Publications list
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Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
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2009.
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2009.
The influence of RNA-dependent RNA polymerase 1 on Potato virus Y infection and on other antiviral response genes. Molecular Plant-Microbe Interactions. 22:1312-1318.
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2009.
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2009.
Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
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2009.
Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.
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2009.
Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
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2009.
Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
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2009.
Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
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2009.
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2009.
Rice responses to soil management in rice-based cropping system in the semi-arid tropics of southern Lombok, Eastern Indonesia. Field Crops Research. 110:197-206. Abstract
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2009.
Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
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2009.
Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.
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2009.
Single seed descent as a breeding method for swedes (Brassica napus L. var. napobrassica Peterm). Euphytica. 169:387-401.
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2009.
Strategies for monitoring and managing mass populations of toxic cyanobacteria in recreational waters: A multi-interdisciplinary approach. Environmental Health. 8 Supplement 1:-S11.
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2009.
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2009.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
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2009.
Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
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2009.
Unusual long-distance movement strategies of Potato mop-top virus RNAs in Nicotiana benthamiana. Molecular Plant-Microbe Interactions. 22:381-390.
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2009.
Viruses in soils: morphological diversity and abundance in the rhizosphere. Annals of Applied Biology. 155:51-60. Abstract
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2009.
Adaptation assessments for crop production in response to climate change in Cameroon. Agronomy for Sustainable Development.. 29(2):247-256.
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2009.
Aquatic macrophytes as bioindicators of carbon dioxide in groundwater fed rivers. The Science of the Total Environment. 407(16):4752-4763.
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2009.
Biodiversity gains and losses: evidence for homogenisation of Scottish alpine vegetation. Biological Conservation. 142:1728-1739.
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2009.
Can managers inform models? Integrating local knowledge into models of red deer habitat use Journal of Applied Ecology. 46(2):344-352.
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2009.
Can parasites drive population cycles in mountain hares? Proceedings of the Royal Society of London, B. 276(1662):1611-1617.
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2009.
ClassII peroxidase-encoding genes are present in a phylogenetically wide range of ectomycorrhizal fungi. ISME Journal. 3(12):1387-1395.
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2009.
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2009.
Comments on 'Baseline values and change in the soil, and implications for monitoring' by R.M. Lark, P.H. Bellamy and G.J.D. Kirk. European Journal of Soil Science. 60:481-483.
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2009.
Considerations for Scottish soil monitoring in the European context. European Journal of Soil Science. 60(5):833-843.
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2009.
Crop yield model validation for Cameroon. Theoretical and Applied Climatology. 96(3-4):275-280.
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2009.
Developing an integrated conceptual framework to understand biodiversity conflicts. Land Use Policy. 26(2):242-253.
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2009.
The economic contribution of forest resource use to rural livelihoods in Tigray, Northern Ethiopia. Forest Policy and Economics. 11(2):123-131.
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2009.
Effect of fencing and grazing on Kobresia-dominated meadow in the Qinghai-Tibetan Plateau, China. Plant and Soil. 319(1-2):115-126.
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2009.
The effect of host movement on viral transmission dynamics in a vector-borne disease system. Parasitology. 136(10):1221-1234.
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2009.
Evaluating capture stress and its effects on reproductive success in Svalbard reindeer. Canadian Journal of Zoology. 87(1):73-85.
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2009.
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Global decline in aggregated migrations of large terrestrial mammals. Endangered Species Research. 7:55-76.
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2009.
Hen harriers and red grouse: moving towards consensus? Journal of Applied Ecology. 46(5):961-963.
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2009.
How does landscape structure influence catchment transit time across different geomorphic provinces? Hydrological Processes. 23(6):945-953.
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2009.
The hydrology of the proglacial zone of a high-Arctic glacier (Finsterwalderbreen, Svalbard): Atmospheric and surface water fluxes. Journal of Hydrology. 378(1-2):150-160.
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2009.
Indicators of perceived naturalness as drivers of landscape preference. Journal of Environmental Management. 90(1):375-383.
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Litter type, but not plant cover, regulates initial litter decomposition and fungal community structure in recolonising cutover peatlands. Soil Biology and Biochemistry. 41(3):651-655.
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2009.
New perspectives on managing wildlife diseases. Journal of Applied Ecology.. 46(2):454-456.
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2009.
Physiological, biochemical and molecular responses of soil microbial community after afforestation of pastures with Pinus radiata. Soil Biology and Biochemistry. 41(8):1642-1651.
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2009.
