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2014
Prashar A, Hornyik C, Young V, McLean K, Sharma SK, Dale MFB, Bryan GJ.  2014.  Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth. Theoretical and Applied Genetics. 127:2159-2171.
Joy EJM, Ander EL, Young SD, Black CR, Watts MJ, Chilimba ADC, Chilimba B, Siyame EWP, Kalimbira AA, Hurst R et al..  2014.  Dietary mineral supplies in Africa. Physiologia Plantarum. 151:208-229.
Stockan JA, Baird J, Langan SJ, Young MR, Iason GR.  2014.  Effects of riparian buffer strips on ground beetles (Coleoptera, Carabidae) within an agricultural landscape. Insect Conservation and Diversity. 7:172-184.
Man JG, Yu JS, White PJ, Gu SB, Zhang YL, Guo QF, Shi Y, Wang D.  2014.  Effects of supplemental irrigation with micro-sprinkling hoses on water distribution in soil and grain yield of winter wheat. Field Crops Research. 161:26-37.
Gilhespy S, Anthony S, Cardenas L, Chadwick D, del Prado A, Li C, Middelbrook T, Rees RM, Salas W, Sanz-Cobena A et al..  2014.  First 20 years of DNDC: model evolution. Ecological Modelling. 292:51-62.
Brodie J, Williamson CJ, Smale DA, Kamenos NA, Mieszkowska N, Santos R, Cunliffe M, Steinke M, Yesson C, Anderson KM et al..  2014.  The future of the northeast Atlantic benthic flora in a high CO2 world. Ecology and Evolution. 4:2787-2798.
Makarov VV, Love AJ, Sinitsyna OV, Makarova SS, Yaminsky IV, Taliansky ME, Kalinina NO.  2014.  "Green" nanotechnologies: synthesis of metal nanoparticles using plants. Acta Naturae. 6:35-44.
Deng H, Ma L, Bandaranayaka N, Qin ZW, Mann G, Kyeremeh K, Yu Y, Shepherd T, Naismith JH, O'Hagan D.  2014.  Identification of fluorinases from Streptomyces sp MA37, Norcardia brasiliensis, and Actinoplanes sp N902-109 by genome mining. ChemBioChem. 15:364-368.
Young JC, Waylen KA, Sarkki S, Albon S, Bainbridge I, Balian E, Edwards D, Davidson J, Fairley R, Margerison C et al..  2014.  Improving the science-policy dialogue to meet the challenges of biodiversity conservation: having a conversation rather than talking at one-another. Biodiversity and Conservation. 23:387-404.
Austin Z, Smart JCR, Yearley S, Irvine RJ, White PCL.  2014.  Incentivising the collaborative management of ecological resources: a case study of wild deer in the UK. Land Use Policy. 36:485-491.
Wang J, Thornton B, Yao H.  2014.  Incorporation of urea-derived C-13 into microbial communities in four different agriculture soils. Biology and Fertility of Soils. 50:603-612.
van der Wal R, Miller DR, Irvine RJ, Fiorini S, Amar A, Yearley S, Gill R, Dandy N.  2014.  The influence of information provision on people's landscape preferences: a case study on understorey vegetation of deer-browsed woodlands. Landscape and Urban Planning. 124:129-139.
Zhang LP, Wang XH, Ya ML, Wu YL, Li YY, Zhang ZL.  2014.  Levels of endocrine disrupting compounds in South China Sea. Marine Pollution Bulletin. 85:628-633.
Senapati N, Hulugalle NR, Smith P, Wilson BR, Yeluripati JB, Daniel H, Ghosh S, Lockwood P.  2014.  Modelling soil organic carbon storage with RothC in irrigated Vertisols under cotton cropping systems in the sub-tropics. Soil and Tillage Research. 143:38-49.
Yu P, White PJ, Hochholdinger F, Li CJ.  2014.  Phenotypic plasticity of the maize root system in response to heterogeneous nitrogen availability. Planta. 240:667-678.
Haling RE, Brown LK, Bengough AG, Valentine TA, White PJ, Young IM, George TS.  2014.  Root hair length and rhizosheath mass depend on soil porosity, strength and water content in barley genotypes. Planta. 239:643-651.
Randall E, Young V, Sierotzki H, Scalliet G, Birch PRJ, Cooke DEL, Csukai M, Whisson SC.  2014.  Sequence diversity in the large subunit of RNA polymerase I contributes to Mefenoxam insensitivity in Phytophthora infestans. Molecular Plant Pathology. 15:664-676.
Love AJ, Makarov V, Yaminsky I, Kalinina NO, Taliansky ME.  2014.  The use of tobacco mosaic virus and cowpea mosaic virus for the production of novel metal nanomaterials. Virology. 449:133-139.
2013
Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, Nakao M, Yamamoto Y, Okamoto S, Oouchida K, Hong-Woo C et al..  2013.  The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. Journal of Biomedical Semantics. 4
Chen MH, Sheu SY, James EK, Young CC, Chen WM.  2013.  Azoarcus olearius sp.nov., a nitrogen-fixing bacterium isolated from oil-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. 63:3755-3761.
