Publications list
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High turnover rate of free phospholipids in soil confirms the classic hypothesis of PLFA methodology. Soil Biology and Biochemistry. 135:323-330.
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2019.
Hierarchical Bayesian model approach for estimating soil CO2 flux: a case study in central Hokkaido, Japan. Soil Science and Plant Nutrition. 61:116-132.
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2015.
Hierarchical Bayesian calibration of nitrous oxide (N2O) and nitrogen monoxide (NO) flux module of an agro-ecosystem model: ECOSSE. Ecological Modelling. 316:14-27.
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2015.
Having it all - historical energy intakes do not generate the anticipated trade-offs in fecundity. Proceedings of the Royal Society of London, B. 273(1592):1369-1374.
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2006.
A habitat suitability model for the narrow-headed ant formica exsecta evaluated against independent data. Insect Conservation and Diversity. 1(2):108-113.
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2008.
Greenhouse gas emissions from the Tibetan alpine grassland: Effects of nitrogen and phosphorus addition. Sustainability. 10:ArticleNo.4454.
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2018.
"Green" nanotechnologies: synthesis of metal nanoparticles using plants. Acta Naturae. 6:35-44.
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2014.
Global Research Alliance N2O chamber methodology guidelines: Summary of modeling approaches. Journal of Environmental Quality. 49:1168-1185.
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2020.
Global Research Alliance Modelling Platform (GRAMP): An open web platform for modelling greenhouse gas emissions from agro-ecosystems. Computers and Electronics in Agriculture. 111:112-120.
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2015.
Global patterns of potential future plant diversity hidden in soil seed banks. Nature Communications. 12:ArticleNo.023(2021).
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2021.
Global magnesium supply in the food chain. Crop and Pasture Science. 66:1278-1289.
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2015.
A global collection of permanent vegetation plots. Journal of Vegetation Science. Journal of Vegetation Science. 33
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2022.
Global change effects on plant communities are magnified by time and the number of global change factors imposed. Proceedings of the National Academy of Sciences of the United States of America (PNAS). :ArticleNo.201819027.
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2019.
Global change effects on plant communities are magnified by time and the number of global change factors imposed. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 116:17867-17873.
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2019.
Global challenges facing plant pathology: multidisciplinary approaches to meet the food security and environmental challenges in the mid-21st century. CABI Agriculture and Bioscience. 2:ArticleNo.20.
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2021.
Geophagy among East African chimpanzees: consumed soils provide protection from plant secondary compounds and bioavailable iron. Environmental Geochemistry and Health. 41:2911-2927.
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2019.
Geographic variation in tissue accumulation of endocrine disrupting compounds (EDCs) in grazing sheep. Environmental Pollution. 159:416-422.
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2011.
Geochemical and mineralogical features of the substrates of the Vasyugan Mire, Western Siberia, Russia. Catena. 194:ArticleNo.104781.
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2020.
Genotyping of Phytophthora infestans in Eastern Africa reveals a dominating invasive European lineage. Phytopathology. 109:670-680.
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2019.
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathogens. 7:e1002219.
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2011.
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2010.
Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193:2076-2077.
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2011.
Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
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2011.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
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2009.
A genetically modified tobacco mosaic virus that can produce gold nanoparticles from a metal salt precursor. Frontiers in Plant Science. 6
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2015.
Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. Veterinary Microbiology. 151:284-290.
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2011.
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2012.
Genetic diversity in caribou linked to past and future climate change. Nature Climate Change. 4:132-137.
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2013.
Generation of nonvernal-obligate, faster-cycling Noccaea caerulescens lines through fast neutron mutagenesis. New Phytologist. 189:409-414.
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2011.
A general random walk model for the leptokurtic distribution of organism movement: theory and application. Ecological Modelling. 200:79-88. Abstract
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2007.
The future of the northeast Atlantic benthic flora in a high CO2 world. Ecology and Evolution. 4:2787-2798.
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2014.
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2009.
Functional microbial diversity in European remediating cutover peatlands is directed by labile carbon. Journal of Applied Ecology. 45(6):1799-1809.
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2008.
Functional C-TERMINALLY ENCODED PEPTIDE (CEP) plant hormone domains evolved de novo in the plant parasite Rotylenchulus reniformis. Molecular Plant Pathology. 17:1265-1275.
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2016.
Forty years of reform and opening up: China's progress toward a sustainable path. Science Advances. 5:ArticleNo.eaau9413.
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2019.
