Skip to navigation Skip to content

Publications list

Found 417 results

Filters: Keyword is LS  [Clear All Filters]
2008
Denoys-Rothan B, Chartier P, Petit A, Gordon S, Graham J, Dolan A, Hofer M, Faedi W, Malteni M, Baruzzi G et al..  2008.  Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.
Obert B, Middlefell-Williams J, Millam S.  2008.  Genetic transformation of barley microspores using anther bombardment. Biotechnology Letters. 30:945-949. Abstract
Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EGJ, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC et al..  2008.  Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.
Cuesta-Marcos A, Igartua E, Ciudad FJ, Codesal P, Russell JR, Molina-Cano J-L, Moralejo MA, Sz P, Gracia MP, Lasa JM et al..  2008.  Heading date QTL in a spring x winter barley cross evaluated in Mediterranean environments. Molecular Breeding. 21:455-471. Abstract
Qi Z, Hampton CR, Shin R, Barkla BJ, White PJ, Schachtman DP.  2008.  The high affinity K+ transporter AtHAK5 plays a physiological role in planta at very low K+ concentrations and provides a caesium uptake pathway in Arabidopsis. Journal of Experimental Botany. 59:595-607. Abstract
Duncan SH, Lobley GE, Holtrop G, Ince J, Johnstone AM, Louis P, Flint HJ.  2008.  Human colonic microbiota associated with diet, obesity and weight loss. International Journal of Obesity. 32:1720-1724.
Lees AK, van de Graaf P, Wale S.  2008.  The identification and detection of Spongospora subterranea and factors affecting infection and disease. American Journal of Potato Research. 85:247-252. Abstract
Woodhead M, McCallum S, Smith K, Cardle L, Mazzitelli L, Graham J.  2008.  Identification, characterisation and mapping of simple sequence repeat (SSR) markers from raspberry root and bud ESTs. Molecular Breeding. 22:555-563. Abstract
Hughes V, Bannantine JP, Denham S, Smith S, Garcia-Sanchez A, Sales J, Paustian ML, McLean K, Stevenson K.  2008.  Immunogenicity of proteome-determined Mycobacterium avium subsp paratuberculosis-specific proteins in sheep with Paratuberculosis. Clinical and Vaccine Immunology. 15:1824-1833.
Raven JA, Giordano M, Beardall J.  2008.  Insights into the evolution of CCMs from comparisons with other resource acquisition and assimilation processes. Physiologia Plantarum. 133:4-14. Abstract
Kerenyi Z, Merai Z, Hiripi L, Benkovics A, Gyula P, Lacomme C, Barta E, Nagy F, Silhavy D.  2008.  Inter-kingdom conservation of mechanism of nonense-mediated mRNA decay. EMBO Journal. 27:1585-1595.
Brown JWS, Marshall DF, Echeverria M.  2008.  Intronic noncoding RNAs and splicing. Trends in Plant Science. 13:335-342. Abstract
Baxter EM, Jarvis S, D'Eath RB, Ross DW, Robson SK, Farish M, Nevison IM, Lawrence AB, Edwards SA.  2008.  Investigating the behavioural and physiological indicators of neonatal survival in pigs. Theriogenology. 69:773-783. Abstract
Lyons M, Cardle L, Rostoks N, Waugh R, Flavell AJ.  2008.  Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome. Molecular Genetics and Genomics. 280:275-285. Abstract
Butler A, Glasbey CA.  2008.  A latent Gaussian model for compositional data with zeros. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:505-520. Abstract
Selman C, McLaren JS, Mayer CD, Duncan JS, Collins AR, Duthie GG, Redman P, Speakman JR.  2008.  Lifelong, . Rejuvenation Research. 11:83-95. Abstract
Whybrow S, Horgan GW, Stubbs RJ.  2008.  Low-energy reporting and duration of recording period. European Journal of Clinical Nutrition. 62:1148-1150. Abstract
Fowler PA, Cassie S, Rhind SM, Brewer MJ, Collinson JM, Lea RG, Baker PJ, Bhattacharya S, O'Shaughnessy PJ.  2008.  Maternal smoking during pregnancy specifically reduces human fetal desert hedgehog gene expression during testis development. Journal of Clinical Endocrinology and Metabolism. 93:619-626. Abstract
Solomon-Blackburn RM, Nikan J, Barker H.  2008.  Mechanism of strong resistance to Potato leafroll virus infection in a clone of potato (Solanum tuberosum). Annals of Applied Biology. 152:339-347. Abstract
Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.  2008.  Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract
Grzegorczyk M, Husmeier D, Edwards KD, Ghazal P, Millar AJ.  2008.  Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract
Morris WL, Ducreux LJM, Bryan GJ, Taylor MA.  2008.  Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.
