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Waugh R, Marshall DF, Thomas WTB, Comadran J, Russell JR, Close T, Stein N, Hayes P, Muehlbauer G, Cockram J et al..  2010.  Whole-genome association mapping in elite inbred crop varieties. Genome. 53:967-972.
Mudge SM, Meier-Augenstein W, Eadsforth C, DeLeo P.  2010.  What contribution do detergent fatty alcohols make to sewage discharges and the marine environment? Journal of Environmental Monitoring. 12:1846-1856.
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Johnson SN, Anderson EA, Dawson G, Griffiths DW.  2008.  Varietal susceptibility of potatoes to wireworm herbivory. Agricultural and Forest Entomology. 10:167-174. Abstract
Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan GW, Johnson IT, Mariman EC, Elliott RM et al..  2009.  Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes and Nutrition. 4:95-102.
Shepherd LVT, Bradshaw JE, Dale MFB, McNicol JW, Pont SDA, Mottram DS, Davies HV.  2010.  Variation in acrylamide producing potential in potato: Segregation of the trait in a breeding population. Food Chemistry. 123:568-573.
Swanston JS, Newton AC, Hoad SP, Spoor W.  2006.  Variation across environments in patterns of water uptake and endosperm modification in barley varieties and variety mixtures. Journal of the Science of Food and Agriculture. 86:826-833. Abstract
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Lees AK, Wale SJ, van de Graaf P, Brierley JL.  2005.  The use of molecular diagnostics to investigate the epidemiology of potato diseases. Australasian Plant Pathology. 34:449-455. Abstract
Davidson RS, Marion G, White PCL, Hutchings MR.  2009.  Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
Torrance L, Andreev I, Gabrenaite-Verhouskay R, Cowan GH, Makinen K, Taliansky ME.  2006.  An unusual structure at one end of potato potyvirus particles. Journal of Molecular Biology. 357:1-8.
Torrance L, Lukhovitskaya NI, Schepetilnikov MV, Cowan GH, Ziegler A, Savenkov EI.  2009.  Unusual long-distance movement strategies of Potato mop-top virus RNAs in Nicotiana benthamiana. Molecular Plant-Microbe Interactions. 22:381-390.
Zhang K, Greenwood DJ, Spracklen WP, Rahn CR, Hammond JP, White PJ, Burns IG.  2010.  A universal agro-hydrological model for water and nitrogen cycles in the soil-crop system SMCR_N: Critical update and further validation. Agricultural Water Management. 97:1411-1422.
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Syed NH, Sureshsundar S, Wilkinson MJ, Bhau BS, Cavalcanti JJV, Flavell AJ.  2005.  Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.
Haupt S, Cowan GH, Ziegler A, Roberts AG, Oparka KJ, Torrance L.  2005.  Two plant-viral movement proteins traffic in the endocytic recycling pathway. Plant Cell. 17:164-181. Abstract
Joshi MV, Mann SG, Antelmann H, Widdick DA, Fyans JK, Chandra G, Hutchings MI, Toth IK, Hecker M, Loria R et al..  2010.  The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
Bahar B, Moloney AP, Monahan FJ, Harrison SM, Zazzo A, Scrimgeour CM, Begley IS, Schmidt O.  2009.  Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
Ellis CJ, Crittenden PD, Scrimgeour CM, Ashcroft CJ.  2005.  Translocation of 15N indicates nitrogen recycling in the mat-forming lichen Cladonia portentosa. New Phytologist. 168:423-434. Abstract
Potokina E, Druka A, Luo ZW, Waugh R, Kearsey MJ.  2009.  The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
Ballingall KT, Rocchi M, McKeever DJ, Wright F.  2010.  Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.
Birch PRJ, Rehmany AP, Pritchard L, Kamoun S, Beynon JL.  2006.  Trafficking arms: oomycete effectors enter host plant cells. Trends in Microbiology. 14:8-11. Abstract
Tilsner J, Oparka KJ.  2010.  Tracking the green invaders: advances in imaging virus infection in plants. Biochemical Journal. 430:21-37.
Margaritopoulos JT, Kasprowicz L, Malloch GL, Fenton B.  2009.  Tracking the global dispersal of a cosmopolitan insect pest, the peach potato aphid. BMC Ecology. 9:-13. Abstract
Birch PRJ, Armstrong MR, Bos J, Boevink P, Gilroy EM, Taylor RM, Wawra S, Pritchard L, Conti L, Ewan R et al..  2009.  Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WTB, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A et al..  2008.  Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork. BMC Genetics. 9:-73. Abstract
Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F.  2009.  TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics. 25:126-127.