Seim GL, Ahn CI, Bodis MS, Luwedde F, Miller DD, Hillier S, Tako E, Glahn RP, Young SL.  2013.  Bioavailability of iron in geophagic earths and clay minerals, and their effect on dietary iron absorption using an in vitro digestion/Caco-2 cell model. Food and Function. 4:1263-1270.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, dos Reis Jr FB, Melkonian RJ, Moulin L, James EK, Sprent JI et al..  2013.  Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. International Journal of Systematic and Applied Microbiology. 63:435-441.
Wang D, Yu ZW, White PJ.  2013.  The effect of supplemental irrigation after jointing on leaf senescence and grain filling in wheat. Field Crops Research. 151:35-44.
Chung B, Yoon JY, Palukaitis P.  2013.  Engineered resistance in potato against potato leafroll virus, potato virus A and potato virus Y. Virus Genes. 47:86-92.
Cameron DR, Van Oijen M, Werner C, Butterbach-Bahl K, Grote R, Haas E, Heuvelink GBM, Kiese R, Kros J, Kuhnert M et al..  2013.  Environmental change impacts on the C- and N-cycle of European forests: a model comparison study. Biogeosciences. 10:1751-1773.
Cornulier T, Yoccoz NG, Bretagnolle V, Brommer JE, Butet A, Ecke F, Elston DA, Framstad E, Henttonen H, Hornfeldt B et al..  2013.  Europe-wide dampening of population cycles in keystone herbivores. Science. 340:63-66.
Yitbarek TW, Tadie D, Timer G, Fischer A.  2013.  Evaluating governance processes in the sharing of revenues from wildlife tourism and hunting in Ethiopia. Environmental Conservation. 40:253-265.
Chen B, Arain MA, Khomik M, Trofymow JA, Grant RF, Kurz WA, Yeluripati J, Wang Z.  2013.  Evaluating the impacts of climate variability and disturbance regimes on the historic carbon budget of a forest landscape. Agricultural and Forest Meteorology. 180:265-280.
Yu CL, Karlin DG, Lu YW, Wright K, Chen JP, MacFarlane S.  2013.  Experimental and bioinformatic evidence that raspberry leaf blotch emaravirus P4 is a movement protein of the 30K superfamily. Journal of General Virology. 94:2117-2128.
Yawson DO, Mulholland B, Ball T, Mohan S, White PJ.  2013.  Food security in a water-scarce world: making virtual water compatible with crop water use and food trade. Scientific Papers Series: Management, Economic Engineering in Agriculture and Rural Development. 13:431-443.
Yannic G, Pellissier L, Ortego J, Lecomte N, Couturier S, Cuyler C, Dussault C, Hundertmark KJ, Irvine RJ, Jenkins DA et al..  2013.  Genetic diversity in caribou linked to past and future climate change. Nature Climate Change. 4:132-137.
Laird J, McInally C, Carr C, Doddiah S, Yates G, Chrysanthou E, Khattab A, Love AJ, Geri C, Sadanandom A et al..  2013.  Identification of the domains of Cauliflower mosaic virus protein P6 responsible for the suppression of RNA-silencing and salicylic acid-signaling. Journal of General Virology. 94:2777-2789.
Wang Z, Grant RF, Arain MA, Bernier PY, Chen B, Chen JM, Govind A, Guindon L, Kurz WA, Peng C et al..  2013.  Incorporating weather sensitivity in inventory-based estimates of boreal forest productivity: a meta-analysis of process model results. Ecological Modelling. 260:25-35.
Prashar A, Yildiz J, Bryan GJ, McNicol JW, Jones HG.  2013.  Infra-red thermography for high throughput field phenotyping in Solanum tuberosum. PLoS ONE. 8:e65816.
Gehlot HS, Tak N, Kaushik M, Mitra S, Chen WM, Poweleit N, Panwar D, Poonar N, Parihar R, Tak A et al..  2013.  An invasive Mimosa in India does not adopt the symbionts of its native relatives. Annals of Botany. 112:179-186.
Yang Z, Downie H, Dupuy L, MacDonald M.  2013.  Light-sheet tomography for in situ imaging of Arabidopsis Thaliana roots. Optics Express. 21:16239-16247.
Shaw RF, Pakeman RJ, Young MR, Iason GR.  2013.  Microsite affects willow sapling recovery from bank vole (Myodes glareolus) herbivory, but does not affect grazing risk. Annals of Botany. 112:731-739.
Yao HY, Campbell CD, Chapman SJ, Freitag TE, Nicol GW, Singh BK.  2013.  Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey. Environmental Microbiology. 15:2545-2556.
Makarov V, Rakitina D, Protopopova A, Yaminsky I, Arutiunian A, Love AJ, Taliansky M, Kalinina N.  2013.  Plant coilin: structural characteristics and RNA-binding properties. PLoS ONE. 8:e53571.
Yeretzian C, Pascual EC, Goodman BA.  2013.  Probing free radical processes during storage of extracts from whole roasted coffee beans: impact of O-2 exposure during extraction and storage. Journal of Agricultural and Food Chemistry. 61:3301-3305.