Quantifying terrestrial carbon stocks: examining the spatial variation in two upland areas in the UK and a comparison to mapped estimates of soil carbon. Soil Use and Management. 25(3):320-332.
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2009.
Soil methane oxidation and methanotroph responses to afforestation of pastures with Pinus radiata stands of different ages. Soil Biology and Biochemistry.. 41:2196-2205.
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2009.
Sources of variation contributing to production and quality attributes of Kyrgyz cashmere in Osh and Naryn provinces: Implications for industry development. Small Ruminant Research. 84(1-3):89-99.
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2009.
Topographic impacts on wheat yields under climate change: two contrasted case studies in Europe. Theoretical and Applied Climatology. Published online.
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2009.
Using long-term data sets to understand transit times in contrasting headwater catchments. Journal of Hydrology. 367(3-4):237-248.
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2009.
δ13C and δ15N values in reef corals Porites lutea and P. cylindrica and in their epilithic and endolithic algae. Marine Biology. 155:353-361. Abstract
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2008.
Advances in functional genomics and genetic modification of potato (Review). Potato Research. 51:283-299. Abstract
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2008.
Asynchronous and synchronous updating in individual-based models. Ecological Modelling. 212:522-527. Abstract
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2008.
Atomic force microscopy of potato virus A.. Colloid Journal. 70:199-201. Abstract
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2008.
Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.
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2008.
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2008.
Changes in growth, internode distance and nutrient concentrations of the seagrass Halophila ovalis with exposure to sediment sulphide. Marine Ecology-Progress Series. 361:83-91. Abstract
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2008.
Colonisation outwith the colon: plants as an alternative environmental reservoir for human pathogenic enterobacteria. FEMS Microbiology ReviewsFEMS Microbiology Reviews. 33:689-703.
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2008.
Cylindrical inclusion protein of potato virus A is associated with a subpopulation of particles isolated from infected plants. Journal of General Virology. 89:829-838. Abstract
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2008.
Decomposition in soil and chemical characteristics of pollen. European Journal of Soil Science. 59:551-558. Abstract
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2008.
DsbA plays a critical and multifaceted role in the production of secreted virulence factors by the phytopathogen, Erwinia carotovora subsp. atroseptica. Journal of Biological Chemistry. 283:23739-23753. Abstract
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2008.
Exposure assessment for pesticide intake from multiple food products: a Bayesian latent-variable approach. Risk Analysis. 28:1727-1736. Abstract
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2008.
Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes. Journal of Experimental Botany. 59:4219-4231. Abstract
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2008.
Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome. Molecular Plant-Microbe Interaction. 21:433-447. Abstract
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2008.
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.
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2008.
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2008.
Management to increase the depth of soft soil improves soil conditions and grapevine performance in an irrigated vineyard. Soil and Tillage Research. 98:68-80. Abstract
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2008.
Mapping adaptation of barley to droughted environments. Euphytica. 161:35-45. Abstract
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2008.
Metabolic engineering of carotenoid biosynthesis in plants. Trends in Biotechnology. 26:139-145. Abstract
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2008.
Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.
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2008.
Multiplicative models for combining information from several sensory experiments: A Bayesian analysis. Food Quality and Preference. 19:260-266. Abstract
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2008.
A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
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2008.
The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
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2008.
Old and new faces of the nucleolus. Workshop on the nucleolus and disease. EMBO Reports. 10:35-40. Abstract
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2008.
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A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro. Journal of Molecular Biology. 376:932-937. Abstract
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Soil microbial and faunal responses to herbicide tolerant maize and herbicide in two soils. Plant and Soil. 308:93-103. Abstract
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2008.
Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere. Biology and Fertility of Soils. 44:897-901. Abstract
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2008.
Tissue disruption activates a plant caspase-like protease with TATD cleavage specificity. Plant Stress. 2:89-95. Abstract
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Adaptation assessments for crop production in response to climate change in Cameroon. African Journal of Plant Science and Biotechnology. 2:10-17.
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2008.
Atmospheric CO2 enrichment and nutrient additions to planted soil increase mineralisation of soil organic matter, but do not alter microbial utilisation of plant and soil C-sources. Soil Biology and Biochemistry. 40(9):2434-2440.
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2008.
Catchment data for process conceptualization: simply not enough? Hydrological Processes. 22(12):2057-2061.
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2008.
Climate variability and maize production in Cameroon: simulating the effects of extreme dry and wet years. Singapore Journal of Tropical Geography. 29:357-370.
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2008.
Conceptualising catchment processes: simply too complex? Hydrological Processes. 22(11):1727-1730.
