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Found 245 results

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2005
Norra S, Handley LL, Berner Z, St D.  2005.  13C and 15N natural abundances of urban soils and herbaceous vegetation in Karlsruhe, Germany. European Journal of Soil Science. 56:607-620. Abstract
Bahar B, Monahan FJ, Moloney AP, O'Kiely P, Scrimgeour CM, Schmidt O.  2005.  Alteration of the carbon and nitrogen stable isotope composition of beef by substitution of grass silage with maize silage. Rapid Communications in Mass Spectrometry. 19:1937-1942. Abstract
Johnson SN, Gregory PJ, Greenham JR, Zhang X, Murray PJ.  2005.  Attractive properties of an isoflavonoid found in white clover root nodules on the clover root weevil. Journal of Chemical Ecology. 31:2223-2229. Abstract
Griffiths BS, Hallett PD, Kuan HL, Pitkin Y, Aitken MN.  2005.  Biological and physical resilience of soil amended with heavy metal-contaminated sewage sludge. European Journal of Soil Science. 56:197-206. Abstract
Aflakpui GKS, Gregory PJ, Froud-Williams RJ.  2005.  Carbon (13C) and nitrogen (15N) translocation in a maize-Striga hermonthica association. Experimental Agriculture. 41:321-333. Abstract
Grover SPP, McKenzie BM, Baldock JA, Papst WA.  2005.  Chemical characterisation of bog peat and dried peat of the Australian Alps. Australian Journal of Soil Research. 43:963-971. Abstract
Gregory PJ, Ingram JSI, Brklacich M.  2005.  Climate change and food security. Philosophical Transactions of the Royal Society of London - Series B. 360:2139-2148. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Scrimgeour CM, Andersen MN, Cortet J, Mess A, Sausse C, Lacroix B et al..  2005.  A comparison of soil microbial community structure, protozoa and nematodes in field plots of conventional and genetically modified maize expressing the Bacillus thuringiensis CryIAb toxin. Plant and Soil. 275:135-146. Abstract
Hallett PD, Newson TA.  2005.  Describing soil crack formation using elastic-plastic fracture mechanics. European Journal of Soil Science. 56:31-38. Abstract
Zhang X, Deeks LK, Bengough AG, Crawford JW, Young IM.  2005.  Determination of soil hydraulic conductivity with the lattice Boltzmann method and soil thin-section technique. Journal of Hydrology. 306:59-70.
Wang J, Zhang X, Bengough AG, Crawford JW.  2005.  Domain-decomposition method for parallel lattice Boltzmann simulation of incompressible flow in porous media. Physical Review E. 72:016706-1-016706-11. Abstract
van Haren JLM, Handley LL, Biel KY, Kudeyarov VN, McLain JET, Martens DA, Colodner DC.  2005.  Drought-induced nitrous oxide flux dynamics in an enclosed tropical forest. Global Change Biology. 11:1247-1257. Abstract
Bruneau PMC, Davidson DA, Grieve IC, Young IM, Nunan N.  2005.  The effects of soil horizons and faunal excrement on bacterial distribution in an upland grassland soil. FEMS Microbiology Ecology. 52:139-144. Abstract
Bohan DA, Boffey CWH, Brooks DR, Clark SJ, Dewar AM, Firbank LG, Haughton AJ, Hawes C, Heard MS, May MJ et al..  2005.  Effects on weed and invertebrate abundance and diversity of herbicide management in genetically modified herbicide-tolerant winter-sown oilseed rape. Proceedings of the Royal Society of London, Series B. 272:463-474. Abstract
Low JN, Scrimgeour CM, Horton P.  2005.  Elaidic acid, (trans-9-octadecenoic acid). Acta Crystallographica Section E-Structure Reports Online. E61:3730-3732. Abstract
Karanastasi E, Decraemer W, Kyriakopoulou PE, Neilson R.  2005.  First report of the stubby-root nematode Paratrichodorus teres associated with artichoke (Cynara scolymus) in Greece. Plant Disease. 89:-685. Abstract
Rangel-Castro JI, Prosser JI, Ostle N, Scrimgeour CM, Killham K, Meharg AA.  2005.  Flux and turnover of fixed carbon in soil microbial biomass of limed and un-limed plots of an upland grassland ecosystem. Environmental Microbiology. 7:544-552. Abstract
Krivtsov V, Liddell K, Bezginova T, Salmond R, Staines HJ, Watling R, Garside A, Thompson JA, Griffiths BS, Brendler A.  2005.  Forest litter bacteria: relationships with fungi, microfauna, and litter composition over a winter-spring period. Polish Journal of Ecology. 53:383-394. Abstract
Schmidt O, Quilter JM, Bahar B, Moloney AP, Scrimgeour CM, Begley IS, Monahan FJ.  2005.  Inferring the origin and dietary history of beef from C, N and S stable isotope ratio analysis. Food Chemistry. 91:545-549. Abstract
