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2010
Hawes C, Squire GR, Hallett PD, Watson CA, Young MW.  2010.  Arable plant communities as indicators of farming practice. Agriculture, Ecosystems and Environment. 138:17-26.
Johnson SN, Hallett PD, Gillespie TL, Halpin C.  2010.  Below-ground herbivory and root toughness: a potential model system using lignin-modified tobacco. Physiological Entomology. 35:186-191. Abstract
Love CG, Graham NS, O'Lochlainn S, Bowen HC, May ST, White PJ, Broadley MR, Hammond JP, King GJ.  2010.  A Brassica exon array for whole-transcript gene expression profiling. PLoS One. 5:-e12812.
Feng X, Simpson AJ, Gregorich EG, Elberling B, Hopkins DW, Sparrow AD, Novis PM, Greenfield LG, Simpson MJ.  2010.  Chemical characterization of microbial-dominated soil organic matter in the Garwood Valley, Antarctica. Geochimica et Cosmochimica Acta. 74:6485-6498.
Mitchell C, Johnson SN, Gordon SC, Birch ANE, Hubbard SF.  2010.  Combining plant resistance and a natural enemy to control Amphorophora idaei. BioControl. 55:321-327.
Chen XY, Daniell TJ, Neilson R, O'Flaherty V, Griffiths BS.  2010.  A comparison of molecular methods for monitoring soil nematodes and their use as biological indicators. European Journal of Soil Science. 46:319-324.
Smith P, Gregory PJ, van Vuuren D, Obersteiner M, Havlik P, Rounsevell M, Woods J, Stehfest E, Bellarby J.  2010.  Competition for land. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 365:2941-2957.
Dupuy L, MacKenzie J, Haseloff J.  2010.  Coordination of plant cell division and expansion in a simple morphogenetic system. Proceedings of the National Academy of Sciences, USA. 107:2711-2716.
Bartlett MD, Briones MJI, Neilson R, Schmidt O, Spurgeon D, Creamer RE.  2010.  A critical review of current methods in earthworm ecology: From individuals to populations (Review). European Journal of Soil Biology. 46:67-73.
Garrido E, Bennett AE, Fornoni J, Strauss SY.  2010.  The dark side of the mycorrhiza. Plant Signaling & Behavior. 5:1019-1021.
Bagavathiannan MV, Gulden RH, Begg GS, Van Acker RC.  2010.  The demography of feral alfalfa (Medicago sativa L.) populations occurring in road side habitats in southern Manitoba Canada: Implications for novel trait confinement. Environmental Science and Pollution Research. 17:1448-1459.
Zhang K, Burns IG, Greenwood DJ, Hammond JP, White PJ.  2010.  Developing a reliable strategy to infer the effective soil hydraulic properties from field evaporation experiments for agro-hydrological models. Agricultural Water Management. 97:399-409.
Zhang B, Deng H, Wang HL, Yin R, Hallett PD, Griffiths BS, Daniell TJ.  2010.  Does microbial habitat or community structure drive the functional stability of microbes to stresses following re-vegetation of a severely degraded soil? Soil Biology and Biochemistry. 42:850-859.
Dupuy L, Vignes M, McKenzie BM, White PJ.  2010.  The dynamics of root meristem distribution in the soil. Plant Cell and Environment. 33:358-369.
Broadley MR, White PJ.  2010.  Eats roots and leaves. Can edible horticultural crops address dietary calcium, magnesium and potassium deficiencies? Proceedings of the Nutrition Society. 69:601-612.
Johnson SN, Gregory PJ, McNicol JW, Oodally Y, Zhang XX, Murray PJ.  2010.  Effects of soil conditions and drought on egg hatching and larval survival of the clover root weevil (Sitona lepidus). Applied Soil Ecology. 44:75-79.
Broadley MR, Hammond JP, White PJ, Salt DE.  2010.  An efficient procedure for normalising ionomics data for Arabidopsis thaliana. New Phytologist. 186:270-274.
Johnson SN, McNicol JW.  2010.  Elevated CO2 and aboveground-belowground herbivory by the clover root weevil. Oecologia. 162:209-216.
Nielson UN, Osler GHR, Campbell CD, Neilson R, Burslem DFRP, van der Wal R.  2010.  The enigma of soil animal species diversity revisited: the role of small-scale heterogeneity. PLoS One. 5:-e11567.
Roberts TJ, McKenna SJ, Du CJ, Wuyts N, Valentine TA, Bengough AG.  2010.  Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images. Machine Vision and Applications. 21:921-939.
White PJ, Hammond JP, King GJ, Bowen HC, Hayden RM, Meacham MC, Spracklen WP, Broadley MR.  2010.  Genetic analysis of potassium use efficiency in Brassica oleracea. Annals of Botany. 105:1199-1210.
Stroud JL, Li HF, Lopez-Bellido FJ, Broadley MR, Foot I, Fairweather-Tait SJ, Hart DJ, Hurst R, Knott P, Mowat H et al..  2010.  Impact of sulphur fertilisation on crop response to selenium fertilisation. Plant and Soil. 332:31-40.
