Publications list
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β-Rhizobia from Mimosa pigra, a newly discovered invasive plant in Taiwan. New Phytologist. 168:661-675. Abstract
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2005.
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2005.
Determination of soil hydraulic conductivity with the lattice Boltzmann method and soil thin-section technique. Journal of Hydrology. 306:59-70.
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2005.
The effects of soil horizons and faunal excrement on bacterial distribution in an upland grassland soil. FEMS Microbiology Ecology. 52:139-144. Abstract
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2005.
Large-scale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi. Molecular Plant-Microbe Interactions. 18:229-243. Abstract
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2005.
A mass balance based numerical method for the fractional advection-dispersion equation: Theory and application. Water Resources Research. 41:-W07029. Abstract
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2005.
Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize. FEMS Microbiology Ecology. 54:123-130. Abstract
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2005.
Having it all - historical energy intakes do not generate the anticipated trade-offs in fecundity. Proceedings of the Royal Society of London, B. 273(1592):1369-1374.
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2006.
Kaleidoscoping landscapes, shifting perspectives. Professional Geographer. 58(4):436-447.
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2006.
Microbial indicators of heavy metal contamination in urban and rural soils. Chemosphere. 63(11):1942-1952.
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2006.
A theory of associating food types with their post-ingestive consequences. American Naturalist. 167(5):705-716.
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2006.
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2006.
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2006.
Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrobial Agents and Chemotherapy. 50:2732-2740.
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2006.
Effects of CO2 on the searching behaviour of the root-feeding clover weevil Sitona lepidus (Coleoptera: Curculionidae). Bulletin of Entomological Research. 96:361-366. Abstract
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2006.
Female size shows similar trends in all clades of the phylum Nematoda. Nematology. 8:111-127. Abstract
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2006.
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2006.
Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract
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2006.
Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract
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2006.
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2006.
Quantification of the slug parasitic nematode Phasamarhabditis hermaphrodita from soil samples using real time qPCR. International Journal for Parasitology. 36:1453-1461. Abstract
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2006.
Real-time PCR detection and quantification of vector trichodorid nematodes and Tobacco rattle virus. Molecular and Cellular Probes. 20:203-211. Abstract
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2006.
Three-dimensional microorganisation of the soil-root-microbe system. Microbial Ecology. 52:151-158. Abstract
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2006.
Associations between basal metabolic rate and reproductive performance in C57BL/6J mice. Journal of Experimental Biology. 210(1):65-74.
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2007.
Climate change and biodiversity: impacts and policy development challenges - a European case study. International Journal of Biodiversity Science and Management. 3:12-30.
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2007.
Conceptualisation of runoff processes using tracers and GIS analysis in a nested mesoscale catchment. Hydrological Processes. 21(10):1289-1307.
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2007.
Conflicts between biodiversity conservation and human acivities in the CEEC. Ambio. 36(7):545-550.
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2007.
Essay - The role of ecological theory in microbial ecology. Nature Reviews Microbiology. 5(5):384-392.
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2007.
How does pattern of feeding and rate of nutrient delivery influence conditioned food preferences? Oecologia. 153(3):617-624.
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2007.
Predicting the effects of body fatness on food intake and performance of sheep. British Journal of Nutrition. 97(6):1206-1215.
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2007.
Red herrings remain in geographical ecology: a reply to Hawkins et al. (2007). Ecography. 30:845-847.
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2007.
Understanding mental constructs of biodiversity - implications for biodiversity management and conservation. Biological Conservation. 136(2):271-282.
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2007.
Validating the alkane pair technique to estimate dry matter intake in equids. Journal of Agricultural Science. 145:273-281.
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2007.
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2007.
Egg hatching and survival time of soil-dwelling insect larvae: a partial differential equation model and experimental validation. Ecological Modelling. 202:493-502. Abstract
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2007.
A general random walk model for the leptokurtic distribution of organism movement: theory and application. Ecological Modelling. 200:79-88. Abstract
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2007.
