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A
Lewandowska D, Zhang R, Colas I, Uzrek N, Waugh R.  2019.  Application of a sensitive and reproducible label-free proteomic approach to explore the proteome of individual meiotic-phase barley anthers. Frontiers in Plant Science. 10:ArticleNo.393.
Urama KC, Hodge ID.  2006.  Are stated preferences convergent with revealed preferences? Empirical evidence from Nigeria Ecological Economics. 59(1):24-37.
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Biurrun I, Pielech R, Dembicz I, Gillet F, Kozub L, Marcenò C, Reitalu T, van Meerbeek K, Guarino R, Chytrý M et al..  2021.  Benchmarking plant diversity of Palaearctic grasslands and other open habitats. Journal of Vegetation Science. 32:ArticleNo.e13050.
Bennett AE, Preedy K, Golubski A, Umbanhower A, Borrett SR, Byrne L, Apostol K, Bever JD, Biederman L, Classen AT et al..  2019.  Beyond the black box: promoting mathematical collaborations for elucidating interactions in soil ecology. Ecosphere. 10:ArticleNo.e02799.
Hutchins M, Urama K, Penning E, Icke J, Dilks C, Bakken T, Perrin C, Saloranta T, Candela L.  2006.  The BMW model evaluation tool: a guidance document. Archiv fur Hydrologie: Large Rivers Supplement. 17:23-48.
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Waylen KA, Martin-Ortega J, Blackstock KL, Brown I, Uribe BEA, Hernández SB, Bertoni MB, Bustos ML, Bayer AXC, Semerena RIE et al..  2015.  Can scenario-planning support community based natural resource management? Experiences from three countries in Latin America Ecology and Society. 20:ArticleNo.28.
Tetzlaff D, McDonnell JJ, Uhlenbrook S, McGuire KJ, Bogaart P, Naef F, Baird AJ, Dunn SM, Soulsby C.  2008.  Conceptualising catchment processes: simply too complex? Hydrological Processes. 22(11):1727-1730.
Young J, Richards C, Fischer A, Halada L, Kull T, Kuzniar A, Tartes U, Uzunov Y, Watt A.  2007.  Conflicts between biodiversity conservation and human acivities in the CEEC. Ambio. 36(7):545-550.
Ugolini FC, Hillier S, Certini G, Wilson MJ.  2008.  The contribution of aeolian material to an Aridisol from southern Jordan as revealed by the mineralogical analysis. Journal of Arid Environments. 72(8):1431-1447.
Urama KC, Penning WWE, Kamari J.  2006.  Cost-effectiveness analysis and the implementation of the WFD: review of available approaches and the role of model benchmarking. Archiv fur Hydrobiology: Large Rivers Supplement. 17:201-219.
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Morris WL, Hancock RD, Ducreux LJM, Morris JA, Usman M, Verrall SR, Bryan GJ, McNicol JW, Hedley PE, Taylor MA.  2014.  Day length dependent restructuring of the leaf transcriptome and metabolome in potato genotypes with contrasting tuberisation phenotypes. Plant Cell and Environment. 37:1351-1363.
Malolepszy A, Urbanski DF, James EK, Sandal N, Isono E, Stougaard J, Andersen SU.  2015.  The deubiquitinating enzyme AMSH1 is required for rhizobial infection and nodule organogenesis in Lotus japonicus. The Plant Journal. 83:719-731.
Martinussen I, Uleberg E, McDougall GJ, Stewart D, Juntilla O.  2010.  Development and quality of cloudberry (Rubus chamaemorus L) as affected by female parent, male parent and temperature. Journal of Berry Research. 1:91-101.
Uibopuu A, Moora M, Saks U, Daniell TJ, Zobel M, Opik M.  2009.  Differential effect of arbuscular mycorrhizal fungal communities from ecosystems along management gradient on the growth of forest understorey plant species. Soil Biology & Biochemistry. 41:2141-2146.
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Steiner HY, Halpin C, Jez JM, Kough J, Parrott W, Underhill L, Weber N, Hannah LC.  2013.  Editor's choice: Evaluating the potential for adverse interactions within genetically engineered breeding stacks. Plant Physiology. 161:1587-1594.