Mueller LA, Tanksley SD, Giovannoni JJ, van Eck J, Stack S, Choi D, Kim BD, Chen M, Cheng Z, Li C et al..  2005.  The tomato sequencing project, the first cornerstone of the international Solanaceae project (SOL). Comparative and Functional Genomics. 6:153-158. Abstract
Potokina E, Druka A, Luo ZW, Moscou M, Wise R, Waugh R, Kearsey MJ.  2008.  Tissue-dependent limited pleiotropy affects gene expression in barley. Plant Journal. 56:287-296.
Tilston EL, Halpin C, Hopkins DW.  2008.  Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere. Biology and Fertility of Soils. 44:897-901. Abstract
Gregorich EG, Rochette P, Hopkins DW, McKim UF, St-Georges P.  2006.  Tillage-induced environmental conditions in soil and substrate limitation determine biogenic gas production. Soil Biology & Biochemistry. 38:2614-2628. Abstract
Goodall N, Kisiswa L, Prashar A, Faulkner S, Tokarczuk P, Singh K, Erichsen JT, Guggenheim J, Halfter W, Wride MA.  2009.  Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
Feeney D, Crawford JW, Daniell TJ, Hallett PD, Nunan N, Ritz K, Rivers M, Young IM.  2006.  Three-dimensional microorganisation of the soil-root-microbe system. Microbial Ecology. 52:151-158. Abstract
Jones HG, Serraj R, Loveys BR, Xiong LH, Wheaton A, Price AH.  2009.  Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
Hackett CA, Milne I, Bradshaw JE, Luo ZW.  2007.  TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract
Wright HW, Bartley K, Nisbet AJ, McDevitt RM, Sparks NHC, Brocklehurst S, Huntley JF.  2009.  The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.
Pearce MC, Chase-Topping ME, McKendrick IJ, Mellor DJ, Locking ME, Allison L, Ternent HE, Matthews L, Knight HI, Smith AW et al..  2009.  Temporal and spatial patterns of bovine Escherichia coli O157 prevalence and comparison of temporal changes in the patterns of phage types associated with bovine shedding and human E. coli O157 cases in Scotland between 1998-2000 and 2002-2004. BMC Microbiology. 9:-276.
Broadley MR, White PJ, Hammond JP, Zelko I, Lux A.  2007.  Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
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Mess A, Squire GR, Perry JN, Angevin F, Gomez M, Townend P, Sausse C, Breckling B, Langrell S, Dzeroski S et al..  2009.  Sustainable introduction of GM crops into European agriculture: a summary report of the FP6 SIGMEA research project. Ol. 16:37-51.
Iannetta PPM, Begg GS, Valentine TA, Wishart J.  2010.  Sustainable disease control using weeds as indicators: Capsella bursa pastoris and Tobacco Rattle Virus. Weed Research. 50:511-514.
Newton AC, Duncan JM, Augustin NH, Guy DC, Cooke DEL.  2010.  Survival, distribution and genetic variability of inoculum of the strawberry red core pathogen, Phytophthora fragariae var. fragariae, in soil. Plant Pathology. 59:472-479.
Hammond JP, White PJ.  2008.  Sucrose transport in the phloem; integrating root responses to phosphorus starvation. Journal of Experimental Botany. 59:93-109. Abstract
Shillam LL, Hopkins DW, Badalucco L, Laudicina VA.  2008.  Structural diversity and enzyme activity of volcanic soils at different stages of development and response to experimental disturbance. Soil Biology & Biochemistry. 40:2182-2185. Abstract
Weaver J, Briscoe T, Hou M, Goodman C, Kata S, Ross HA, McDougall GJ, Stewart D, Riches A.  2009.  Strawberry polyphenols are equally cytotoxic to tumourigenic and normal human breast and prostate cell lines. International Journal of Oncology. 34:777-786.
Tyler A, Hunter PD, Carvalho L, Codd GA, Elliott JA, Ferguson CA, Hanley ND, Hopkins DW, Maberly SC, Mearns KJ et al..  2009.  Strategies for monitoring and managing mass populations of toxic cyanobacteria in recreational waters: A multi-interdisciplinary approach. Environmental Health. 8 Supplement 1:-S11.