Oro V, H J, Karanastasi E, Krnjaic S, Krnjaic D, Brown DJF, Neilson R.  2005.  Inter-population variability of Longidorus euonymus Mali and Hooper, 1974 (Nematoda, Dorylaimida) and comment upon the number of juvenile developmental stages. Helminthologia. 42:155-165. Abstract
Brooks DR, Clark SJ, Perry JN, Bohan DA, Champion GT, Firbank LG, Haughton AJ, Hawes C, Heard MS, Woiwod IP.  2005.  Invertebrate biodiversity in maize following withdrawal of triazine herbicides. Proceedings of the Royal Society of London, Series B. 272:1497-1502. Abstract
Nunan N, Daniell TJ, Singh BK, Papert A, McNicol JW, Prosser JI.  2005.  Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques. Applied and Environmental Microbiology. 71:6784-6792. Abstract
Zhang X, Crawford JW, Deeks LK, Stutter MI, Bengough AG, Young IM.  2005.  A mass balance based numerical method for the fractional advection-dispersion equation: Theory and application. Water Resources Research. 41:-W07029. Abstract
Zhang B, Horn R, Hallett PD.  2005.  Mechanical resilience of degraded soil amended with organic matter. Soil Science Society of America Journal. 69:864-871. Abstract
Hinsinger P, Gobran GR, Gregory PJ, Wenzel WW.  2005.  Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract
Humphris SN, Bengough AG, Griffiths BS, Killham K, Rodger S, Stubbs V, Valentine TA, Young IM.  2005.  Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize. FEMS Microbiology Ecology. 54:123-130. Abstract
Dyckmans J, Scrimgeour CM, Schmidt O.  2005.  A simple and rapid method for labelling earthworms with 15N and 13C. Soil Biology & Biochemistry. 37:989-993. Abstract
Boag B, Deeks L, Orr A, Neilson R.  2005.  A spatio-temporal analysis of a New Zealand flatworm (Arthurdendyus triangulatus) population in western Scotland. Annals of Applied Biology. 147:81-88. Abstract
Rangel-Castro JI, Killham K, Ostle N, Nicol GW, Anderson IC, Scrimgeour CM, Ineson P, Meharg A, Prosser JI.  2005.  Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
Trudgill DL, Honek A, Li D, van Straalen NM.  2005.  Thermal time - concepts and utility. Annals of Applied Biology. 146:1-14. Abstract
Ellis CJ, Crittenden PD, Scrimgeour CM, Ashcroft CJ.  2005.  Translocation of 15N indicates nitrogen recycling in the mat-forming lichen Cladonia portentosa. New Phytologist. 168:423-434. Abstract
2006
Johnson SN, Birch ANE, Gregory PJ, Murray PJ.  2006.  The 'mother knows best' principle: should soil insects be included in the preference-performance debate? Ecological Entomology. 31:395-401. Abstract
Meharg AA, Deacon C, Edwards KJ, Donaldson M, Davidson DA, Spring C, Scrimgeour CM, Feldmann J, Rabb A.  2006.  Ancient manuring practices pollute arable soils at the St Kilda World Heritage Site, Scottish North Atlantic. Chemosphere. 64:1818-1828. Abstract
Mao X, Hu F, Griffiths BS, Li H.  2006.  Bacterial-feeding nematodes enhance root growth of tomato seedlings. Soil Biology & Biochemistry. 38:1615-1622. Abstract
Hamza O, Bengough AG, Bransby MF, Davies MCR, Hallett PD.  2006.  Biomechanics of plant roots: estimating localised deformation with particle image velocimetry. Biosystems Engineering. 94:119-132. Abstract
Gregory AS, Whalley WR, Watts CW, Bird NRA, Hallett PD, Whitmore AP.  2006.  Calculation of the compression index and precompression stress from soil compression test data. Soil and Tillage Research. 89:45-57. Abstract
Raven JA, Karley AJ.  2006.  Carbon sequestration: Photosynthesis and subsequent processes. Current Biology. 16:R165-R167. Abstract
Johnson SN, Gregory PJ.  2006.  Chemically mediated host-plant location and selection by root-feeding insects. Physiological Entomology. 31:1-13. Abstract
Meharg AA, Scrimgeour CM, Hossain SA, Fuller K, Cruickshank K, Williams PN, Kinniburgh DG.  2006.  Codeposition of organic carbon and arsenic in Bengal Delta aquifers. Environmental Science & Technology. 40:4928-4935. Abstract
Heckmann L, Griffiths BS, Caul S, Thompson J, Pusztai-Carey M, Moar, W.J, Andersen MN, Krogh PH.  2006.  Consequences for Protaphorura armata (Collembola: Onychiuridae) following exposure to genetically modified Bacillus thuringiensis (Bt) maize and non-Bt maize. Environmental Pollution. 142:212-216. Abstract
