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Titlyanov EA, Kiyashko SI, Titlyanova TV, Kalita TL, Raven JA.  2008.  δ13C and δ15N values in reef corals Porites lutea and P. cylindrica and in their epilithic and endolithic algae. Marine Biology. 155:353-361. Abstract
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Cacciola SO, Spica D, Cooke DEL, Raudino F, San Lio GMD.  2006.  Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract
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Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan GW, Johnson IT, Mariman EC, Elliott RM et al..  2009.  Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes and Nutrition. 4:95-102.
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Augustin NH, McNicol JW, Marriott CA.  2006.  Using the truncated auto-Poisson model for spatially correlated counts of vegetation. Journal of Agricultural Biological and Environmental Statistics. 11:1-23. Abstract
Davidson RS, Marion G, White PCL, Hutchings MR.  2009.  Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell AJ, Leroy P, Morgante M, Panaud O, Paux E et al..  2007.  A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics. 8:973-982. Abstract
Simpson CG, Brown JWS.  2008.  U12-dependent intron splicing in plants. Current Topics in Microbiology and Immunology. 326:61-82.
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Syed NH, Sureshsundar S, Wilkinson MJ, Bhau BS, Cavalcanti JJV, Flavell AJ.  2005.  Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.
Glasbey CA.  2009.  Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
Joshi MV, Mann SG, Antelmann H, Widdick DA, Fyans JK, Chandra G, Hutchings MI, Toth IK, Hecker M, Loria R et al..  2010.  The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
Bahar B, Moloney AP, Monahan FJ, Harrison SM, Zazzo A, Scrimgeour CM, Begley IS, Schmidt O.  2009.  Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
Raven JA, Crane P.  2007.  Trees. Current Biology. 17:R303-R304. Abstract
Raven JA.  2008.  Transpiration: how many functions? New Phytologist. 179:905-908. Abstract
van Dijk JP, Cankar K, Scheffer SJ, Beenen HGJ, Shepherd LVT, Stewart D, Davies HV, Wilcockson SJ, Leifert C, Gruden K et al..  2009.  Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract
Potokina E, Druka A, Kearsey MJ.  2009.  Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
Ballingall KT, Rocchi M, McKeever DJ, Wright F.  2010.  Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.
Tilsner J, Oparka KJ.  2010.  Tracking the green invaders: advances in imaging virus infection in plants. Biochemical Journal. 430:21-37.
Edwards D, Li CS, Raven JA.  2006.  Tracheids in an early vascular plant: a tale of two branches. Botanical Journal of the Linnean Society. 150:115-130. Abstract
McDougall GJ, Martinussen I, Stewart D.  2008.  Towards fruitful metabolomics: High throughput analyses of polyphenol composition in berries using direct infusion mass spectrometry. Journal of Chromatography B. 871:362-369. Abstract
Grouffaud S, Whisson SC, Birch PRJ, van West P.  2010.  Towards an understanding of how RxLR-effector proteins are translocated from oomycetes into host cells. Fungal Genetics Reviews. 24:27-36.
Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F.  2009.  TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics. 25:126-127.
Cooke DEL, Schena L, Cacciola SO.  2007.  Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract
Gregorich EG, Rochette P, Hopkins DW, McKim UF, St-Georges P.  2006.  Tillage-induced environmental conditions in soil and substrate limitation determine biogenic gas production. Soil Biology & Biochemistry. 38:2614-2628. Abstract
Goodall N, Kisiswa L, Prashar A, Faulkner S, Tokarczuk P, Singh K, Erichsen JT, Guggenheim J, Halfter W, Wride MA.  2009.  Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
Jones HG, Serraj R, Loveys BR, Xiong LH, Wheaton A, Price AH.  2009.  Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
Hackett CA, Milne I, Bradshaw JE, Luo ZW.  2007.  TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract
Hurd CL, Hepburn CD, Currie KI, Raven JA, Hunter KA.  2009.  Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.
Wright HW, Bartley K, Nisbet AJ, McDevitt RM, Sparks NHC, Brocklehurst S, Huntley JF.  2009.  The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.
