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Found 1564 results

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2005
Masoudi-Nejad A, Nasuda S, Bihoreau M-T, Waugh R, Endo TR.  2005.  An alternative to radiation hybrid mapping for large-scale genome analysis in barley. Molecular Genetics and Genomics. 274:589-594. Abstract
Koscianska E, Kalantidis K, Wypijewski K, Sadowski J, Tabler M.  2005.  Analysis of RNA silencing in agroinfiltrated leaves of Nicotiana benthamiana and Nicotiana tabacum. Plant Molecular Biology. 59:647-661. Abstract
Armstrong MR, Whisson SC, Pritchard L, Bos JIB, Venter E, Avrova AO, Rehmany AP, B U, Brooks K, Cherevach I et al..  2005.  An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognised in the host cytoplasm. Proceedings of the National Academy of Sciences, USA. 102:7766-7771. Abstract
Fenton B, Malloch G, Woodford JAT, Foster SP, Anstead J, Denholm I, King L, Pickup J.  2005.  The attack of the clones: tracking the movement of insecticide-resistant peach-potato aphids Myzus persicae (Hemiptera: Aphididae). Bulletin of Entomological Research. 95:483-494. Abstract
Kumar PL, Latha TKS, Kulkarni NK, Raghavendra N, Saxena KB, Waliyar F, Rangaswamy KT, Muniyappa V, Doriswamy S, Jones AT.  2005.  Broad-based resistance to pigeonpea sterility mosaic disease in wild relatives of pigeonpea (Cajanus: Phaseoleae). Annals of Applied Biology. 146:371-379. Abstract
Liu H, Hedley PE, Cardle L, Wright KM, Hein I, Marshall DF, Waugh R.  2005.  Characterisation and functional analysis of two barley caleosins expressed during barley caryopsis development. Planta. 221:513-522. Abstract
Woodhead M, Russell JR, Squirrell J, Hollingsworth PM, MacKenzie K, Gibby M, Powell W.  2005.  Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Molecular Ecology. 14:1681-1695. Abstract
Ibrahim AFM, Hedley PE, Cardle L, Kruger W, Marshall DF, Muehlbauer G, Waugh R.  2005.  A comparative analysis of transcript abundance using SAGE and Affymetrix arrays. Functional & Integrative Genomics. 5:163-174. Abstract
Webster EA, Halpin C, Chudek JA, Tilston EL, Hopkins DW.  2005.  Decomposition in soil of soluble, insoluble and lignin-rich fractions of plant material from tobacco with genetic modifications to lignin biosynthesis. Soil Biology & Biochemistry. 37:751-760. Abstract
Husmeier D, Wright F, Milne I.  2005.  Detecting interspecific recombination with a pruned probabilistic divergence measure. Bioinformatics. 21:1797-1806. Abstract
Silvar C, Duncan JM, Cooke DEL, Williams NA, Diaz J, Merino F.  2005.  Development of specific PCR primers for identification and detection of Phytophthora capsici Leon. European Journal of Plant Pathology. 112:43-52.
Rehmany AP, Gordon A, Rose LE, Allen RL, Armstrong MR, Whisson SC, Kamoun S, Tyler BM, Birch PRJ, Beynon JL.  2005.  Differential recognition of highly divergent downy mildew avirulence gene alleles by RPP1 resistance genes from two Arabidopsis lines. Plant Cell. 17:1839-1850. Abstract
Isidore E, Scherrer B, Bellec A, Budin K, Faivre-Rampant O, Waugh R, Keller B, Caboche M, Feuillet C, Chalhoub B.  2005.  Direct targeting and rapid isolation of BAC clones spanning a defined chromosome region. Functional & Integrative Genomics. 5:97-103. Abstract
Wang J, Zhang X, Bengough AG, Crawford JW.  2005.  Domain-decomposition method for parallel lattice Boltzmann simulation of incompressible flow in porous media. Physical Review E. 72:016706-1-016706-11. Abstract
van de Graaf P, Lees AK, Wale SJ, Duncan AJ.  2005.  Effect of soil inoculum level and environmental factors on potato powdery scab caused by Spongospora subterranea. Plant Pathology. 54:22-28. Abstract
Bohan DA, Boffey CWH, Brooks DR, Clark SJ, Dewar AM, Firbank LG, Haughton AJ, Hawes C, Heard MS, May MJ et al..  2005.  Effects on weed and invertebrate abundance and diversity of herbicide management in genetically modified herbicide-tolerant winter-sown oilseed rape. Proceedings of the Royal Society of London, Series B. 272:463-474. Abstract
Grenville-Briggs LJ, Avrova AO, Bruce CR, Williams A, Whisson SC, Birch PRJ, van West P.  2005.  Elevated amino acid biosynthesis in Phytophthora infestans during appressorium formation and potato infection. Fungal Genetics and Biology. 42:244-256. Abstract
Kanyuka K, Druka A, Caldwell DG, Tymon A, McCallum N, Waugh R, Adams MJ.  2005.  Evidence that the recessive bymovirus resistance locus rym4 in barley corresponds to the eukaryotic translation initiation factor 4E gene. Molecular Plant Pathology. 6:449-458. Abstract
Stadler R, Wright KM, Lauterbach C, Amon G, Gahrtz M, Feuerstein A, Oparka KJ, Sauer N.  2005.  Expression of GFP-fusions in Arabidopsis companion cells reveals non-specific protein trafficking into sieve elements and identifies a novel post-phloem domain in roots. Plant Journal. 41:319-331. Abstract