The interaction between dam methylation sites and Xha1 restriction digest sites in Escherichia coli O157: H7 EDL933. Journal of Applied Microbiology. 102:820-825. Abstract
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2007.
Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
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2007.
Bulk mineralogical characterisation of oilfield reservoir rocks and sandstones using diffuse reflectance infrared fourier transform spectroscopy and partial least squares analysis. Journal of Petroleum Science and Engineering. 60(1):1-17.
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2008.
Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia. International Journal of Systematic and Evolutionary Microbiology. 58(9):2174-2179.
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2008.
Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348(3-4):431-441.
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2008.
Functional microbial diversity in European remediating cutover peatlands is directed by labile carbon. Journal of Applied Ecology. 45(6):1799-1809.
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2008.
A habitat suitability model for the narrow-headed ant formica exsecta evaluated against independent data. Insect Conservation and Diversity. 1(2):108-113.
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2008.
Looking beyond superficial knowledge gaps: Understanding public representations of biological diversity. International Journal Biodiversity Science Management. 4(2):65-80.
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2008.
Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10(2):534-541.
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2008.
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2008.
Urban geochemistry: research strategies to assist risk assessment and remediation of brownfield sites in urban areas. Environmental Geochemistry and Health. 30:565-576.
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2008.
Atomic force microscopy of potato virus A.. Colloid Journal. 70:199-201. Abstract
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2008.
Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348:431-441. Abstract
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2008.
Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape. Journal of the Science of Food and Agriculture. 88:2253-2264. Abstract
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2008.
Impact of hydraulic suction history on crack growth mechanics in soil. Water Resources Research. 44:-W00C01. Abstract
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2008.
A novel Phytophthora infestans haustorium-specific membrane protein is requred for infection of potato. Cellular Microbiology. 10:2271-2284. Abstract
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2008.
Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
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2008.
Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
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2008.
Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10:534-541. Abstract
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2008.
Stage-specific gene expression in Teladorsagia circumcincta (Nematoda: Strongylida) infective larvae and early parasitic stages. International Journal for Parasitology. 38:829-838. Abstract
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2008.
Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environmental Microbiology. 11(4):762-778.
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2009.
Can managers inform models? Integrating local knowledge into models of red deer habitat use Journal of Applied Ecology. 46(2):344-352.
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2009.
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2009.
Does climate change explain the decline of a trans-Saharan Afro-Palaearctic migrant? Oecologia. 159(3):649-659.
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2009.
Factors determining soil nutrient distribution in a small-scaled watershed in the purple soil region of Sichuan Province, China. Soil and Tillage Research. 105(2):300-306.
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2009.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other rhizobia. Environmental Microbiology. 11(10):2510-2525.
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2009.
The 172 kb genomic DNA region of the O. rufipogon ylg1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica. Functional & Integrative Genomics. 9:97-108.
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2009.
Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract
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2009.
Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract
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2009.
Domain organization of the N-terminal portion of hordeivirus movement protein TGBp1. Journal of General Virology. 90:3022-3032.
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2009.
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2009.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
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2009.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
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2009.
Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.
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2009.
Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
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2009.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19(1):44-52.
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2010.
Differences and commonalities in physical, chemical and mineralogical properties of Zanzibari geophagic soils. Journal of Chemical Ecology.. 36(1):129-140.
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2010.
Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties. Climate Research. 45:179-192.
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2010.
Estimating changes in Scottish soil carbon stocks using ECOSSE. II. Application. Climate Research. 45:179-192.
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2010.
Identifying conflicts and opportunities for collaboration in the management of a wildlife resource: a mixed-methods approach. Wildlife Research. 37(8):647-657.
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2010.
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2010.
Influence of prenatal nutrition and obesity on tissue specific fat mass and obesity-associated (FTO) gene expression. Reproduction. 139(1):265-274.
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2010.
Nodulation and nitrogen fixation by mimosa spp. In the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186(4):934-946.
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2010.
Regeneration of Salix arbuscula and Salix lapponum within a large mammal exclosure: the impacts of microsite and herbivory. Restoration Ecology. 18(Suppl. 1):1-9.