Pearce MC, Chase-Topping ME, McKendrick IJ, Mellor DJ, Locking ME, Allison L, Ternent HE, Matthews L, Knight HI, Smith AW et al..  2009.  Temporal and spatial patterns of bovine Escherichia coli O157 prevalence and comparison of temporal changes in the patterns of phage types associated with bovine shedding and human E. coli O157 cases in Scotland between 1998-2000 and 2002-2004. BMC Microbiology. 9:-276.
Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ.  2007.  Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Traffic. 8:21-31. Abstract
Broadley MR, White PJ, Hammond JP, Zelko I, Lux A.  2007.  Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
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Wall DH, Adams BJ, Barrett JE, Hopkins DW, Virginia RA.  2006.  A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica. Soil Biology & Biochemistry. 38:3001-3002. Abstract
Krivtsov V, Garside A, Brendler A, Liddell K, Griffiths BS, Staines HJ.  2007.  A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology. 57:467-484. Abstract
Hodgson JG, Sharafi M, Jalili A, Diaz S, Montserrat-Marti G, Palmer C, Cerabolini B, Pierce S, Hamzehee B, Asri Y et al..  2010.  Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D et al..  2008.  The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract
Cerm J, Gasp J, De Lorenzi F, Jones HG.  2007.  Stand biometry and leaf area distribution in an old olive grove at Andria, southern Italy. Annals of Forest Science. 64:491-501. Abstract
Forbes GA, Chac MG, Kirk HG, Huarte MA, Van Damme M, Distel S, Mackay GR, Stewart HE, Lowe R, Duncan JM et al..  2005.  Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
Zhang X-S, Chase-Topping ME, McKendrick IJ, Savill NJ, Woolhouse MEJ.  2010.  Spread of E. coli O157 infection among Scottish cattle farms: Stochastic models and model selection. Epidemics. 2:11-20.
Ki LP, Felber F, Flavell AJ, Guadagnuolo R, Guiatti D, Hauser TP, Olivieri AM, Scotti I, Syed NH, Vischi M et al..  2009.  Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
Polechov J, Barton N, Marion G.  2009.  Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
Glasbey CA, Allcroft DJ.  2008.  A spatiotemporal auto-regressive moving average model for solar radiation. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:343-355. Abstract
Pickles BJ, Genney DR, Potts JM, Lennon JJ, Anderson IC, Alexander IJ.  2010.  Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186:755-768.
Bradshaw JE, Titley M, Wilson RN.  2009.  Single seed descent as a breeding method for swedes (Brassica napus L. var. napobrassica Peterm). Euphytica. 169:387-401.
Wood JC, McKendrick IJ, Gettingby G.  2007.  A simulation model to assess herd-level intervention strategies against E. coli O157. Epidemiology and Infection. 135:749-764. Abstract
Carr JP, Lewsey MG, Palukaitis P.  2010.  Signaling in induced resistance. Advances in Virus Research. 76:57-121.
Jones MR, Raven JA, Leith ID, Cape JN, Smith RI, Fowler D.  2008.  Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology. 148:893-901. Abstract
Visser RGF, Bachem CWB, de Boer JM, Bryan GJ, Chakrabati SK, Feingold S, Gromadka R, van Ham RCHJ, Huang SW, Jacobs JME et al..  2009.  Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.
Holeva RC, Brown DJF, Curtis RHC, Neilson R.  2008.  Selective recovery of the virus-vector trichodorid nematode Paratrichodorus anemones from soil samples by immunomagnetic capture. European Journal of Plant Pathology. 120:85-89. Abstract
Leitch ECM, Walker AW, Duncan SH, Holtrop G, Flint HJ.  2007.  Selective colonization of insoluble substrates by human faecal bacteria. Environmental Microbiology. 9:667-679. Abstract
Lehrach WP, Husmeier D.  2009.  Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
Montero-Serrano JC, Palarea-Albaladejo J, Martin-Fern JA, Mart M, Guti JV.  2010.  Sedimentary chemofacies characterization by means of multivariate analysis. Sedimentary Geology. 228:218-228.
