CM, Minnullina G, Sutton MA, Tang YS, Theobald MR. 2015. Lichen response to ammonia deposition defines the footprint of a penguin rookery. Biogeochemistry. 122:295-311.

Jurado NV, Tanner AE, Blevins SR, McNair HM, Mayes RW, Lewis RM. 2015. Long-chain alcohols did not improve predictions of the composition of tall fescue and red clover mixtures over n-alkanes alone. Grass and Forage Science. 70:499-506.

Chamen WCT, Moxey AP, Towers W, Balana BB, Hallett PD. 2015. Mitigating arable soil compaction: A review and analysis of available cost and benefit data. Soil and Tillage Research. 146:10-25.

Vanga BR, Ramakrishnan P, Butler RC, Toth IK, Ronson CW, Jacobs JME, Pitman AR. 2015. Mobilization of horizontally acquired island 2 is induced in planta in the phytopathogen Pectobacterium atrosepticumSCRI1043 and involves the putative relaxase ECA0613 and quorum sensing. Environmental Microbiology. 17:4730-4744.

Viger M, Hancock RD, Miglietta F, Taylor G. 2015. More plant growth but less plant defence? First global gene expression data for plants grown in soil amended with biochar Global Change Biology Bioenergy. 7:658-672.

Amar D, Frades I, Diels T, Zaltzman D, Ghatan N, Hedley PE, Alexandersson E, Tzfadia O, Shamir R. 2015. The MORPH-R web server and software tool for predicting missing genes in biological pathways. Physiologia Plantarum. 155:12-20.

Martre P, Wallach D, Asseng S, Ewert F, Jones JW, Rotter RP, Boote KJ, Ruane AC, Thorburn PJ, Cammarano D et al.. 2015. Multimodel ensembles of wheat growth: many models are better than one. Global Change Biology. 21:911-925.

Sanhueza M, Chai A, Smith C, McCray BA, Simpson TI, Taylor JP, Pennetta G. 2015. Network analyses reveal novel aspects of ALS pathogenesis. PLoS Genetics. 11:e1005107.

Gontikaki E, Thornton B, Cornulier T, Witte U. 2015. Occurrence of priming in the degradation of lignocellulose in marine sediments. PLoS ONE. 10:e0143917.

Mei Y, Thorpe P, Guzha A, Haegeman A, Blok VC, MacKenzie K, Gheysen G, Jones JT, Mantelin S. 2015. Only a small subset of the SPRY domain gene family in Globodera pallida is likely to encode effectors, two of which suppress host defences induced by the potato resistance gene Gpa2. Nematology. 17:409-424.

Campbell R, Morris WL, Misawa N, Ducreux LJM, Morris JA, Hedley PE, Fraser PD, Taylor MA. 2015. Optimising ketocarotenoid production in potato tubers: effect of genetic background, transgene combinations and environment. Plant Science. 234:27-37.

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Fisher DO, Johnson CN, Lawes MJ, Fritz SA, McCallum H, Blomberg SP, van der Wal J, Abbott B, Frank A, Legge S et al.. 2015. Response to commentary by Woinarski (Critical-weight-range marsupials in northern Australia are declining: a commentary on Fisher et al. (2014) 'The current decline of tropical marsupials in Australia: is history repeating?') Global Ecology and Biogeography. 24:123-125.

Igartua E, Mansour E, Cantalapiedra CP, Contreras-Moreira B, Gracia MP, Fuster P, Escribano J, Molina-Cano JL, Moralejo M, Ciudad FJ et al.. 2015. Selection footprints in barley breeding lines detected by combining genotyping-by-sequencing with reference genome information. Molecular Breeding. 35:Article11.

Echavarri-Bravo V, Paterson L, Aspray TJ, Porter JS, Winson MK, Thornton B, Hartl MG. 2015. Shifts in the metabolic function of benthic estuarine microbial community following a single pulse exposure to silver nanoparticles. Environmental Pollution. 201:91-99.

Nazaries L, Tottey W, Robinson LJ, Khachane A, Al-Soud WA, Sorensen S, Singh BK. 2015. Shifts in the microbial community structure explain the response of soil respiration to land-use but not to climate warming. Soil Biology and Biochemistry. 89:123-134.

Demars BOL, Thompson JJD, Manson JR. 2015. Stream metabolism and the open diel oxygen method: principles, practice and perspectives. Limnology and Oceanography: Methods. 13:356-374.

Jarvis SG, Woodward S, Taylor AFS. 2015. Strong altitudinal partitioning in the distributions of ectomycorrhizal fungi along a short (300 m) elevation gradient. New Phytologist. 206:1145-1155.