Whisson SC, Avrova AO, Lavrova O, Pritchard L.  2005.  Families of short interspersed elements in the genome of the oomycete plant pathogen, Phytophthora infestans. Fungal Genetics and Biology. 42:351-365. Abstract
Krivtsov V, Liddell K, Bezginova T, Salmond R, Staines HJ, Watling R, Garside A, Thompson JA, Griffiths BS, Brendler A.  2005.  Forest litter bacteria: relationships with fungi, microfauna, and litter composition over a winter-spring period. Polish Journal of Ecology. 53:383-394. Abstract
Pritchard L, Corne D, Kell D, Rowland J, Winson M.  2005.  A general model of error-prone PCR. Journal of Theoretical Biology. 234:497-509. Abstract
Cooke DEL, Jung T, Williams NA, Schubert R, Osswald W, Duncan JM.  2005.  Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina. Forest Pathology. 35:57-70. Abstract
Rostoks N, Mudie S, Cardle L, Russell JR, Ramsay L, Booth A, Svensson JT, Wanamaker SI, Walia H, Rodriguez EM et al..  2005.  Genome wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics. 274:515-527springerlink.com/content/7625g78880706u6m/fulltext.pdf. Abstract
Walters D, Walsh D, Newton AC, Lyon GD.  2005.  Induced resistance for plant disease control: maximizing the efficacy of resistance elicitors. Phytopathology. 95:1368-1373. Abstract
Brooks DR, Clark SJ, Perry JN, Bohan DA, Champion GT, Firbank LG, Haughton AJ, Hawes C, Heard MS, Woiwod IP.  2005.  Invertebrate biodiversity in maize following withdrawal of triazine herbicides. Proceedings of the Royal Society of London, Series B. 272:1497-1502. Abstract
Randall TA, Dwyer RA, Huitema E, Beyer K, Cvitanich C, Kelkar H, Ah Fong AMV, Gates K, Roberts S, Yatzkan E et al..  2005.  Large-scale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi. Molecular Plant-Microbe Interactions. 18:229-243. Abstract
Bisognin DA, Douches DS, Buszka L, Bryan GJ, Wang D.  2005.  Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract
Whisson SC, Avrova AO, van West P, Jones JT.  2005.  A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans. Molecular Plant Pathology. 6:153-163. Abstract
Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al..  2005.  Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
Pemberton CL, Whitehead NA, Sebaihia M, Bell KS, Hyman LJ, Harris SJ, Matlin AJ, Robson ND, Birch PRJ, Carr JP et al..  2005.  Novel quorum sensing-controlled genes in Erwinia carotovora subsp. carotovora: identification of a fungal elicitor homologue in a soft-rotting bacterium. Molecular Plant-Microbe Interactions. 18:343-353. Abstract
Liu Z, Bos JIB, Armstrong MR, Whisson SC, da Cunha L, Torto-Alalibo T, Win J, Avrova AO, Wright F, Birch PRJ et al..  2005.  Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Molecular Biology and Evolution. 22:659-672. Abstract
Hinsinger P, Gobran GR, Gregory PJ, Wenzel WW.  2005.  Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract
Stafne ET, Clark JR, Weber CA, Graham J, Lewers KS.  2005.  Simple sequence repeat (SSR) markers for genetic mapping of raspberry and blackberry. Journal of the American Society of Horticultural Science. 130:722-728. Abstract
Spooner DM, McLean K, Ramsay G, Waugh R, Bryan GJ.  2005.  A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping. Proceedings of the National Academy of Sciences, USA. 102:14694-14699. Abstract
Rostoks N, Borevitz JO, Hedley PE, Russell JR, Mudie S, Morris J, Cardle L, Marshall DF, Waugh R.  2005.  Single feature polymorphism discovery in the barley transcriptome. Genome Biology. 6:-R54. Abstract
Syed NH, Sureshsundar S, Wilkinson MJ, Bhau BS, Cavalcanti JJV, Flavell AJ.  2005.  Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.
Lees AK, Wale SJ, van de Graaf P, Brierley JL.  2005.  The use of molecular diagnostics to investigate the epidemiology of potato diseases. Australasian Plant Pathology. 34:449-455. Abstract
Cullen DW, Toth IK, Pitkin Y, Booham K, Walsh I, Barker I, Lees AK.  2005.  Use of quantitative molecular diagnostic assays to investigate Fusarium dry rot in potato stocks and soil. Phytopathology. 95:1462-1471. Abstract
Hein I, Barciszewska-Pacak M, Hrubikova K, Williamson S, Dinesen M, Soenderby IE, Sundar S, Jarmolowski A, Shirasu K, Lacomme C.  2005.  Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley. Plant Physiology. 138:2155-2164. Abstract
2006
Matthews KB, Wright IA, Buchan K, Davies DA, Schwarz G.  2006.  Assessing the options for upland livestock systems under CAP reform: developing and applying a livestock systems model within whole-farm systems analysis. Agricultural Systems. 90(1-3):32-61.
Singh BK, Walker A, Wright DJ.  2006.  Bioremedial potential of fenamiphos and chlorpyrifos degrading isolates: influence of different environmental conditions. Soil Biology and Biochemistry. 38(9):2682-2693.
Keith AM, van der Wal R, Brooker RW, Osler GHR, Chapman SJ, Burslem DFRP.  2006.  Birch invasion of heather moorland increases nematode diversity and trophic complexity. Soil Biology and Biochemistry. 38(12):3421-3430.