Sharma SK, Millam S, Hedley PE, McNicol JW, Bryan GJ.  2008.  Molecular regulation of somatic embryogenesis in potato: an auxin led perspective. Plant Molecular Biology. 68:185-201. Abstract
Nonyane BAS, Theobold CM.  2008.  Multiplicative models for combining information from several sensory experiments: A Bayesian analysis. Food Quality and Preference. 19:260-266. Abstract
Raven JA.  2008.  Not drowning but photosynthesising probing plant plastrons. New Phytologist. 177:841-845. Abstract
Baccini M, Bachmaier EM, Biggeri A, Boekschoten MV, Bouwman FG, Brennan L, Caesar R, Cinti S, Coort SL, Crosley K et al..  2008.  The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
Guilioni L, Jones HG, Leinonen I, Lhomme JP.  2008.  On the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology. 148:1908-1912.
Yahiaoui S, Igartua E, Moralejo M, Ramsay L, Molina-Cano J-L, Ciudad FJ, Lasa JM, Gracia MP, Casas AM.  2008.  Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
Mostowfizadeh-Ghalamfarsa R, Cooke DEL, Banihashemi Z.  2008.  Phytophthora parsiana sp. nov., a new high-temperature tolerant species. Mycological Research. 112:783-794. Abstract
Lambers H, Raven JA, Shaver GR, Smith SE.  2008.  Plant nutrient-acquisition strategies change with soil age. Trends in Ecology and Evolution. 23:94-103. Abstract
Harrison BD.  2008.  Plant virology in the 20th century. Phytopathology. 98, Supplement:S193-S194. Abstract
Riepsamen AH, Blok VC, Phillips MS, Gibson T, Dowton M.  2008.  Poly(T) variation within mitochondrial protein-coding genes in Globodera (Nematoda : Heteroderidae). Journal of Molecular Evolution. 66:197-209. Abstract
Iglesias-Rodriguez MD, Buitenhuis ET, Raven JA, Schofield O, Poulton AJ, Gibbs S, Halloran PR, de Baar HJW.  2008.  Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
Nart P, Naylor SW, Huntley JF, McKendrick IJ, Gally DL, Low JC.  2008.  Responses of cattle to gastrointestinal colonization by Escherichia coli O157:H7. Infection and Immunity. 76:5366-5372. Abstract
Brown JWS, Shaw PJ.  2008.  The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.
Holeva RC, Brown DJF, Curtis RHC, Neilson R.  2008.  Selective recovery of the virus-vector trichodorid nematode Paratrichodorus anemones from soil samples by immunomagnetic capture. European Journal of Plant Pathology. 120:85-89. Abstract
Jones MR, Raven JA, Leith ID, Cape JN, Smith RI, Fowler D.  2008.  Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology. 148:893-901. Abstract
Glasbey CA, Allcroft DJ.  2008.  A spatiotemporal auto-regressive moving average model for solar radiation. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:343-355. Abstract
Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D et al..  2008.  The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract
McDougall GJ, Martinussen I, Stewart D.  2008.  Towards fruitful metabolomics: High throughput analyses of polyphenol composition in berries using direct infusion mass spectrometry. Journal of Chromatography B. 871:362-369. Abstract
Raven JA.  2008.  Transpiration: how many functions? New Phytologist. 179:905-908. Abstract
Simpson CG, Brown JWS.  2008.  U12-dependent intron splicing in plants. Current Topics in Microbiology and Immunology. 326:61-82.
Titlyanov EA, Kiyashko SI, Titlyanova TV, Kalita TL, Raven JA.  2008.  δ13C and δ15N values in reef corals Porites lutea and P. cylindrica and in their epilithic and endolithic algae. Marine Biology. 155:353-361. Abstract
2009
Kim S-H, Koroleva OA, Lewandowska D, Pendle AF, Clark GP, Simpson CG, Shaw PJ, Brown JWS.  2009.  Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus. Plant Cell. 21:2045-2057.