Clark EL, Karley AJ, Hubbard SF.  2010.  Insect endosymbionts: manipulators of insect herbivore trophic interactions? Protoplasma. 244:25-51.
Griffiths BS, Ball BC, Daniell TJ, Hallett PD, Neilson R, Wheatley RE, Osler G, Bohanec M.  2010.  Integrating soil quality changes to arable agricultural systems following organic matter addition, or adoption of a ley-arable rotation. Applied Soil Ecology. 46:43-53.
Flynn KJ, Raven JA, Rees TAV, Finkel ZV, Quigg A, Beardall J.  2010.  Is the growth rate hypothesis applicable to microalgae? Journal of Phycology. 46:1-12.
Deng H, Zhang B, Yin R, Wang HL, Mitchell SM, Griffiths BS, Daniell TJ.  2010.  Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.
Clayton SJ, Clegg CD, Bristow AW, Gregory PJ, Headon DM, Murray PJ.  2010.  Movement of newly assimilated 13C carbon in the grass Lolium perenne and its incorporation into rhizosphere microbial DNA. Rapid Communications in Mass Spectrometry. 24:535-540.
Duarte IM, De Almeida MTM, Brown DJF, Marques I, Neilson R, Decraemer W.  2010.  Phylogenetic relationships, based on SSU rDNA sequences, among the didelphic genera of the family Trichodoridae from Portugal. Nematology. 12:171-180.
Berry P, Spink J, Foulkes J, White PJ.  2010.  The physiological basis of genotypic differences in nitrogen use efficiency in oilseed rape (Brassica napus L.). Field Crops Research. 119:365-373.
Bengough AG, Hans J, Bransby MF, Valentine TA.  2010.  PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract
White PJ, Brown PH.  2010.  Plant nutrition for sustainable development and global health. Annals of Botany. 105:1073-1080.
Hinojosa MB, Carreira JA, Garc R, Rodr JM, Daniell TJ, Griffiths BS.  2010.  Plant treatment, pollutant load and soil type effects in the rhizosphere ecology of trace element polluted soils. Ecotoxicology and Environmental Safety. 73:970-981. Abstract
Lankau RA, Wheeler E, Bennett AE, Strauss SY.  2010.  Plant-soil feedbacks contribute to an intransitive competitive network that promotes both genetic and species diversity. Journal of Ecology. 99:176-185.
Loades KW, Bengough AG, Bransby MF, Hallett PD.  2010.  Planting density influence on fibrous root reinforcement of soils. Ecological Engineering. 36:276-284. Abstract
Johnson SN, Petitjean S, Clark KE, Mitchell C.  2010.  Protected raspberry production accelerates onset of oviposition by vine weevils (Otiorhynchus sulcatus). Agricultural and Forest Entomology. 12:277-283.
Vollsnes A, Futsaether CM, Bengough AG.  2010.  Quantifying rhizosphere particle movement around mutant maize roots using time-lapse imaging and particle image velocimetry. European Journal of Soil Science. 61:926-939.
Thorsen MK, Hopkins DW, Woodward S, McKenzie BM.  2010.  Resilience of microorganisms and aggregation of a sandy calcareous soil to amendment with organic and synthetic fertilizer. Soil Use and Management. 26:149-157.
Mickovski SB, Bransby MF, Bengough AG, Davies MCR, Hallett PD.  2010.  Resistance of simple plant root systems to uplift loads. Canadian Geotechnical Journal. 47:78-95. Abstract
Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2010.  The response of organic matter mineralisation to nutrient and substrate additions in subarctic soils. Soil Biology & Biochemistry. 42:92-100.
Dupuy L, Gregory PJ, Bengough AG.  2010.  Root growth models: Towards a new generation of continuous approaches. Journal of Experimental Botany. 61:2131-2143.
Broadley MR, Alcock J, Alford J, Cartwright P, Foot I, Fairweather-Tait SJ, Hart DJ, Hurst R, Knott P, McGrath SP et al..  2010.  Selenium biofortification of high-yielding winter wheat (Triticum aestivum L.) by liquid or granular Se fertilisation. Plant and Soil. 332:5-18.
Broadley MR, O'Lochlainn S, Hammond JP, Bowen HC, Cakmak I, Eker S, Erdem H, King GJ, White PJ.  2010.  Shoot zinc (Zn) concentration varies widely within Brassica oleracea L. and is affected by soil Zn and phosphorus (P) levels. Journal of Horticultural Science & Biotechnology. 85:375-380.
Bingham IJ, Bengough AG, Rees RM.  2010.  Soil compaction - N interactions in barley: Root growth and tissue composition. Soil and Tillage Research. 106:241-246.
Stroud JL, Broadley MR, Foot I, Fairweather-Tait SJ, Hart DJ, Hurst R, Knott P, Mowat H, Norman K, Scott P et al..  2010.  Soil factors affecting selenium concentration in wheat grain and the fate and speciation of Se fertilisers applied to soil. Plant and Soil. 332:19-30.