Hillier S, Wilson MJ, Merriman RJ.  2006.  Clay mineralogy of the Old Red Sandstone and Devonian sedimentary rocks of Wales, Scotland, and England. Clay Minerals. 41(1):433-471.
Midwood AJ, Gebbing T, Wendler R, Sommerkorn M, Hunt J, Millard P.  2006.  Collection and storage of CO2 for 13C analysis: an application to separate soil CO2 efflux into root and soil derived components. Rapid Communications in Mass Spectrometry. 20(22):3379-3384.
Ayres E, van der Wal R, Sommerkorn M, Bardgett R.  2006.  Direct uptake of soil nitrogen by mosses. Biology Letters. 2(2):286-288.
Gardner DS, Van Bon BWN, Dandrea J, Goddard PJ, May SF, Wilson V, Stephenson T, Symonds ME.  2006.  Effect of periconceptual undernutrition and gender on hypothalamic-pituitary-adrenal axis function in young adult sheep. Journal of Endocrinology. 190(2):203-212.
Wright IA, Jones JR, Davies DA, Davidson GR, Vale JE.  2006.  The effect of sward surface height on the response to mixed grazing by cattle and sheep. Animal Science. 82:271-276.
Pakeman RJ, Beaton JK, Thoss V, Lennon JJ, Campbell CD, White D, Iason GR.  2006.  The extended phenotype of Scots pine (Pinus sylvestris) structures the understorey assemblage. Ecography. 29(3):451-457.
Heywood E, Wright J, Wienburg CL, Black HIJ, Long SM, Osborn D, Spurgeon DJ.  2006.  Factors influencing the national distribution of polycyclic aromatic hydrocarbons and polychlorinated iphenyls in British soils. Environmental Science and Technology. 40(24):7629-7635.
Littlewood NA, Pakeman RJ, Woodin SJ.  2006.  A field assessment of the success of moorland restoration in the rehabilitation of whole plant assemblages. Applied Vegetation Science. 9(2):295-306.
Kent M, Moyeed RA, Reid CL, Pakeman RJ, Weaver R.  2006.  Geostatistics, spatial rate of change analysis and boundary detection in plant ecology and biogeography. Progress in Physical Geography. 30(2):201-231.
Lin H, Bouma J, Pachepsky Y, Western A, Thompson J, van Genuchten TM, Vogel HJ, Lilly A.  2006.  Hydropedology: synergistic integration of pedology and hydrology. Water Resources Research. 42(5):W05301.
Horswell J, Weitz HJ, Percival HJ, Speir TW.  2006.  Impact of heavy metal amended sewage sludge on forest soils as assessed by bacterial and fungal biosensors. Biology and Fertility of Soils. 42(6):569-576.
Moir HJ, Gibbins CN, Soulsby C, Webb JH.  2006.  Interactions between stream discharge and hydraulic conditions in contrasting channel morphologies and their influence on site utilisation by spawning Atlantic salmon (Salmo salar). Canadian Journal of Fisheries and Aquatic Sciences. 63(11):2567-2585.
Weatherall A, Proe MF, Craig J, Cameron AD, Midwood AJ.  2006.  Internal cycling of nitrogen, potassium and magnesium in young Sitka spruce. Tree Physiology. 26:673-680.
Gilbert L, Williamson KA, Hazon N, Graves JA.  2006.  Maternal effects due to male attractiveness affect offspring development in the zebra finch. Proceedings of the Royal Society of London, B. 273(1595):1765-1771.
Singh BK, Walker A.  2006.  Microbial degradation of organophosphorus compounds. FEMS Microbiology Review. 30(3):428-471.
Wright RF, Aherne J, Bishop K, Camarero L, Cosby BJ, Erlandsson M, Evans CD, Forsius M, Hardekopf H, Helliwell RC et al..  2006.  Modelling the effect of climate change on recovery of acidified freshwaters: relative sensitivity of individual processes in the MAGIC model. The Science of the Total Environment. 365(1-3):154-166.
Littlewood NA, Dennis P, Pakeman RJ, Woodin SJ.  2006.  Moorland restoration aids the reassembly of associated phytophagous insects. Biological Conservation. 132(3):395-404.
Milner-Gulland EJ, Kerven C, Behnke R, Wright IA, Smailov A.  2006.  A multi-agent system model of pastoralist behaviour in Kazakhstan. Ecological Complexity. 3(1):23-36.
Goddard PJ, Waterhouse A, Dwyer CM, Stott A.  2006.  The perception of the welfare of sheep in extensive systems. Small Ruminant Research. 62(3):215-225.
Littlewood NA, Pakeman RJ, Woodin SJ.  2006.  The response of plant and insect assemblages to the loss of Calluna vulgaris from upland vegetation. Biological Conservation. 128(3):335-345.
Soulsby C, Tetzlaff D, Rodgers P, Dunn S, Waldron S.  2006.  Runoff processes, stream water residence times and controlling landscape characteristics in a mesoscale catchment: an initial evaluation. Journal of Hydrology. 325(1-4):197-221.
Soulsby C, Tetzlaff D, Dunn SM, Waldron S.  2006.  Scaling up and out in runoff process understanding - insights from nested experimental catchment studies. Hydrological Processes - HP Today. 20:2461-2465.
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser J, Wheateley R, McNicol J, Millard P.  2006.  Sheep urine deposition is a source of heterogeneity in upland grassland soil microbial community structure. FEMS Microbiology Ecology. 56(2):310-320.