Russell JR, Kadu CAC, Jamnadass R, Booth A, Cordeiro NJ, Woodhead M, Dawson IK.  2009.  AFLP and SSR diversity in the African fruit tree Allanblackia: implications for management of a genus newly subject to domestication for the edible oil industry. Tree Genetics and Genomes. 5:517-527.
Beardall J, Allen D, Bragg J, Finkel ZV, Flynn KJ, Quigg A, Rees TAV, Richardson A, Raven JA.  2009.  Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton. New Phytologist. 181:295-309.
Antunez-Lamas M, Cabrera E, Lopez-Solanilla E, Solano R, Gonzalez-Melendi P, Chico JM, Toth IK, Birch PRJ, Pritchard L, Liu H et al..  2009.  Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues. Molecular Microbiology. 74:662-671.
Lewis FI, Gunn GJ, McKendrick IJ, Murray FM.  2009.  Bayesian inference for within-herd prevalence of Leptospira interrogans serovar Hardjo using bulk milk antibody testing. Biostatistics. 10:719-728.
McDougall GJ, Kulkarni NN, Stewart D.  2009.  Berry polyphenols inhbit pancreatic lipase actvity in vitro. Food Chemistry. 115:193-199. Abstract
Eaton SL, Anderson MJ, Hamilton S, Gonz L, Sales J, Jeffrey M, Reid HW, Rocchi MA, Chianini F.  2009.  CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.
Prashar A, Hocking PM, Erichsen JT, Fan Q, Saw S-M, Guggenheim JA.  2009.  Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.
Barker H, McGeachy KD, Toplak N, Gruden K, Zel J, Browning I.  2009.  Comparison of genome sequence of PVY isolates with biological properties. American Journal of Potato Research. 86:227-238.
Van Toor R, Malloch G, Fenton B.  2009.  A concept for management of virus-vectors and insecticide resistance in Myzus persicae on potatoes. Redia. XCII:219-221.
Cockell CS, L A, Fridlund M, Herbst TM, Kaltenegger L, Absil O, Beichman C, Benz W, Blanc M, Brack A et al..  2009.  Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
Bartley PM, Wright SE, Maley SW, Buxton D, Nath M, Innes EA.  2009.  The development of immune responses in Balb/c mice following inoculation with attenuated or virulent Neospora caninum tachyzoites. Parasite Immunology. 31:392-401.
Koroleva OA, Calder G, Pendle AF, Kim S-H, Lewandowska D, Simpson CG, Jones IM, Brown JWS, Shaw PJ.  2009.  Dynamic behaviour of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. Plant Cell. 21:1592-1606.
Ramirez-Farias C, Slezak K, Fuller Z, Duncan A, Holtrop G, Louis P.  2009.  Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. British Journal of Nutrition. 101:541-550.
Wemelsfelder F, Nevison IM, Lawrence AB.  2009.  The effect of perceived environmental background on qualitative assessments of pig behaviour. Animal Behaviour. 78:477-484.
Brown KL, Wathne GJ, Sales J, Bruce ME, Mabbott NA.  2009.  The effects of host age on follicular dendritic cell status dramatically impair scrapie agent neuroinvasion in aged mice. Journal of Immunology. 183:5199-5207.
Glasbey CA, Khondoker MR.  2009.  Efficiency of functional regression estimators for combining multiple laser scans of cDNA microarrays. Biometrical Journal. 51:45-55.
Waugh R, Jannink JL, Muehlbauer GJ, Ramsay L.  2009.  The emergence of whole genome association scans in barley. Current Opinion in Plant Biology. 12:218-222.
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2009.  Erratum: Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 154:1019-1019.
Cornulier T, Elston DA, Arcese P, Benton TG, Douglas DJT, Lambin X, Reid J, Robinson RA, Sutherland WJ.  2009.  Estimating the annual number of breeding attempts from breeding dates using mixture models. Ecology Letters. 12:1184-1193.
Thiel T, Graner A, Waugh R, Grosse I, Close TJ, Stein N.  2009.  Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. BMC Evolutionary Biology. 9:-209.
Lokossou AA, Park TH, van Arkel G, Arens M, Ruyter-Spira C, Morales J, Whisson SC, Birch PRJ, Visser RGF, Jacobsen E et al..  2009.  Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV. Molecular Plant-Microbe Interactions. 22:630-641.