Iannetta PPM, Begg GS, Valentine TA, Wishart J.  2010.  Sustainable disease control using weeds as indicators: Capsella bursa pastoris and Tobacco Rattle Virus. Weed Research. 50:511-514.
Zhang K, Greenwood DJ, Spracklen WP, Rahn CR, Hammond JP, White PJ, Burns IG.  2010.  A universal agro-hydrological model for water and nitrogen cycles in the soil-crop system SMCR_N: Critical update and further validation. Agricultural Water Management. 97:1411-1422.
Lichner L, Hallett PD, Orfanus T, Czachor H, Rajkai K, Sir M, Tesai M.  2010.  Vegetation impact on the hydrology of an aeolian sandy soil in a continental climate. Ecohydrology. 3:413-420.
2009
Bowen SR, Gregorich EG, Hopkins DW.  2009.  Biochemical properties and biodegradation of dissolved organic matter from soils. Biology and Fertility of Soils. 45:733-742. Abstract
Woodward FI, Bardgett RD, Raven JA, Hetherington AM.  2009.  Biological approaches to global environmental change: mitigation and remediation. Current Biology. 19:R615-R623.
Subbarao GV, Kishii M, Nakahara K, Ishikawa T, Ban T, Tsujimoto H, George TS, Berry WL, Hash CT, Ito O.  2009.  Biological nitrification inhibition (BNI) - Is there potential for genetic interventions in Triticeae? Breeding Science. 59:529-545.
Hillier J, Hawes C, Squire GR, Hilton A, Wale S, Smith P.  2009.  The carbon footprints of food crop production. International Journal of Agicultural Sustainability. 7:107-118.
Hudacsek P, Bransby MF, Hallett PD, Bengough AG.  2009.  Centrifuge modelling of climatic effects on clay embankments. Proceedings of the Institution of Civil Engineers - Engineering Sustainability. 162:91-100.
Koza A, Hallett PD, Moon CD, Spiers AJ.  2009.  Characterisation of a novel air-liquid interface biofilm of Pseudomonas fluorescens SBW25. Microbiology. 155:1397-1406.
Cockell CS, Kaltenegger L, Raven JA.  2009.  Cryptic photosynthesis - extrasolar planetary oxygen without a surface biological signature. Astrobiology. 9:623-636.
Squire GR, Hawes C, Begg GS, Young MW.  2009.  Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract
McKenzie BM, Bengough AG, Hallett PD, Thomas WTB, Forster BP, McNicol JW.  2009.  Deep rooting and drought screening of cereal crops: A novel field-based method and its application.. Field Crops Research. 112:165-171. Abstract
Stokes A, Atger C, Bengough AG, Fourcaud T, Sidle RC.  2009.  Desirable plant root traits for protecting natural and engineered slopes against landslides (Invited review). Plant and Soil. 324:1-30.
Uibopuu A, Moora M, Saks U, Daniell TJ, Zobel M, Opik M.  2009.  Differential effect of arbuscular mycorrhizal fungal communities from ecosystems along management gradient on the growth of forest understorey plant species. Soil Biology & Biochemistry. 41:2141-2146.
Hallett PD, Feeney D, Bengough AG, Rillig MC, Scrimgeour CM, Young IM.  2009.  Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract
Barr P, McKenzie BM, Hallett PD.  2009.  Earthworms bring compacted and loose soils to a similar mechanical state. Soil Biology & Biochemistry. 41:656-658. Abstract
Yang D, Zhang T, Zhang K, Greenwood DJ, Hammond JP, White PJ.  2009.  An easily implemented agro-hydrological procedure with dynamic root simulation for water transfer in the crop-soil system: Validation and application. Journal of Hydrology. 370:177-190. Abstract
Wookey PA, Aerts R, Bardgett RD, Baptist F, Brathan KA, Cornelissen JHC, Gough L, Hartley IP, Hopkins DW, Lavorerl S et al..  2009.  Ecosystem feedbacks and cascade processes: understanding their role in the responses of Arctic and alpine ecosystems to environmental change. Global Change Biology. 15:1153-1172. Abstract
Pawlett M, Hopkins DW, Moffett BF, Harris JA.  2009.  The effect of earthworms and liming on soil microbial communities. Biology and Fertility of Soils. 45:361-369. Abstract
Gregory AS, Watts CW, Griffiths BS, Hallett PD, Kuan HL, Whitmore AP.  2009.  The effect of long-term soil management on the physical and biological resilience of a range of arable and grassland soils in England. Geoderma. 153:172-185.
Ashman MR, Hallett PD, Brookes PC, Allen J.  2009.  Evaluating soil stabilisation by biological processes using step-wise aggregate fractionation. Soil and Tillage Research. 102:209-215.
Hawes C, Haughton AJ, Bohan DA, Squire GR.  2009.  Functional approaches for assessing plant and invertebrate abundance patterns in arable systems. Basic and Applied Ecology. 10:34-42. Abstract
Dimier C, Brunet C, Geider RD, Raven JA.  2009.  Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnology and Oceanography. 54:823-836.