Barton ME, Hillier S, Watson GVR.  2006.  The slip surface in the D zone of the barton clay. Quarterly Journal of Engineering Geology and Hydrogeology. 39(4):357-370.
Walker DM, Perez-Barberia FJ, Marion G.  2006.  Stochastic modelling of ecological processes using hybrid Gibbs samplers. Ecological Modelling. 198(1-2):40-52.
Weatherall A, Craig J, Cameron AD, McKay HM, Proe MF, Midwood AJ.  2006.  Tracing N, K, Mg and Ca released from decomposing biomass to new tree growth. Part II: A model system simulating root decomposition on clearfell sites. Biomass and Bioenergy. 30(12):1060-1066.
Duncan AJ, Rahman A, Miller DW, Frutos P, Gordon IJ, Rehman A, Baig A, Ali F, Wright IA.  2006.  Transhumance livestock production in the Northern Areas of Pakistan: nutritional inputs and productive outputs. Agriculture, Ecosystems and Environment. 117(2-3):195-204.
Millard P, Wendler R, Grassi G, Grelet GA, Tagliavini M.  2006.  Translocation of N in the xylem of cherry and poplar during remobilization: scaling up to field-grown trees. Tree Physiology. 26:527-536.
Wilson MJ.  2006.  Weathering of the primary rock-forming minerals: processes, products and rates. Clay Minerals. 39(3):233-266.
Barthram GT, Elston DA, Griffiths JH, Bolton GR, Wright GG.  2006.  Within year variation in the vegetative spread of five temperate grasses. Journal of Vegetation Science. 17(3):315-322.
Jiang RHY, Tyler BM, Whisson SC, Hardham AR, Govers F.  2006.  Ancient origin of elicitin gene clusters in Phytophthora genomes. Molecular Biology and Evolution. 23:338-351. Abstract
Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A et al..  2006.  An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics. 6:202-211. Abstract
Rostoks N, Schmierer D, Mudie S, Drader T, Brueggeman R, Caldwell DG, Waugh R, Kleinhofs A.  2006.  Barley necrotic locus nec1 encodes the cyclic nucleotide-gated ion channel 4 homologous to the Arabidopsis HLM1. Molecular Genetics and Genomics. 275:159-168. Abstract
Bos JIB, Kanneganti T-D, Young C, Cakir C, Huitema E, Win J, Armstrong MR, Birch PRJ, Kamoun S.  2006.  The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant Journal. 48:165-176. Abstract
Gregory AS, Whalley WR, Watts CW, Bird NRA, Hallett PD, Whitmore AP.  2006.  Calculation of the compression index and precompression stress from soil compression test data. Soil and Tillage Research. 89:45-57. Abstract
Nuopponen M, Wikberg HI, Birch GM, J A-S, Maunu SL, Vuorinen T, Stewart D.  2006.  Characterization of 25 tropical hardwoods with Fourier transform infrared,ultraviolet resonance Raman and 13C cross-polarisation magic-angle spinning NMR spectroscopy. Journal of Applied Polymer Science. 102:810-819. Abstract
Meharg AA, Scrimgeour CM, Hossain SA, Fuller K, Cruickshank K, Williams PN, Kinniburgh DG.  2006.  Codeposition of organic carbon and arsenic in Bengal Delta aquifers. Environmental Science & Technology. 40:4928-4935. Abstract
van Os H, Andrzejewski S, Bakker E, Barrena I, Bryan GJ, Caromel B, Ghareeb B, Isidore E, De Jong W, van Koert P et al..  2006.  Construction of a 10,000 marker ultradense genetic recombination map of potato: providing a framework for accelerated gene isolation and genomewide physical map. Genetics. 173:1075-1087. Abstract
Winfield M, D'Amato GF, De Dominicis RI, Salimbeni P, Tucci GF.  2006.  A cytological and molecular study of the genera Scorzonera L. and Podospermum (L.) DC (Asteraceae). Caryologia. 59:153-163. Abstract
Syed NH, Sorensen AP, Antonise R, van de Wiel C, van der Linden CG, van't Westende W, Hooftman DAP, den Nijs HCM, Flavell AJ.  2006.  A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers. Theoretical and Applied Genetics. 112:517-527. Abstract
Krivtsov V, Bezginova T, Salmond R, Liddell K, Garside A, Thompson J, Palfreyman JW, Staines HJ, Brendler A, Griffiths BS et al..  2006.  Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland. Forestry. 79:201-216. Abstract
Krivtsov V, Garside A, Bezginova T, Thompson J, Palfreyman JW, Salmond R, Liddell K, Brendler A, Griffiths BS, Watling R et al..  2006.  Ecological study of the forest litter meiofauna of a unique Scottish woodland. Animal Biology. 56:69-93. Abstract
Pritchard L, White JA, Birch PRJ, Toth IK.  2006.  GenomeDiagram: A python package for the visualisation of large-scale genomic data. Bioinformatics. 22:616-617. Abstract
Waugh R, Leader DJ, McCallum N, Caldwell D.  2006.  Harvesting the potential of induced biological diversity. Trends in Plant Science. 11:71-79. Abstract
Walker PG, Gordon SL, Brennan RM, Hancock RD.  2006.  High-throughput monolithic HPLC method for rapid vitamin C phenotyping of berry fruit. Phytochemical Analysis. 17:284-290. Abstract
Hermans C, Hammond JP, White PJ, Verbruggen N.  2006.  How do plants respond to nutrient shortage by biomass allocation? Trends in Plant Science. 11:610-617. Abstract