Low JC, Chambers J, McKelvey WAC, McKendrick IJ, Jeffrey M.  2009.  Failure to transmit scrapie infection by transferring preimplantation embryos from naturally infected donor sheep. Theriogenology. 72:809-816.
Osterrieder A, Carvalho CM, Latijnhouwers M, Johansen JN, Stubbs C, Botchway S, Hawes CL.  2009.  Fluorescence lifetime imaging of interactions between Golgi tethering factors and small GTPases in plants. Traffic. 10:1034-1046.
Raven JA.  2009.  Functional evolution of photochemical energy transformations in oxygen-producing organisms. Functional Plant Biology. 36:505-515.
Bierman S, Glasbey CA.  2009.  A graphical method for dating chicks using bivariate body measurements. Journal of Agricultural, Biological and Environmental Statistics. 14:443-451.
Madsen CT, Stephens J, Hornyik C, Shaw J, Collinge DB, Lacomme C, Albrechtsen M.  2009.  Identification and characterization of barley RNA-directed RNA polymerases. Biochimica et Biophysica Acta. 1789:375-385.
Maberly SC, Ball LA, Raven JA, S D.  2009.  Inorganic carbon acquisition by chrysophytes. Journal of Phycology. 45:1052-1061.
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Inter- and intra-specific exposure to parasites and pathogens via the faecal-oral route: a consequence of behaviour in a patchy environment. Epidemiology and Infection. 137:630-643.
Mahajan A, Currie CG, Mackie S, Tree J, McAteer S, McKendrick I, McNeilly TN, Roe A, La Ragione RM, Woodward MJ et al..  2009.  An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157:H7 with bovine intestinal epithelium. Cellular Microbiology. 11:121-137.
Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ.  2009.  Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Livestock grazing behavior and inter- versus intraspecific disease risk via the fecal-oral route. Behavioral Ecology. 20:426-432.
Koroleva OA, Brown JWS, Shaw PJ.  2009.  Localization of eIF4A-III in the nucleolus and splicing speckles is an indicator of plant stress. Plant Signaling & Behavior. 4:1148-1151.
Baggaley NJ, Langan SJ, Futter MN, Potts JM, Dunn SM.  2009.  Long-term trends in hydro-climatology of a major Scottish mountain river. Science of the Total Environment. 407:4633-4641.
Vinten AJA, Potts JM, Avery L, Strachan NJC.  2009.  Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3:744-752.
Butler A, Doherty RM, Marion G.  2009.  Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
Blower TR, Fineran PC, Johnson MJ, Toth IK, Humphreys DP, Salmond GPC.  2009.  Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
Moir HJ, Gibbins CN, Buffington JM, Webb JH, Soulsby C, Brewer MJ.  2009.  A new method to identify the fluvial regimes used by spawning salmonids. Canadian Journal of Fisheries and Aquatic Sciences. 66:1404-1408.
Andrews M, Lea PJ, Raven JA, Azevedo RA.  2009.  Nitrogen use efficiency. 3. Nitrogen fixation: genes and costs. Annals of Applied Biology. 155:1-13.
Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al..  2009.  Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
Hein I, Birch PRJ, Danan S, Lefebvre V, Odeny DA, Gebhardt C, Trognitz F, Bryan GJ.  2009.  Progress in mapping and cloning qualitative and quantitative resistance against Phytophthora infestans in potato and its wild relatives. Potato Research. 52:215-227.
Hancock RD.  2009.  Recent patents on vitamin C: Opportunities for crop improvement and single-step biological manufacture. Recent Patents on Food, Nutrition and Agriculture. 1:39-49. Abstract
Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C.  2009.  Reconstruction of monocotyledonous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences, USA. 106:14908-14913.
Spezia L.  2009.  Reversible jump and the label switching problem in hidden Markov models. Journal of Statistical Planning and Inference. 139:2305-2315.
Lawson DJ, Jensen HJ.  2009.  The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology. 257:696-703.
Crampton BG, Hein I, Berger DK.  2009.  Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
Lehrach WP, Husmeier D.  2009.  Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
Visser RGF, Bachem CWB, de Boer JM, Bryan GJ, Chakrabati SK, Feingold S, Gromadka R, van Ham RCHJ, Huang SW, Jacobs JME et al..  2009.  Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.
Bradshaw JE, Titley M, Wilson RN.  2009.  Single seed descent as a breeding method for swedes (Brassica napus L. var. napobrassica Peterm). Euphytica. 169:387-401.