Hopkins DW, Sparrow AD, Novis P, Gregorich EG, Elberling B, Greenfield LG.  2006.  Controls on the distribution of productivity and organic resources in Antarctic dry valley soils (Review). Proceedings of the Royal Society B. 273:2687-2695. Abstract
Cortet J, Andersen MN, Caul S, Griffiths BS, Joffre R, Lacroix B, Sausse C, Thompson J, Krogh PH.  2006.  Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract
George TS, Turner BL, Gregory PJ, Cade-Menun BJ, Richardson AE.  2006.  Depletion of organic phosphorus from Oxisols in relation to phosphatase activities in the rhizosphere. European Journal of Soil Science. 57:47-57. Abstract
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui A, Zhan J, McDonald BA.  2006.  Differential selection on Rhynchosporium secalis during parasitic and saprophytic phases in the barley scald disease cycle. Phytopathology. 96:1214-1222. Abstract
Krivtsov V, Bezginova T, Salmond R, Liddell K, Garside A, Thompson J, Palfreyman JW, Staines HJ, Brendler A, Griffiths BS et al..  2006.  Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland. Forestry. 79:201-216. Abstract
Boag B, Neilson R, Scrimgeour CM.  2006.  The effect of starvation on the planarian Arthurdendyus triangulatus (Tricladida: Terricola) as measured by stable isotopes. Biology and Fertility of Soils. 43:267-270. Abstract
Johnson SN, Zhang X, Crawford J, Gregory PJ, Hix N, Jarvis S, Murray PJ, Young IM.  2006.  Effects of CO2 on the searching behaviour of the root-feeding clover weevil Sitona lepidus (Coleoptera: Curculionidae). Bulletin of Entomological Research. 96:361-366. Abstract
Firbank LG, Rothery P, May MJ, Clark SJ, Scott RJ, R.C. S, Boffey CWH, Brooks DR, Champion GT, Haughton AJ et al..  2006.  Effects of genetically modified herbicide-tolerant cropping systems on weed seedbanks in two years of following crops. Biology Letters. 2:140-143. Abstract
Heard MS, Clark SJ, Rothery P, Perry JN, Bohan DA, Brooks DR, Champion GT, Dewar AM, Hawes C, Haughton AJ et al..  2006.  Effects of successive seasons of genetically modified herbicide-tolerant maize cropping on weeds and invertebrates. Annals of Applied Biology. 149:249-254. Abstract
Iannetta PPM, Laarhoven L-J, Medina-Escobar N, James EK, McManus MT, Davies HV, Harren FJM.  2006.  Ethylene and carbon dioxide production by developing strawberries show a correlative pattern that is indicative of ripening climacteric fruit. Physiologia Plantarum. 127:247-259. Abstract
Kuan HL, Fenwick C, Glover LA, Griffiths BS, Ritz K.  2006.  Functional resilience of microbial communities from perturbed upland grassland soils to further persistent or transient stresses. Soil Biology & Biochemistry. 38:2300-2306. Abstract
Ford KE, Gregory PJ, Gooding MJ, Pepler S.  2006.  Genotype and fungicide effects on late-season root growth of winter wheat.. Plant and Soil. 284:33-44. Abstract
Hermans C, Hammond JP, White PJ, Verbruggen N.  2006.  How do plants respond to nutrient shortage by biomass allocation? Trends in Plant Science. 11:610-617. Abstract
Feeney D, Hallett PD, Rodger S, Bengough AG, White NA, Young IM.  2006.  Impact of fungal and bacterial biocides on microbial induced water repellency in arable soil. Geoderma. 135:72-80. Abstract
Hopkins DW, Webster EA, Tilston EL, Halpin C.  2006.  Influence of available substrates on the decomposition in soil of plant materials with genetic modifications to lignin biosynthesis. European Journal of Soil Science. 57:495-503. Abstract
Dekker LW, Hallett PD, Lichner L, Novak V, Sir M.  2006.  Introduction to biohydrology. BiologiaBiohydrology, Special Issue, Biologia 61/Supplement 19. 61, Suppl 19:223-224. Abstract
Nunan N, Ritz K, Rivers M, Feeney D, Young IM.  2006.  Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract
Malloch G, Highet F, Kasprowicz L, Pickup J, Neilson R, Fenton B.  2006.  Microsatellite marker analysis of peach-potato aphids (Myzus persicae, Homoptera: Aphididae) from Scottish suction traps. Bulletin of Entomological Research. 96:573-582. Abstract
Zhang X, Johnson SN, Gregory PJ, Crawford JW, Young IM, Murray PJ, Jasinka E.  2006.  Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract
Begg GS, Hockaday S, McNicol JW, Askew M, Squire GR.  2006.  Modelling the persistence of volunteer oilseed rape (Brassica napus). Ecological Modelling. 198:195-207. Abstract
Griffiths BS, Donn S, Neilson R, Daniell TJ.  2006.  Molecular sequencing and morphological analysis of a nematode community. Applied Soil Ecology. 32:325-337. Abstract