Feeney D, Hallett PD, Rodger S, Bengough AG, White NA, Young IM.  2006.  Impact of fungal and bacterial biocides on microbial induced water repellency in arable soil. Geoderma. 135:72-80. Abstract
Hopkins DW, Webster EA, Tilston EL, Halpin C.  2006.  Influence of available substrates on the decomposition in soil of plant materials with genetic modifications to lignin biosynthesis. European Journal of Soil Science. 57:495-503. Abstract
Kilminster KL, Walker DI, Thompson PA, Raven JA.  2006.  Limited nutritional benefit to the seagrass Halophila ovalis, in culture, following sediment organic matter enrichment. Estuarine Coastal and Shelf Science. 68:675-685. Abstract
Williamson VM, Kumar A.  2006.  Nematode resistance in plants: the battle underground. Trends in Genetics. 22:396-403. Abstract
Lees AK, Wattier R, Shaw DS, Sullivan L, Williams NA, Cooke DEL.  2006.  Novel microsatellite markers for the analysis of Phytophthora infestans populations. Plant Pathology. 55:311-319. Abstract
McCue KF, Allen PV, Shepherd LVT, Blake A, Whitworth JL, Maccree MM, Rockhold DR, Stewart D, Davies HV, Belknap WR.  2006.  The primary in vivo steroidal alkaloid glucosyltransferase from potato. Phytochemistry. 67:1590-1597. Abstract
MacMillan K, Blok VC, Young I, Crawford J, Wilson MJ.  2006.  Quantification of the slug parasitic nematode Phasamarhabditis hermaphrodita from soil samples using real time qPCR. International Journal for Parasitology. 36:1453-1461. Abstract
Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat PR, Roose ML, Svensson JT, Stein N, Varshney RK, Marshall DF et al..  2006.  Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, USA. 103:18656-18661. Abstract
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser JI, Wheatley RE, McNicol JW, Millard P.  2006.  Sheep-urine-induced changes in soil microbial community structure. FEMS Microbiology Ecology. 56:310-320. Abstract
Wall DH, Adams BJ, Barrett JE, Hopkins DW, Virginia RA.  2006.  A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica. Soil Biology & Biochemistry. 38:3001-3002. Abstract
Canto T, Uhrig JF, Swanson MM, Wright KM, MacFarlane SA.  2006.  Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract
2007
Wright AJ, Soto NA, Baldwin AL, Bateson M, Beale CM, Clark C, Deak T, Edwards EF, Fernandez A, Godinho A et al..  2007.  Anthropogenic noise as a stressor in animals: a multidisciplinary perspective. International Journal of Comparative Psychology. 20:250-273.
Gundelwein A, Muller-Lupp T, Sommerkorn M, Haupt ETK, Pfeiffer EM, Wiechmann H.  2007.  Carbon in tundra soils in the Lake Labaz region of arctic Siberia. European Journal of Soil Science. 58(5):1164-1174.
Kay D, Edwards AC, Ferrier RC, Francis C, Kay C, Rushby L, Watkins J, McDonald AT, Wyer M, Crowther J et al..  2007.  Catchment microbial dynamics: the emergence of a research agenda. Progress in Physical Geography. 31(1):59-76.
Belzunce-Segarra MJ, Szefer P, Wilson MJ, Bacon J, Bolalek J.  2007.  Chemical forms and distribution of heavy metals in core sediments from the Gdansk Basin, Baltic Sea. Polish Journal of Environmental Studies. 16:505-515.
Sullivan PF, Sommerkorn M, Rueth HM, Nadelhoffer KJ, Shaver GR, Welker JM.  2007.  Climate and species affect fine root production with long-term fertilization in acidic tussock tundra near Toolik Lake, Alaska. Oecologia. 153(3):643-652.
Brooker RW, Young JC, Watt AD.  2007.  Climate change and biodiversity: impacts and policy development challenges - a European case study. International Journal of Biodiversity Science and Management. 3:12-30.
Smith P, Chapman SJ, Scott WA, Black HIJ, Wattenbach M, Milne R, Campbell CD, Lilly A, Ostle N, Levey P et al..  2007.  Climate change cannot be entirely responsible for soil carbon loss observed in England and Wales, 1978-2003. Global Change Biology. 13(12):2605-2609.
Robinson DT, Brown DG, Parker DC, Schreinemachers P, Janssen MA, Huigen M, Wittmer H, Gotts NM, Promburom P, Irwin E et al..  2007.  Comparison of empirical methods for building agent-based models in land use science. Journal of Land Use Science. 2(1):31-55.
Tetzlaff D, Soulsby C, Waldron S, Malcolm BDIAPJS, Lilly A, Youngson AF.  2007.  Conceptualisation of runoff processes using tracers and GIS analysis in a nested mesoscale catchment. Hydrological Processes. 21(10):1289-1307.
Young J, Richards C, Fischer A, Halada L, Kull T, Kuzniar A, Tartes U, Uzunov Y, Watt A.  2007.  Conflicts between biodiversity conservation and human acivities in the CEEC. Ambio. 36(7):545-550.
Marshall KB, White R, Fischer A.  2007.  Conflicts between humans over wildlife management: on the diversity of stakeholder attitudes and implications for conflict management. Biodiversity and Conservation. 16(11):3129-3146.
Jude SR, Jones AP, Watkinson AR, Brown I, Gill JA.  2007.  The development of a visualization methodology for integrated coastal management. Coastal Management. 35(5):525-544.