Mitchell A, Oommen M, Bhatia P, Scott P, Robertson ZC, Stewart D, McDougall GJ, Wallace HM.  2007.  Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract
Horgan GW.  2007.  Sample size and replication in 2D gel electrophoresis studies. Journal of Proteome Research. 6:2884-2887. Abstract
Crampton BG, Hein I, Berger DK.  2009.  Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
Poulsen M, Schroder M, Wilcks A, Kroghsbo S, Lindecrona RH, Miller A, Frenzel T, Danier J, Rychlik M, Shu QY et al..  2007.  Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
Kuiper HA, Davies HV.  2010.  The SAFE FOODS risk analysis framework suitable for GMOs? A case study. Food Control. 21:1662-1676.
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Mylnikov SV, Kokko H, K SO, Oparina TI, Davies HV, Stewart D.  2005.  Rubus fruit juices affect lipid peroxidation in a Drosophila melanogaster model in vivo.. Journal of Agricultural and Food Chemistry. 53:7728-7733. Abstract
Lawson DJ, Jensen HJ.  2009.  The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology. 257:696-703.
Brown JWS, Shaw PJ.  2008.  The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.
Davies HV.  2010.  The role of 'omics' technologies in food safety assessment. Food Control. 21:1601-1610.
Andrews M, Raven JA, Lea PJ, Sprent JI.  2006.  A role for shoot protein in shoot-root dry matter allocation in higher plants. Annals of Botany. 97:3-10. Abstract
Hinsinger P, Gobran GR, Gregory PJ, Wenzel WW.  2005.  Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract
Paroli R, Spezia L.  2010.  Reversible jump markov chain Monte Carlo methods and segmentation algorithms in hidden Markov models. Australian & New Zealand Journal of Statistics. 52:151-166.
Spezia L.  2009.  Reversible jump and the label switching problem in hidden Markov models. Journal of Statistical Planning and Inference. 139:2305-2315.
Hill P, Burford D, Martin DMA, Flavell AJ.  2005.  Retrotransposon populations of Vicia species with varying genome size. Molecular Genetics and Genomics. 273:371-381. Abstract
Nart P, Naylor SW, Huntley JF, McKendrick IJ, Gally DL, Low JC.  2008.  Responses of cattle to gastrointestinal colonization by Escherichia coli O157:H7. Infection and Immunity. 76:5366-5372. Abstract
Iglesias-Rodriguez MD, Buitenhuis ET, Raven JA, Schofield O, Poulton AJ, Gibbs S, Halloran PR, de Baar HJW.  2008.  Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
Scott D, Welch D, van der Wal R, Elston DA.  2007.  Response of the moss Racomitrium lanuginosum to changes in sheep grazing and snow-lie due to a snow-fence. Applied Vegetation Science. 10:229-238. Abstract
Vittoz P, Bayfield N, Brooker R, Elston DA, Duff EI, Theurillat JP, Guisan A.  2010.  Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.
Wattegedera S, Watson DM, Hope JC, Kaiser P, Sales J, McInnes CJ, Entrican G.  2010.  Relative quantitative kinetics of interferon-gamma and interleukin-10 mRNA and protein production by activated ovine peripheral blood mononuclear cells. Veterinary Immunology and Immunopathology. 136:34-42.
Hall NM, Griffiths H, Corlett JA, Jones HG, Lynn J, King GJ.  2005.  Relationships between water-use traits and photosynthesis in Brassica oleracea resolved by quantitative genetic analysis. Plant Breeding. 124:557-564. Abstract
Beardall J, Roberts S, Raven JA.  2005.  Regulation of inorganic carbon acquisition by phosphorus limitation in the green alga Chorella emersonii. Canadian Journal of Botany - Review Canadienne de Botanique. 83:859-864. Abstract
Beale CM, Lennon JJ, Yearsley JM, Brewer MJ, Elston DA.  2010.  Regression analysis of spatial data. Ecology Letters. 13:246-264.
Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C.  2009.  Reconstruction of monocotyledonous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences, USA. 106:14908-14913.
Hancock RD.  2009.  Recent patents on vitamin C: Opportunities for crop improvement and single-step biological manufacture. Recent Patents on Food, Nutrition and Agriculture. 1:39-49. Abstract
Oliva R, Win J, Raffaele S, Boutemy L, Bozkurt TO, Chaparro-Garcia A, Segretin ME, Stam R, Schornack S, Cano LM et al..  2010.  Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.