Polechov J, Barton N, Marion G.  2009.  Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
Ki LP, Felber F, Flavell AJ, Guadagnuolo R, Guiatti D, Hauser TP, Olivieri AM, Scotti I, Syed NH, Vischi M et al..  2009.  Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
Pearce MC, Chase-Topping ME, McKendrick IJ, Mellor DJ, Locking ME, Allison L, Ternent HE, Matthews L, Knight HI, Smith AW et al..  2009.  Temporal and spatial patterns of bovine Escherichia coli O157 prevalence and comparison of temporal changes in the patterns of phage types associated with bovine shedding and human E. coli O157 cases in Scotland between 1998-2000 and 2002-2004. BMC Microbiology. 9:-276.
Wright HW, Bartley K, Nisbet AJ, McDevitt RM, Sparks NHC, Brocklehurst S, Huntley JF.  2009.  The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.
Hurd CL, Hepburn CD, Currie KI, Raven JA, Hunter KA.  2009.  Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.
Jones HG, Serraj R, Loveys BR, Xiong LH, Wheaton A, Price AH.  2009.  Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
Goodall N, Kisiswa L, Prashar A, Faulkner S, Tokarczuk P, Singh K, Erichsen JT, Guggenheim J, Halfter W, Wride MA.  2009.  Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F.  2009.  TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics. 25:126-127.
Potokina E, Druka A, Kearsey MJ.  2009.  Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
van Dijk JP, Cankar K, Scheffer SJ, Beenen HGJ, Shepherd LVT, Stewart D, Davies HV, Wilcockson SJ, Leifert C, Gruden K et al..  2009.  Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract
Bahar B, Moloney AP, Monahan FJ, Harrison SM, Zazzo A, Scrimgeour CM, Begley IS, Schmidt O.  2009.  Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
Glasbey CA.  2009.  Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
Davidson RS, Marion G, White PCL, Hutchings MR.  2009.  Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan GW, Johnson IT, Mariman EC, Elliott RM et al..  2009.  Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes and Nutrition. 4:95-102.
2010
Christensen NM, Oparka KJ, Tilsner J.  2010.  Advances in imaging RNA in plants. Trends in Plant Science. 15:196-203.
Sprent JI, Odee DW, Dakora FD.  2010.  African legumes: A vital but under-utilised resource. Journal of Experimental Botany. 61:1257-1265.
Schornack S, Van Damme M, Bozkurt TO, Cano LM, Smoker M, Thines M, Gaulin E, Kamoun S, Huitema E.  2010.  Ancient class of translocated oomycete effectors targets the host nucleus. Proceedings of the National Academy of Sciences, USA. 107:17421-17426.
Reyers B, Pettorelli N, Katzner T, Gompper ME, Redpath S, Garner TWJ, Altwegg R, Reed DH, Gordon IJ.  2010.  Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13:523-525.
Navajas EA, Glasbey CA, Fisher AV, Ross DW, Hyslop JJ, Richardson RI, Simm G, Roehe R.  2010.  Assessing beef carcass tissue weights using computed tomography spirals of primal cuts. Meat Science. 84:30-38.
Watkins C, Schock A, May L, Denham S, Sales J, Welch L, Sharp JM, Stevenson K.  2010.  Assessing virulence of vaccine strains of Mycobacterium avium subspecies paratuberculosis in a calf model. Veterinary Microbiology. 146:63-69.
Gomez LD, Whitehead C, Barakate A, Halpin C, McQueen-Mason SJ.  2010.  Automated saccharification assay for determination of digestibility in plant materials. Biotechnology for Biofuels. 3:-23.
Karunakaran R, Haag AF, East AK, Ramachandran VK, Prell J, James EK, Scocchi M, Ferguson GP, Poole PS.  2010.  BacA is essential for bacteroid development in nodules of galegoid, but not phaseoloid, legumes. Journal of Bacteriology. 192:2920-2928.
Spezia L.  2010.  Bayesian analysis of multivariate Gaussian hidden Markov models with an unknown number of regimes. Journal of Time Series Analysis. 31:1-11.
Hallett PD, Lichner L, Cerda A.  2010.  Biohydrology: coupling biology and soil hydrology from pores to landscapes preface. Ecohydrology. 3:379-381.