Tuomainen MH, Nunan N, Lehesranta SJ, Tervahauta AI, Hassinen VH, Schat H, Koistinen KM, Auriola S, McNicol JW, Karenlampi SO.  2006.  Multivariate analysis of protein profiles of metal hyperaccumulator Thlaspi caerulescens accessions. Proteomics. 6:3696-3706. Abstract
Holeva R, Phillips MS, Neilson R, Brown DJF, Young V, Boutsika K, Blok VC.  2006.  Real-time PCR detection and quantification of vector trichodorid nematodes and Tobacco rattle virus. Molecular and Cellular Probes. 20:203-211. Abstract
Lazarova SS, Malloch G, Oliveira CMG, Hubschen J, Neilson R.  2006.  Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations. Journal of Nematology. 38:404-410. Abstract
Bengough AG, Bransby MF, Hans J, McKenna SJ, Roberts TJ, Valentine TA.  2006.  Root responses to soil physical conditions; growth dynamics from field to cell. Journal of Experimental Botany. 57:437-447. Abstract
Gregory PJ.  2006.  Roots, rhizosphere and soil: the route to a better understanding of soil science? European Journal of Soil Science. 57:2-12. Abstract
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser JI, Wheatley RE, McNicol JW, Millard P.  2006.  Sheep-urine-induced changes in soil microbial community structure. FEMS Microbiology Ecology. 56:310-320. Abstract
Hassall M, Adl S, Berg M, Griffiths BS, Scheu S.  2006.  Soil fauna-microbe interactions: towards a conceptual framework for research. European Journal of Soil Biology. 42:S54-S60. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Scrimgeour CM, Cortet J, Foggo A, Hackett CA, Krogh PH.  2006.  Soil microbial and faunal community responses to Bt maize and insecticide in two soils. Journal of Environmental Quality. 35:734-741. Abstract
Wall DH, Adams BJ, Barrett JE, Hopkins DW, Virginia RA.  2006.  A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica. Soil Biology & Biochemistry. 38:3001-3002. Abstract
Feeney D, Crawford JW, Daniell TJ, Hallett PD, Nunan N, Ritz K, Rivers M, Young IM.  2006.  Three-dimensional microorganisation of the soil-root-microbe system. Microbial Ecology. 52:151-158. Abstract
Gregorich EG, Rochette P, Hopkins DW, McKim UF, St-Georges P.  2006.  Tillage-induced environmental conditions in soil and substrate limitation determine biogenic gas production. Soil Biology & Biochemistry. 38:2614-2628. Abstract
Oliveira CMG, Ferraz LCCB, Neilson R.  2006.  Xiphinema krugi, species complex or complex of cryptic species? Journal of Nematology. 38:418-428. Abstract
2007
George TS, Simpson RJ, Hadobas PA, Marshall DJ, Richardson AE.  2007.  Accumulation and phosphatase-lability of organic phosphorus in fertilised pasture soils. Australian Journal of Agricultural Research. 58:47-55. Abstract
Andersen MN, Sausse C, Lacroix B, Caul S, Mess A.  2007.  Agricultural studies of GM maize and the field experimental infrastructure of ECOGEN. Pedobiologia. 51:175-184. Abstract
Novis PM, Whitehead D, Gregorich EG, Hunt JE, Sparrow AD, Hopkins DW, Elberling B, Greenfield LG.  2007.  Annual carbon fixation in terrestrial populations of Nostoc commune (Cyanobacteria) from an Antarctic dry valley is driven by temperature regime. Global Change Biology. 13:1224-1237. Abstract
Kuan HL, Hallett PD, Griffiths BS, Gregory AS, Watts CW, Whitmore AP.  2007.  The biological and physical stability and resilience of a selection of Scottish soils to stresses. European Journal of Soil Science. 58:811-821. Abstract
Bown JL, Pachepsky E, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 1: Model development and predicted patterns of diversity. Ecological Modelling. 207:264-276. Abstract
Pachepsky E, Bown JL, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 2: Linking diversity and function. Ecological Modelling. 207:277-285. Abstract
Valentine TA, Randall E, Wypijewski K, Chapman S, Jones JT, Oparka KJ.  2007.  Delivery of macromolecules to plant parasitic nematodes using a tobacco rattle virus vector. Plant Biotechnology Journal. 5:827-834. Abstract
George TS, Simpson RJ, Gregory PJ, Richardson AE.  2007.  Differential interaction of Aspergillus niger and Peniophora lycii phytases with soil particles affects the hydrolysis of inositol phosphates. Soil Biology & Biochemistry. 39:793-803. Abstract
Mao X, Hu F, Griffiths BS, Chen XY, Liu M, Li H.  2007.  Do bacterial-feeding nematodes stimulate root proliferation through hormonal effects? Soil Biology & Biochemistry. 39:1816-1819. Abstract