Hodgson JG, Sharafi M, Jalili A, Diaz S, Montserrat-Marti G, Palmer C, Cerabolini B, Pierce S, Hamzehee B, Asri Y et al..  2010.  Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
Bohan DA, Hawes C, Haughton AJ, Denholm I, Champion GT, Perry JN, Clark SJ.  2007.  Statistical models to evaluate invertebrate-plant trophic interactions in arable systems. Bulletin of Entomological Research. 97:265-280. Abstract
Nisbet AJ, Redmond DL, Matthews JB, Watkins C, Yaga R, Jones JT, Nath M, Knox DP.  2008.  Stage-specific gene expression in Teladorsagia circumcincta (Nematoda: Strongylida) infective larvae and early parasitic stages. International Journal for Parasitology. 38:829-838. Abstract
Rangel-Castro JI, Killham K, Ostle N, Nicol GW, Anderson IC, Scrimgeour CM, Ineson P, Meharg A, Prosser JI.  2005.  Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
Forbes GA, Chac MG, Kirk HG, Huarte MA, Van Damme M, Distel S, Mackay GR, Stewart HE, Lowe R, Duncan JM et al..  2005.  Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
Zhang X-S, Chase-Topping ME, McKendrick IJ, Savill NJ, Woolhouse MEJ.  2010.  Spread of E. coli O157 infection among Scottish cattle farms: Stochastic models and model selection. Epidemics. 2:11-20.
Hornyik C, Terzi LC, Simpson GG.  2010.  The Spen family protein FPA controls alternative cleavage and polyadenylation of RNA. Developmental Cell. 18:203-213.
Polechov J, Barton N, Marion G.  2009.  Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
Kasprowicz L, Malloch G, Pickup J, Fenton B.  2008.  Spatial and temporal dynamics of Myzus persicae clones in fields and suction traps. Agricultural and Forest Entomology. 10:91-100. Abstract
Begg GS, Cullen DW, Iannetta PPM, Squire GR.  2007.  Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots. Transgenic Research. 16:51-63. Abstract
White PJ, Hammond JP.  2009.  The sources of phosphorus in the waters of Great Britain. Journal of Environmental Quality. 38:13-26. Abstract
Hopkins DW, Waite IS, McNicol JW, Poulton PR, MacDonald AJ, O'Donnell AG.  2009.  Soil organic carbon contents in long-term experimental grassland plots in the UK (Palace Leas and Park Grass) have not changed consistently in recent decades. Global Change Biology. 15:1739-1754. Abstract
Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA.  2008.  Soil microbial respiration in arctic soil does not acclimate to temperature. Ecology Letters. 11:1092-1100. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Scrimgeour CM, Cortet J, Foggo A, Hackett CA, Krogh PH.  2006.  Soil microbial and faunal community responses to Bt maize and insecticide in two soils. Journal of Environmental Quality. 35:734-741. Abstract
Hassall M, Adl S, Berg M, Griffiths BS, Scheu S.  2006.  Soil fauna-microbe interactions: towards a conceptual framework for research. European Journal of Soil Biology. 42:S54-S60. Abstract
Stroud JL, Broadley MR, Foot I, Fairweather-Tait SJ, Hart DJ, Hurst R, Knott P, Mowat H, Norman K, Scott P et al..  2010.  Soil factors affecting selenium concentration in wheat grain and the fate and speciation of Se fertilisers applied to soil. Plant and Soil. 332:19-30.
McKenzie BM, K S, MacKenzie K, Peth S, Horn R.  2009.  Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.
Bingham IJ, Bengough AG, Rees RM.  2010.  Soil compaction - N interactions in barley: Root growth and tissue composition. Soil and Tillage Research. 106:241-246.
Spooner DM, McLean K, Ramsay G, Waugh R, Bryan GJ.  2005.  A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping. Proceedings of the National Academy of Sciences, USA. 102:14694-14699. Abstract
Jones MR, Raven JA, Leith ID, Cape JN, Smith RI, Fowler D.  2008.  Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology. 148:893-901. Abstract
Broadley MR, O'Lochlainn S, Hammond JP, Bowen HC, Cakmak I, Eker S, Erdem H, King GJ, White PJ.  2010.  Shoot zinc (Zn) concentration varies widely within Brassica oleracea L. and is affected by soil Zn and phosphorus (P) levels. Journal of Horticultural Science & Biotechnology. 85:375-380.
Hammond JP, Broadley MR, White PJ, King GJ, Bowen HC, Hayden R, Meacham MC, Mead A, Overs T, Spracklen WP et al..  2009.  Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.
Broadley MR, Hammond JP, King GJ, Astley D, Bowen HC, Meacham MC, Mead A, Pink DAC, Teakle G, Hayden R et al..  2008.  Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea. Plant Physiology. 146:1707-1720. Abstract
Broadley MR, Alcock J, Alford J, Cartwright P, Foot I, Fairweather-Tait SJ, Hart DJ, Hurst R, Knott P, McGrath SP et al..  2010.  Selenium biofortification of high-yielding winter wheat (Triticum aestivum L.) by liquid or granular Se fertilisation. Plant and Soil. 332:5-18.