Raven JA.  2009.  Horsetails get the wind up. New Phytologist. 184:6-9.
Caron-Lormier G, Bohan DA, Hawes C, Raybould A, Haughton AJ, Humphry RW.  2009.  How might we model an ecosystem? Ecological Modelling. 220:1935-1949.
Gregory PJ, Johnson SN, Newton AC, Ingram JSI.  2009.  Integrating pests and pathogens into the climate change/food security debate. Journal of Experimental Botany. 60:2827-2838. Abstract
Hopkins DW, Sparrow AD, Gregorich EG, Elberling B, Novis P, Fraser F, Scrimgeour CM, Dennis PG, Meier-Augenstein W, Greenfield LG.  2009.  Isotopic evidence for the provenance and turnover of organic carbon by soil microorganisms in the Antarctic dry valleys. Environmental Microbiology. 11:597-608. Abstract
Opik M, Metsis M, Daniell TJ, Zobel M, Moora M.  2009.  Large-scale parallel 454 sequencing reveals host ecological group specificity of arbuscular mycorrhizal fungi in a boreonemoral forest. New Phytologist. 184:424-437.
Torres-Ca P, Hinojosa MB, Garcia-Ruiz R, Daniell TJ, Carreira JA.  2009.  Linking biogeochemical variability and microbial community structure in forest soils: Abies pinsapo-fir forests as a study case. Ecosistemas. 18:91-102.
Braga RA, Dupuy L, Pasqual M, Cardoso RR.  2009.  Live biospeckle laser imaging of root tissues. European Biophysics Journal. 38:679-686. Abstract
Mickovski SB, Hallett PD, Bransby MF, Davies MCR, Sonnenberg R, Bengough AG.  2009.  Mechanical reinforcement of soil by willow roots: impacts of root properties and root failure mechanism. Soil Science Society of America Journal. 73:1276-1285. Abstract
Karley AJ, White PJ.  2009.  Moving cationic minerals to edible tissues: potassium, magnesium, calcium (Review). Current Opinion in Plant Biology. 12:291-298. Abstract
Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA.  2009.  No evidence for compensatory thermal adaptation of soil microbial respiration in the study of Bradford et al. (2008). Ecology Letters. 12:E12-E14.
Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2009.  A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract
Richardson AE, Hocking PJ, Simpson RJ, George TS.  2009.  Plant mechanisms to optimise access to soil phosphorus. Crop and Pasture Science. 60:124-143.
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2009.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
Barnett CM, Bengough AG, McKenzie BM.  2009.  Quantitative image analysis of earthworm-mediated soil displacement. Biology and Fertility of Soils. 45:821-828.
White PJ, Bradshaw JE, Dale MFB, Ramsay G, Hammond JP, Broadley MR.  2009.  Relationships between yield and mineral concentrations in potato tubers. Hortscience. 44:6-11. Abstract
Barr P, Hallett PD.  2009.  Rheological stabilisation of wet soils by model root and fungal exudates depends on clay mineralogy. European Journal of Soil Science. 60:525-538. Abstract
Hinsinger P, Bengough AG, Vetterlein D, Young IM.  2009.  Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.
Ma'shum M, Tisdall JM, Borrell AK, McKenzie BM, Gill JS, Kusnarta IGM, Sukartono M, Van Cooten DE.  2009.  Rice responses to soil management in rice-based cropping system in the semi-arid tropics of southern Lombok, Eastern Indonesia. Field Crops Research. 110:197-206. Abstract
Gregory PJ, Bengough AG, Grinev DV, Schmidt S, Thomas WTB, Wojciechowski T, Young IM.  2009.  Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
Andrews M, Maule HG, Hodge S, Cherrill A, Raven JA.  2009.  Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.
Hammond JP, Broadley MR, White PJ, King GJ, Bowen HC, Hayden R, Meacham MC, Mead A, Overs T, Spracklen WP et al..  2009.  Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.
Maestre FT, Bowker M, Puche MD, Bowker M, Hinojosa MB, Mart I, Garc P, Castillo AP, Soliveres S, Luzuriaga AL et al..  2009.  Shrub encroachment can reverse desertification in semi-arid Mediterranean grasslands. Ecology Letters. 12:930-941. Abstract
McKenzie BM, K S, MacKenzie K, Peth S, Horn R.  2009.  Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.
Hopkins DW, Waite IS, McNicol JW, Poulton PR, MacDonald AJ, O'Donnell AG.  2009.  Soil organic carbon contents in long-term experimental grassland plots in the UK (Palace Leas and Park Grass) have not changed consistently in recent decades. Global Change Biology. 15:1739-1754. Abstract
White PJ, Hammond JP.  2009.  The sources of phosphorus in the waters of Great Britain. Journal of Environmental Quality. 38:13-26. Abstract
Neumann G, George TS, Plassard C.  2009.  Strategies and methods for studying the rhizosphere - the plant science toolbox. Plant and SoilPlant and Soil. 321:431-456.