Duthie SJ, Horgan GW, de Roos B, Rucklidge GJ, Reid M, Duncan G, Pirie L, Basten GP, Powers HJ.  2010.  Blood folate status and expression of proteins involved in immune function, inflammation and coagulation: Biochemical and proteomic changes in the plasma of humans in response to long-term synthetic folic acid supplementation. Journal of Proteome Research. 9:1941-1950.
Pacak A, Strozycki PM, Barciszewska-Pacak M, Alejska M, Lacomme C, Jarmolowski A, Szweykowska-Kulinska Z, Figlerowicz M.  2010.  The brome mosaic virus-based recombination vector triggers a limited gene silencing response depending on the orientation of the inserted sequence. Archives of Virology. 155:169-179.
Bontemps C, Elliott GN, Simon MF, Dos Reis J FB, Gross E, Lawton RC, Neto NE, Loureiro MdeF, de Faria SM, Sprent JI et al..  2010.  Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
Jones HG.  2010.  Can water droplets on leaves cause leaft scorch? New Phytologist. 185:865-867.
Dagleish MP, Finlayson J, Bayne C, MacDonald S, Sales J, Hodgson JC.  2010.  Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.
Elderfield H, Riebesell U, Raven JA, Gattuso JP, Lipps J.  2010.  Closure threat to key museum research facility. Nature. 465:-1005.
Denwood MJ, Reid SWJ, Love S, Nielsen MK, Matthews L, McKendrick IJ, Innocent GT.  2010.  Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.
Raven JA.  2010.  Cyanotoxins: A poison that frees phosphate. Current Biology. 20:R850-R852.
Berdeaux O, Gregoire S, Fournier C, Christie WW, Lambelet P, S JL.  2010.  Detection of lactobacillic acid in low erucic rapeseed oil - A note of caution when quantifying cyclic fatty acid monomers in vegetable oils. Chemistry and Physics of Lipids. 163:698-702.
Moloney C, Griffin D, Jones PW, Bryan GJ, McLean K, Bradshaw JE, Milbourne D.  2010.  Development of diagnostic markers for use in breeding potatoes resistance to Globodera pallida pathotype Pa2/3 using germplasm derived from Solanum tuberosum ssp. andigena CPC 2802. Theoretical and Applied Genetics. 120:679-689.
Ievina N, Syed NH, Flavell AJ, Ievinsh G, Rostoks N.  2010.  Development of retrotransposon-based SSAP molecular marker system for study of genetic diversity in sea holly (Eryngium maritimum L.). Plant Genetic Resources - Characterization and Utilization. 8:258-266.
Dagleish MP, Hamilton S, Gonz L, Eaton SL, Steele PJ, Finlayson J, Sis S, Pang YP, Sales J, Chianini F et al..  2010.  Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.
Louis P, Young P, Holtrop G, Flint HJ.  2010.  Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environmental Microbiology. 12:304-314.
Tighe P, Duthie GG, Vaughan N, Brittenden J, Simpson WG, Duthie S, Mutch W, Wahle K, Horgan GW, Thies F.  2010.  Effect of increased consumption of whole-grain foods on blood pressure and other cardiovascular risk markers in healthy middle-aged persons: a randomised controlled trial. American Journal of Clinical Nutrition. 94:733-740.
Ouellet DR, Berthiaume R, Holtrop G, Lobley GE, Martineau R, Lapierre H.  2010.  Effect of method of conservation of timothy on endogenous nitrogen flows in lactating dairy cows. Journal of Dairy Science. 93:4252-4261.
Smith LA, Wells KL, Marion G, Swain DL, Hutchings MR.  2010.  Effects of group composition on the grazing behaviour of herbivores. Animal Behaviour. 80:527-534.
Chen XW, Hackett CA, Niks RE, Hedley PE, Booth C, Druka A, Marcel TC, Vels A, Bayer M, Milne I et al..  2010.  An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One. 5:-e8598.
Casa R, Baret F, Buis S, Lopez-Lozano R, Pascucci S, Palombo A, Jones HG.  2010.  Estimation of maize canopy properties from remote sensing by inversion of 1-D and 4-D models. Precision Agriculture. 11:319-334.
Fyfe CL, Stewart J, Murison SD, Jackson DM, Rance K, Speakman JR, Horgan GW, Johnstone AM.  2010.  Evaluating energy intake measurement in free-living subjects: when to record and for how long? Public Health Nutrition. 13:172-180.
Raven JA, Andrews M.  2010.  Evolution of tree nutrition. Tree Physiology. 30:1050-1071.