Lewsey M, Robertson FC, Canto T, Palukaitis P, Carr JP.  2007.  Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein. Plant Journal. 50:240-252. Abstract
Armstrong MR, Husmeier D, Phillips MS, Blok VC.  2007.  Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida. Journal of Molecular Evolution. 64:689-701. Abstract
Bahar B, Schmidt O, Moloney AP, Scrimgeour CM, Begley IS, Monahan FJ.  2008.  Seasonal variation in the C, N and S stable isotope composition of retail organic and conventional Irish beef. Food Chemistry. 106:1299-1305. Abstract
Cock PJA, Fields CJ, Goto N, Heuer ML, Rice PM.  2010.  The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research. 38:1767-1771.
Poulsen M, Schroder M, Wilcks A, Kroghsbo S, Lindecrona RH, Miller A, Frenzel T, Danier J, Rychlik M, Shu QY et al..  2007.  Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
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de Dorlodot S, Forster BP, Pag L, Price AH, Tuberosa R, Draye X.  2007.  Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science. 12:474-481. Abstract
Bengough AG, Bransby MF, Hans J, McKenna SJ, Roberts TJ, Valentine TA.  2006.  Root responses to soil physical conditions; growth dynamics from field to cell. Journal of Experimental Botany. 57:437-447. Abstract
Gregory PJ, Bengough AG, Grinev DV, Schmidt S, Thomas WTB, Wojciechowski T, Young IM.  2009.  Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
Humphris SN, Bengough AG, Griffiths BS, Killham K, Rodger S, Stubbs V, Valentine TA, Young IM.  2005.  Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize. FEMS Microbiology Ecology. 54:123-130. Abstract
Lewsey M, Surette M, Robertson FC, Ziebell H, Choi SH, Ryu KH, Canto T, Palukaitis P, Payne T, Walsh JA et al..  2009.  The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant-Microbe Interactions. 22:642-654. Abstract
Ingram JSI, Gregory PJ, Izac AM.  2008.  The role of agronomic research in climate change and food security policy. Agriculture, Ecosystems and Environment. 126:4-12. Abstract
Wang MH, Hu XH, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo ZW.  2009.  Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Computational Biology. 5:-e1000317.
Nart P, Naylor SW, Huntley JF, McKendrick IJ, Gally DL, Low JC.  2008.  Responses of cattle to gastrointestinal colonization by Escherichia coli O157:H7. Infection and Immunity. 76:5366-5372. Abstract
Iglesias-Rodriguez MD, Buitenhuis ET, Raven JA, Schofield O, Poulton AJ, Gibbs S, Halloran PR, de Baar HJW.  2008.  Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
Hermans C, Hammond JP, Verbruggen N, White PJ.  2007.  Response to Andrews et al.: Correlations and causality. Trends in Plant Science. 12:532-533. Abstract
Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2010.  The response of organic matter mineralisation to nutrient and substrate additions in subarctic soils. Soil Biology & Biochemistry. 42:92-100.
Mickovski SB, Bransby MF, Bengough AG, Davies MCR, Hallett PD.  2010.  Resistance of simple plant root systems to uplift loads. Canadian Geotechnical Journal. 47:78-95. Abstract
Thorsen MK, Hopkins DW, Woodward S, McKenzie BM.  2010.  Resilience of microorganisms and aggregation of a sandy calcareous soil to amendment with organic and synthetic fertilizer. Soil Use and Management. 26:149-157.
Lees AK, Brierley JL, Stewart JA, Hilton AJ, Wale SJ, Gladders P, Bradshaw NJ, Peters JC.  2010.  Relative importance of seed-tuber and soilborne inoculum in causing black dot disease of potato. Plant Pathology. 59:693-702.
White PJ, Bradshaw JE, Dale MFB, Ramsay G, Hammond JP, Broadley MR.  2009.  Relationships between yield and mineral concentrations in potato tubers. Hortscience. 44:6-11. Abstract
Singh BK, Nunan N, Ridgway KP, McNicol JW, Young JPW, Daniell TJ, Prosser JI, Millard P.  2008.  Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10:534-541. Abstract
Simpson CG, Manthri S, Raczynska KD, Kalyna M, Lewandowska D, Kusenda B, Maronova M, Szweykowska-Kulinska Z, Jarmolowski A, Barta A et al..  2010.  Regulation of plant gene expression by alternative splicing. Biochemical Society Transactions. 38:667-671.
Beale CM, Lennon JJ, Yearsley JM, Brewer MJ, Elston DA.  2010.  Regression analysis of spatial data. Ecology Letters. 13:246-264.