Food security in a water-scarce world: making virtual water compatible with crop water use and food trade. Scientific Papers Series: Management, Economic Engineering in Agriculture and Rural Development. 13:431-443.
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2013.
First 20 years of DNDC: model evolution. Ecological Modelling. 292:51-62.
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2014.
Fighting talk - organisational discourses of the conflict over raptors and grouse moor management in Scotland. Land Use Policy. 77:332-343.
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2018.
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2022.
Female size shows similar trends in all clades of the phylum Nematoda. Nematology. 8:111-127. Abstract
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2006.
Fates of antibiotic resistance genes in the gut microbiome from different soil fauna under long-term fertilization. Environmental Science and Technology. 55:423-432.
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2021.
Fate of tetracycline and sulfonamide resistance genes in a grassland soil amended with different organic fertilizers. Ecotoxicology and Environmental Safety. 170:39-46.
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2019.
Factors determining soil nutrient distribution in a small-scaled watershed in the purple soil region of Sichuan Province, China. Soil and Tillage Research. 105(2):300-306.
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2009.
Experimental and bioinformatic evidence that raspberry leaf blotch emaravirus P4 is a movement protein of the 30K superfamily. Journal of General Virology. 94:2117-2128.
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2013.
Expectations and experiences of diverse forms of knowledge use: the case of the UK National Ecosystem Assessment. Environment and Planning C. 32:229-246.
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2014.
Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley. The Plant Journal. 99:1172-1191.
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2019.
Evolutionary temperature compensation of carbon fixation in marine phytoplankton. Ecology Letters. 23:722-733.
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2020.
Evolution of the seed dispersal system in barley. Cell. 162:527-539.
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2015.
Evaluation of spot and passive sampling for monitoring, flux estimation and risk assessment of pesticides within the constraints of a typical regulatory monitoring scheme. Science of the Total Environment. 569-570:1369-1379.
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2016.
Evaluating the precision of eight spatial sampling schemes in estimating regional means of simulated yield for two crops. Environmental Modelling and Software. 80:100-112.
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2016.
Evaluating the performance of horizontal sub-surface flow constructed wetlands: a case study from southern India. Ecological Engineering Journal. 162:ArticleNo.106170.
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2021.
Evaluating the impacts of climate variability and disturbance regimes on the historic carbon budget of a forest landscape. Agricultural and Forest Meteorology. 180:265-280.
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2013.
Evaluating governance processes in the sharing of revenues from wildlife tourism and hunting in Ethiopia. Environmental Conservation. 40:253-265.
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2013.
Europe-wide dampening of population cycles in keystone herbivores. Science. 340:63-66.
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2013.
Estimating greenhouse gases emissions from horticultural peat soils using a DNDC modelling approach. Journal of Environmental Management. 233:681-694.
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2019.
Estimating changes in Scottish soil carbon stocks using ECOSSE. II. Application. Climate Research. 45:179-192.
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2010.
Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties. Climate Research. 45:179-192.
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2010.
Estimating agro-ecosystem carbon balance of northern Japan, and comparing the change in carbon stock by soil inventory and net biome productivity. Science of the Total Environment. 554:293-302.
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2016.
Essay - The role of ecological theory in microbial ecology. Nature Reviews Microbiology. 5(5):384-392.
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2007.
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2009.
Epigenetic remodeling of meiotic crossover frequency in arabidopsis thaliana DNA methyltransferase mutants. PLoS Genetics. 8:e1002844.
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2012.
Environmental risk assessment of blight-resistant potato: use of a crop model to quantify nitrogen cycling at scales of the field and cropping system. Environmental Science and Pollution Research. 24:21434-21444.
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2017.
Environmental change impacts on the C- and N-cycle of European forests: a model comparison study. Biogeosciences. 10:1751-1773.
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2013.
Ensuring water resource security in China; the need for advances in evidence-based policy to support sustainable management. Environmental Science and Policy. 75:65-69.
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2017.
Ensuring water resource security in China; the need for advances in evidence-based policy to support sustainable management. Environmental Science and Policy. 75:65-69.
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2017.
Engineered resistance in potato against potato leafroll virus, potato virus A and potato virus Y. Virus Genes. 47:86-92.
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2013.
Endemic Mimosa species from Mexico prefer alphaproteobacterial rhizobial symbionts. New Phytologist. 209:319-333.
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2016.
Egg hatching and survival time of soil-dwelling insect larvae: a partial differential equation model and experimental validation. Ecological Modelling. 202:493-502. Abstract
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2007.