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2010.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
Sexual selection for fighting skills as a driver of sexual segregation in polygynous ungulates: an evolutionary model. Animal Behaviour. 80(4):745-755.
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2010.
Arable plant communities as indicators of farming practice. Agriculture, Ecosystems and Environment. 138:17-26.
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2010.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
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2010.
Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environmental Microbiology. 12:304-314.
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2010.
Does microbial habitat or community structure drive the functional stability of microbes to stresses following re-vegetation of a severely degraded soil? Soil Biology and Biochemistry. 42:850-859.
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2010.
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2010.
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2010.
The internal domain of hordeivirus movement protein TGB1 forms in vitro filamentous structures.. Biochemistry (Moscow). 75:752-758.
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2010.
Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.
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2010.
Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.
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2010.
A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
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2010.
Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
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2010.
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2010.
Regression analysis of spatial data. Ecology Letters. 13:246-264.
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2010.
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2010.
Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
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2010.
ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
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2011.
Analysis of ESTs generated from inner bark tissue of an Acacia auriculiformis x Acacia mangium hybrid. Tree Genetics and Genomes. 7:143-152.
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2011.
Analysis of time series data on agroecosystem vegetation using predictive clustering trees. Ecological Modelling. 222:2524-2529.
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2011.
A conjoint analysis of landholder preferences for reward-based land-management contracts in Kapingazi watershed, Eastern Mount Kenya. Journal of Environmental Management. 92:2634-2646.
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2011.
Does incorporation of cowpea-maize residue mixes influence nitrous oxide emission and mineral nitrogen release in a tropical luvisol? Nutrient Cycling in Agroecosystems. 91:281-292.
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2011.
Generation of nonvernal-obligate, faster-cycling Noccaea caerulescens lines through fast neutron mutagenesis. New Phytologist. 189:409-414.
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2011.
Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. Veterinary Microbiology. 151:284-290.
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2011.
Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
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2011.
Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193:2076-2077.
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2011.
Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathogens. 7:e1002219.
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2011.
Geographic variation in tissue accumulation of endocrine disrupting compounds (EDCs) in grazing sheep. Environmental Pollution. 159:416-422.
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2011.
Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Molecular Plant-Microbe Interactions. 24:1276-1288.
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2011.
Links between ammonia oxidizer community structure, abundance and nitrification potential in acidic soils. Applied and Environmental Microbiology. 77:4618-4625.
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2011.
Osmotic responses of different strains of Steinernema carpocapsae. Nematology. 13:845-851.
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2011.
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2011.
Rising water temperatures alter lipid dynamics and reduce N-3 essential fatty acid concentrations in Scenedesmus obliquus (Chlorophyta). Journal of Phycology. 47:763-774.
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2011.
Rising water temperatures alter lipid dynamics and reduce N-3 essential fatty acid concentrations in Scenedesmus obliquus (chlorophyta). Journal of Phycology. 47:763-764.
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2011.
Soil pH controls nitrification and carbon substrate utilization more than urea or charcoal in some highly acidic soils. Biology and Fertility of Soils. 47:515-522.
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2011.
Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.
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2011.
Teladorsagia circumcincta: The transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro. Experimental Parasitology. 127:351-356.
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2011.
The temporal structure of feeding behaviour. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology. 301:R378-R393.
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2011.
Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
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2012.
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2012.
Congruent responses to weather variability in high arctic herbivores. Biology Letters. 8:1002-1005.
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2012.
Consistent temperature dependence of respiration across ecosystems contrasting in thermal history. Global Change Biology. 18:1300-1311.
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2012.
Dietary requirements for magnesium but not calcium are likely to be met in Malawi based on national food supply data. International Journal for Vitamin and Nutrition Research. 82:192-199.
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2012.
Effect of roasting conditions and grinding on free radical contents of coffee beans stored in air. Food Chemistry. 131:811-816.
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2012.
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2012.