Gooding MJ, Gregory PJ, Ford KE, Ruske RE.  2007.  Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
Oliva R, Win J, Raffaele S, Boutemy L, Bozkurt TO, Chaparro-Garcia A, Segretin ME, Stam R, Schornack S, Cano LM et al..  2010.  Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.
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Liu H, Coulthurst SJ, Pritchard L, Hedley PE, Ravensdale M, Humphris SN, Burr T, Takle GW, Brurberg MB, Birch PRJ et al..  2008.  Quorum sensing coordinates brute force and stealth modes of infection in the plant pathogen Pectobacterium atrosepticum. PLoS Pathogens. 4:-e1000093. Abstract
Barnett CM, Bengough AG, McKenzie BM.  2009.  Quantitative image analysis of earthworm-mediated soil displacement. Biology and Fertility of Soils. 45:821-828.
Moran D, McVittie A, Allcroft DJ, Elston DA.  2007.  Quantifying public preferences for agri-environmental policy in Scotland: a comparison on methods. Ecological Economics. 63:42-53. Abstract
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Rotariu O, Smith-Palmer A, Cowden J, Bessell PR, Innocent GT, Reid SWJ, Matthews L, Dallas J, Ogden ID, Forbes KJ et al..  2010.  Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
Gill CIR, McDougall GJ, Glidewell SM, Stewart D, Shen Q, Tuohy K, Dobbin A, Boyd A, Brown E, Haldar S et al..  2010.  Profiling of phenols in human faecal water after raspberry supplementation. Journal of Agricultural and Food Chemistry. 58:10389-10395.
Laurenson K, McKendrick IJ, Reid HW, Challenor R, Mathewson GK.  2007.  Prevalence, spatial distribution and the effect of control measures on louping-ill virus in the Forest of Bowland, Lancashire. Epidemiology and Infection. 135:963-973. Abstract
Hotchkiss EJ, Dagleish MP, Willoughby K, McKendirck IJ, Finlayson J, Zadoks RN, Newsome E, Brulisauer F, Gunn GJ, Hodgson JC.  2010.  Prevalence of Pasteurella multocida and other respiratory pathogens in the nasal tract of Scottish calves. Veterinary Record. 167:555-560.
Brulisauer F, Lewis FI, Ganser AG, McKendrick IJ, Gunn GJ.  2010.  The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
Agu RC, Swanston JS, Walker JW, Pearson SY, Bringhurst TA, Brosnan JM, Jack FR.  2009.  Predicting alcohol yield from UK soft winter wheat for grain distilling: combined influence of hardness and nitrogen measurements. Journal of the Institute of Brewing. 115:183-190.
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2009.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
Carfrae JA, Sheppard LJ, Raven JA, Leith ID, Crossley A.  2007.  Potassium and phosphorus additions modify the response of Sphagnum capillifolium growing on a Scottish ombrotrophic bog to enhanced nitrogen deposition. Applied Geochemistry. 22:1111-1121. Abstract
Grouffaud S, van West P, Avrova AO, Birch PRJ, Whisson SC.  2008.  Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans. Microbiology. 154:3743-3751. Abstract
Loades KW, Bengough AG, Bransby MF, Hallett PD.  2010.  Planting density influence on fibrous root reinforcement of soils. Ecological Engineering. 36:276-284. Abstract
Palukaitis P, Carr JP.  2008.  Plant resistance responses to viruses. Journal of Plant Pathology. 90:153-171.
Bengough AG, Hans J, Bransby MF, Valentine TA.  2010.  PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract
Saari SK, Campbell CD, Russell JR, Alexander IJ, Anderson IC.  2005.  Pine microsatellite markers allow roots and ectomycorrhizas to be linked to individual trees. New Phytologist. 165:295-304. Abstract
Finkel ZV, Beardall J, Flynn KJ, Quigg A, Rees TAV, Raven JA.  2010.  Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
Bos JIB, Armstrong MR, Gilroy EM, Boevink P, Hein I, Taylor RM, Tian ZD, Engelhardt S, Vetukuri RR, Harrower BE et al..  2010.  Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.
Dick MA, Dobbie K, Cooke DEL, Brasier CM.  2006.  Phytophthora captiosa sp. nov and Phytophthora fallax sp. nov causing crown dieback of Eucalyptus in New Zealand. Mycological Research. 110:393-404. Abstract
Giordano M, Norici A, Gilmour DJ, Raven JA.  2007.  Physiological responses of the green alga Dunaliella parva (Volvocales, Chlorophyta) to controlled incremental changes in the N source. Functional Plant Biology. 34:925-934. Abstract
Berry P, Spink J, Foulkes J, White PJ.  2010.  The physiological basis of genotypic differences in nitrogen use efficiency in oilseed rape (Brassica napus L.). Field Crops Research. 119:365-373.