Tilsner J. 2015. Techniques for RNA in vivo imaging in plants. Journal of Microscopy. 258:1-5.

Pirttioja N, Carter TR, Fronzek S, Bindi M, Hoffmann H, Palosuo T, Ruiz-Ramos M, Tao F, Trnka M, Acutis M et al.. 2015. Temperature and precipitation effects on wheat yield across a European transect: a crop model ensemble analysis using impact response surfaces. Climate Research. 65:87-105.

Kamoun S, Furzer O, Jones JDG, Judelson HS, Ali GS, Dalio RJD, Roy SG, Schena L, Zambounis A, Panabieres F et al.. 2015. The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.

Fischer A, Weldesemaet YT, Czajkowski M, Tadie D, Hanley N. 2015. Trophy hunters' willingness to pay for wildlife conservation and community benefits. Conservation Biology. 29:1111-1121.

He Q, McLellan H, Boevink PC, Sadanandom A, Xie CH, Birch PRJ, Tian ZD. 2015. U-box E3 ubiquitin ligase PUB17 acts in the nucleus to promote specific immune pathways triggered by Phytophthora infestans. Journal of Experimental Botany. 66:3189-3199.

Burrells A, Benavides J, Canton G, Garcia JL, Bartley PM, Nath M, Thomson J, Chianini F, Innes EA, Katzer F. 2015. Vaccination of pigs with the S48 strain of Toxoplasma gondii - safer meat for human consumption. Veterinary Research. 46

Hoffmann H, Zhao G, van Bussel LGJ, Enders A, Specka X, Sosa C, Yeluripati JB, Tao F, Constantin J, Raynal H et al.. 2015. Variability of effects of spatial climate data aggregation on regional yield simulation by crop models. Climate Research. 65:53-69.

Douglas DJT, Buchanan GM, Thompson PS, Amar A, Fielding DA, Redpath SM, Wilson JD. 2015. Vegetation burning for game management in the UK uplands is increasing and overlaps spatially with soil carbon and protected areas. Biological Conservation. 191:243-250.

Toth IK, Humphris S, Campbell E, Pritchard L. 2015. Why genomics research on Pectobacterium and Dickeya makes a difference. American Journal of Potato Research. 92:218-222.

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De Maayer P, Chan WY, Rubagotti E, Venter SN, Toth IK, Birch PRJ, Coutinho TA. 2014. Analysis of the Pantoea ananatis pan-genome reveals factors underlying its ability to colonize and interact with plant, insect and vertebrate hosts. BMC Genomics. 15:404.

Arpaia S, Messean A, Birch NA, Hokannen H, Hartel S, Van Loon J, Lovei G, Park J, Spreafico H, Squire GR et al.. 2014. Assessing and monitoring impacts of genetically modified plants on agro-ecosystems: the approach of the AMIGA project. Entomologia. 2:79-86.

Taylor AR, Taylor AFS. 2014. Assessing daily egestion rates in earthworms: using fungal spores as a natural soil marker to estimate gut transit time. Biology and Fertility of Soils. 50:179-183.

Troldborg M, Hough RL, Heslop S. 2014. Assessing the sustainability of renewable energy technologies using multi-criteria analysis: Suitability of approach for national-scale assessments and associated uncertainties. Renewable and Sustainable Energy Reviews. 39:1173-1184.

Vinten AJA, Loades K, Addy S, Richards S, Stutter MI, Cook Y, Watson H, Taylor C, Abel C, Baggaley N et al.. 2014. Assessment of the use of sediment fences for control of erosion and sediment phosphorus loss after potato harvesting on sloping land. Science of the Total Environment. 468-469:1234-1244.

Tipping E, Benham S, Boyle JF, Crow P, Davies J, Fischer U, Guyatt H, Helliwell RC, Jackson-Blake L, Lawlor AJ et al.. 2014. Atmospheric deposition of phosphorus to land and freshwater. Environmental Science: Processes and Impacts. 16:1608-1617.

Mendiondo GM, Medhurst A, van Roermund CW, Zhang XB, Devonshire J, Scholefield D, Fernandez J, Axcell B, Ramsay L, Waterham HR et al.. 2014. Barley has two peroxisomal ABC transporters with multiple functions in beta-oxidation. Journal of Experimental Botany. 65:4833-4847.

Martin-Fernandez JA, Hron K, Templ M, Filzmoser P, Palarea-Albaladejo J. 2014. Bayesian-multiplicative treatment of count zeros in compositional data sets. Central European Journal of Biology. 15:134-158.