Robinson G, Wright S, Elwin K, Hadfield SJ, Katzer F, Bartley PM, Hunter PR, Nath M, Innes EA, Chalmers RM.  2010.  Re-description of Cryptosporidium cuniculus Inman and Takeuchi 1979 (Apicomplexa:Cryptosporidiidae): morphology, biology and phylogeny. International Journal for Parasitology. 40:1539-1548.
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Albon SD, Brewer MJ, O'Brien S, Nolan AJ, Cope D.  2007.  Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44:1176-1187. Abstract
Moran D, McVittie A, Allcroft DJ, Elston DA.  2007.  Quantifying public preferences for agri-environmental policy in Scotland: a comparison on methods. Ecological Economics. 63:42-53. Abstract
Raven JA.  2005.  Q&A - John Raven. Current Biology. 15:R905-R906. Abstract
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Rotariu O, Smith-Palmer A, Cowden J, Bessell PR, Innocent GT, Reid SWJ, Matthews L, Dallas J, Ogden ID, Forbes KJ et al..  2010.  Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
Lehesranta SJ, Davies HV, Shepherd LVT, Koistinen KM, Massat N, Nunan N, McNicol JW, K SO.  2006.  Proteomic analysis of the potato tuber life cycle. Proteomics. 6:6042-6052. Abstract
Szili-Kovacs T, Torok K, Tilston EL, Hopkins DW.  2007.  Promoting microbial immobilization of soil nitrogen during restoration of abandoned agricultural fields by organic additions. Biology and Fertility of Soils. 43:823-828.
Hein I, Birch PRJ, Danan S, Lefebvre V, Odeny DA, Gebhardt C, Trognitz F, Bryan GJ.  2009.  Progress in mapping and cloning qualitative and quantitative resistance against Phytophthora infestans in potato and its wild relatives. Potato Research. 52:215-227.
McCue KF, Allen PV, Shepherd LVT, Blake A, Whitworth JL, Maccree MM, Rockhold DR, Stewart D, Davies HV, Belknap WR.  2006.  The primary in vivo steroidal alkaloid glucosyltransferase from potato. Phytochemistry. 67:1590-1597. Abstract
Laurenson K, McKendrick IJ, Reid HW, Challenor R, Mathewson GK.  2007.  Prevalence, spatial distribution and the effect of control measures on louping-ill virus in the Forest of Bowland, Lancashire. Epidemiology and Infection. 135:963-973. Abstract
Hotchkiss EJ, Dagleish MP, Willoughby K, McKendirck IJ, Finlayson J, Zadoks RN, Newsome E, Brulisauer F, Gunn GJ, Hodgson JC.  2010.  Prevalence of Pasteurella multocida and other respiratory pathogens in the nasal tract of Scottish calves. Veterinary Record. 167:555-560.
Brulisauer F, Lewis FI, Ganser AG, McKendrick IJ, Gunn GJ.  2010.  The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
Christie WW, Dobson G, Adlof RO.  2007.  A practical guide to the isolation, analysis and identification of conjugated linoleic acid. Lipids. 42:1073-1084. Abstract
McCue KF, Allen PV, Shepherd LVT, Blake A, Maccree MM, Rockhold DR, Novy RG, Stewart D, Davies HV, Belknap WR.  2007.  Potato glycosterol rhamnosyltransferase, the terminal step in triose side-chain biosynthesis. Phytochemistry. 68:327-334. Abstract
Carfrae JA, Sheppard LJ, Raven JA, Leith ID, Crossley A.  2007.  Potassium and phosphorus additions modify the response of Sphagnum capillifolium growing on a Scottish ombrotrophic bog to enhanced nitrogen deposition. Applied Geochemistry. 22:1111-1121. Abstract
Andrews M, Hodge S, Raven JA.  2010.  Positive plant microbial interactions. Annals of Applied Biology. 157:317-320.