Senapati N, Smith P, Wilson B, Yeluripati JB, Daniel H, Lockwood P, Ghosh S.  2013.  Projections of changes in grassland soil organic carbon under climate change are relatively insensitive to methods of model initialization. European Journal of Soil Science. 64:229-238.
Haling RE, Brown LK, Bengough AG, Young IM, Hallett PD, White PJ, George TS.  2013.  Root hairs improve root penetration, root-soil contact, and phosphorus acquisition in soils of different strength. Journal of Experimental Botany. 64:3711-3721.
2012
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, James EK, Sprent JI, Young JPW, Chen WM.  2012.  Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
Love AJ, Geri C, Laird J, Carr C, Yun BW, Loake GJ, Tada Y, Sadanandom A, Milner JJ.  2012.  Cauliflower mosaic virus protein P6 inhibits signaling responses to salicylic acid and regulates innate immunity. PLoS One. 7:e47535.
Stien A, Ims RA, Albon SD, Fuglei E, Irvine RJ, Ropstad E, Halvorsen O, Langvatn R, Loe LE, Veiberg V et al..  2012.  Congruent responses to weather variability in high arctic herbivores. Biology Letters. 8:1002-1005.
Perkins DM, Yvon-Durocher G, Demars BOL, Reiss J, Pichler DE, Friberg N, Trimmer M, Woodward G.  2012.  Consistent temperature dependence of respiration across ecosystems contrasting in thermal history. Global Change Biology. 18:1300-1311.
Broadley MR, Chilimba ADC, Joy EJM, Young SD, Black CR, Ander EL, Watts MJ, Hurst R, Fairweather-Tait SJ, White PJ et al..  2012.  Dietary requirements for magnesium but not calcium are likely to be met in Malawi based on national food supply data. International Journal for Vitamin and Nutrition Research. 82:192-199.
Yeretzian C, Pascual EC, Goodman BA.  2012.  Effect of roasting conditions and grinding on free radical contents of coffee beans stored in air. Food Chemistry. 131:811-816.
Cheke RA, McWilliam AN, Mbereki C, van der Walt E, Mtobesya B, Magoma RN, Young S, Eberly JP.  2012.  Effects of the organophosphate fenthion for control of the red-billed quelea Quelea quelea on cholinesterase and haemoglobin concentrations in the blood of target and non-target birds. Ecotoxicology. 21:1761-1770.
Yelina NE, Choi K, Chelysheva L, Macaulay M, de Snoo B, Wijnker E, Miller N, Drouaud J, Grelon M, Copenhaver GP et al..  2012.  Epigenetic remodeling of meiotic crossover frequency in arabidopsis thaliana DNA methyltransferase mutants. PLoS Genetics. 8:e1002844.
Begg GS, Wishart J, Young MW, Squire GR, Iannetta PPM.  2012.  Genetic structure among arable populations of Capsella bursa-pastoris L. is linked to functional traits and in-field conditions. Ecography. 35:446-457.
Sausse C, Colbach N, Young MW, Squire GR.  2012.  How to manage the impact of gene flow on oilseed rape grain quality? Simulation case studies of three contrasted landscapes European Journal of Agronomy. 38:32-42.
Stockan JA, Langan SJ, Young MR.  2012.  Investigating riparian margins for vegetation patterns and plant-environment relationships in northeast Scotland. Journal of Environmental Quality. 41:364-372.
McIntosh FM, Maison N, Holtrop G, Young P, Stevens VJ, Ince J, Johnstone AM, Lobley GE, Flint HJ, Louis P.  2012.  Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
Johnson SN, Young MW, Karley AJ.  2012.  Protected raspberry production alters aphid-plant interactions but not aphid population size. Agricultural and Forest Entomology. 14:217-224.
Tan HW, Weir BS, Carter N, Heenan PB, Ridgway HJ, James EK, Sprent JI, Young JPW, Andrews M.  2012.  Rhizobia with 16S rRNA and nifH similar to Mesorhizobium huakuii but Novel recA, glnII, nodA and nodC genes are symbionts of New Zealand Carmichaelinae. PLoS ONE, e47677. 7
Valentine TA, Hallett PD, Binnie K, Young MW, Squire GR, Hawes C, Bengough AG.  2012.  Soil strength and macropore volume limit root elongation rates in many UK agricultural soils. Annals of Botany. 110:259-270.
Gorelkin P, Kalinina N, Love A, Makarov V, Taliansky M, Yaminsky I.  2012.  Synthesis of nanoparticles using plants. Nanoindustry. 7:16-22.