Mossop KF, Davidson CM, Ure AM, Shand CA, Hillier SJ.  2009.  Effect of EDTA on the fractionation and uptake by Taraxacum officinale of potentially toxic elements in soil from former chemical manufacturing sites. Plant and Soil. 320(1-2):117-129.
Lilley CJ, Maqbool A, Wu D, Yusup HB, Jones LM, Birch PRJ, Banfield MJ, Urwin PE, Eves-van den Akker S.  2018.  Effector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene. PLoS Genetics. 14:ArticleNo.e1007310.
Eriksson AK, Hillier S, Hesterberg D, Klysubun W, Ulen B, Gustafsson PG.  2016.  Evolution of phosphorus speciation with depth in an agricultural soil profile. Geoderma. 280:29-37.
Usher KM, Bergman B, Raven JA.  2007.  Exploring cyanobacterial mutualisms. Annual Review of Ecology Evolution and Systematics. 38:255-273. Abstract
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Eves-van den Akker S, Lilley CJ, Ault JR, Ashcroft AE, Jones JT, Urwin PE.  2014.  The feeding tube of cyst nematodes: characterisation of protein exclusion. PLoS ONE. 9:e87289.
Eves-van den Akker S, Lilley CJ, Yusup HB, Jones JT, Urwin PE.  2016.  Functional C-TERMINALLY ENCODED PEPTIDE (CEP) plant hormone domains evolved de novo in the plant parasite Rotylenchulus reniformis. Molecular Plant Pathology. 17:1265-1275.
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Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EGJ, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC et al..  2008.  Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.
Thorpe P, Mantelin S, Cock PJA, Blok VC, Coke MC, van Den Akker SE, Guzeeva E, Lilley CJ, Smant G, Reid AJ et al..  2014.  Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida. BMC Genomics. 15
Blok VC, Chapman S, Armstrong MR, Phillips M, Lilley C, Urwin P, Blanchard A, Grenier E, Jones JT.  2006.  Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
Dengler J, Wagner V, Dembicz I, García-Mijangos I, Naqinezhad A, Boch S, Chiarucci A, Conradi T, Filibeck G, Guarino R et al..  2018.  GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia. 48:331-347.
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Li X, Yeluripati J, Jones EO, Uchida Y, Hatano R.  2015.  Hierarchical Bayesian calibration of nitrous oxide (N2O) and nitrogen monoxide (NO) flux module of an agro-ecosystem model: ECOSSE. Ecological Modelling. 316:14-27.
Schreiber M, Barakate A, Uzrek N, Macaulay M, Sourdille A, Morris J, Hedley PE, Ramsay L, Waugh R.  2019.  A highly mutagenised barley (cv. Golden Promise) TILLING population coupled with strategies for screening-by-sequencing. Plant Methods. 15:ArticleNo.99..
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van Den Akker SE, Lilley CJ, Jones JT, Urwin PE.  2014.  Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes. PLoS Pathogens. 10:ArticleNo.e1004391.
Oakey H, Shafiei R, Comadran J, Uzrek N, Cullis B, Gomez LD, Whitehead C, McQueen-Mason SJ, Waugh R, Halpin C.  2013.  Identification of crop cultivars with consistently high lignocellulosic sugar release requires the use of appropriate statistical design and modelling. Biotechnology for Biofuels. 6:185.
Pylypenko LA, Uehara T, Phillips MS, Sigareva DD, Blok VC.  2005.  Identification of Globodera rostochiensis and G. pallida in the Ukraine by PCR. European Journal of Plant Pathology. 111:39-46. Abstract
Morris WL, Ducreux LJM, Morris J, Campbell R, Usman M, Hedley PE, Prat S, Taylor MA.  2019.  Identification of TIMING OF CAB EXPRESSION 1 as a temperature-sensitive negative regulator of tuberization in potato. Journal of Experimental Botany. 70:5703-5714.
Soloviy I, Melnykovych M, Gurung AB, Hewitt RJ, Ustych R, Maksymiv L, Brang P, Meessen H, Kaflyk M.  2019.  Innovation in the use of wood energy in the Ukrainian Carpathians: Opportunities and threats for rural communities. Forest Policy and Economics. 104:160-169.