Riepsamen AH, Blok VC, Phillips MS, Gibson T, Dowton M.  2008.  Poly(T) variation within mitochondrial protein-coding genes in Globodera (Nematoda : Heteroderidae). Journal of Molecular Evolution. 66:197-209. Abstract
Harrison BD.  2008.  Plant virology in the 20th century. Phytopathology. 98, Supplement:S193-S194. Abstract
Lambers H, Raven JA, Shaver GR, Smith SE.  2008.  Plant nutrient-acquisition strategies change with soil age. Trends in Ecology and Evolution. 23:94-103. Abstract
Millam S, Obert B, Pret'ov A.  2005.  Plant cell and biotechnology studies in Linum usitatissimum - a review. Plant Cell, Tissue and Organ Culture. 82:93-103. Abstract
Raven JA, Finkel ZV, Irwin AJ.  2005.  Picophytoplankton: bottom-up and top-down controls on ecology and evolution. Vie et Milieu - Life and Environment. 55:209-215. Abstract
Finkel ZV, Beardall J, Flynn KJ, Quigg A, Rees TAV, Raven JA.  2010.  Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
Mostowfizadeh-Ghalamfarsa R, Cooke DEL, Banihashemi Z.  2008.  Phytophthora parsiana sp. nov., a new high-temperature tolerant species. Mycological Research. 112:783-794. Abstract
Giordano M, Norici A, Gilmour DJ, Raven JA.  2007.  Physiological responses of the green alga Dunaliella parva (Volvocales, Chlorophyta) to controlled incremental changes in the N source. Functional Plant Biology. 34:925-934. Abstract
Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Schoaei Z, Deal KR, Langridge P.  2010.  Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. BMC Genomics. 11:-382.
Mostowfizadeh-Ghalamfarsa R, Panabi F, Banihashemi Z, Cooke DEL.  2010.  Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology. 114:325-339.
Judge J, Davidson RS, Marion G, White PCL, Hutchings MR.  2007.  Persistence of Mycobacterium avium subspecies paratuberculosis in rabbits: the interplay between horizontal and vertical transmission. Journal of Applied Ecology. 44:302-311. Abstract
Yahiaoui S, Igartua E, Moralejo M, Ramsay L, Molina-Cano J-L, Ciudad FJ, Lasa JM, Gracia MP, Casas AM.  2008.  Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
Stamati K, Hollingsworth PM, Russell JR.  2007.  Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui AH, Zhan J, McDonald BA.  2006.  Pathogen evolution in response to host resistance genes: Evidence from field experiments with Rhynchosporium secalis on barley. Phytopathology. 96:S2-S2.
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Cockell CS, Raven JA.  2007.  Ozone and life on the Archaean earth. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1889-1901. Abstract
Guilioni L, Jones HG, Leinonen I, Lhomme JP.  2008.  On the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology. 148:1908-1912.
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Baccini M, Bachmaier EM, Biggeri A, Boekschoten MV, Bouwman FG, Brennan L, Caesar R, Cinti S, Coort SL, Crosley K et al..  2008.  The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
Li X, Halpin C, Ryan MD.  2007.  A novel cleavage site within the potato leafroll virus P1 polyprotein. Journal of General Virology. 88:1620-1623. Abstract
Wheelhouse N, Katzer F, Wright F, Longbottom D.  2010.  Novel chlamydia-like organisms as cause of bovine abortions, UK. Emerging Infectious Diseases. 16:1323-1324.
Krishnarajah I, Marion G, Gibson G.  2007.  Novel bivariate moment-closure approximations. Mathematical Biosciences. 208:621-643. Abstract
Raven JA.  2008.  Not drowning but photosynthesising probing plant plastrons. New Phytologist. 177:841-845. Abstract
Raven JA, Knoll AH.  2010.  Non-skeletal biomineralisation by eukaryotes: Matters of moment and gravity. Geomicrobiology Journal. 27:572-584.
Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al..  2009.  Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
Dos Reis J FB, Simon MF, Gross E, Boddey RM, Elliott GN, Neto NE, Loureiro MdeF, de Queiroz LP, Scotti MR, Chen W-M et al..  2010.  Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
Glidewell SM.  2006.  NMR imaging of developing barley grains. Journal of Cereal Science. 43:70-78. Abstract
Andrews M, Lea PJ, Raven JA, Azevedo RA.  2009.  Nitrogen use efficiency. 3. Nitrogen fixation: genes and costs. Annals of Applied Biology. 155:1-13.