Tyler A, Hunter PD, Carvalho L, Codd GA, Elliott JA, Ferguson CA, Hanley ND, Hopkins DW, Maberly SC, Mearns KJ et al..  2009.  Strategies for monitoring and managing mass populations of toxic cyanobacteria in recreational waters: A multi-interdisciplinary approach. Environmental Health. 8 Supplement 1:-S11.
Mess A, Squire GR, Perry JN, Angevin F, Gomez M, Townend P, Sausse C, Breckling B, Langrell S, Dzeroski S et al..  2009.  Sustainable introduction of GM crops into European agriculture: a summary report of the FP6 SIGMEA research project. Ol. 16:37-51.
2008
Caron-Lormier G, Humphry RW, Bohan DA, Hawes C, Thorbek P.  2008.  Asynchronous and synchronous updating in individual-based models. Ecological Modelling. 212:522-527. Abstract
Hallett PD.  2008.  A brief overview of the causes, impacts and amelioration of soil water repellency - a Review. Soil and Water Research. 3:S21-S29.
Deeks LK, Bengough AG, Stutter MI, Young IM, Zhang X.  2008.  Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348:431-441. Abstract
Gregory PJ, Ingram JSI.  2008.  Climate change and the current 'food crisis'. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 3, 090:1-10. Abstract
Webster EA, Tilston EL, Chudek JA, Hopkins DW.  2008.  Decomposition in soil and chemical characteristics of pollen. European Journal of Soil Science. 59:551-558. Abstract
Cullen DW, Squire GR, McNicol JW, Jacobs JH, Osborne JL, Ford L, Ramsay G, Scrimgeour CM, Young MW.  2008.  Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape. Journal of the Science of Food and Agriculture. 88:2253-2264. Abstract
Hinojosa MB, Carreira JA, Rodr JM, Garc R.  2008.  Effects of pyrite sludge pollution on soil enzyme activities: Ecological dose-response model. Science of the Total Environment. 396:89-99. Abstract
Hopkins DW, Sparrow AD, Shillam LL, English LC, Dennis PG, Novis P, Elberling B, Gregorich EG, Greenfield LG.  2008.  Enzymatic activities and microbial communities in an Antarctic dry valley soil: Responses to C and N supplementation. Soil Biology & Biochemistry. 40:2130-2136. Abstract
Broadley MR, White PJ, Hammond JP, Graham NS, Bowen HC, Emmerson ZF, Fray RG, Iannetta PPM, McNicol JW, May ST.  2008.  Evidence of neutral transcriptome evolution in plants. New Phytologist. 180:587-593. Abstract
Clayton SJ, Read DB, Murray PJ, Gregory PJ.  2008.  Exudation of alcohol and aldehyde sugars from roots of defoliated Lolium perenne L. grown under sterile conditions. Journal of Chemical Ecology. 34:1411-1421. Abstract
Griffiths BS, Hallett PD, Kuan HL, Gregory AS, Watts CW, Whitmore AP.  2008.  Functional resilience of soil microbial communities depends on both soil structure and microbial community composition. Biology and Fertility of Soils. 44:745-754. Abstract
Coucheney E, Daniell TJ, Chenu C, Nunan N.  2008.  Gas chromatographic metabolic profiling: A sensitive tool for functional microbial ecology. Journal of Microbiological Methods. 75:491-500. Abstract
Opik M, Moora M, Zobel M, Saks U, Wheatley RE, Wright F, Daniell TJ.  2008.  High diversity of arbuscular mycorrhizal fungi in a boreal, herb-rich, coniferous forest. New Phytologist. 179:867-876. Abstract
Yoshida S, Hallett PD.  2008.  Impact of hydraulic suction history on crack growth mechanics in soil. Water Resources Research. 44:-W00C01. Abstract
Zhang B, Hallett PD, Zhang G.  2008.  Increase in the fracture toughness and bond energy of clay by a root exudate. European Journal of Soil Science. 59:855-862. Abstract
Karley AJ, Hawes C, Iannetta PPM, Squire GR.  2008.  Intraspecific variation in Capsella bursa-pastoris in plant quality traits for insect herbivores. Weed Research. 48:147-156. Abstract
Abdullahi YA, Akunna JC, White NA, Hallett PD, Wheatley RE.  2008.  Investigating the effects of anaerobic and aerobic post-treatment on quality and stability of organic fraction of municipal solid waste as soil amendment. Bioresource Technology. 99:8631-8636. Abstract
Bishop HO, Grieve IC, Chudek JA, Hopkins DW.  2008.  Liming upland grassland: The effects on earthworm communities and the chemical characteristics of carbon in casts. European Journal of Soil Science. 59:526-531. Abstract
Dennis PG, Miller AJ, Clark IM, Taylor RG, Valsami-Jones E, Hirsch PR.  2008.  A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
Wang J, Zhang X, Bengough AG, Crawford JW.  2008.  Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation. International Journal of Numerical Methods for Heat & Fluid Flow. 18:656-672. Abstract
Bohanec M, Mess A, Scatasta S, Angevin F, Griffiths BS, Krogh PH, Znidars M, Dzeroski S.  2008.  A qualitative multi-attribute model for economic and ecological assessment of genetically modified crops. Ecological Modelling. 215:247-261. Abstract
Hopkins DW, Sparrow AD, Gregorich EG, Novis P, Elberling B, Greenfield LG.  2008.  Redistributed lacustrine detritus as a spatial subsidy of biological resources for soils in an Antarctic dry valley. Geoderma. 144:86-92. Abstract
Debeljak M, Squire GR, Demsar D, Young MW, Dzeroski S.  2008.  Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
Singh BK, Nunan N, Ridgway KP, McNicol JW, Young JPW, Daniell TJ, Prosser JI, Millard P.  2008.  Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10:534-541. Abstract
Ingram JSI, Gregory PJ, Izac AM.  2008.  The role of agronomic research in climate change and food security policy. Agriculture, Ecosystems and Environment. 126:4-12. Abstract
Mahmood-ul-Hassan M, Gregory PJ.  2008.  The role of rainfall intensity and soil in determining rates of flow through cryoturbated chalk. Pakistan Journal of Science and Industrial Research. 51:235-241.