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2008.
Conceptualising in catchment modelling: simply learning? Hydrological Processes. 22(13):2389-2393.
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2008.
Contribution of plant photosynthate to soil respiration and dissolved organic carbon in a naturally recolonising cutover peatland. Soil Biology and Biochemistry. 40(7):1622-1628.
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2008.
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2008.
Distribution of aquatic plants in the Northern Vosges rivers: implications for biomonitoring and conservation. Aquatic Conservation: Freshwater and Marine Ecosystem. 18:619-632.
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2008.
Effects of climate change on Cameroon crop production: Simulation results using GCM scenarios. Climate Research. 36:65-77.
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2008.
Facilitation in plant communities: the past, the present and the future. Journal of Ecology. 96:18-34.
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2008.
Genetic diversity of the subterranean Gansu zokor in a semi-natural landscape. Journal of Zoology. 275(2):153-159.
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2008.
Growth on nitrate and occurrence of nitrate reductase-encoding genes in a phylogenetically diverse range of ectomycorrhizal fungi. New Phytologist. 180(4):875-889.
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2008.
Hen harriers and red grouse: science, politics and human-wildlife conflict. Journal of Applied Ecology. 45(5):1488-1492.
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2008.
Household livelihood strategies and forest dependence in the highlands of Tigray, Northern Ethiopia. Agricultural Systems. 98:147-155.
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2008.
Identifying suitable restoration sites for a scarce sub-arctic willow (Salix arbuscula): a test of methods and information sources. Plant Ecology and Diversity. 1(1):105-114.
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2008.
The impact of defoliation on nitrogen translocation patterns in Buddleia davidii FRANCH. Functional Plant Biology. 35(6):462-469.
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2008.
The impact of raptors on the abundance of upland passerines and waders. Oikos. 117(8):1143-1152.
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2008.
Impeded drainage stimulates extracellular phenol oxidase activity in riparian peat cores. Soil Use and Management. 24(4):357-365.
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2008.
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2008.
Influence of hydrology and seasonality on long-term DOC exports from three contrasting upland catchments. Biogeochemistry. 90(1):93-113.
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2008.
Interactions between fungal community structure, litter decomposition and depth of water-table in a cutover peatland. FEMS Microbiology Ecology. 64(3):433-448.
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2008.
Interpretation of homogeneity in &18O signatures of stream water in a nested sub-catchment system in north east Scotland. Hydrological Processes. 22:4767-4782.
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2008.
Measuring the 13C content of soil respired CO2 using a novel open chamber system. Rapid Communications in Mass Spectrometry. 22:2073-2081.
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2008.
Microbial DNA profiling by multiplex terminal restriction fragment length polymorphism for forensic examination of soil evidence and the influence of sample condition. Journal Applied Microbiology. 105(3):813-821.
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2008.
Parental differences in brood provisioning by Hen Harriers Circus cyaneus. Bird Study. 55(2):209-215.
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2008.
Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25(1):66-77.
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2008.
Progress in model-to-model analysis. Journal of Artificial Societies and Social Simulation. 11(2):8.
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2008.
Summer drought decreases soil fungal diversity and associated phenol oxidase activity in upland Calluna heathland soil. FEMS Microbiology Ecology. 66(2):426-436.
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2008.
Summer drought effects upon soil and litter phenol oxidase activity and soluble carbon release in an upland Calluna heathland. Soil Biology and Biochemistry. 40(6):1519-1532.
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2008.
Temporal patterns of litter production by vascular plants colonising cut-over peatlands. Wetlands. 28(1):245-250.
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2008.
Urban geochemistry: research strategies to assist risk assessment and remediation of brownfield sites in urban areas. Environmental Geochemistry and Health. 30:565-576.
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2008.
Altered expression of SOCS3 in the hypothalamic arcuate nucleus during seasonal body mass changes in the field vole, Microtus agrestis. Journal of Neuroendocrinology. 19:83-94. Abstract
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2007.
Assessing nested hydrological and hydrochemical behaviour of a mesoscale catchment using continuous tracer data. Journal of Hydrology. 336:430-443. Abstract
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2007.
The barley phytomer. Annals of Botany. 100:725-733. Abstract
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2007.
Botrytis cinerea: the cause of grey mould disease. Molecular Plant Pathology. 8:561-580. Abstract
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2007.
Cajal bodies and the nucleolus are required for a plant virus systemic infection. EMBO Journal. 26:2169-2179. Abstract
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2007.