Gregory AS, Watts CW, Whalley WR, Kuan HL, Griffiths BS, Hallett PD, Whitmore AP.  2007.  Physical resilience of soil to field compaction and the interactions with plant growth and microbial community structure. European Journal of Soil Science. 58:1221-1232. Abstract
Chapman SN, Faulkner C, Kaiserli E, Garcia-Mata C, Savenkov EI, Roberts AG, Oparka KJ, Christie JM.  2008.  The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection. Proceedings of the National Academy of Sciences, USA. 105:20038-20043. Abstract
Wang J, Zhang X, Bengough AG, Crawford JW.  2008.  Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation. International Journal of Numerical Methods for Heat & Fluid Flow. 18:656-672. Abstract
Stamati K, Hollingsworth PM, Russell JR.  2007.  Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
Newton AC, Fitt BDL, Atkins SD, Walters DR, Daniell TJ.  2010.  Pathogenesis, parasitism and mutualism in the trophic space of microbe-plant interactions. Trends in Microbiology. 18:365-373.
Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2009.  A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract
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Cockell CS, Raven JA.  2007.  Ozone and life on the Archaean earth. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1889-1901. Abstract
Torrance L, Ziegler A, Pittman H, Paterson M, Toth R, Eggleston I.  2006.  Oriented immobilisation of engineered single-chain antibodies to develop biosensors for virus detection. Journal of Virological Methods. 134:164-170. Abstract
Graham NS, Broadley MR, Hammond JP, White PJ, May ST.  2007.  Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics. 8:-344. Abstract
Stark LA, Taliansky ME.  2008.  Old and new faces of the nucleolus. Workshop on the nucleolus and disease. EMBO Reports. 10:35-40. Abstract
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Baccini M, Bachmaier EM, Biggeri A, Boekschoten MV, Bouwman FG, Brennan L, Caesar R, Cinti S, Coort SL, Crosley K et al..  2008.  The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
Haupt S, Stroganova T, Ryabov E, Kim S-H, Fraser G, Duncan G, Mayo M, Barker H, Taliansky ME.  2005.  Nucleolar localisation of Potato leafroll virus capsid proteins. Journal of General Virology. 86:2891-2896. Abstract
Pemberton CL, Whitehead NA, Sebaihia M, Bell KS, Hyman LJ, Harris SJ, Matlin AJ, Robson ND, Birch PRJ, Carr JP et al..  2005.  Novel quorum sensing-controlled genes in Erwinia carotovora subsp. carotovora: identification of a fungal elicitor homologue in a soft-rotting bacterium. Molecular Plant-Microbe Interactions. 18:343-353. Abstract
Avrova AO, Boevink P, Young V, Grenville-Briggs LJ, van West P, Birch PRJ, Whisson SC.  2008.  A novel Phytophthora infestans haustorium-specific membrane protein is requred for infection of potato. Cellular Microbiology. 10:2271-2284. Abstract
Johnson SN, Crawford JW, Gregory PJ, Grinev DV, Mankin RW, Masters GJ, Murray PJ, Wall DH, Zhang X.  2007.  Non-invasive techniques for investigating and modelling root-feeding insects in managed and natural systems. Agricultural and Forest Entomology. 9:39-46.
Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al..  2009.  Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
Dos Reis J FB, Simon MF, Gross E, Boddey RM, Elliott GN, Neto NE, Loureiro MdeF, de Queiroz LP, Scotti MR, Chen W-M et al..  2010.  Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA.  2009.  No evidence for compensatory thermal adaptation of soil microbial respiration in the study of Bradford et al. (2008). Ecology Letters. 12:E12-E14.
Andrews M, Lea PJ, Raven JA, Azevedo RA.  2009.  Nitrogen use efficiency. 3. Nitrogen fixation: genes and costs. Annals of Applied Biology. 155:1-13.
Chapman S, Oparka KJ, Roberts AG.  2005.  New tools for in vivo fluorescence tagging. Current Opinion in Plant Biology. 8:565-573. Abstract
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Blower TR, Fineran PC, Johnson MJ, Toth IK, Humphreys DP, Salmond GPC.  2009.  Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
Clayton SJ, Clegg CD, Bristow AW, Gregory PJ, Headon DM, Murray PJ.  2010.  Movement of newly assimilated 13C carbon in the grass Lolium perenne and its incorporation into rhizosphere microbial DNA. Rapid Communications in Mass Spectrometry. 24:535-540.