Smith P, Albanito F, Bell M, Bellarby J, Blagodatskiy S, Datta A, Dondini M, Fitton N, Flynn H, Hastings A et al..  2012.  Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
Halliday AM, Lainson FA, Yaga R, Inglis NF, Bridgett S, Nath M, Knox DP.  2012.  Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
2011
Sun XL, Gilroy EM, Chini A, Nurmberg PL, Hein I, Lacomme C, Birch PRJ, Hussain A, Yun BW, Loake GJ.  2011.  ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
Yong SYC, Choong CY, Cheong PL, Pang SL, Amalina RN, Harikrishna JA, Mat-Isa MN, Hedley PE, Milne L, Vaillancourt RE et al..  2011.  Analysis of ESTs generated from inner bark tissue of an Acacia auriculiformis x Acacia mangium hybrid. Tree Genetics and Genomes. 7:143-152.
Debeljak M, Squire GR, Kocev D, Hawes C, Young MW, Dzeroski S.  2011.  Analysis of time series data on agroecosystem vegetation using predictive clustering trees. Ecological Modelling. 222:2524-2529.
Balana BB, Yatich T, Makela M.  2011.  A conjoint analysis of landholder preferences for reward-based land-management contracts in Kapingazi watershed, Eastern Mount Kenya. Journal of Environmental Management. 92:2634-2646.
Frimpong KA, Yawson DO, Baggs EM, Agyarko K.  2011.  Does incorporation of cowpea-maize residue mixes influence nitrous oxide emission and mineral nitrogen release in a tropical luvisol? Nutrient Cycling in Agroecosystems. 91:281-292.
O' Lochlainn SE, Fray RG, Hammond JP, King GJ, White PJ, Young SD, Broadley MR.  2011.  Generation of nonvernal-obligate, faster-cycling Noccaea caerulescens lines through fast neutron mutagenesis. New Phytologist. 189:409-414.
Sait M, Clark EM, Wheelhouse N, Spalding L, Livingstone M, Sachse K, Markey BK, Magnino S, Siarkou VI, Vretou E et al..  2011.  Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. Veterinary Microbiology. 151:284-290.
Xu X, Pan SK, Cheng SF, Zhang B, Mu DS, Ni PX, Zhang GY, Yang S, Li RQ, Wang J et al..  2011.  Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
Glasner JD, Yang C, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van GF, Yang S, Franza T, Expert D et al..  2011.  Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193:2076-2077.
Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJA et al..  2011.  Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathogens. 7:e1002219.
Rhind SM, Kyle CE, Mackie C, Yates K, Duff EI.  2011.  Geographic variation in tissue accumulation of endocrine disrupting compounds (EDCs) in grazing sheep. Environmental Pollution. 159:416-422.
Gyaneshwar P, Hirsch AM, Moulin L, Chen WM, Elliott GN, Bontemps C, Estrada-de los Santos P, Gross E, dos Reis J, F.B et al..  2011.  Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Molecular Plant-Microbe Interactions. 24:1276-1288.
Yao H, Gao Y, Nicol GW, Campbell CD, Prosser JI, Zhang L, Han W, Singh BK.  2011.  Links between ammonia oxidizer community structure, abundance and nitrification potential in acidic soils. Applied and Environmental Microbiology. 77:4618-4625.
Yan X, De Clercq P, Han R, Jones JT, Chen S, Moens M.  2011.  Osmotic responses of different strains of Steinernema carpocapsae. Nematology. 13:845-851.
Fuschino JR, Guschina IA, Dobson G, Yan ND, Harwood JL, Arts MT.  2011.  Rising water temperatures alter lipid dynamics and reduce N-3 essential fatty acid concentrations in Scenedesmus obliquus (Chlorophyta). Journal of Phycology. 47:763-774.
Fuschino JR, Guschina IA, Dobson G, Yan ND, Harwood JL, Arts MT.  2011.  Rising water temperatures alter lipid dynamics and reduce N-3 essential fatty acid concentrations in Scenedesmus obliquus (chlorophyta). Journal of Phycology. 47:763-764.
Yao H, Campbell CD, Qiao XR.  2011.  Soil pH controls nitrification and carbon substrate utilization more than urea or charcoal in some highly acidic soils. Biology and Fertility of Soils. 47:515-522.
Squire GR, Breckling B, Pfeilstetter AD, Jorgensen RB, Lecomte J, Pivard S, Reuter H, Young MW.  2011.  Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.
Dicker AJ, Nath M, Yaga R, Nisbet AJ, Lainson FA, Gilleard JS, Skuce PJ.  2011.  Teladorsagia circumcincta: The transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro. Experimental Parasitology. 127:351-356.
Tolkamp BJ, Allcroft DJ, Barrio JP, Bley TAG, Howie JA, Jacobsen TB, Morgan CA, Schweitzer DPN, Wilkinson S, Yeates MP et al..  2011.  The temporal structure of feeding behaviour. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology. 301:R378-R393.
2010
Hawes C, Squire GR, Hallett PD, Watson CA, Young MW.  2010.  Arable plant communities as indicators of farming practice. Agriculture, Ecosystems and Environment. 138:17-26.
Bontemps C, Elliott GN, Simon MF, Dos Reis J FB, Gross E, Lawton RC, Neto NE, Loureiro MdeF, de Faria SM, Sprent JI et al..  2010.  Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
Louis P, Young P, Holtrop G, Flint HJ.  2010.  Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environmental Microbiology. 12:304-314.