Calibration of quantitative PCR assays. Journal of Agricultural Biological and Environmental Statistics. 12:364-378. Abstract
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2007.
Caspase-resistant VirD2 protein provides enhanced gene delivery and expression in plants. Plant Cell Reports. 26:1215-1219. Abstract
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2007.
Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.. Journal of Experimental Botany. 58:1035-1045. Abstract
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2007.
Colour displays for categorical images. Color Research and Application. 32:304-309. Abstract
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2007.
Concentration-dependent NH3 deposition processes for mixed moorland semi-natural vegetation. Atmospheric Environment. 41:2049-2060. Abstract
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2007.
Coupling the GAL4 UAS system with alcR for versatile cell type-specific chemically inducible gene expression in Arabidopsis. Plant Biotechnology Journal. 5:465-476. Abstract
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2007.
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2007.
Differentiation in two populations of Meloidogyne incognita from Greece in relation to reproduction on resistant tomato and pepper. Journal of Plant Diseases and Protection. 114:276-277. Abstract
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2007.
The effect of 1-methylcyclopropene (1-MCP) on the physical and biochemical characteristics of onion cv. SS1 bulbs during storage. Postharvest Biology and Technology. 44:131-140. Abstract
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2007.
The effect of the transition between controlled atmosphere and regular atmosphere storage on bulbs of onion cultivars SS1, Carlos and Renate. Postharvest Biology and Technology. 44:228-239. Abstract
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2007.
Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract
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2007.
Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
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Evolutionary control of leaf element composition in plants. New Phytologist. 174:516-523. Abstract
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2007.
Exploring thermal imaging variables for the detection of stress responses in grapevine under different irrigation regimes. Journal of Experimental Botany. 58:815-825. Abstract
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2007.
Extreme value analysis of decadal variations in storm surge elevations. Journal of Marine Systems. 67:189-200. Abstract
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Foreword: Gametic cells and molecular breeding for crop improvement. Euphytica. 158:273-274. Abstract
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2007.
Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.
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2007.
Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
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2007.
Molecular barley breeding. Euphytica. 158:295-303. Abstract
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2007.
Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297. Abstract
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2007.
Preharvest application of exogenous abscisic acid (ABA) or an ABA analogue does not affect endogenous ABA concentration of onion bulbs. Plant Growth Regulation. 52:117-129. Abstract
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2007.
Promoting microbial immobilization of soil nitrogen during restoration of abandoned agricultural fields by organic additions. Biology and Fertility of Soils. 43:823-828.
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2007.
A qualitative multi-attribute model for assessing the impact of cropping systems on soil quality. Pedobiologia. 51:239-250. Abstract
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2007.
The resurgence of haploids in higher plants. Trends in Plant Science. 12:368-375. Abstract
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Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science. 12:474-481. Abstract
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2007.
Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
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2007.
Significant difference in pathogencity between MAT1-1 and MAT1-2 isolates in the wheat pathogen Mycosphaerella graminicola.. Fungal Genetics and Biology. 44:339-346. Abstract
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2007.
Singlet oxygen quenching by phenylamides and their parent compounds. Zeischrift f. 62c:833-838.
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2007.
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2007.
Umami compunds are a determinant of the flavor of potato (Solanum tuberosum L.).. Journal of Agricultural and Food Chemistry. 55:9627-9633. Abstract
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2007.
Varietal effects of eight paired lines of transgenic Bt maize and near-isogenic non-Bt maize on soil microbial and nematode community structure. Plant Biotechnology Journal. 5:60-68. Abstract
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2007.
Assessment and implications of intra-specific and phenological variability in monoterpenes of Scots pine (Pinus sylvestris) foliage. Journal of Chemical Ecology. 33(3):477-491.
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2007.
Assessment of the ClimGen stochastic weather generator at Cameroon sites. African Journal of Environmental Science and Technology. 1:86-92.
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2007.
Associations between basal metabolic rate and reproductive performance in C57BL/6J mice. Journal of Experimental Biology. 210(1):65-74.
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2007.
Biochemical and molecular characterisation of methanotrophs in soil from a pristine New Zealand beech forest. FEMS Microbiology Letters. 275(1):89-97.
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2007.
Carbon dynamics in a model grassland with functionally different soil communities. Functional Ecology. 21(4):690-697.
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2007.
Climate change cannot be entirely responsible for soil carbon loss observed in England and Wales, 1978-2003. Global Change Biology. 13(12):2605-2609.
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2007.
Competing conservation goals, biodiversity or ecosystem services : element losses and species recruitment in a managed moorland bracken model system. Journal of Environmental Management. 85(4):1034-1047.