Bahar B, Schmidt O, Moloney AP, Scrimgeour CM, Begley IS, Monahan FJ.  2008.  Seasonal variation in the C, N and S stable isotope composition of retail organic and conventional Irish beef. Food Chemistry. 106:1299-1305. Abstract
Broadley MR, Hammond JP, King GJ, Astley D, Bowen HC, Meacham MC, Mead A, Pink DAC, Teakle G, Hayden R et al..  2008.  Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea. Plant Physiology. 146:1707-1720. Abstract
Griffiths BS, Caul S, Thompson J, Hackett CA, Cortet J, Pernin C, Krogh PH.  2008.  Soil microbial and faunal responses to herbicide tolerant maize and herbicide in two soils. Plant and Soil. 308:93-103. Abstract
Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA.  2008.  Soil microbial respiration in arctic soil does not acclimate to temperature. Ecology Letters. 11:1092-1100. Abstract
Mahmood-ul-Hassan M, Akhtar MS, Gregory PJ.  2008.  Solute movement through intact columns of cryoturbated Upper Chalk. Hydrological Processes. 22:2086-2093. Abstract
Orfanus T, Bedrna Z, Lichner L, Hallett PD, Knava K, Sebin M.  2008.  Spatial variability of water repellency in pine forest soil. Soil and Water. 3:S123-S129. Abstract
Shillam LL, Hopkins DW, Badalucco L, Laudicina VA.  2008.  Structural diversity and enzyme activity of volcanic soils at different stages of development and response to experimental disturbance. Soil Biology & Biochemistry. 40:2182-2185. Abstract
Hammond JP, White PJ.  2008.  Sucrose transport in the phloem; integrating root responses to phosphorus starvation. Journal of Experimental Botany. 59:93-109. Abstract
Garc R, Ochoa V, Hinojosa MB, Carreira JA.  2008.  Suitability of enzyme activities for the monitoring of soil quality improvement in organic agricultural systems. Soil Biology & Biochemistry. 40:2137-2145. Abstract
Tilston EL, Halpin C, Hopkins DW.  2008.  Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere. Biology and Fertility of Soils. 44:897-901. Abstract
Johnson SN, Anderson EA, Dawson G, Griffiths DW.  2008.  Varietal susceptibility of potatoes to wireworm herbivory. Agricultural and Forest Entomology. 10:167-174. Abstract
2007
Andersen MN, Sausse C, Lacroix B, Caul S, Mess A.  2007.  Agricultural studies of GM maize and the field experimental infrastructure of ECOGEN. Pedobiologia. 51:175-184. Abstract
Novis PM, Whitehead D, Gregorich EG, Hunt JE, Sparrow AD, Hopkins DW, Elberling B, Greenfield LG.  2007.  Annual carbon fixation in terrestrial populations of Nostoc commune (Cyanobacteria) from an Antarctic dry valley is driven by temperature regime. Global Change Biology. 13:1224-1237. Abstract
Raven JA.  2007.  Astrobiology: Photosynthesis in watercolours. Nature. 448:-418.