Sharma SK, Millam S, Hedley PE, McNicol JW, Bryan GJ.  2008.  Molecular regulation of somatic embryogenesis in potato: an auxin led perspective. Plant Molecular Biology. 68:185-201. Abstract
Rae SJ, Macaulay M, Ramsay L, Leigh F, Matthews D, O'Sullivan DM, Donini P, Morris PC, Powell W, Marshall DF et al..  2007.  Molecular barley breeding. Euphytica. 158:295-303. Abstract
Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al..  2005.  Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
Begg GS, Hockaday S, McNicol JW, Askew M, Squire GR.  2006.  Modelling the persistence of volunteer oilseed rape (Brassica napus). Ecological Modelling. 198:195-207. Abstract
Grzegorczyk M, Husmeier D, Edwards KD, Ghazal P, Millar AJ.  2008.  Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract
Preedy K, Schofield PG, Liu S, Matzavinos A, Chaplain MAJ, Hubbard SF.  2010.  Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.
Butler A, Doherty RM, Marion G.  2009.  Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
Castillo NRF, Reed BM, Graham J, Fern F, Bassil NV.  2010.  Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.
Vinten AJA, Potts JM, Avery L, Strachan NJC.  2009.  Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3:744-752.
H C, English LC, Halpin C, Andreux F, Hopkins DW.  2006.  Microbial community structure in soils with decomposing residues from plants with genetic modifications to lignin biosynthesis. FEMS Microbiology Letters. 263:68-75. Abstract
Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.  2008.  Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract
Whisson SC, Avrova AO, van West P, Jones JT.  2005.  A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans. Molecular Plant Pathology. 6:153-163. Abstract
Shepherd LVT, Alexander CA, Sungurtas J, McNicol JW, Stewart D, Davies HV.  2010.  Metabolomic analysis of the potato tuber life cycle. Metabolomics. 6:274-291.
Mickovski SB, Hallett PD, Bransby MF, Davies MCR, Sonnenberg R, Bengough AG.  2009.  Mechanical reinforcement of soil by willow roots: impacts of root properties and root failure mechanism. Soil Science Society of America Journal. 73:1276-1285. Abstract
Dixon ER, Blackwell MSA, Dhanoa MS, Berryman Z, de la Fuente Martinez N, Junquera D, Martinez A, Murray PJ, Kemp HF, Meier-Augenstein W et al..  2010.  Measurement at the field scale of soil . Rapid Communications in Mass Spectrometry. 24:511-518.
Rhind SM, Kyle CE, Mackie C, McDonald L, Zhang Z, Duff EI, Bellingham M, Amezaga MR, Mandon-Pepin B, Loup B et al..  2010.  Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
Mickovski SB, Bengough AG, Bransby MF, Davies MCR, Hallett PD, Sonnenberg R.  2007.  Material stiffness, branching pattern, and soil water matric potential affect the pullout resistance of model root systems. European Journal of Soil Science. 58:1471-1481. Abstract
Zhang X, Crawford JW, Deeks LK, Stutter MI, Bengough AG, Young IM.  2005.  A mass balance based numerical method for the fractional advection-dispersion equation: Theory and application. Water Resources Research. 41:-W07029. Abstract
Comadran J, Russell JR, van Eeuwijk FA, Ceccarelli S, Grando S, Baum M, Stanca AM, Pecchioni N, Mastrangelo AM, Akar T et al..  2008.  Mapping adaptation of barley to droughted environments. Euphytica. 161:35-45. Abstract
Blum M, Boehler M, Randall E, Young V, Csukai M, Kraus S, Moulin F, Scalliet G, Avrova AO, Whisson SC et al..  2010.  Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.
Newton AC, Gravouil C, Fountaine JM.  2010.  Managing the ecology of foliar pathogens: ecological tolerance in crops (Review). Annals of Applied Biology. 157:343-359.
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Baggaley NJ, Langan SJ, Futter MN, Potts JM, Dunn SM.  2009.  Long-term trends in hydro-climatology of a major Scottish mountain river. Science of the Total Environment. 407:4633-4641.
Latijnhouwers M, Gillespie T, Boevink P, Hawes C, Carvalho C.  2007.  Localisation and domain characterisation of Arabidopsis Golgin Candidates. Journal of Experimental Botany. 58:4373-4386. Abstract
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Livestock grazing behavior and inter- versus intraspecific disease risk via the fecal-oral route. Behavioral Ecology. 20:426-432.