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Upadhyaya HD, Dwivedi SL, Ambrose M, Ellis N, Berger J, Smykal P, Debouck D, Duc G, Dumet D, Flavell A et al..  2011.  Legume genetic resources: management, diversity assessment, and utilization in crop improvement. Euphytica. 180:27-47.
Demars BOL, Kemp JL, Friberg N, Usseglio-Polatera P, Harper DM.  2012.  Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators. 23:301-311.
M
Demars BOL, Kemp JL, Friberg N, Usseglio-Polatera P, Harper DM.  2012.  Macroinvertebrate abundance and proportion of trait categories in river biotopes across England and Wales. PANGEAE database Supplement to: Demars, B.O.L.; Kemp, J.L.; Friberg, N.; Usseglio-Polatera, P.; Harper, D.M. (2012): Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators.. 23:301-311.
Van der Linden I, Cottyn B, Uyttendaele M, Vlaemynck G, Heyndrickx M, Maes M, Holden N.  2016.  Microarray-based screening of differentially expressed genes of e. coli O157:H7 sakai during preharvest survival on butterhead lettuce. Agriculture-Basel. 6
Elia M, Swanston JS, Moralejo MA, Casas AM, P AM, Ciudad FJ, Thomas WTB, Smith PL, Ullrich SE, Molina-Cano J-L.  2010.  A model of the genetic differences in malting quality between European and North American barley cultivars based on a QTL study of the cross Triumph x Morex. Plant Breeding. 129:280-290.
Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al..  2005.  Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
Spash CL, Urama KC, Burton R, Kenyon W, Shannon PH, Hill G.  2009.  Motives behind willingness to pay for improving biodiversity in a water ecosystem: economics, ethics and social psychology. Ecological Economics. 68(4):955-964.
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Hancock RD, Morris WL, Ducreux LJD, Morris JA, Usman M, Verrall SR, Fuller J, Simpson CG, Zhang R, Hedley PE et al..  2014.  Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature. Plant Cell and Environment. 37:439-450.
Malolepszy A, Kelly S, Sorensen KK, James EK, Kalisch C, Bozsoki Z, Panting M, Andersen SU, Sato S, Tao K et al..  2018.  A plant chitinase controls cortical infection thread progression and nitrogen-fixing symbiosis. ELIFE. 7:ArticleNo.e38874.
Eves-van den Akker S, Lilley CJ, Jones JT, Urwin PE.  2009.  Plant-parasitic nematode feeding tubes and plugs: new perspectives on function. Nematology. 17:1-9.
Eves-van den Akker S, Lilley CJ, Jones JT, Urwin PE.  2015.  Plant-parasitic nematode feeding tubes and plugs: new perspectives on function. Nematology. 17:1-9.
Waylen KA, Blackstock KL, van Hulst F, Damian C, Horváth F, Johnson RK, Kanka R, Külvik M, Macleod CJA, Meissner K et al..  2019.  Policy-driven monitoring and evaluation: does it support adaptive management of socio-ecological systems? Science of the Total Environment. 662:373-384.
Urquhart J, Courtney P, Slee W.  2009.  Private ownership and public good provision in English woodlands. Small Scale Forestry, Published online. 9
Urquhart J, Courtney P, Slee W.  2012.  Private woodland owners' perspectives on multifunctionality in English woodlands. Journal of Rural Studies. 28:95-106.
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Mitchell RJ, Urpeth HM, Britton AJ, Black HIJ, Taylor AR.  2016.  Relative importance of local- and large-scale drivers of alpine soil microarthropod communities. Oecologia. 182:913-924.
Unkovich M, Herridge D, James EK, Giller K, Peoples MB.  2020.  Reliable quantification of N-2 fixation by non-legumes remains problematic. Nutrient Cycling in Agroecosystems. Published online..
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Sabbadin F, Urresti S, Henrissat B, Avrova AO, Welsh LRJ, Lindley PJ, Csukai M, Squires JN, Walton PH, Davies GJ et al..  2021.  Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes. Science. 373:774-779.