Zhang B, Deng H, Wang HL, Yin R, Hallett PD, Griffiths BS, Daniell TJ.  2010.  Does microbial habitat or community structure drive the functional stability of microbes to stresses following re-vegetation of a severely degraded soil? Soil Biology and Biochemistry. 42:850-859.
Yang S, Peng Q, Zhang Q, Zou L, Li Y, Robert C, Pritchard L, Liu H, Hovey R, Wang Q et al..  2010.  Genome-wide identifiction of HrpL-regulated genes in the necrotrophic phytopathogen Dickeya dadantii 3937. PLoS One. 5:-e13472.
Makarov VV, Obraztsova EA, Solovyev AG, Morozov SY, Taliansky ME, Yaminsky IV, Kalinina NO.  2010.  The internal domain of hordeivirus movement protein TGB1 forms in vitro filamentous structures.. Biochemistry (Moscow). 75:752-758.
Deng H, Zhang B, Yin R, Wang HL, Mitchell SM, Griffiths BS, Daniell TJ.  2010.  Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.
Blum M, Boehler M, Randall E, Young V, Csukai M, Kraus S, Moulin F, Scalliet G, Avrova AO, Whisson SC et al..  2010.  Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.
Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG et al..  2010.  A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
Dos Reis J FB, Simon MF, Gross E, Boddey RM, Elliott GN, Neto NE, Loureiro MdeF, de Queiroz LP, Scotti MR, Chen W-M et al..  2010.  Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Schoaei Z, Deal KR, Langridge P.  2010.  Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. BMC Genomics. 11:-382.
Beale CM, Lennon JJ, Yearsley JM, Brewer MJ, Elston DA.  2010.  Regression analysis of spatial data. Ecology Letters. 13:246-264.
Broadley MR, Alcock J, Alford J, Cartwright P, Foot I, Fairweather-Tait SJ, Hart DJ, Hurst R, Knott P, McGrath SP et al..  2010.  Selenium biofortification of high-yielding winter wheat (Triticum aestivum L.) by liquid or granular Se fertilisation. Plant and Soil. 332:5-18.
Hodgson JG, Sharafi M, Jalili A, Diaz S, Montserrat-Marti G, Palmer C, Cerabolini B, Pierce S, Hamzehee B, Asri Y et al..  2010.  Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
Bontemps C, Elliott GN, Simon MF, dos, Reis J, F.B, Gross E, Neto NE, de Loureiro MF, de Faria SM, Sprent JI et al..  2010.  Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19(1):44-52.
Young S, Wilson MJ, Hillier S, Delbos E.  2010.  Differences and commonalities in physical, chemical and mineralogical properties of Zanzibari geophagic soils. Journal of Chemical Ecology.. 36(1):129-140.
Smith J, Gottschalk P, Bellarby J, Chapman SJ, Lilly A, Towers W, Bell J, Coleman K, Nayak D, Richards M et al..  2010.  Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties. Climate Research. 45:179-192.
Smith J, Gottschalk P, Bellarby J, Chapman SJ, Lilly A, Towers W, Bell J, Coleman K, Nayak D, Richards M et al..  2010.  Estimating changes in Scottish soil carbon stocks using ECOSSE. II. Application. Climate Research. 45:179-192.
Austin Z, Smart JCR, Yearley S, Irvine RJ, White PCL.  2010.  Identifying conflicts and opportunities for collaboration in the management of a wildlife resource: a mixed-methods approach. Wildlife Research. 37(8):647-657.
Shaw RA, Elston DA, Pakeman RJ, Young MR, Iason GR.  2010.  The impacts of pollination, plant characteristics and local density on the reproductive success of a scarce plant species, Salix arbuscula. Plant Ecology. 211:367-377.
Sebert SP, Hyatt MA, Chan LLY, Yiallourides M, Fainberg HP, Patel N, Sharkey D, Stephenson T, Rhind SM, Bell RC et al..  2010.  Influence of prenatal nutrition and obesity on tissue specific fat mass and obesity-associated (FTO) gene expression. Reproduction. 139(1):265-274.
dos, Reis J, F, Simon M, Gross E, Boddey R, Elliott GN, Loureiro M, de Queiroz L, Chen WM, Bontemps C et al..  2010.  Nodulation and nitrogen fixation by mimosa spp. In the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186(4):934-946.
Shaw RF, Iason GR, Pakeman RJ, Young MR.  2010.  Regeneration of Salix arbuscula and Salix lapponum within a large mammal exclosure: the impacts of microsite and herbivory. Restoration Ecology. 18(Suppl. 1):1-9.
Beale CM, Lennon JJ, Yearsley JM, Brewer MJ, Elston DA.  2010.  Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
Beale CM, Lennon JJ, Yearsley JM, Brewer MJ, Elston DA.  2010.  Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
Perez-Barberia FJ, Yearsley JM.  2010.  Sexual selection for fighting skills as a driver of sexual segregation in polygynous ungulates: an evolutionary model. Animal Behaviour. 80(4):745-755.