Epigenetic remodeling of meiotic crossover frequency in arabidopsis thaliana DNA methyltransferase mutants. PLoS Genetics. 8:e1002844.
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2012.
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2012.
How to manage the impact of gene flow on oilseed rape grain quality? Simulation case studies of three contrasted landscapes European Journal of Agronomy. 38:32-42.
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2012.
Investigating riparian margins for vegetation patterns and plant-environment relationships in northeast Scotland. Journal of Environmental Quality. 41:364-372.
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2012.
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2012.
Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
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2012.
Protected raspberry production alters aphid-plant interactions but not aphid population size. Agricultural and Forest Entomology. 14:217-224.
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2012.
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2012.
Soil strength and macropore volume limit root elongation rates in many UK agricultural soils. Annals of Botany. 110:259-270.
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2012.
Synthesis of nanoparticles using plants. Nanoindustry. 7:16-22.
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2012.
Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
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2012.
Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
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2012.
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies. Journal of Biomedical Semantics. 4
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2013.
Azoarcus olearius sp.nov., a nitrogen-fixing bacterium isolated from oil-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. 63:3755-3761.
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2013.
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2013.
Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. International Journal of Systematic and Applied Microbiology. 63:435-441.
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2013.
The effect of supplemental irrigation after jointing on leaf senescence and grain filling in wheat. Field Crops Research. 151:35-44.
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2013.
Engineered resistance in potato against potato leafroll virus, potato virus A and potato virus Y. Virus Genes. 47:86-92.
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2013.
Environmental change impacts on the C- and N-cycle of European forests: a model comparison study. Biogeosciences. 10:1751-1773.
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2013.
Europe-wide dampening of population cycles in keystone herbivores. Science. 340:63-66.
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2013.
Evaluating governance processes in the sharing of revenues from wildlife tourism and hunting in Ethiopia. Environmental Conservation. 40:253-265.
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2013.
Evaluating the impacts of climate variability and disturbance regimes on the historic carbon budget of a forest landscape. Agricultural and Forest Meteorology. 180:265-280.
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2013.
Experimental and bioinformatic evidence that raspberry leaf blotch emaravirus P4 is a movement protein of the 30K superfamily. Journal of General Virology. 94:2117-2128.
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2013.
Food security in a water-scarce world: making virtual water compatible with crop water use and food trade. Scientific Papers Series: Management, Economic Engineering in Agriculture and Rural Development. 13:431-443.
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2013.
Genetic diversity in caribou linked to past and future climate change. Nature Climate Change. 4:132-137.
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2013.
Identification of the domains of Cauliflower mosaic virus protein P6 responsible for the suppression of RNA-silencing and salicylic acid-signaling. Journal of General Virology. 94:2777-2789.
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2013.
Incorporating weather sensitivity in inventory-based estimates of boreal forest productivity: a meta-analysis of process model results. Ecological Modelling. 260:25-35.
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2013.
Infra-red thermography for high throughput field phenotyping in Solanum tuberosum. PLoS ONE. 8:e65816.
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2013.
An invasive Mimosa in India does not adopt the symbionts of its native relatives. Annals of Botany. 112:179-186.
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2013.
Light-sheet tomography for in situ imaging of Arabidopsis Thaliana roots. Optics Express. 21:16239-16247.
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2013.
Microsite affects willow sapling recovery from bank vole (Myodes glareolus) herbivory, but does not affect grazing risk. Annals of Botany. 112:731-739.
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2013.
Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey. Environmental Microbiology. 15:2545-2556.
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2013.
Plant coilin: structural characteristics and RNA-binding properties. PLoS ONE. 8:e53571.
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2013.
Probing free radical processes during storage of extracts from whole roasted coffee beans: impact of O-2 exposure during extraction and storage. Journal of Agricultural and Food Chemistry. 61:3301-3305.
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2013.
Projections of changes in grassland soil organic carbon under climate change are relatively insensitive to methods of model initialization. European Journal of Soil Science. 64:229-238.
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2013.