Wright AJ, Soto NA, Baldwin AL, Bateson M, Beale CM, Clark C, Deak T, Edwards EF, Fernandez A, Godinho A et al..  2007.  Do marine mammals experience stress related to anthropogenic noise? International Journal of Comparative Psychology. 20:250-273.
Newey SJ, Willebrand T, Haydon D, Dahl F, Aebischer N, Smith A, Thirgood SJ.  2007.  Do mountain hare populations cycle? Oikos. 116(9):1547-1557.
Fraser MD, Davies DA, Wright IA, Vale JE, Nute GR, Hallett KG, Richardson RI.  2007.  Effect on upland beef production of incorporating winter feeding of red clover silage or summer grazing of Molinia-dominated semi-natural pastures. Grass and Forage Science. 62(3):284-300.
Fraser MD, Davies DA, Vale JE, Hirst WM, Wright IA.  2007.  Effects on animal performance and sward composition of mixed and sequential grazing of permanent pasture by cattle and sheep. Livestock Production Science. 110(3):251-266.
Wadham JL, Cooper RJ, Tranter M, Bottrell S.  2007.  Evidence for widespread anoxia in the proglacial zone of an Arctic glacier. Chemical Geology. 243(1-2):1-15.
Fischer A, van der Wal R.  2007.  Invasive plant suppresses charismatic seabird - the construction of attitudes towards biodiversity management options. Biological Conservation. 135(2):256-267.
Freppaz M, Edwards AC, Williams BL, Scalenghe R, Zanini E.  2007.  Labile nitrogen, carbon, and phosphorus pools and nitrogen mineralization and immobilization rates at low temperatures in seasonally snow-covered soils. Biology and Fertility of Soils. 43(5):519-529.
Broos K, Macdonald LM, Warne MSJ, Heemsbergen DA, Barnes MB, Bell M, McLaughlin MJ.  2007.  Limitations of field soil microbial biomass measures. Soil Biology and Biochemistry. 39(10):2693-2695.
Hyatt M, Gopalakrishnan GS, Bispham J, Gentili S, McMillen IC, Rhind SM, Rae MT, Kyle CE, Brooks AN, Jones C et al..  2007.  Maternal nutrient restriction in early pregnancy programmes hepatic mRNA expression of growth related genes and liver size in adult male sheep. Journal of Endocrinology. 192(1):87-97.
Perez-Barberia FJ, Walker DM, Marion G.  2007.  Maximising intake under challenging foraging conditions at two hierarchical spatial scales in males and females of Soay sheep. Animal Behaviour. 73(2):339-348.
Futter MN, Butterfield D, Cosby BJ, Dillon PJ, Wade AJ, Whitehead PJ.  2007.  Modelling the mechanisms that control in-stream dissolved organic carbon dynamics in upland and forested catchments. Water Resources Research, W02424.. 43(2):W02424.
McDonnell JJ, Sivapalan M, Vache K, Dunn S, Grant G, Haggerty R, Hinz C, Hooper R, Kirchner J, Roderick M et al..  2007.  Moving beyond heterogeneity and process complexity: A new vision for watershed hydrology. Water Resources Research. 43(7):W07301.
Hooker JE, Piatti P, Cheshire MV, Watson CA.  2007.  Polysaccharides and monosaccharides in the hyphosphere of the arbuscular mycorrhizal fungi Glomus E3 and Glomus tenue. Soil Biology and Biochemistry. 39(2):680-683.
Walker KJ, Warman EA, Bhogal A, Cross RB, Pywell RF, Meek WR, Chambers BJ, Pakeman RJ.  2007.  Recreation of lowland heathland on ex-arable land: assessing the limiting processes on two sites with contrasting soil fertility and pH. Journal of Applied Ecology. 44(3):573-582.
Kay D, Aitken M, Crowther J, Dickson I, Edwards AC, Francis C, Hopkins M, Jeffrey W, Kay C, McDonald MDATD et al..  2007.  Reducing fluxes of faecal indicator compliance parameters to bathing waters from diffuse agricultural sources: The Brighouse Bay study, Scotland. Environmental Pollution. 147(1):138-149.
Freppaz M, Williams BL, Edwards AC, Scalenghe R, Zanini E.  2007.  Simulating soil freeze/thaw cycles typical of early and late winter alpine conditions: implications for N and P availability. Applied Soil Ecology. 35(1):247-255.
Howard BJ, Beresford NA, Gashchak S, Arkhipov A, Mayes RW, Caborn J, Stromann G, Wacker L.  2007.  The transfer of 239/240Pu to cow milk. Journal of Environmental Radioactivity. 98(1-2):191-204.
Williams DL, Goddard PJ, Brancker WM.  2007.  Ultrasonographic examination of ocular lesions in farmed halibut. Veterinary Journal. 173(2):456-458.
Newey SJ, Dahl F, Willebrand T, Thirgood SJ.  2007.  Unstable dynamics and population regulation in mountain hares: a review. Biological Reviews. 82(4):527-549.