2009
Song BK, Hein I, Druka A, Waugh R, Marshall DF, Nadarajah K, Yap SJ, Ratnam W.  2009.  The 172 kb genomic DNA region of the O. rufipogon ylg1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica. Functional & Integrative Genomics. 9:97-108.
Squire GR, Hawes C, Begg GS, Young MW.  2009.  Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract
Hallett PD, Feeney D, Bengough AG, Rillig MC, Scrimgeour CM, Young IM.  2009.  Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract
Makarov VV, Rybakova EN, Efimov AV, Dobrov EN, Serebryakova MV, Solovyev AG, Yaminsky IV, Taliansky ME, Morozov SV, Kalinina NO.  2009.  Domain organization of the N-terminal portion of hordeivirus movement protein TGBp1. Journal of General Virology. 90:3022-3032.
Yang D, Zhang T, Zhang K, Greenwood DJ, Hammond JP, White PJ.  2009.  An easily implemented agro-hydrological procedure with dynamic root simulation for water transfer in the crop-soil system: Validation and application. Journal of Hydrology. 370:177-190. Abstract
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2009.  Erratum: Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 154:1019-1019.
McLellan H, Gilroy EM, Yun BW, Birch PRJ, Loake GJ.  2009.  Functional redundancy in the Arabidopsis Cathepsin B gene family contributes to basal defence, the hypersensitive response and senescence. New Phytologist. 183:408-418.
Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T et al..  2009.  Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al..  2009.  Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
Hinsinger P, Bengough AG, Vetterlein D, Young IM.  2009.  Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.
Gregory PJ, Bengough AG, Grinev DV, Schmidt S, Thomas WTB, Wojciechowski T, Young IM.  2009.  Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
Elliott GN, Chou JH, Chen WM, Bloemberg GV, Bontemps C, Martinez-Romero E, Velazquez E, Young JPW, Sprent JI, James EK.  2009.  Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environmental Microbiology. 11(4):762-778.
Irvine RJ, Fiorini S, McLeod J, Turner A, van der Wal R, Armstrong H, Yearley S, White PCL.  2009.  Can managers inform models? Integrating local knowledge into models of red deer habitat use Journal of Applied Ecology. 46(2):344-352.
Pearce-Higgins JW, Yalden DW, Dougall TW, Beale CM.  2009.  Does climate change explain the decline of a trans-Saharan Afro-Palaearctic migrant? Oecologia. 159(3):649-659.
Wang HJ, Shi XZ, Yu DS, Weindorf DC, Huang B, Sun WX, Ritsema CJ, Milne E.  2009.  Factors determining soil nutrient distribution in a small-scaled watershed in the purple soil region of Sichuan Province, China. Soil and Tillage Research. 105(2):300-306.
Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al..  2009.  Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology. 11(10):2510-2525.
2008
Obraztsova EA, Kalinina NO, Taliansky ME, Gabrenaite-Verkhovskaya R, Makinen K, Yaminsky IV.  2008.  Atomic force microscopy of potato virus A.. Colloid Journal. 70:199-201. Abstract
Deeks LK, Bengough AG, Stutter MI, Young IM, Zhang X.  2008.  Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348:431-441. Abstract
Cullen DW, Squire GR, McNicol JW, Jacobs JH, Osborne JL, Ford L, Ramsay G, Scrimgeour CM, Young MW.  2008.  Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape. Journal of the Science of Food and Agriculture. 88:2253-2264. Abstract
Yoshida S, Hallett PD.  2008.  Impact of hydraulic suction history on crack growth mechanics in soil. Water Resources Research. 44:-W00C01. Abstract
Avrova AO, Boevink P, Young V, Grenville-Briggs LJ, van West P, Birch PRJ, Whisson SC.  2008.  A novel Phytophthora infestans haustorium-specific membrane protein is requred for infection of potato. Cellular Microbiology. 10:2271-2284. Abstract
Yahiaoui S, Igartua E, Moralejo M, Ramsay L, Molina-Cano J-L, Ciudad FJ, Lasa JM, Gracia MP, Casas AM.  2008.  Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
Debeljak M, Squire GR, Demsar D, Young MW, Dzeroski S.  2008.  Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
Singh BK, Nunan N, Ridgway KP, McNicol JW, Young JPW, Daniell TJ, Prosser JI, Millard P.  2008.  Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10:534-541. Abstract
Nisbet AJ, Redmond DL, Matthews JB, Watkins C, Yaga R, Jones JT, Nath M, Knox DP.  2008.  Stage-specific gene expression in Teladorsagia circumcincta (Nematoda: Strongylida) infective larvae and early parasitic stages. International Journal for Parasitology. 38:829-838. Abstract
Breen C, Clegg F, Herron MM, Hild GP, Hillier S, Hughes TL, Jones TGJ, Matteson A, Yarwood J.  2008.  Bulk mineralogical characterisation of oilfield reservoir rocks and sandstones using diffuse reflectance infrared fourier transform spectroscopy and partial least squares analysis. Journal of Petroleum Science and Engineering. 60(1):1-17.