Tattersall RJ, Prashar A, Singh KD, Tokarczuk PF, Erichsen JT, Hocking PM, Guggenheim JA.  2010.  Ex vivo magnetic resonance imaging of crystalline lens dimensions in chicken. Molecular Vision. 16:144-153.
Druka A, Potokina E, Luo ZW, Jiang N, Chen XW, Kearsey MJ, Waugh R.  2010.  Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.
Berepiki A, Lichius A, Shoji JY, Tilsner J, Read ND.  2010.  F-actin dynamics in Neurospora crassa. Eukaryotic Cell. 9:547-557.
Porter JR, Challinor A, Ewert F, Falloon P, Fischer T, Gregory PJ, Van Ittersum MK, Olesen JE, Moore KJ, Rosenzweig C et al..  2010.  Food security: focus on agriculture. Science. 328:172-173.
Zakri AM, Ziegler A, Torrance L, Fischer R, Commandeur U.  2010.  Generation and characterisation of a scFv against recombinant coat protein of the geminivirus Tomato leaf curl New Delhi virus. Archives of Virology. 155:335-342.
De Maayer P, Chan WY, Venter SN, Toth IK, Birch PRJ, Joubert F, Coutinho TA.  2010.  Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
Cockram J, White J, Zuluaga D, Smith D, Comadran J, Macaulay M, Luo ZW, Kearsey MJ, Werner P, Harrap D et al..  2010.  Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.
Yang S, Peng Q, Zhang Q, Zou L, Li Y, Robert C, Pritchard L, Liu H, Hovey R, Wang Q et al..  2010.  Genome-wide identifiction of HrpL-regulated genes in the necrotrophic phytopathogen Dickeya dadantii 3937. PLoS One. 5:-e13472.
Bessell PR, Matthews L, Smith-Palmer A, Rotariu O, Strachan NJC, Forbes KJ, Cowden J, Reid SWJ, Innocent GT.  2010.  Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health. 10:-423.
Gadd GM, Raven JA.  2010.  Geomicrobiology of eukaryotic microorganisms. Geomicrobiology Journal. 27:491-519.
Raven JA, Thomas H.  2010.  Grasses. Current Biology. 20:R837-R839.
Nowara D, Gay A, Lacomme C, Shaw J, Ridout C, Douchkov D, Hensel G, Kumlehn J, Schweizer P.  2010.  HIGS: Host-induced gene silencing in the obligate biotrophic fungal pathogen Blumeria graminis. Plant Cell. 22:3130-3141.
Meier-Augenstein W, Kemp HF.  2010.  Human provenancing based on stable isotope forensic intellgence. Science & Justice. 50:35-36.
Grant OM, Tronina L, Ramalho JC, Besson CK, Lobo-Do-Vale R, Pereira JS, Jones HG, Chaves MM.  2010.  The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.
Bek AS, Sauer J, Thygesen MB, Duus JO, Petersen BO, Thirup S, James EK, Jensen KJ, Stougaard J, Radutoiu S.  2010.  Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.
Raven JA.  2010.  Inorganic carbon acquisition by eukaryotic algae: four current questions. Photosynthesis Research. 106:123-134.
Helliwell RC, Britton AJ, Gibbs S, Fisher JM, Potts JM.  2010.  Interactive effects of N deposition, land management and weather patterns on soil solution chemistry in a Scottish alpine heath. Ecosystems. 13:696-711.
Makarov VV, Obraztsova EA, Solovyev AG, Morozov SY, Taliansky ME, Yaminsky IV, Kalinina NO.  2010.  The internal domain of hordeivirus movement protein TGB1 forms in vitro filamentous structures.. Biochemistry (Moscow). 75:752-758.
Faisal A, Dondelinger F, Husmeier D, Beale CM.  2010.  Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
Mitchell RJ, Hester AJ, Campbell CD, Chapman SJ, Cameron CM, Hewison RL, Potts JM.  2010.  Is vegetation composition or soil chemistry the best predictor of the soil microbe community? Plant and Soil. 333:417-430.
Magurran AE, Baillie SR, Buckland ST, Dick JM, Elston DA, Scott EM, Smith RI, Somerfield PJ, Watt AD.  2010.  Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time. Trends in Ecology and Evolution. 25:574-582.
Blum M, Boehler M, Randall E, Young V, Csukai M, Kraus S, Moulin F, Scalliet G, Avrova AO, Whisson SC et al..  2010.  Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.