Banwart S, Black HIJ, Cai ZC, Gicheru P, Joosten H, Victoria R, Milne E, Noellemeyer E, Pascual U, Nziguheba G et al.. 2014. Benefits of soil carbon: report on the outcomes of an international scientific committee on problems of the environment rapid assessment workshop. Carbon Management. 5:185-192.

Bourne EC, Bocedi G, Travis JMJ, Pakeman RJ, Brooker R, Schiffers K. 2014. Between migration load and evolutionary rescue: dispersal, adaptation and the response of spatially structured populations to environmental change. Proceedings of the Royal Society Series B. 281:1471-2954.

Tumwesige V, Fulford D, Davidson GC. 2014. Biogas appliances in Sub-Sahara Africa. Biomass and Bioenergy. 70:40-50.

Makarov VV, Makarova SS, Love AJ, Sinitsyna OV, Dudnik A, Yaminsky I, Taliansky ME, Kalinina NO. 2014. Biosynthesis of stable iron nanoparticles in aqueous extracts of Hordeum vulgare and Rumex acetosa plants. Langmuir. 30:5982-5988.

Gilbert L, Aungier J, Tomkins JL. 2014. Climate of origin affects tick (Ixodes ricinus) host-seeking behavior in response to temperature: implications for resilience to climate change? Ecology and Evolution. 4:1186-1198.

Shaw J, Love AJ, Makarova SS, Kalinina NO, Harrison BD, Taliansky ME. 2014. Coilin, the signature protein of Cajal bodies, differentially modulates the interactions of plants with viruses in widely different taxa. Nucleus-Austin. 5:85-94.

Shyntum DY, Venter SN, Moleleki LN, Toth I, Coutinho TA. 2014. Comparative genomics of type VI secretion systems in strains of Pantoea ananatis from different environments. BMC Genomics. 15:ArticleNo163.

Benanti G, Saunders M, Tobin B, Osborne B. 2014. Contrasting impacts of afforestation on nitrous oxide and methane emissions. Agricultural and Forest Meteorology. 198:82-93.

Fisher DO, Johnson CN, Lawes MJ, Fritz SA, McCallum H, Blomberg SP, van der Wal J, Abbott B, Frank A, Legge S et al.. 2014. The current decline of tropical marsupials in Australia: is history repeating? Global Ecology and Biogeography. 23:181-190.

Morris WL, Hancock RD, Ducreux LJM, Morris JA, Usman M, Verrall SR, Bryan GJ, McNicol JW, Hedley PE, Taylor MA. 2014. Day length dependent restructuring of the leaf transcriptome and metabolome in potato genotypes with contrasting tuberisation phenotypes. Plant Cell and Environment. 37:1351-1363.

Palomares-Rius JE, Hirooka Y, Tsai IJ, Masuya H, Hino A, Kanzaki N, Jones JT, Kikuchi T. 2014. Distribution and evolution of glycoside hydrolase family 45 cellulases in nematodes and fungi. BMC Evolutionary Biology. 14

Pertry I, Nothegger C, Sweet J, Kuiper H, Davies HV, Iserentant D, Hull R, Mezzetti B, Messens K, De Loose M et al.. 2014. DTREEv2, a computer-based support system for the risk assessment of genetically modified plants. New Biotechnology. 31:166-171.

Trudgill DL, Phillips MS, Elliott MJ. 2014. Dynamics and management of the white potato cyst nematode Globodera pallida in commercial potato crops. Annals of Applied Biology. 164:18-34.

Devereux G, Tagiyeva N, Turner S, Ayres JG, Seaton A, Hudson G, Hough RL, Campbell CD, Shand CA. 2014. Early-life residential exposure to soil components in rural areas and childhood respiratory health and allergy. Science of the Total Environment. 466-467:338-344.

Jones J, Witek K, Verweij W, Jupe F, Cooke DEL, Dorling S, Tomlinson L, Smoker M, Perkins S, Foster S. 2014. Elevating crop disease resistance with cloned genes. Philosophical Transactions of the Royal Society B, Biological Sciences.. 369:ArticleNo20130087.

Rossez Y, Holmes A, Lodberg-Pedersen H, Birse L, Marshall J, Willats WGT, Toth IK, Holden NJ. 2014. Escherichia coli common pilus (ECP) targets arabinosyl residues in plant cell walls to mediate adhesion to fresh produce plants. Journal of Biological Chemistry. 289:34349-34365.