Root hairs improve root penetration, root-soil contact, and phosphorus acquisition in soils of different strength. Journal of Experimental Botany. 64:3711-3721.
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2013.
BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. Journal of Biomedical Semantics. 5
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2014.
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2014.
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2014.
A chloroplast retrograde signal regulates nuclear alternative splicing. Science. 344:427-430.
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2014.
A commentary on occupational infectious diseases due to agricultural practices in Sub-Saharan Africa. Biomass and Bioenergy. 70:99-111.
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2014.
Community driven coastal management: an example of the implementation of a coastal defence bund on South Uist, Scottish Outer Hebrides. Ocean and Coastal Management. 94:30-37.
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2014.
Complete genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. Standards in Genomic Sciences. 9
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2014.
Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth. Theoretical and Applied Genetics. 127:2159-2171.
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2014.
Dietary mineral supplies in Africa. Physiologia Plantarum. 151:208-229.
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2014.
Effects of riparian buffer strips on ground beetles (Coleoptera, Carabidae) within an agricultural landscape. Insect Conservation and Diversity. 7:172-184.
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2014.
Effects of supplemental irrigation with micro-sprinkling hoses on water distribution in soil and grain yield of winter wheat. Field Crops Research. 161:26-37.
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2014.
Expectations and experiences of diverse forms of knowledge use: the case of the UK National Ecosystem Assessment. Environment and Planning C. 32:229-246.
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2014.
First 20 years of DNDC: model evolution. Ecological Modelling. 292:51-62.
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2014.
The future of the northeast Atlantic benthic flora in a high CO2 world. Ecology and Evolution. 4:2787-2798.
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2014.
"Green" nanotechnologies: synthesis of metal nanoparticles using plants. Acta Naturae. 6:35-44.
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2014.
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2014.
Improving the science-policy dialogue to meet the challenges of biodiversity conservation: having a conversation rather than talking at one-another. Biodiversity and Conservation. 23:387-404.
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2014.
Incentivising the collaborative management of ecological resources: a case study of wild deer in the UK. Land Use Policy. 36:485-491.
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2014.
Incorporation of urea-derived C-13 into microbial communities in four different agriculture soils. Biology and Fertility of Soils. 50:603-612.
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2014.
The influence of information provision on people's landscape preferences: a case study on understorey vegetation of deer-browsed woodlands. Landscape and Urban Planning. 124:129-139.
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2014.
The length of micro-sprinkling hoses delivering supplemental irrigation affects photosynthesis and dry matter production of winter wheat. Field Crops Research. 168:65-74.
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2014.
Levels of endocrine disrupting compounds in South China Sea. Marine Pollution Bulletin. 85:628-633.
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2014.
Modelling soil organic carbon storage with RothC in irrigated Vertisols under cotton cropping systems in the sub-tropics. Soil and Tillage Research. 143:38-49.
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2014.
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2014.
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2014.
Sequence diversity in the large subunit of RNA polymerase I contributes to Mefenoxam insensitivity in Phytophthora infestans. Molecular Plant Pathology. 15:664-676.
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2014.
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2014.
Acidophilic denitrifiers dominate the N2O production in a 100-year-old tea orchard soil. Environmental Science and Pollution Research. 22:4173-4182.
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2015.
Adding ‘iterativity’ to the credibility, relevance, legitimacy: A novel scheme to highlight dynamic aspects of science-policy interfaces. Environmental Science and Policy. 54:505-512.
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2015.
Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation. Plant Cell Reports. 34:495-505.
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2015.
C-13 PLFAs: a key to open the soil microbial black box? Plant and Soil. 392:3-15.
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2015.
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2015.
Deterministic processes vary during community assembly for ecologically dissimilar taxa. Nature Communications. 6
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2015.
Distributions of carbon and nitrogen isotopes in Scotland's topsoil: a national-scale study. European Journal of Soil Science. 66:1002-1011.
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2015.
The effect of storage on microbial activity and community structure of drained and flooded paddy soils. Journal of Soils and Sediments. 15:880-889.
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2015.
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2015.