Efficient degradation of diclofenac sodium by periodate activation using Fe/Cu bimetallic modified sewage sludge biochar/UV system. Science of the Total Environment. 783:ArticleNo.146794.
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2021.
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2012.
Effects of supplemental irrigation with micro-sprinkling hoses on water distribution in soil and grain yield of winter wheat. Field Crops Research. 161:26-37.
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2014.
The effects of soil horizons and faunal excrement on bacterial distribution in an upland grassland soil. FEMS Microbiology Ecology. 52:139-144. Abstract
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2005.
Effects of season and sediment-water exchange processes on the partitioning of pesticides in the catchment environment: Implications for pesticides monitoring. Science of the Total Environment. 698:ArticleNo.134228.
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2020.
Effects of rooting media on root growth and morphology of Brassica rapa seedlings. South African Journal of Plant and Soil. Published online.
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2016.
Effects of rooting media on root growth and morphology of Brassica rapa seedlings. South African Journal of Plant and Soil. 33:219-227.
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2016.
Effects of riparian buffer strips on ground beetles (Coleoptera, Carabidae) within an agricultural landscape. Insect Conservation and Diversity. 7:172-184.
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2014.
Effects of CO2 on the searching behaviour of the root-feeding clover weevil Sitona lepidus (Coleoptera: Curculionidae). Bulletin of Entomological Research. 96:361-366. Abstract
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2006.
Effects of biofertilizer on soil microbial diversity and antibiotic resistance genes. Science of the Total Environment.
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2022.
Effector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene. PLoS Genetics. 14:ArticleNo.e1007310.
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2018.
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2015.
The effect of supplemental irrigation after jointing on leaf senescence and grain filling in wheat. Field Crops Research. 151:35-44.
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2013.
The effect of storage on microbial activity and community structure of drained and flooded paddy soils. Journal of Soils and Sediments. 15:880-889.
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2015.
Effect of roasting conditions and grinding on free radical contents of coffee beans stored in air. Food Chemistry. 131:811-816.
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2012.
Effect of rice straw application on microbial community and activity in paddy soil under different water status. Environmental Science and Pollution Research. 23:5941-5948.
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2016.
Effect of rice straw application on microbial community and activity in paddy soil under different water status. Environmental Science and Pollution Research. 23:5941-5948.
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2016.
Effect of composting on the conjugative transmission of sulfonamide resistence and sulfonamide-resistant baterial population. Journal of Cleaner Production. 285:ArticleNo.125483.
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2021.
The economics of alternative crop production systems in the context of farmer participation in carbon trading markets. Agroecology and Sustainable Food Systems. 43:67-91.
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2019.
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2009.
Dynamics of microbial biomass and community composition after short-term water status change in Chinese paddy soils. Environmental Science and Pollution Research. 25:2932-2941.
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2018.
Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrobial Agents and Chemotherapy. 50:2732-2740.
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2006.
Don't forget to look down - collaborative approaches to predator conservation. Biological Reviews. Published online..
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2017.
Domain organization of the N-terminal portion of hordeivirus movement protein TGBp1. Journal of General Virology. 90:3022-3032.
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2009.
Does reduced usage of antibiotics in livestock production mitigate the spread of antibiotic resistance in soil, earthworm guts, and the phyllosphere? Environment International. 136:ArticleNo.105359.
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2020.
Does microbial habitat or community structure drive the functional stability of microbes to stresses following re-vegetation of a severely degraded soil? Soil Biology and Biochemistry. 42:850-859.
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2010.
Does incorporation of cowpea-maize residue mixes influence nitrous oxide emission and mineral nitrogen release in a tropical luvisol? Nutrient Cycling in Agroecosystems. 91:281-292.
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2011.
Does climate change explain the decline of a trans-Saharan Afro-Palaearctic migrant? Oecologia. 159(3):649-659.
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2009.
Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environmental Microbiology. 12:304-314.
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2010.
Distributions of carbon and nitrogen isotopes in Scotland's topsoil: a national-scale study. European Journal of Soil Science. 66:1002-1011.
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2015.
Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract
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2009.
Discarded masks as hotspots of antibiotic resistance genes during COVID19 pandemic. Journal of Hazardous Materials.
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2022.
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2006.
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2009.
Differences and commonalities in physical, chemical and mineralogical properties of Zanzibari geophagic soils. Journal of Chemical Ecology.. 36(1):129-140.