El Zemrany H, Czarnes S, Hallett PD, Alamercery S, Bally R, Monrozier LJ.  2007.  Early changes in root characteristics of maize (Zea mays) following seed inoculation with the PGPR Azospirillum lipoferum CRT1. Plant and Soil. 291:109-118. Abstract
Krogh PH, Griffiths BS.  2007.  ECOGEN - Soil ecological and economic evaluation of genetically modified crops. Pedobiologia. 51:171-173. Abstract
Chope GA, Terry LA, White PJ.  2007.  The effect of 1-methylcyclopropene (1-MCP) on the physical and biochemical characteristics of onion cv. SS1 bulbs during storage. Postharvest Biology and Technology. 44:131-140. Abstract
Johnson SN, Zhang X, Crawford JW, Gregory PJ, Young IM.  2007.  Egg hatching and survival time of soil-dwelling insect larvae: a partial differential equation model and experimental validation. Ecological Modelling. 202:493-502. Abstract
Cortet J, Griffiths BS, Bohanec M, Demsar D, Andersen MN, Caul S, Birch ANE, Pernin C, Tabone E, de Vaufleury A et al..  2007.  Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
Watanabe T, Broadley MR, Jansen S, White PJ, Takada J, Satake K, Takamatsu T, Tuah SJ, Osaki M.  2007.  Evolutionary control of leaf element composition in plants. New Phytologist. 174:516-523. Abstract
Zazzo A, Harrison SM, Bahar B, Moloney AP, Monahan FJ, Scrimgeour CM, Schmidt O.  2007.  Experimental determination of dietary carbon turnover in bovine hair and hoof. Canadian Journal of Zoology. 85:1239-1248. Abstract
de Vaufleury A, Kramarz P, Binet P, Cortet J, Caul S, Andersen MN, Plumey E, Coeurdassier M, Krogh PH.  2007.  Exposure and effects assessments of Bt maize on non-target organisms (gastropod, microarthropods, mycorrhizal fungi) in a semi-field microcosm experiment. Pedobiologia. 51:185-194. Abstract
White PJ, Bowen HC, Marshall B, Broadley MR.  2007.  Extraordinarily high leaf selenium to sulfur ratios define "Se-accumulator" plants. Annals of Botany. 100:111-118. Abstract
Lichner L, Hallett PD, Feeney D, Dugova O, Sir M, Tesar M.  2007.  Field measurement of soil water repellency and its impact on water flow under different vegetation. Biologia. 62:537-541. Abstract
Zhang X, Johnson SN, Crawford JW, Gregory PJ, Young IM.  2007.  A general random walk model for the leptokurtic distribution of organism movement: theory and application. Ecological Modelling. 200:79-88. Abstract
Hopkins DW, Webster EA, Boerjan W, Pilate G, Halpin C.  2007.  Genetically modified lignin belowground. Nature Biotechnology. 25:168-169. Abstract
Mickovski SB, Bengough AG, Bransby MF, Davies MCR, Hallett PD, Sonnenberg R.  2007.  Material stiffness, branching pattern, and soil water matric potential affect the pullout resistance of model root systems. European Journal of Soil Science. 58:1471-1481. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Cortet J, Andersen MN, Krogh PH.  2007.  Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
Riga E, Karanastasi E, Oliveira CMG, Neilson R.  2007.  Molecular identification of two stubby root nematode species. American Journal of Potato Research. 84:161-167. Abstract
Caumette G, Ouypornkochagorn S, Scrimgeour CM, Raab A, Feldmann J.  2007.  Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract
Johnson SN, Crawford JW, Gregory PJ, Grinev DV, Mankin RW, Masters GJ, Murray PJ, Wall DH, Zhang X.  2007.  Non-invasive techniques for investigating and modelling root-feeding insects in managed and natural systems. Agricultural and Forest Entomology. 9:39-46.
Graham NS, Broadley MR, Hammond JP, White PJ, May ST.  2007.  Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics. 8:-344. Abstract
Gregory AS, Watts CW, Whalley WR, Kuan HL, Griffiths BS, Hallett PD, Whitmore AP.  2007.  Physical resilience of soil to field compaction and the interactions with plant growth and microbial community structure. European Journal of Soil Science. 58:1221-1232. Abstract
Bohanec M, Cortet J, Griffiths BS, Znidarsic M, Debeljak M, Caul S, Thompson J, Krogh PH.  2007.  A qualitative multi-attribute model for assessing the impact of cropping systems on soil quality. Pedobiologia. 51:239-250. Abstract
Gooding MJ, Gregory PJ, Ford KE, Ruske RE.  2007.  Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
Hermans C, Hammond JP, Verbruggen N, White PJ.  2007.  Response to Andrews et al.: Correlations and causality. Trends in Plant Science. 12:532-533. Abstract