Kuan HL, Hallett PD, Griffiths BS, Gregory AS, Watts CW, Whitmore AP.  2007.  The biological and physical stability and resilience of a selection of Scottish soils to stresses. European Journal of Soil Science. 58:811-821. Abstract
Jones MR, Leith ID, Fowler D, Raven JA, Sutton MA, Nemitz E, Cape JN, Sheppard LJ, Smith RI.  2007.  Concentration-dependent NH3 deposition processes for stomatal and non-stomatal moorland species. Atmospheric Environment. 41:8990-8994. Abstract
Pachepsky E, Bown JL, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 2: Linking diversity and function. Ecological Modelling. 207:277-285. Abstract
Valentine TA, Randall E, Wypijewski K, Chapman S, Jones JT, Oparka KJ.  2007.  Delivery of macromolecules to plant parasitic nematodes using a tobacco rattle virus vector. Plant Biotechnology Journal. 5:827-834. Abstract
George TS, Simpson RJ, Gregory PJ, Richardson AE.  2007.  Differential interaction of Aspergillus niger and Peniophora lycii phytases with soil particles affects the hydrolysis of inositol phosphates. Soil Biology & Biochemistry. 39:793-803. Abstract
Mao X, Hu F, Griffiths BS, Chen XY, Liu M, Li H.  2007.  Do bacterial-feeding nematodes stimulate root proliferation through hormonal effects? Soil Biology & Biochemistry. 39:1816-1819. Abstract
El Zemrany H, Czarnes S, Hallett PD, Alamercery S, Bally R, Monrozier LJ.  2007.  Early changes in root characteristics of maize (Zea mays) following seed inoculation with the PGPR Azospirillum lipoferum CRT1. Plant and Soil. 291:109-118. Abstract
Krogh PH, Griffiths BS.  2007.  ECOGEN - Soil ecological and economic evaluation of genetically modified crops. Pedobiologia. 51:171-173. Abstract
Chope GA, Terry LA, White PJ.  2007.  The effect of 1-methylcyclopropene (1-MCP) on the physical and biochemical characteristics of onion cv. SS1 bulbs during storage. Postharvest Biology and Technology. 44:131-140. Abstract
Johnson SN, Zhang X, Crawford JW, Gregory PJ, Young IM.  2007.  Egg hatching and survival time of soil-dwelling insect larvae: a partial differential equation model and experimental validation. Ecological Modelling. 202:493-502. Abstract
Cortet J, Griffiths BS, Bohanec M, Demsar D, Andersen MN, Caul S, Birch ANE, Pernin C, Tabone E, de Vaufleury A et al..  2007.  Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
Watanabe T, Broadley MR, Jansen S, White PJ, Takada J, Satake K, Takamatsu T, Tuah SJ, Osaki M.  2007.  Evolutionary control of leaf element composition in plants. New Phytologist. 174:516-523. Abstract
Zazzo A, Harrison SM, Bahar B, Moloney AP, Monahan FJ, Scrimgeour CM, Schmidt O.  2007.  Experimental determination of dietary carbon turnover in bovine hair and hoof. Canadian Journal of Zoology. 85:1239-1248. Abstract
de Vaufleury A, Kramarz P, Binet P, Cortet J, Caul S, Andersen MN, Plumey E, Coeurdassier M, Krogh PH.  2007.  Exposure and effects assessments of Bt maize on non-target organisms (gastropod, microarthropods, mycorrhizal fungi) in a semi-field microcosm experiment. Pedobiologia. 51:185-194. Abstract
White PJ, Bowen HC, Marshall B, Broadley MR.  2007.  Extraordinarily high leaf selenium to sulfur ratios define "Se-accumulator" plants. Annals of Botany. 100:111-118. Abstract
Lichner L, Hallett PD, Feeney D, Dugova O, Sir M, Tesar M.  2007.  Field measurement of soil water repellency and its impact on water flow under different vegetation. Biologia. 62:537-541. Abstract
Zhang X, Johnson SN, Crawford JW, Gregory PJ, Young IM.  2007.  A general random walk model for the leptokurtic distribution of organism movement: theory and application. Ecological Modelling. 200:79-88. Abstract
Hopkins DW, Webster EA, Boerjan W, Pilate G, Halpin C.  2007.  Genetically modified lignin belowground. Nature Biotechnology. 25:168-169. Abstract
Mickovski SB, Bengough AG, Bransby MF, Davies MCR, Hallett PD, Sonnenberg R.  2007.  Material stiffness, branching pattern, and soil water matric potential affect the pullout resistance of model root systems. European Journal of Soil Science. 58:1471-1481. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Cortet J, Andersen MN, Krogh PH.  2007.  Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
Johnson SN, Crawford JW, Gregory PJ, Grinev DV, Mankin RW, Masters GJ, Murray PJ, Wall DH, Zhang X.  2007.  Non-invasive techniques for investigating and modelling root-feeding insects in managed and natural systems. Agricultural and Forest Entomology. 9:39-46.
Graham NS, Broadley MR, Hammond JP, White PJ, May ST.  2007.  Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics. 8:-344. Abstract
Gregory AS, Watts CW, Whalley WR, Kuan HL, Griffiths BS, Hallett PD, Whitmore AP.  2007.  Physical resilience of soil to field compaction and the interactions with plant growth and microbial community structure. European Journal of Soil Science. 58:1221-1232. Abstract
Bohanec M, Cortet J, Griffiths BS, Znidarsic M, Debeljak M, Caul S, Thompson J, Krogh PH.  2007.  A qualitative multi-attribute model for assessing the impact of cropping systems on soil quality. Pedobiologia. 51:239-250. Abstract
Gooding MJ, Gregory PJ, Ford KE, Ruske RE.  2007.  Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
Hermans C, Hammond JP, Verbruggen N, White PJ.  2007.  Response to Andrews et al.: Correlations and causality. Trends in Plant Science. 12:532-533. Abstract
Krogh PH, Griffiths BS, Demsar D, Bohanec M, Debeljak M, Andersen MN, Sausse C, Birch ANE, Caul S, Holmstrup M et al..  2007.  Responses by earthworms to reduced tillage in herbicide tolerant maize and Bt maize cropping systems. Pedobiologia. 51:219-227. Abstract
Velikova V, Edreva AM, Tsonev T, Jones HG.  2007.  Singlet oxygen quenching by phenylamides and their parent compounds. Zeischrift f. 62c:833-838.