Chen WM, de Faria SM, Chou JH, James EK, Elliott GN, Sprent JI, Bontemps C, Young JPW, Vandamme P.  2008.  Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia. International Journal of Systematic and Evolutionary Microbiology. 58(9):2174-2179.
Deeks LK, Bengough AG, Stutter MI, Young IM, Zhang XX.  2008.  Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348(3-4):431-441.
Artz RRE, Chapman SJ, Siegenthaler A, Bortoluzzi E, YliPetays M, Francez AJ.  2008.  Functional microbial diversity in European remediating cutover peatlands is directed by labile carbon. Journal of Applied Ecology. 45(6):1799-1809.
Littlewood NA, Young MR.  2008.  A habitat suitability model for the narrow-headed ant formica exsecta evaluated against independent data. Insect Conservation and Diversity. 1(2):108-113.
Buijs A, Fischer A, Rink D, Young JC.  2008.  Looking beyond superficial knowledge gaps: Understanding public representations of biological diversity. International Journal Biodiversity Science Management. 4(2):65-80.
Singh BK, Nunan N, Ridgway KP, McNicol J, Young JPW, Daniell TJ, Prosser JI, Millard P.  2008.  Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10(2):534-541.
Thornton I, Farago ME, Thums CR, Parrish RR, McGill RAR, Breward N, Fortey NJ, Simpson P, Young SD, Tye AM et al..  2008.  Urban geochemistry: research strategies to assist risk assessment and remediation of brownfield sites in urban areas. Environmental Geochemistry and Health. 30:565-576.
2007
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2007.  Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 152:1767-1774.
Johnson SN, Zhang X, Crawford JW, Gregory PJ, Young IM.  2007.  Egg hatching and survival time of soil-dwelling insect larvae: a partial differential equation model and experimental validation. Ecological Modelling. 202:493-502. Abstract
Zhang X, Johnson SN, Crawford JW, Gregory PJ, Young IM.  2007.  A general random walk model for the leptokurtic distribution of organism movement: theory and application. Ecological Modelling. 200:79-88. Abstract
Sales J, Vali L, Hoyle DV, Yates CM, Amyes SGB, McKendrick IJ.  2007.  The interaction between dam methylation sites and Xha1 restriction digest sites in Escherichia coli O157: H7 EDL933. Journal of Applied Microbiology. 102:820-825. Abstract
Iannetta PPM, Begg GS, Hawes C, Young MW, Russell JR, Squire GR.  2007.  Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
Johnston SL, Souter DM, Erwin SS, Tolkamp BJ, Yearsley JM, Gordon IJ, Illius AW, Kyriazakis I, Speakman JR.  2007.  Associations between basal metabolic rate and reproductive performance in C57BL/6J mice. Journal of Experimental Biology. 210(1):65-74.
Brooker RW, Young JC, Watt AD.  2007.  Climate change and biodiversity: impacts and policy development challenges - a European case study. International Journal of Biodiversity Science and Management. 3:12-30.
Tetzlaff D, Soulsby C, Waldron S, Malcolm BDIAPJS, Lilly A, Youngson AF.  2007.  Conceptualisation of runoff processes using tracers and GIS analysis in a nested mesoscale catchment. Hydrological Processes. 21(10):1289-1307.
Young J, Richards C, Fischer A, Halada L, Kull T, Kuzniar A, Tartes U, Uzunov Y, Watt A.  2007.  Conflicts between biodiversity conservation and human acivities in the CEEC. Ambio. 36(7):545-550.
Prosser JI, Bohannan BJM, Curtis TP, Ellis RJ, Firestone MK, Freckleton RP, Green JL, Green LE, Killham K, Lennon JJ et al..  2007.  Essay - The role of ecological theory in microbial ecology. Nature Reviews Microbiology. 5(5):384-392.
Duncan AJ, Elwert C, Villalba JJ, Yearsley J, Pouloupoulou I, Gordon IJ.  2007.  How does pattern of feeding and rate of nutrient delivery influence conditioned food preferences? Oecologia. 153(3):617-624.
Tolkamp BJ, Yearsley JM, Gordon IJ, Illius AW, Speakman JR, Kyriazakis I.  2007.  Predicting the effects of body fatness on food intake and performance of sheep. British Journal of Nutrition. 97(6):1206-1215.
Beale CM, Lennon JJ, Elston DA, Brewer MJ, Yearsley JM.  2007.  Red herrings remain in geographical ecology: a reply to Hawkins et al. (2007). Ecography. 30:845-847.
Fischer A, Young J.  2007.  Understanding mental constructs of biodiversity - implications for biodiversity management and conservation. Biological Conservation. 136(2):271-282.
Smith DG, Mayes RW, Hollands T, Cuddeford D, Yule HH, Ladrero CMM, Gillen E.  2007.  Validating the alkane pair technique to estimate dry matter intake in equids. Journal of Agricultural Science. 145:273-281.