Krogh PH, Griffiths BS, Demsar D, Bohanec M, Debeljak M, Andersen MN, Sausse C, Birch ANE, Caul S, Holmstrup M et al..  2007.  Responses by earthworms to reduced tillage in herbicide tolerant maize and Bt maize cropping systems. Pedobiologia. 51:219-227. Abstract
Begg GS, Cullen DW, Iannetta PPM, Squire GR.  2007.  Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots. Transgenic Research. 16:51-63. Abstract
Moora M, Daniell TJ, Kalle H, Liira J, P K, Roosaluste E, Opik M, Wheatley RE, Zobel M.  2007.  Spatial pattern and species richness of boreonemoral forest understorey and its determinants - A comparison of differently managed forests. Forest Ecology & Management. 250:64-70. Abstract
Bohan DA, Hawes C, Haughton AJ, Denholm I, Champion GT, Perry JN, Clark SJ.  2007.  Statistical models to evaluate invertebrate-plant trophic interactions in arable systems. Bulletin of Entomological Research. 97:265-280. Abstract
Krivtsov V, Garside A, Brendler A, Liddell K, Griffiths BS, Staines HJ.  2007.  A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology. 57:467-484. Abstract
Broadley MR, White PJ, Hammond JP, Zelko I, Lux A.  2007.  Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
Harrison SM, Monahan FJ, Zazzo A, Bahar B, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Three-dimensional growth of bovine hoof as recorded by carbon stable isotope ratios. Rapid Communications in Mass Spectrometry. 21:3971-3976. Abstract
Harrison SM, Zazzo A, Bahar B, Monahan FJ, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Using hooves for high-resolution isotopic reconstruction of bovine dietary history. Rapid Communications in Mass Spectrometry. 21:479-486. Abstract
Iannetta PPM, Begg GS, Hawes C, Young MW, Russell JR, Squire GR.  2007.  Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
Griffiths BS, Heckmann LH, Caul S, Thompson J, Scrimgeour CM, Krogh PH.  2007.  Varietal effects of eight paired lines of transgenic Bt maize and near-isogenic non-Bt maize on soil microbial and nematode community structure. Plant Biotechnology Journal. 5:60-68. Abstract
2008
Caron-Lormier G, Humphry RW, Bohan DA, Hawes C, Thorbek P.  2008.  Asynchronous and synchronous updating in individual-based models. Ecological Modelling. 212:522-527. Abstract
Hallett PD.  2008.  A brief overview of the causes, impacts and amelioration of soil water repellency - a Review. Soil and Water Research. 3:S21-S29.
Deeks LK, Bengough AG, Stutter MI, Young IM, Zhang X.  2008.  Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348:431-441. Abstract
Gregory PJ, Ingram JSI.  2008.  Climate change and the current 'food crisis'. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 3, 090:1-10. Abstract
Ram JC, Woche SK, Bachmann J, Goebel MO, Hallett PD.  2008.  Comparing capillary rise contact angles of soil aggregates and homogenised soil. Geoderma. 146:336-343. Abstract
Webster EA, Tilston EL, Chudek JA, Hopkins DW.  2008.  Decomposition in soil and chemical characteristics of pollen. European Journal of Soil Science. 59:551-558. Abstract
Cullen DW, Squire GR, McNicol JW, Jacobs JH, Osborne JL, Ford L, Ramsay G, Scrimgeour CM, Young MW.  2008.  Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape. Journal of the Science of Food and Agriculture. 88:2253-2264. Abstract
Donn S, Griffiths BS, Neilson R, Daniell TJ.  2008.  DNA extraction from soil nematodes for multi-sample community studies. Applied Soil Ecology. 38:20-26. Abstract
Zazzo A, Moloney AP, Monahan FJ, Scrimgeour CM, Schmidt O.  2008.  Effect of age and food intake on dietary carbon turnover recorded in sheep wool. Rapid Communications in Mass Spectrometry. 22:2937-2945. Abstract
Hinojosa MB, Carreira JA, Rodr JM, Garc R.  2008.  Effects of pyrite sludge pollution on soil enzyme activities: Ecological dose-response model. Science of the Total Environment. 396:89-99. Abstract
Hopkins DW, Sparrow AD, Shillam LL, English LC, Dennis PG, Novis P, Elberling B, Gregorich EG, Greenfield LG.  2008.  Enzymatic activities and microbial communities in an Antarctic dry valley soil: Responses to C and N supplementation. Soil Biology & Biochemistry. 40:2130-2136. Abstract
Broadley MR, White PJ, Hammond JP, Graham NS, Bowen HC, Emmerson ZF, Fray RG, Iannetta PPM, McNicol JW, May ST.  2008.  Evidence of neutral transcriptome evolution in plants. New Phytologist. 180:587-593. Abstract