Amar D, Frades I, Danek A, Goldberg T, Sharma SK, Hedley P, Proux-Wera E, Andreasson E, Shamir R, Tzfadia O et al.. 2014. Evaluation and integration of functional annotation pipelines for newly sequenced organisms: the potato genome as a test case. BMC Plant Biology. 14:329.

Albon S, Turner K. 2014. Evolving a conceptual framework to explore the links between human wellbeing and the environment. Environmental Scientist. 23:9-14.

Frank ASK, Johnson CN, Potts JM, Fisher A, Lawes MJ, Woinarski JCZ, Tuft K, Radford IJ, Gordon IJ, Collis MA et al.. 2014. Experimental evidence that feral cats cause local extirpation of small mammals in Australia's tropical savannas. Journal of Applied Ecology. 51:1486-1493.

Naik L, Gebreegziabher Z, Tumwesige V, Balana BB, Mwirigi J, Austin G. 2014. Factors determining the stability and productivity of small scale anaerobic digesters. Biomass and Bioenergy. 70:51-57.

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Rossez Y, Holmes A, Wolfson WB, Gally DL, Mahjan A, Pedersen HL, Willats WGT, Toth IK, Holden N. 2014. Flagella interact with ionic plant lipids to mediate adherence of pathogenic Escherichia coli to fresh produce plants. Environmental Microbiology. 16:2181-2195.

Speed JDM, Austrheim G, Hester AJ, Meisingset E, Mysterud A, Tremblay J, Oien A, Solberg E. 2014. General and specific responses of understory vegetation to cervic herbivory across a range of boreal forests. Oikos.. 123:1270-1280.

Looseley ME, Keith R, Guy D, Barral-Baron G, Thirugnanasambandam A, Harrap D, Werner P, Newton AC. 2014. Genetic mapping of resistance to Rhynchosporium commune and characterisation of early infection in a winter barley mapping population. Euphytica. Published online.

Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok VC, Cock PJA et al.. 2014. The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology. 15

Campbell R, Pont SDA, Morris JA, McKenzie G, Sharma SK, Hedley PE, Ramsay G, Bryan GJ, Taylor MA. 2014. Genome-wide QTL and bulked transcriptomic analysis reveals new candidate genes for the control of tuber carotenoid content in potato (Solanum tuberosum L.). Theoretical and Applied Genetics. 127:1917-1933.

Thorpe P, Mantelin S, Cock PJA, Blok VC, Coke MC, van Den Akker SE, Guzeeva E, Lilley CJ, Smant G, Reid AJ et al.. 2014. Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida. BMC Genomics. 15

Melkonian R, Moulin R, Bena G, Tisseyre P, Chaintreuil C, Heulin K, Rezkallah N, Klonowska A, Gonzalez S, Simon M et al.. 2014. The geographical patterns of symbiont diversity in the invasive legume Mimosa pudica can be explained by the competitiveness of its symbionts and by the host genotype. Environmental Microbiology. 16:2099-2111.

Makarov VV, Love AJ, Sinitsyna OV, Makarova SS, Yaminsky IV, Taliansky ME, Kalinina NO. 2014. "Green" nanotechnologies: synthesis of metal nanoparticles using plants. Acta Naturae. 6:35-44.

Amponsah NY, Troldborg M, Kington B, Aalders I, Hough RL. 2014. Greenhouse gas emissions from renewable energy sources: A review of lifecycle considerations. Renewable and Sustainable Energy Reviews. 39:461-475.

Tomcynska I, Jupe F, Hein I, Marczewski W, Sliwka J. 2014. Hypersensitive response to Potato virus Y in potato cultivar Sarpo Mira is conferred by the Ny-Smira gene located on the long arm of chromosome IX. Molecular Breeding. 34:471-480.

Seward AM, Beale CM, Gilbert L, Jones TH, Thomas RJ. 2014. The impact of increased food availability on reproduction in a long-distance migratory bird: Implications for Environmental Change? PLoS ONE. 9:e11180.

Saunders M, Tobin B, Sweeney C, Gloria M, Benanti G, Cacciotti E, Osborne BA. 2014. Impacts of exceptional and extreme inter-annual climatic events on the net ecosystem carbon dioxide exchange of a Sitka spruce forest. Agricultural and Forest Meteorology. 184:147-157.

Reed MS, Moxey A, Prager K, Hanley N, Skates J, Bonn A, Evans CD, Glenk K, Thomson K. 2014. Improving the link between payments and the provision of ecosystem services in agri-environment schemes. Ecosystem Services. 9:44-53.