2006
Bos JIB, Kanneganti T-D, Young C, Cakir C, Huitema E, Win J, Armstrong MR, Birch PRJ, Kamoun S.  2006.  The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant Journal. 48:165-176. Abstract
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui A, Zhan J, McDonald BA.  2006.  Differential selection on Rhynchosporium secalis during parasitic and saprophytic phases in the barley scald disease cycle. Phytopathology. 96:1214-1222. Abstract
Simons V, Morrissey JP, Latijnhouwers M, Csukai M, Cleaver A, Yarrow C, Osborn A.  2006.  Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrobial Agents and Chemotherapy. 50:2732-2740.
Johnson SN, Zhang X, Crawford J, Gregory PJ, Hix N, Jarvis S, Murray PJ, Young IM.  2006.  Effects of CO2 on the searching behaviour of the root-feeding clover weevil Sitona lepidus (Coleoptera: Curculionidae). Bulletin of Entomological Research. 96:361-366. Abstract
Yeates GW, Boag B.  2006.  Female size shows similar trends in all clades of the phylum Nematoda. Nematology. 8:111-127. Abstract
Feeney D, Hallett PD, Rodger S, Bengough AG, White NA, Young IM.  2006.  Impact of fungal and bacterial biocides on microbial induced water repellency in arable soil. Geoderma. 135:72-80. Abstract
Nunan N, Ritz K, Rivers M, Feeney D, Young IM.  2006.  Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract
Zhang X, Johnson SN, Gregory PJ, Crawford JW, Young IM, Murray PJ, Jasinka E.  2006.  Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui AH, Zhan J, McDonald BA.  2006.  Pathogen evolution in response to host resistance genes: Evidence from field experiments with Rhynchosporium secalis on barley. Phytopathology. 96:S2-S2.
MacMillan K, Blok VC, Young I, Crawford J, Wilson MJ.  2006.  Quantification of the slug parasitic nematode Phasamarhabditis hermaphrodita from soil samples using real time qPCR. International Journal for Parasitology. 36:1453-1461. Abstract
Holeva R, Phillips MS, Neilson R, Brown DJF, Young V, Boutsika K, Blok VC.  2006.  Real-time PCR detection and quantification of vector trichodorid nematodes and Tobacco rattle virus. Molecular and Cellular Probes. 20:203-211. Abstract
Feeney D, Crawford JW, Daniell TJ, Hallett PD, Nunan N, Ritz K, Rivers M, Young IM.  2006.  Three-dimensional microorganisation of the soil-root-microbe system. Microbial Ecology. 52:151-158. Abstract
Johnston S, Grune T, Bell L, Murray S, Souter D, Erwin S, Yearsley J, Gordon I, Illius A, Kyriazakis I et al..  2006.  Having it all - historical energy intakes do not generate the anticipated trade-offs in fecundity. Proceedings of the Royal Society of London, B. 273(1592):1369-1374.
Young KR, Aspinall RJ.  2006.  Kaleidoscoping landscapes, shifting perspectives. Professional Geographer. 58(4):436-447.
Yuangen Y, Campbell CD, Clark L, Cameron CM, Paterson E.  2006.  Microbial indicators of heavy metal contamination in urban and rural soils. Chemosphere. 63(11):1942-1952.
Yearsley JM, Villalba J, Kyriazakis I, Speakman JR, Tolkamp BJ, Illius AW, Gordon IJ, Duncan AJ.  2006.  A theory of associating food types with their post-ingestive consequences. American Naturalist. 167(5):705-716.
2005
Thomson NR, Yeats C, Bell K, Holden MTG, Bentley SD, Livingstone M, Cerde AM, Harris B, Doggett J, Ormond D et al..  2005.  The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to inter-species variation.. Genome Research. 15:629-640. Abstract
Zhang X, Deeks LK, Bengough AG, Crawford JW, Young IM.  2005.  Determination of soil hydraulic conductivity with the lattice Boltzmann method and soil thin-section technique. Journal of Hydrology. 306:59-70.
Bruneau PMC, Davidson DA, Grieve IC, Young IM, Nunan N.  2005.  The effects of soil horizons and faunal excrement on bacterial distribution in an upland grassland soil. FEMS Microbiology Ecology. 52:139-144. Abstract
Randall TA, Dwyer RA, Huitema E, Beyer K, Cvitanich C, Kelkar H, Ah Fong AMV, Gates K, Roberts S, Yatzkan E et al..  2005.  Large-scale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi. Molecular Plant-Microbe Interactions. 18:229-243. Abstract
Zhang X, Crawford JW, Deeks LK, Stutter MI, Bengough AG, Young IM.  2005.  A mass balance based numerical method for the fractional advection-dispersion equation: Theory and application. Water Resources Research. 41:-W07029. Abstract
Humphris SN, Bengough AG, Griffiths BS, Killham K, Rodger S, Stubbs V, Valentine TA, Young IM.  2005.  Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize. FEMS Microbiology Ecology. 54:123-130. Abstract
Chen W-M, James EK, Chou J-H, Sheu S-Y, Yang S-Z, Sprent JI.  2005.  β-Rhizobia from Mimosa pigra, a newly discovered invasive plant in Taiwan. New Phytologist. 168:661-675. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.