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2010.
Dietary requirements for magnesium but not calcium are likely to be met in Malawi based on national food supply data. International Journal for Vitamin and Nutrition Research. 82:192-199.
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2012.
Dietary mineral supplies in Africa. Physiologia Plantarum. 151:208-229.
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2014.
Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape. Journal of the Science of Food and Agriculture. 88:2253-2264. Abstract
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2008.
Deterministic processes vary during community assembly for ecologically dissimilar taxa. Nature Communications. 6
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2015.
Determination of soil hydraulic conductivity with the lattice Boltzmann method and soil thin-section technique. Journal of Hydrology. 306:59-70.
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2005.
Denial of long-term issues with agriculture on tropical peatlands will have devastating consequences. Global Change Biology. 23:977-982.
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2017.
Denial of long-term issues with agriculture on tropical peatlands will have devastating consequences. Global Change Biology. 23:977-982.
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2017.
Defining the rhizobium leguminosarum species complex. Genes. 12:ArticleNo.111.
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2021.
Defining targets for reversing declines of soil carbon in high-intensity arable cropping. Agronomy. 10:ArticleNo.973.
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2020.
Decentralized treatment and recycling of greywater from a school in rural India. Journal of Water Process Engineering. 30:ArticleNo.101695.
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2020.
Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract
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2009.
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2019.
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data. 4:ArticleNo.170044.
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2017.
Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth. Theoretical and Applied Genetics. 127:2159-2171.
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2014.
Consistent temperature dependence of respiration across ecosystems contrasting in thermal history. Global Change Biology. 18:1300-1311.
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2012.
A conjoint analysis of landholder preferences for reward-based land-management contracts in Kapingazi watershed, Eastern Mount Kenya. Journal of Environmental Management. 92:2634-2646.
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2011.
Congruent responses to weather variability in high arctic herbivores. Biology Letters. 8:1002-1005.
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2012.
Conflicts between biodiversity conservation and human acivities in the CEEC. Ambio. 36(7):545-550.
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2007.
Conceptualisation of runoff processes using tracers and GIS analysis in a nested mesoscale catchment. Hydrological Processes. 21(10):1289-1307.
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2007.
A compositional shift in the soil microbiome induced by tetracycline, sulfamonomethoxine and ciprofloxacin entering a plant-soil system. Environmental Pollution. 212:440-448.
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2016.
Complete genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. Standards in Genomic Sciences. 9
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2014.
A comparative nitrogen balance and productivity analysis of legume and non-legume supported cropping systems: the potential role of biological nitrogen fixation. Frontiers in Plant Science. 7:ArticleNo.1700..
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2016.
Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus. PLoS Biology. 15:e2002266.
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2017.
Comparative genome and transcriptome analysis unravels key factors of nitrogen use efficiency in Brassica napus L. Plant Cell and Environment. 43:712-731.
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2020.
Community driven coastal management: an example of the implementation of a coastal defence bund on South Uist, Scottish Outer Hebrides. Ocean and Coastal Management. 94:30-37.
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2014.
A commentary on occupational infectious diseases due to agricultural practices in Sub-Saharan Africa. Biomass and Bioenergy. 70:99-111.
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2014.
Collection and evaluation of genetic diversity and population structure of potato landraces and varieties in China. Frontiers in Plant Science. 10:ArticleNo.139.
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2019.
Cohort variation in individual body mass dissipates with age in large herbivores. Ecological Monographs. 86:517-543.
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2016.
Cohort variation in individual body mass dissipates with age in large herbivores. Ecological Monographs. 86:517-543.
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2016.
CO2 fluxes from drained and rewetted peatlands using a new ECOSSE model water table simulation approach. Science of Total Environment. 754:ArticleNo.142433.
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2021.
Climate change and biodiversity: impacts and policy development challenges - a European case study. International Journal of Biodiversity Science and Management. 3:12-30.
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2007.
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2015.
A chromosome conformation capture ordered sequence of the barley genome. Nature. 544:427-433.
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2017.
A cholesterol-based allostery model of T cell receptor phosphorylation. Immunity. 44:1091-1101.
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2016.
A chloroplast retrograde signal regulates nuclear alternative splicing. Science. 344:427-430.
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2014.
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2005.
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2007.
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2018.
Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348:431-441. Abstract
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2008.
Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348(3-4):431-441.
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2008.
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2012.
Can managers inform models? Integrating local knowledge into models of red deer habitat use Journal of Applied Ecology. 46(2):344-352.