Nunan N, Daniell TJ, Singh BK, Papert A, McNicol JW, Prosser JI.  2005.  Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques. Applied and Environmental Microbiology. 71:6784-6792. Abstract
Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ.  2009.  Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
Bishop HO, Grieve IC, Chudek JA, Hopkins DW.  2008.  Liming upland grassland: The effects on earthworm communities and the chemical characteristics of carbon in casts. European Journal of Soil Science. 59:526-531. Abstract
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Hopkins DW, Sparrow AD, Gregorich EG, Elberling B, Novis P, Fraser F, Scrimgeour CM, Dennis PG, Meier-Augenstein W, Greenfield LG.  2009.  Isotopic evidence for the provenance and turnover of organic carbon by soil microorganisms in the Antarctic dry valleys. Environmental Microbiology. 11:597-608. Abstract
Lyons M, Cardle L, Rostoks N, Waugh R, Flavell AJ.  2008.  Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome. Molecular Genetics and Genomics. 280:275-285. Abstract
Mitchell RJ, Hester AJ, Campbell CD, Chapman SJ, Cameron CM, Hewison RL, Potts JM.  2010.  Is vegetation composition or soil chemistry the best predictor of the soil microbe community? Plant and Soil. 333:417-430.
Flynn KJ, Raven JA, Rees TAV, Finkel ZV, Quigg A, Beardall J.  2010.  Is the growth rate hypothesis applicable to microalgae? Journal of Phycology. 46:1-12.
Mahajan A, Currie CG, Mackie S, Tree J, McAteer S, McKendrick I, McNeilly TN, Roe A, La Ragione RM, Woodward MJ et al..  2009.  An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157:H7 with bovine intestinal epithelium. Cellular Microbiology. 11:121-137.
Almoosawi S, McDougall GJ, Fyfe L, Al-Dujaili EAS.  2010.  Investigating the inhibitory activity of green coffee and cacao bean extract on pancreatic lipase. Nutrition Bulletin. 35:207-212.
Abdullahi YA, Akunna JC, White NA, Hallett PD, Wheatley RE.  2008.  Investigating the effects of anaerobic and aerobic post-treatment on quality and stability of organic fraction of municipal solid waste as soil amendment. Bioresource Technology. 99:8631-8636. Abstract
Baxter EM, Jarvis S, D'Eath RB, Ross DW, Robson SK, Farish M, Nevison IM, Lawrence AB, Edwards SA.  2008.  Investigating the behavioural and physiological indicators of neonatal survival in pigs. Theriogenology. 69:773-783. Abstract
Brooks DR, Clark SJ, Perry JN, Bohan DA, Champion GT, Firbank LG, Haughton AJ, Hawes C, Heard MS, Woiwod IP.  2005.  Invertebrate biodiversity in maize following withdrawal of triazine herbicides. Proceedings of the Royal Society of London, Series B. 272:1497-1502. Abstract
Faisal A, Dondelinger F, Husmeier D, Beale CM.  2010.  Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
Kim S-H, MacFarlane SA, Kalinina NO, Rakitina DV, Ryabov E, Gillespie T, Haupt S, Brown JWS, Taliansky ME.  2007.  Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.
Kerenyi Z, Merai Z, Hiripi L, Benkovics A, Gyula P, Lacomme C, Barta E, Nagy F, Silhavy D.  2008.  Inter-kingdom conservation of mechanism of nonense-mediated mRNA decay. EMBO Journal. 27:1585-1595.
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Inter- and intra-specific exposure to parasites and pathogens via the faecal-oral route: a consequence of behaviour in a patchy environment. Epidemiology and Infection. 137:630-643.
Griffiths BS, Ball BC, Daniell TJ, Hallett PD, Neilson R, Wheatley RE, Osler G, Bohanec M.  2010.  Integrating soil quality changes to arable agricultural systems following organic matter addition, or adoption of a ley-arable rotation. Applied Soil Ecology. 46:43-53.
Van Toor RF, Foster SP, Anstead JA, Mitchinson S, Fenton B, Kasprowicz L.  2008.  Insecticide resistance and genetic composition of Myzus persicae (Hemiptera:Aphididae) on field potatoes in New Zealand. Crop Protection. 27:236-247. Abstract
Clark EL, Karley AJ, Hubbard SF.  2010.  Insect endosymbionts: manipulators of insect herbivore trophic interactions? Protoplasma. 244:25-51.
Kevekordes K, Holland D, H N, Jenkins S, Kos R, Roberts S, Raven JA, Scrimgeour CM, Shelly K, Stojkovic S et al..  2006.  Inorganic carbon acquisition by eight species of Caulerpa (Caulerpaceae, Chlorophyta). Phycologia. 45:442-449. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.