Clayton SJ, Read DB, Murray PJ, Gregory PJ.  2008.  Exudation of alcohol and aldehyde sugars from roots of defoliated Lolium perenne L. grown under sterile conditions. Journal of Chemical Ecology. 34:1411-1421. Abstract
Griffiths BS, Hallett PD, Kuan HL, Gregory AS, Watts CW, Whitmore AP.  2008.  Functional resilience of soil microbial communities depends on both soil structure and microbial community composition. Biology and Fertility of Soils. 44:745-754. Abstract
Coucheney E, Daniell TJ, Chenu C, Nunan N.  2008.  Gas chromatographic metabolic profiling: A sensitive tool for functional microbial ecology. Journal of Microbiological Methods. 75:491-500. Abstract
Begg GS, Elliott MJ, Cullen DW, Iannetta PPM, Squire GR.  2008.  Heterogeneity in the distribution of genetically modified and conventional oilseed rape within fields and seed lots. Transgenic Research. 17:805-816. Abstract
Qi Z, Hampton CR, Shin R, Barkla BJ, White PJ, Schachtman DP.  2008.  The high affinity K+ transporter AtHAK5 plays a physiological role in planta at very low K+ concentrations and provides a caesium uptake pathway in Arabidopsis. Journal of Experimental Botany. 59:595-607. Abstract
Opik M, Moora M, Zobel M, Saks U, Wheatley RE, Wright F, Daniell TJ.  2008.  High diversity of arbuscular mycorrhizal fungi in a boreal, herb-rich, coniferous forest. New Phytologist. 179:867-876. Abstract
Yoshida S, Hallett PD.  2008.  Impact of hydraulic suction history on crack growth mechanics in soil. Water Resources Research. 44:-W00C01. Abstract
Zhang B, Hallett PD, Zhang G.  2008.  Increase in the fracture toughness and bond energy of clay by a root exudate. European Journal of Soil Science. 59:855-862. Abstract
Karley AJ, Hawes C, Iannetta PPM, Squire GR.  2008.  Intraspecific variation in Capsella bursa-pastoris in plant quality traits for insect herbivores. Weed Research. 48:147-156. Abstract
Abdullahi YA, Akunna JC, White NA, Hallett PD, Wheatley RE.  2008.  Investigating the effects of anaerobic and aerobic post-treatment on quality and stability of organic fraction of municipal solid waste as soil amendment. Bioresource Technology. 99:8631-8636. Abstract
Bishop HO, Grieve IC, Chudek JA, Hopkins DW.  2008.  Liming upland grassland: The effects on earthworm communities and the chemical characteristics of carbon in casts. European Journal of Soil Science. 59:526-531. Abstract
Wheaton AD, McKenzie BM, Tisdall JM.  2008.  Management to increase the depth of soft soil improves soil conditions and grapevine performance in an irrigated vineyard. Soil and Tillage Research. 98:68-80. Abstract
Dennis PG, Miller AJ, Clark IM, Taylor RG, Valsami-Jones E, Hirsch PR.  2008.  A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
Wang J, Zhang X, Bengough AG, Crawford JW.  2008.  Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation. International Journal of Numerical Methods for Heat & Fluid Flow. 18:656-672. Abstract
Bohanec M, Mess A, Scatasta S, Angevin F, Griffiths BS, Krogh PH, Znidars M, Dzeroski S.  2008.  A qualitative multi-attribute model for economic and ecological assessment of genetically modified crops. Ecological Modelling. 215:247-261. Abstract
Hopkins DW, Sparrow AD, Gregorich EG, Novis P, Elberling B, Greenfield LG.  2008.  Redistributed lacustrine detritus as a spatial subsidy of biological resources for soils in an Antarctic dry valley. Geoderma. 144:86-92. Abstract
Debeljak M, Squire GR, Demsar D, Young MW, Dzeroski S.  2008.  Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
Singh BK, Nunan N, Ridgway KP, McNicol JW, Young JPW, Daniell TJ, Prosser JI, Millard P.  2008.  Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10:534-541. Abstract
Griffiths BS, Liu Q, Wang H, Zhang B, Kuan HL, McKenzie BM, Hallett PD, Neilson R, Daniell TJ.  2008.  Restoration of soil physical and biological stability are not coupled in response to plants and earthworms. Ecological Restoration. 26:102-104. Abstract
Ingram JSI, Gregory PJ, Izac AM.  2008.  The role of agronomic research in climate change and food security policy. Agriculture, Ecosystems and Environment. 126:4-12. Abstract
Mahmood-ul-Hassan M, Gregory PJ.  2008.  The role of rainfall intensity and soil in determining rates of flow through cryoturbated chalk. Pakistan Journal of Science and Industrial Research. 51:235-241.