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2009.
Cajal bodies and their role in plant stress and disease responses. RNA Biology. 14:779-790.
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2016.
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2006.
C-13 PLFAs: a key to open the soil microbial black box? Plant and Soil. 392:3-15.
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2015.
Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
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2012.
Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environmental Microbiology. 11(4):762-778.
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2009.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
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2010.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19(1):44-52.
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2010.
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2014.
Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia. International Journal of Systematic and Evolutionary Microbiology. 58(9):2174-2179.
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2008.
Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. International Journal of Systematic and Applied Microbiology. 63:435-441.
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2013.
Bulk mineralogical characterisation of oilfield reservoir rocks and sandstones using diffuse reflectance infrared fourier transform spectroscopy and partial least squares analysis. Journal of Petroleum Science and Engineering. 60(1):1-17.
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2008.
BTB-BACK domain protein POB1 suppresses immune cell death by targeting ubiquitin E3 ligase PUB17 for degradation. PLoS Genetics. 13:e1006540.
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2017.
Breeding histories and selection criteria for oilseed rape in Europe and China identified by genome wide pedigree dissection. Scientific Reports. 7:ArticleNo.1916.
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2017.
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2014.
Biological nitrification inhibition by sorghum root exudates impacts ammonia-oxidizing bacteria but not ammonia-oxidizing archaea. Biology and Fertility of Soils. 57:399-407.
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2021.
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. Journal of Biomedical Semantics. 5
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2014.
Bioconda: A sustainable and comprehensive software distribution for the life sciences. Nature Methods. 15:475-476.
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2018.
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2013.
Benchmarking plant diversity of Palaearctic grasslands and other open habitats. Journal of Vegetation Science. 32:ArticleNo.e13050.
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2021.
BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
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2018.
Azoarcus olearius sp.nov., a nitrogen-fixing bacterium isolated from oil-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. 63:3755-3761.
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2013.
Atomic force microscopy of potato virus A.. Colloid Journal. 70:199-201. Abstract
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2008.
Associations between basal metabolic rate and reproductive performance in C57BL/6J mice. Journal of Experimental Biology. 210(1):65-74.
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2007.
Arable plant communities as indicators of farming practice. Agriculture, Ecosystems and Environment. 138:17-26.
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2010.
APETALA2 functions as a temporal factor together with BLADE-ON-PETIOLE2 and MADS29 to control flower and grain development in barley. Development. 148:ArticleNo.dev194894.
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2021.
Analysis of time series data on agroecosystem vegetation using predictive clustering trees. Ecological Modelling. 222:2524-2529.
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2011.
Analysis of ESTs generated from inner bark tissue of an Acacia auriculiformis x Acacia mangium hybrid. Tree Genetics and Genomes. 7:143-152.
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2011.
Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation. Plant Cell Reports. 34:495-505.
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2015.
The algal revolution. Trends in Plant Science. 22:726-738.
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2017.
Agronomic biofortification of cowpea with selenium: effects of selenate and selenite application on selenium and phytate concentrations in seeds. Journal of the Science of Food and Agriculture. 99:5969-5983.
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2019.
Agricultural activities affect the pattern of the resistome within the phyllosphere microbiome in peri-urban environments. Journal of Hazardous Materials. 382:ArticleNo.121068.
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2020.
Adsorptive removal of imidacloprid by potassium hydroxide activated magnetic sugarcane bagasse biochar: adsorption efficiency, mechanism and regeneration. Journal of Cleaner Production. 292:ArticleNo.126005.
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2021.
ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
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2011.
Adopting soil organic carbon management practices in soils of varying quality: implications and perspectives in Europe. Soil and Tillage Research. 165:95-106.
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2017.
Adding ‘iterativity’ to the credibility, relevance, legitimacy: A novel scheme to highlight dynamic aspects of science-policy interfaces. Environmental Science and Policy. 54:505-512.
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2015.
Acidophilic denitrifiers dominate the N2O production in a 100-year-old tea orchard soil. Environmental Science and Pollution Research. 22:4173-4182.
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2015.
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. Journal of Biomedical Semantics. 4
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2013.
The 172 kb genomic DNA region of the O. rufipogon ylg1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica. Functional & Integrative Genomics. 9:97-108.
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2009.
(Poly)phenol-digested metabolites modulate alpha-synuclein toxicity by regulating proteostasis. Scientific Reports. 8:ArticleNo.6965..
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2018.