Young JC, Waylen KA, Sarkki S, Albon S, Bainbridge I, Balian E, Edwards D, Davidson J, Fairley R, Margerison C et al.. 2014. Improving the science-policy dialogue to meet the challenges of biodiversity conservation: having a conversation rather than talking at one-another. Biodiversity and Conservation. 23:387-404.

Brown EM, Latimer C, Allsopp P, Ternan NG, McMullan G, McDougall GJ, Stewart D, Crozier A, Rowland I, Gill CIR. 2014. In vitro and in vivo models of colorectal cancer: antigenotoxic activity of berries. Journal of Agricultural and Food Chemistry. 62:3852-3866.

Wang J, Thornton B, Yao H. 2014. Incorporation of urea-derived C-13 into microbial communities in four different agriculture soils. Biology and Fertility of Soils. 50:603-612.

Cheng LY, Tang XY, Vance CP, White PJ, Zhang FS, Shen B. 2014. Interactions between light intensity and phosphorus nutrition affect the phosphate-mining capacity of white lupin (Lipinus albus L.). Journal of Experimental Botany. 65:2995-3003.

Goss EM, Tabima JF, Cooke DEL, Restrepo S, Fry WE, Forbes GA, Fieland VJ, Cardenas M, Grunwald NJ. 2014. The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes. Proceedings of the National Academy of Sciences of the USA. 111:8791-8796.

Tomczynska I, Stefanczyk E, Chmielarz M, Karasiewicz B, Kaminski P, Jones JDG, Lees AK, Sliwka J. 2014. A locus conferring effective late blight resistance in potato cultivar Sarpo Mira maps to chromosome XI. Theoretical and Applied Genetics. 127:647-657.

Zhang ZL, Leith C, Rhind SM, Ker C, Osprey M, Kyle C, Coull MC, Thomson C, Green G, Maderova L et al.. 2014. Long term temporal and spatial changes in the distribution of polychlorinated biphenyls and polybrominated diphenyl ethers in Scottish soils. Science of the Total Environment. 468-469:158-164.

Zakharova A, Midwood AJ, Hunt JE, Graham SL, Artz RRE, Turnbull MH, Whitehead D, Millard P. 2014. Loss of labile carbon following soil disturbance determinded by measurement of respired d¹³CO. Soil Biology and Biochemistry. 68:125-132.

Singh BK, Quince C, Macdonald CA, Khachane A, Thomas N, Abu Al-Soud W, Sorensen SJ, He ZL, White D, Sinclair A et al.. 2014. Loss of microbial diversity in soils is coincident with reductions in some specialized functions. Environmental Microbiology. 16:2408-2420.

Speed JDM, Meisingset EL, Austrheim G, Hester AJ, Mysterud A, Tremblay J, Solberg EJ. 2014. Low intensities of red deer browing constrain rowan growth in mature boreal forests of western Norway. Ecoscience. 20:311-318.

Sulpice R, Ishihara H, Schlereth A, Cawthray GR, Encke B, Giavalisco P, Ivakov A, Arrivault S, Jost R, Krohn N et al.. 2014. Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species. Plant Cell and Environment. 37:1276-1298.

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Spezia L, Cooksley SL, Brewer MJ, Donnelly D, Tree A. 2014. Mapping species distributions in one dimension by non homogeneous hidden Markov models: freshwater pearl mussels in the River Dee. Environmental and Ecological Statistics. 21:487-505.

Spezia L, Cooksley SL, Brewer MJ, Donnelly D, Tree A. 2014. Modelling species abundance in a river by Negative Binomial hidden Markov models. Computational Statistics and Data Analysis. 71:599-614.

McIntyre N, Ballard C, Bruen M, Bulygina N, Buytaert W, Cluckie I, Dunn SM, Ehret U, Ewen J, Gelfan A et al.. 2014. Modelling the hydrological impacts of rural land use change. Hydrology Research. 45:737-754.

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van Noordwijk M, Matthews RB, Agus F, Farmer J, Verchot L, Hergoualc'h K, Persch S, Tata HL, Khasanah NM, Widayati A et al.. 2014. Mud, muddle and models in the knowledge value-chain to action on tropical peatland conservation. Mitigation and Adaptation Strategies for Global Change. 19:887-905.

Fenton O, Healy MG, Brennan FP, Jahangir MMR, Lanigan GJ, Richards KG, Thornton SF, Ibrahim TG. 2014. Permeable reactive interceptors - blocking diffuse nutrient and greenhouse gases losses in key areas of the farming landscape. Journal of Agricultural Science. 152:S71-S81.