Novis PM, Whitehead D, Gregorich EG, Hunt JE, Sparrow AD, Hopkins DW, Elberling B, Greenfield LG.  2007.  Annual carbon fixation in terrestrial populations of Nostoc commune (Cyanobacteria) from an Antarctic dry valley is driven by temperature regime. Global Change Biology. 13:1224-1237. Abstract
Bevan M, Waugh R.  2007.  Applying plant genomics to crop improvement. Genome Biology. 8:302-302. Abstract
Tetzlaff D, Waldron S, Brewer MJ, Soulsby C.  2007.  Assessing nested hydrological and hydrochemical behaviour of a mesoscale catchment using continuous tracer data. Journal of Hydrology. 336:430-443. Abstract
Kuan HL, Hallett PD, Griffiths BS, Gregory AS, Watts CW, Whitmore AP.  2007.  The biological and physical stability and resilience of a selection of Scottish soils to stresses. European Journal of Soil Science. 58:811-821. Abstract
Williamson B, Tudzynski B, Tudzynski P, Van Kan JAL.  2007.  Botrytis cinerea: the cause of grey mould disease. Molecular Plant Pathology. 8:561-580. Abstract
Woodhall JW, Lees AK, Edwards SG, Jenkinson P.  2007.  Characterisation of Rhizoctonia solani from potato in Great Britain. Plant Pathology. 56:286-295. Abstract
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2007.  Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 152:1767-1774.
Mazzitelli L, Hancock RD, Haupt S, Walker PG, Pont SDA, McNicol JW, Cardle L, Morris J, Viola R, Brennan RM et al..  2007.  Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.. Journal of Experimental Botany. 58:1035-1045. Abstract
Khondoker MR, Glasbey CA, Worton BJ.  2007.  A comparison of parametric and non-parametric methods for normalising cDNA microarray data. Biometrical Journal. 49:815-823. Abstract
Vanbergen AJ, Jones TH, Halls RS, Watt AD, Elston DA.  2007.  Consequences for a host-parasitoid interaction of host-plant aggregation, isolation and phenology. Ecological Entomology. 32:419-427. Abstract
Valentine TA, Randall E, Wypijewski K, Chapman S, Jones JT, Oparka KJ.  2007.  Delivery of macromolecules to plant parasitic nematodes using a tobacco rattle virus vector. Plant Biotechnology Journal. 5:827-834. Abstract
Woodhead M, Russell JR, Squirrell J, Hollingsworth PM, Cardle L, Gibby M, Powell W.  2007.  Development of EST-derived microsatellite markers for Arabidopsis lyrata subspecies petraea (L.). Molecular Ecology Notes. 7:631-634. Abstract
Chope GA, Terry LA, White PJ.  2007.  The effect of 1-methylcyclopropene (1-MCP) on the physical and biochemical characteristics of onion cv. SS1 bulbs during storage. Postharvest Biology and Technology. 44:131-140. Abstract
Ravirala RS, Barabote RD, Wheeler DM, Reverchon S, Tatum O, Malouf J, Liu H, Pritchard L, Hedley PE, Birch PRJ et al..  2007.  Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract
Dziva F, Mahajan A, Cameron P, Currie C, McKendrick IJ, Wallis TS, Smith DGE, Stevens MP.  2007.  EspP, a type V-secreted serine protease of enterohaemorrhagic Escherichia coli O157:H7, influences intestinal colonization of calves and adherence to bovine primary intestinal epithelial cells. FEMS Microbiology Letters. 271:258-264. Abstract
Watanabe T, Broadley MR, Jansen S, White PJ, Takada J, Satake K, Takamatsu T, Tuah SJ, Osaki M.  2007.  Evolutionary control of leaf element composition in plants. New Phytologist. 174:516-523. Abstract
White PJ, Bowen HC, Marshall B, Broadley MR.  2007.  Extraordinarily high leaf selenium to sulfur ratios define "Se-accumulator" plants. Annals of Botany. 100:111-118. Abstract
Forster BP, Tuvesson S, Weyen J.  2007.  Foreword: Gametic cells and molecular breeding for crop improvement. Euphytica. 158:273-274. Abstract
Hopkins DW, Webster EA, Boerjan W, Pilate G, Halpin C.  2007.  Genetically modified lignin belowground. Nature Biotechnology. 25:168-169. Abstract
Ramsey JS, Wilson ACC, de Vos M, Sun Q, Tamborindeguy C, Winfield A, Malloch G, Smith DM, Fenton B, Gray SM et al..  2007.  Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design. BMC Genomics. 8:-423. Abstract
Varshney RK, Marcel TC, Ramsay L, Russell JR, R MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A.  2007.  A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics. 114:1091-1103. Abstract
Sims M, Elston DA, Harris MP, Wanless S.  2007.  Incorporating variance uncertainty into a power analysis of monitoring designs. Journal of Agricultural Biological and Environmental Statistics. 12:236-249. Abstract
Hancock RD, Walker PG, Pont SDA, Marquis N, Vivera S, Gordon SL, Brennan RM, Viola R.  2007.  L-Ascorbic acid accumulation in fruit of Ribes nigrum occurs by in situ biosynthesis via the L-galactose pathway. Functional Plant Biology. 34:1080-1091. Abstract
Feuillet C, Langridge P, Waugh R.  2007.  Meeting Report: The Aaronsohn-ITMI International Conference. Israel Journal of Plant Sciences. 55:315-319.
Rae SJ, Macaulay M, Ramsay L, Leigh F, Matthews D, O'Sullivan DM, Donini P, Morris PC, Powell W, Marshall DF et al..  2007.  Molecular barley breeding. Euphytica. 158:295-303. Abstract
Wilson MR, Foucaud L, Barlwo PG, Hutchison GR, Sales J, Simpson RJ, Stone V.  2007.  Nanoparticle interactions with zinc and iron: Implications for toxicology and inflammation. Toxicology and Applied Pharmacology. 225:80-89. Abstract
Johnson SN, Crawford JW, Gregory PJ, Grinev DV, Mankin RW, Masters GJ, Murray PJ, Wall DH, Zhang X.  2007.  Non-invasive techniques for investigating and modelling root-feeding insects in managed and natural systems. Agricultural and Forest Entomology. 9:39-46.