Rhind SM, Kyle CE, Mackie C, McDonald L, Zhang Z, Duff EI, Bellingham M, Amezaga MR, Mandon-Pepin B, Loup B et al..  2010.  Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
Davies HV, Shepherd LVT, Stewart D, Frank T, R R, Engel K-H.  2010.  Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.
Renberg L, Johansson AI, Shutova T, Stenlund H, Aksmann A, Raven JA, Gardestrom P, Moritz T, Samuelsson G.  2010.  A metabolomic approach to study major metabolite changes during acclimation to limiting CO2 in Chlamydomonas reinhardtii. Plant Physiology. 154:187-196.
Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG et al..  2010.  A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
Preedy K, Schofield PG, Liu S, Matzavinos A, Chaplain MAJ, Hubbard SF.  2010.  Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.
Madsen LH, Tirichine L, Jurkiewicz A, Sullivan JT, Heckmann AB, Bek AS, Ronson CW, James EK, Stougaard J.  2010.  The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.
Oono R, Schmitt I, Sprent JI, Denison RF.  2010.  Multiple evolutionary origins of legume traits leading to extreme rhizobial differentiation. New Phytologist. 187:508-520.
Jamar C, Loffet F, Frettinger P, Ramsay L, Fauconnier ML, du Jardin P.  2010.  NAM-1gene polymorphism and grain protein content in Hordeum. Journal of Plant Physiology. 167:497-501.
Munns R, James RA, Sirault XRR, Furbank RT, Jones HG.  2010.  New phenotyping methods for screening wheat and barley for beneficial responses to water deficit. Journal of Experimental Botany. 61:3499-3507.
Dos Reis J FB, Simon MF, Gross E, Boddey RM, Elliott GN, Neto NE, Loureiro MdeF, de Queiroz LP, Scotti MR, Chen W-M et al..  2010.  Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
Raven JA, Knoll AH.  2010.  Non-skeletal biomineralisation by eukaryotes: Matters of moment and gravity. Geomicrobiology Journal. 27:572-584.
Wheelhouse N, Katzer F, Wright F, Longbottom D.  2010.  Novel chlamydia-like organisms as cause of bovine abortions, UK. Emerging Infectious Diseases. 16:1323-1324.
Mostowfizadeh-Ghalamfarsa R, Panabi F, Banihashemi Z, Cooke DEL.  2010.  Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology. 114:325-339.
Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Schoaei Z, Deal KR, Langridge P.  2010.  Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. BMC Genomics. 11:-382.
Finkel ZV, Beardall J, Flynn KJ, Quigg A, Rees TAV, Raven JA.  2010.  Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
Andrews M, Hodge S, Raven JA.  2010.  Positive plant microbial interactions. Annals of Applied Biology. 157:317-320.
Brulisauer F, Lewis FI, Ganser AG, McKendrick IJ, Gunn GJ.  2010.  The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
Hotchkiss EJ, Dagleish MP, Willoughby K, McKendirck IJ, Finlayson J, Zadoks RN, Newsome E, Brulisauer F, Gunn GJ, Hodgson JC.  2010.  Prevalence of Pasteurella multocida and other respiratory pathogens in the nasal tract of Scottish calves. Veterinary Record. 167:555-560.
Rotariu O, Smith-Palmer A, Cowden J, Bessell PR, Innocent GT, Reid SWJ, Matthews L, Dallas J, Ogden ID, Forbes KJ et al..  2010.  Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
Robinson G, Wright S, Elwin K, Hadfield SJ, Katzer F, Bartley PM, Hunter PR, Nath M, Innes EA, Chalmers RM.  2010.  Re-description of Cryptosporidium cuniculus Inman and Takeuchi 1979 (Apicomplexa:Cryptosporidiidae): morphology, biology and phylogeny. International Journal for Parasitology. 40:1539-1548.
Oliva R, Win J, Raffaele S, Boutemy L, Bozkurt TO, Chaparro-Garcia A, Segretin ME, Stam R, Schornack S, Cano LM et al..  2010.  Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.
Beale CM, Lennon JJ, Yearsley JM, Brewer MJ, Elston DA.  2010.  Regression analysis of spatial data. Ecology Letters. 13:246-264.

Printed from /publications/publications-list/keyword/2?page=1&sort=year&order=asc on 08/02/23 08:15:11 PM

The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.