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2007.
Conceptualisation of runoff processes using tracers and GIS analysis in a nested mesoscale catchment. Hydrological Processes. 21(10):1289-1307.
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2007.
Conflicts between biodiversity conservation and human acivities in the CEEC. Ambio. 36(7):545-550.
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2007.
Detritivores as indicators of landscape stress and soil degradation. Australian Journal of Experimental Agriculture. 47(4):412-423.
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2007.
Developing silvopastoral systems and their effects on diversity of fauna. Agroforestry Systems. 70(1):81-89.
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2007.
Do mountain hare populations cycle? Oikos. 116(9):1547-1557.
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2007.
Early childhood wheezing symptoms in relation to plasma selenium in pregnant mothers and neonates. Clinical and Experimental Allergy. 37:1000-1008.
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2007.
Effect of afforestation and reforestation of pastures on the activity and population dynamics of methanotrophic bacteria. Applied and Environmental Microbiology. 73(16):5153-5161.
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2007.
Effects of a plant parasitic nematode (Heterodera trifolii) on clover roots and soil microbial communities. Biology and Fertility of Soils. 43(5):541-548.
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2007.
Effects of exposure of ewes to sewage sludge-treated pasture on phthalate and alkyl phenol concentrations in their milk. The Science of the Total Environment. 383(1-3):70-80.
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2007.
Ethnicity and biodemographic structure in the Arbereshe of the province of Cosenza, Souther Italy in the XIX century. Collegium Antropologicum. 31:331-338.
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2007.
Ethnicity and evolution of the biodemographic structure of Arbereshe and Italian populations of the Pollino Area, Southern Italy (1820-1984). American Anthropologist. 109(4):735-746.
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2007.
Evidence for widespread anoxia in the proglacial zone of an Arctic glacier. Chemical Geology. 243(1-2):1-15.
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2007.
Factors influencing the release of dissolved organic carbon and dissolved forms of nitrogen from a small upland headwater during autumn runoff events. Hydrological Processes. 21(5):622-633.
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2007.
Group size affects foraging and vigilance in migratory Tibetan antelope. Behavioural Processes. 76(3):192-197.
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2007.
Long-term ecosystem dynamics in the Serengeti: lessons for conservation. Conservation Biology. 21(3):580-590.
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2007.
Methane uptake in soils from Pinus radiata plantations, a reverting shrubland and adjacent pastures: effects of land-use change, and soil texture, water and mineral nitrogen. Soil Biology and Biochemistry. 39(7):1437-1449.
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2007.
Modelling species' range shifts in a changing climate: The impacts of biotic interactions, dispersal distance and the rate of climate change. Journal of Theoretical Biology. 245(1):59-65.
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2007.
Physico-chemical and biological controls on dissolved organic matter in peat aggregate soil columns. European Journal of Soil Science. 58:646-657.
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2007.
Predicting the effects of body fatness on food intake and performance of sheep. British Journal of Nutrition. 97(6):1206-1215.
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2007.
A proteomic and targeted metabolomic approach to investigate change in Lolium perenne roots when challenged with glycine. Journal of Experimental Botany. 58(7):1581-1590.
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2007.
REMA: A computer-based mapping tool for analysis of restriction sites in multiple DNA sequences. Journal of Microbiological Methods. 69(2):411-413.
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2007.
Rhizodeposition shapes rhizosphere microbial community structure in organic soil. New Phytologist. 173(3):600-610.
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2007.
Sensitivity to assumptions in models of generalist predation on a cyclic prey. Ecology. 88(10):2576-2586.
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2007.
Spatial synchrony in red grouse population dynamics. Oikos. 116(12):2007-2016.
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2007.
Spatial turnover in the global avifauna. Proceedings of the Royal Society of London, B. 274(1618):1567-1574.
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2007.
Unstable dynamics and population regulation in mountain hares: a review. Biological Reviews. 82(4):527-549.
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2007.
The value of long-term research: conservation science and practice in Tanzania. Conservation Biology. 21(3):576-579.
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2007.
Weak and variable relationships between environmental severity and small-scale co-occurrence in alpine plant communities. Journal of Ecology. 95(6):1284-1295.
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2007.
Ancient origin of elicitin gene clusters in Phytophthora genomes. Molecular Biology and Evolution. 23:338-351. Abstract
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Comparative genomics reveals what makes an enterobacterial plant pathogen. Annual Review of Phytopathology. 44:305-336. Abstract
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