Avrova AO, Whisson SC, Pritchard L, Venter E, de Luca S, Hein I, Birch PRJ.  2007.  A novel, non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans. Microbiology. 153:747-759. Abstract
Graham NS, Broadley MR, Hammond JP, White PJ, May ST.  2007.  Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics. 8:-344. Abstract
Judge J, Davidson RS, Marion G, White PCL, Hutchings MR.  2007.  Persistence of Mycobacterium avium subspecies paratuberculosis in rabbits: the interplay between horizontal and vertical transmission. Journal of Applied Ecology. 44:302-311. Abstract
Gregory AS, Watts CW, Whalley WR, Kuan HL, Griffiths BS, Hallett PD, Whitmore AP.  2007.  Physical resilience of soil to field compaction and the interactions with plant growth and microbial community structure. European Journal of Soil Science. 58:1221-1232. Abstract
Scott D, Welch D, van der Wal R, Elston DA.  2007.  Response of the moss Racomitrium lanuginosum to changes in sheep grazing and snow-lie due to a snow-fence. Applied Vegetation Science. 10:229-238. Abstract
Hermans C, Hammond JP, Verbruggen N, White PJ.  2007.  Response to Andrews et al.: Correlations and causality. Trends in Plant Science. 12:532-533. Abstract
Poulsen M, Schroder M, Wilcks A, Kroghsbo S, Lindecrona RH, Miller A, Frenzel T, Danier J, Rychlik M, Shu QY et al..  2007.  Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
Mitchell A, Oommen M, Bhatia P, Scott P, Robertson ZC, Stewart D, McDougall GJ, Wallace HM.  2007.  Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract
Leitch ECM, Walker AW, Duncan SH, Holtrop G, Flint HJ.  2007.  Selective colonization of insoluble substrates by human faecal bacteria. Environmental Microbiology. 9:667-679. Abstract
Luo ZW, Potokina E, Druka A, Wise R, Waugh R, Kearsey MJ.  2007.  SFP genotyping from Affymetrix arrays is robust but largely detects cis-acting expression regulators. Genetics. 176:789-800. Abstract
Wood JC, McKendrick IJ, Gettingby G.  2007.  A simulation model to assess herd-level intervention strategies against E. coli O157. Epidemiology and Infection. 135:749-764. Abstract
Moora M, Daniell TJ, Kalle H, Liira J, P K, Roosaluste E, Opik M, Wheatley RE, Zobel M.  2007.  Spatial pattern and species richness of boreonemoral forest understorey and its determinants - A comparison of differently managed forests. Forest Ecology & Management. 250:64-70. Abstract
Broadley MR, White PJ, Hammond JP, Zelko I, Lux A.  2007.  Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ.  2007.  Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Traffic. 8:21-31. Abstract
Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ.  2007.  Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Addendum. Plant Signaling & Behaviour. 2:180-181. Abstract
van den Berg N, Berger DK, Hein I, Birch PRJ, Wingfield MJ, Viljoen A.  2007.  Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology. 8:333-341. Abstract
Whisson SC, Boevink P, Moleleki LN, Avrova AO, Morales JG, Gilroy EM, Armstrong MR, Grouffaud S, van West P, Chapman S et al..  2007.  A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature. 450:115-118. Abstract
2008
Knox JW, Weatherhead K, Loris AAR.  2008.  Assessing water requirements for irrigated agriculture in Scotland. Water International. 32(1):133-144.
Winward GP, Avery LM, Stephenson T, Jefferson B.  2008.  Chlorine disinfection of greywater for reuse: effect of organics and particles. Water Research. 42(1-2):483-491.
Orr HG, Wilby RL, McKenzie-Hedger M, Brown I.  2008.  Climate change in the uplands: a UK perspective on safeguarding regulatory ecosystem services. Climate Research. 37(1):77-98.
Swain DL, Friend MA, Mayes RW, Wilson LA, Hutchings MR.  2008.  Combining an active transponder system with sprayed n-alkanes to quantify investigative and ingestive grazing behaviour of dairy cattle in pastures treated with slurry. Applied Animal Behaviour Science. 109(2-4):211-222.
Dunn SM, Freer J, Weiler M, Kirkby MJ, Seibert J, Quinn PF, Lischeid G, Tetzlaff D, Soulsby C.  2008.  Conceptualising in catchment modelling: simply learning? Hydrological Processes. 22(13):2389-2393.
Avery LM, Frazer-Williams RAD, Winward G, Jeffrey P, Shirley-Smith C, Liu S, Memon FA, Jefferson B.  2008.  Constructed wetlands for grey water treatment. Ecohydrology and Hydrobiology. 7(3-4):191-200.
Frazer-Williams RAD, Avery LM, Winward G, Jeffrey P, Shirley-Smith C, Liu S, Jefferson B.  2008.  Constructed wetlands for urban grey water recycling. International Journal of Environmental Pollution. 33(1):93-109.
Ugolini FC, Hillier S, Certini G, Wilson MJ.  2008.  The contribution of aeolian material to an Aridisol from southern Jordan as revealed by the mineralogical analysis. Journal of Arid Environments. 72(8):1431-1447.
Shand CA, Williams BL, Coutts G.  2008.  Determination of N-species in soil extracts using microplate techniques. Talanta. 74:648-654.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.