Urquhart N, Powers S, Wall Z, Fonzone A, Ge J, Polhill JG.  2019.  Simulating the actions of commuters using a multi-agent system. Journal of Artificial Societies and Social Simulation. 22:ArticleNo.10.
Viglia S, Matthews KB, Miller DG, Wardell-Johnson D, Rivington M, Ulgiati S.  2017.  The social metabolism of Scotland: an environmental perspective. Energy Policy. 100:304-313.
Urama KC, Dilks CF, Dunn SM, Ferrier RC.  2006.  Socio-economic and bio-physical modelling of diffuse pollution: closing the gaps. Archiv fur Hydrobiologie. Large Rivers Supplement. 17:175-199.
Mitchell RJ, Urpeth H, Britton AJ, Taylor AR.  2017.  Soil microarthropod-plant community relationships in alpine moss- sedge heath. Applied Soil Ecology. 111:1-8.
Giammaria V, Grandellis C, Bachmann S, Gargantini PR, Feingold SE, Bryan GJ, Ulloa RM.  2011.  StCDPK2 expression and activity reveal a highly responsive potato calcium-dependent protein kinase involved in light signalling. Planta. 233:593-609.
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Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel HM, Glassman SI, Hirooka Y et al..  2018.  Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys. 28:65-82.
Kranse O, Beasley H, Adams S, Pires-daSilva A, Bell C, Lilley CJ, Urwin PE, Bird D, Miska E, Smant G et al..  2021.  Towards genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles. G3 Genes, Genomes, Genetics. 11:ArticleNo.jkaa058.
Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WTB, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A et al..  2008.  Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork. BMC Genetics. 9:-73. Abstract
Orman-Ligeza B, Harwood W, Hedley PE, Hinchcliffe A, Macaulay M, Uauy C, Trafford K.  2020.  TRA1: A locus responsible for controlling agrobacterium-mediated transformability in barley. Frontiers in Plant Science. 11:ArticleNo.355.
Eves-van den Akker S, Lilley CJ, Danchin EGJ, Rancurel C, Cock PJA, Urwin PE, Jones JT.  2014.  The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biology and Evolution. 6:2181-2194.
Canto T, Uhrig JF, Swanson MM, Wright KM, MacFarlane SA.  2006.  Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract
Blöschl G, Bierkens MFP, Chambel A, Cudennec C, Destouni G, Fiori A, Kirchner JW, McDonnell J, Savenije HHG, Sivapalan M et al..  2019.  Twenty three unsolved problems in hydrology (UPH) - a community perspective. Hydrological Sciences Journal.. 64:1141-1158.
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Rivington M, King R, Duckett D, Iannetta PPM, Benton TG, Burgess PJ, Hawes C, Wellesley L, Polhill JG, Aitkenhead M et al..  2021.  UK food and nutrition security during and after the COVID-19 pandemic. Nutrition Bulletin. 46:88-97.
Usher MB, Sier ARJ, Hornung M, Millard P.  2006.  Understanding biological diversity in soil: the UK's Soil Biodiversity Research Programme. Applied Soil Ecology. 33(2):101-113.
Abarenkov K, Nilsson RH, Larsson KH, Alexander IJ, Eberhardt U, Erland S, Hoiland K, Kjoller R, Larsson E, Pennanen T et al..  2010.  The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.
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Houston K, McKim S, Comadran J, Bonar N, Druka I, Uzrek E, Cirillo E, Guzy-Wrobelska J, Collins N, Halpin C et al..  2013.  Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence. Proceedings of the National Academy of Sciences of the USA. 110:16675-16680.
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Gunnarsdottir MJ, Gardarsson SM, Figueras MJ, Puigdomènech C, Juárez R, Saucedo G, Arnedo MJ, Santos R, Monteiro S, Avery LM et al..  2020.  Water safety plan enhancements with improved drinking water quality detection techniques. Science of the Total Environment. 698:ArticleNo.134185.
Upton B, Odling N, Kirstein LA, Underhill JR, Hillier S, Puziewicz J, Ntaflos T, Baginski B, Perrillat JP.  2019.  The Weaklaw Vent, SE Scotland: Metasomatism of eruptive products by carbo-hydro-fluids of probable mantle origin. Mineralogical Magazine. 83:855-867.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.