Bahar B, Schmidt O, Moloney AP, Scrimgeour CM, Begley IS, Monahan FJ.  2008.  Seasonal variation in the C, N and S stable isotope composition of retail organic and conventional Irish beef. Food Chemistry. 106:1299-1305. Abstract
Holeva RC, Brown DJF, Curtis RHC, Neilson R.  2008.  Selective recovery of the virus-vector trichodorid nematode Paratrichodorus anemones from soil samples by immunomagnetic capture. European Journal of Plant Pathology. 120:85-89. Abstract
Broadley MR, Hammond JP, King GJ, Astley D, Bowen HC, Meacham MC, Mead A, Pink DAC, Teakle G, Hayden R et al..  2008.  Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea. Plant Physiology. 146:1707-1720. Abstract
Griffiths BS, Caul S, Thompson J, Hackett CA, Cortet J, Pernin C, Krogh PH.  2008.  Soil microbial and faunal responses to herbicide tolerant maize and herbicide in two soils. Plant and Soil. 308:93-103. Abstract
Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA.  2008.  Soil microbial respiration in arctic soil does not acclimate to temperature. Ecology Letters. 11:1092-1100. Abstract
Mahmood-ul-Hassan M, Akhtar MS, Gregory PJ.  2008.  Solute movement through intact columns of cryoturbated Upper Chalk. Hydrological Processes. 22:2086-2093. Abstract
Orfanus T, Bedrna Z, Lichner L, Hallett PD, Knava K, Sebin M.  2008.  Spatial variability of water repellency in pine forest soil. Soil and Water. 3:S123-S129. Abstract
Shillam LL, Hopkins DW, Badalucco L, Laudicina VA.  2008.  Structural diversity and enzyme activity of volcanic soils at different stages of development and response to experimental disturbance. Soil Biology & Biochemistry. 40:2182-2185. Abstract
Hammond JP, White PJ.  2008.  Sucrose transport in the phloem; integrating root responses to phosphorus starvation. Journal of Experimental Botany. 59:93-109. Abstract
Garc R, Ochoa V, Hinojosa MB, Carreira JA.  2008.  Suitability of enzyme activities for the monitoring of soil quality improvement in organic agricultural systems. Soil Biology & Biochemistry. 40:2137-2145. Abstract
Tilston EL, Halpin C, Hopkins DW.  2008.  Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere. Biology and Fertility of Soils. 44:897-901. Abstract
Johnson SN, Anderson EA, Dawson G, Griffiths DW.  2008.  Varietal susceptibility of potatoes to wireworm herbivory. Agricultural and Forest Entomology. 10:167-174. Abstract
2009
Bowen SR, Gregorich EG, Hopkins DW.  2009.  Biochemical properties and biodegradation of dissolved organic matter from soils. Biology and Fertility of Soils. 45:733-742. Abstract
Subbarao GV, Kishii M, Nakahara K, Ishikawa T, Ban T, Tsujimoto H, George TS, Berry WL, Hash CT, Ito O.  2009.  Biological nitrification inhibition (BNI) - Is there potential for genetic interventions in Triticeae? Breeding Science. 59:529-545.
Hillier J, Hawes C, Squire GR, Hilton A, Wale S, Smith P.  2009.  The carbon footprints of food crop production. International Journal of Agicultural Sustainability. 7:107-118.
Hudacsek P, Bransby MF, Hallett PD, Bengough AG.  2009.  Centrifuge modelling of climatic effects on clay embankments. Proceedings of the Institution of Civil Engineers - Engineering Sustainability. 162:91-100.
Koza A, Hallett PD, Moon CD, Spiers AJ.  2009.  Characterisation of a novel air-liquid interface biofilm of Pseudomonas fluorescens SBW25. Microbiology. 155:1397-1406.
Squire GR, Hawes C, Begg GS, Young MW.  2009.  Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract
McKenzie BM, Bengough AG, Hallett PD, Thomas WTB, Forster BP, McNicol JW.  2009.  Deep rooting and drought screening of cereal crops: A novel field-based method and its application.. Field Crops Research. 112:165-171. Abstract
Newton AC, Begg GS, Swanston JS.  2009.  Deployment of diversity for enhanced crop function. Annals of Applied Biology. 154:309-322. Abstract
Stokes A, Atger C, Bengough AG, Fourcaud T, Sidle RC.  2009.  Desirable plant root traits for protecting natural and engineered slopes against landslides (Invited review). Plant and Soil. 324:1-30.
Uibopuu A, Moora M, Saks U, Daniell TJ, Zobel M, Opik M.  2009.  Differential effect of arbuscular mycorrhizal fungal communities from ecosystems along management gradient on the growth of forest understorey plant species. Soil Biology & Biochemistry. 41:2141-2146.
Hallett PD, Feeney D, Bengough AG, Rillig MC, Scrimgeour CM, Young IM.  2009.  Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract
Barr P, McKenzie BM, Hallett PD.  2009.  Earthworms bring compacted and loose soils to a similar mechanical state. Soil Biology & Biochemistry. 41:656-658. Abstract
Yang D, Zhang T, Zhang K, Greenwood DJ, Hammond JP, White PJ.  2009.  An easily implemented agro-hydrological procedure with dynamic root simulation for water transfer in the crop-soil system: Validation and application. Journal of Hydrology. 370:177-190. Abstract
Wookey PA, Aerts R, Bardgett RD, Baptist F, Brathan KA, Cornelissen JHC, Gough L, Hartley IP, Hopkins DW, Lavorerl S et al..  2009.  Ecosystem feedbacks and cascade processes: understanding their role in the responses of Arctic and alpine ecosystems to environmental change. Global Change Biology. 15:1153-1172. Abstract
Pawlett M, Hopkins DW, Moffett BF, Harris JA.  2009.  The effect of earthworms and liming on soil microbial communities. Biology and Fertility of Soils. 45:361-369. Abstract
Gregory AS, Watts CW, Griffiths BS, Hallett PD, Kuan HL, Whitmore AP.  2009.  The effect of long-term soil management on the physical and biological resilience of a range of arable and grassland soils in England. Geoderma. 153:172-185.
Wojciechowski T, Gooding MJ, Ramsay L, Gregory PJ.  2009.  The effects of dwarfing genes on seedling root growth of wheat. Journal of Experimental Botany. 60:2565-2573.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.