Begg GS, Cullen DW, Iannetta PPM, Squire GR.  2007.  Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots. Transgenic Research. 16:51-63. Abstract
Moora M, Daniell TJ, Kalle H, Liira J, P K, Roosaluste E, Opik M, Wheatley RE, Zobel M.  2007.  Spatial pattern and species richness of boreonemoral forest understorey and its determinants - A comparison of differently managed forests. Forest Ecology & Management. 250:64-70. Abstract
Harrison SM, Monahan FJ, Zazzo A, Bahar B, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Three-dimensional growth of bovine hoof as recorded by carbon stable isotope ratios. Rapid Communications in Mass Spectrometry. 21:3971-3976. Abstract
Harrison SM, Zazzo A, Bahar B, Monahan FJ, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Using hooves for high-resolution isotopic reconstruction of bovine dietary history. Rapid Communications in Mass Spectrometry. 21:479-486. Abstract
Iannetta PPM, Begg GS, Hawes C, Young MW, Russell JR, Squire GR.  2007.  Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
Griffiths BS, Heckmann LH, Caul S, Thompson J, Scrimgeour CM, Krogh PH.  2007.  Varietal effects of eight paired lines of transgenic Bt maize and near-isogenic non-Bt maize on soil microbial and nematode community structure. Plant Biotechnology Journal. 5:60-68. Abstract
2006
Johnson SN, Birch ANE, Gregory PJ, Murray PJ.  2006.  The 'mother knows best' principle: should soil insects be included in the preference-performance debate? Ecological Entomology. 31:395-401. Abstract
Meharg AA, Deacon C, Edwards KJ, Donaldson M, Davidson DA, Spring C, Scrimgeour CM, Feldmann J, Rabb A.  2006.  Ancient manuring practices pollute arable soils at the St Kilda World Heritage Site, Scottish North Atlantic. Chemosphere. 64:1818-1828. Abstract
Mao X, Hu F, Griffiths BS, Li H.  2006.  Bacterial-feeding nematodes enhance root growth of tomato seedlings. Soil Biology & Biochemistry. 38:1615-1622. Abstract
Hamza O, Bengough AG, Bransby MF, Davies MCR, Hallett PD.  2006.  Biomechanics of plant roots: estimating localised deformation with particle image velocimetry. Biosystems Engineering. 94:119-132. Abstract
Gregory AS, Whalley WR, Watts CW, Bird NRA, Hallett PD, Whitmore AP.  2006.  Calculation of the compression index and precompression stress from soil compression test data. Soil and Tillage Research. 89:45-57. Abstract
Raven JA, Karley AJ.  2006.  Carbon sequestration: Photosynthesis and subsequent processes. Current Biology. 16:R165-R167. Abstract
Johnson SN, Gregory PJ.  2006.  Chemically mediated host-plant location and selection by root-feeding insects. Physiological Entomology. 31:1-13. Abstract
Meharg AA, Scrimgeour CM, Hossain SA, Fuller K, Cruickshank K, Williams PN, Kinniburgh DG.  2006.  Codeposition of organic carbon and arsenic in Bengal Delta aquifers. Environmental Science & Technology. 40:4928-4935. Abstract
Heckmann L, Griffiths BS, Caul S, Thompson J, Pusztai-Carey M, Moar, W.J, Andersen MN, Krogh PH.  2006.  Consequences for Protaphorura armata (Collembola: Onychiuridae) following exposure to genetically modified Bacillus thuringiensis (Bt) maize and non-Bt maize. Environmental Pollution. 142:212-216. Abstract
Cortet J, Andersen MN, Caul S, Griffiths BS, Joffre R, Lacroix B, Sausse C, Thompson J, Krogh PH.  2006.  Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract
George TS, Turner BL, Gregory PJ, Cade-Menun BJ, Richardson AE.  2006.  Depletion of organic phosphorus from Oxisols in relation to phosphatase activities in the rhizosphere. European Journal of Soil Science. 57:47-57. Abstract
Johnson SN, Zhang X, Crawford J, Gregory PJ, Hix N, Jarvis S, Murray PJ, Young IM.  2006.  Effects of CO2 on the searching behaviour of the root-feeding clover weevil Sitona lepidus (Coleoptera: Curculionidae). Bulletin of Entomological Research. 96:361-366. Abstract
Murillo-Amador B, Jones HG, Kaya C, Aguilar RL, Garcia-Hernandez JL, Troyo-Di E, Avila-Serrano NY, Rueda-Puente E.  2006.  Effects of foliar application of calcium nitrate on growth and physiological attributes of cowpea (Vigna unguiculata L.Walp.) grown under salt stress. Environmental and Experimental Botany. 58:188-196.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.