Munns R, James RA, Sirault XRR, Furbank RT, Jones HG.  2010.  New phenotyping methods for screening wheat and barley for beneficial responses to water deficit. Journal of Experimental Botany. 61:3499-3507.
Moir HJ, Gibbins CN, Buffington JM, Webb JH, Soulsby C, Brewer MJ.  2009.  A new method to identify the fluvial regimes used by spawning salmonids. Canadian Journal of Fisheries and Aquatic Sciences. 66:1404-1408.
Wilson MR, Foucaud L, Barlwo PG, Hutchison GR, Sales J, Simpson RJ, Stone V.  2007.  Nanoparticle interactions with zinc and iron: Implications for toxicology and inflammation. Toxicology and Applied Pharmacology. 225:80-89. Abstract
Jamar C, Loffet F, Frettinger P, Ramsay L, Fauconnier ML, du Jardin P.  2010.  NAM-1gene polymorphism and grain protein content in Hordeum. Journal of Plant Physiology. 167:497-501.
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Blower TR, Fineran PC, Johnson MJ, Toth IK, Humphreys DP, Salmond GPC.  2009.  Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
Nonyane BAS, Theobold CM.  2008.  Multiplicative models for combining information from several sensory experiments: A Bayesian analysis. Food Quality and Preference. 19:260-266. Abstract
Matheson LA, Loren A, Hanton SL, Rossi M, Latijnhouwers M, Stefano G, Renna L, Brandizzi F.  2007.  Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the golgi matrix. Plant Physiology. 143:1615-1627.
Oono R, Schmitt I, Sprent JI, Denison RF.  2010.  Multiple evolutionary origins of legume traits leading to extreme rhizobial differentiation. New Phytologist. 187:508-520.
Caumette G, Ouypornkochagorn S, Scrimgeour CM, Raab A, Feldmann J.  2007.  Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract
Chaerle L, Leinonen I, Jones HG, van der Straeten D.  2007.  Monitoring and screening plant populations with combined thermal and chlorophyll fluorescence imaging. Journal of Experimental Botany. 58:773-784. Abstract
Sharma SK, Millam S, Hedley PE, McNicol JW, Bryan GJ.  2008.  Molecular regulation of somatic embryogenesis in potato: an auxin led perspective. Plant Molecular Biology. 68:185-201. Abstract
Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al..  2007.  Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.
Madsen LH, Tirichine L, Jurkiewicz A, Sullivan JT, Heckmann AB, Bek AS, Ronson CW, James EK, Stougaard J.  2010.  The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.
Morris WL, Ducreux LJM, Bryan GJ, Taylor MA.  2008.  Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.
Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al..  2005.  Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
Zhang X, Johnson SN, Gregory PJ, Crawford JW, Young IM, Murray PJ, Jasinka E.  2006.  Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract
Grzegorczyk M, Husmeier D, Edwards KD, Ghazal P, Millar AJ.  2008.  Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract
Preedy K, Schofield PG, Liu S, Matzavinos A, Chaplain MAJ, Hubbard SF.  2010.  Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.
Butler A, Doherty RM, Marion G.  2009.  Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
Swanston JS, Newton AC.  2005.  Mixtures of UK wheat as an efficient and environmentally friendly source for bioethanol. Journal of Industrial Ecology. 9:109-126. Abstract
Vinten AJA, Potts JM, Avery L, Strachan NJC.  2009.  Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3:744-752.
H C, English LC, Halpin C, Andreux F, Hopkins DW.  2006.  Microbial community structure in soils with decomposing residues from plants with genetic modifications to lignin biosynthesis. FEMS Microbiology Letters. 263:68-75. Abstract
Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG et al..  2010.  A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.  2008.  Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract
Renberg L, Johansson AI, Shutova T, Stenlund H, Aksmann A, Raven JA, Gardestrom P, Moritz T, Samuelsson G.  2010.  A metabolomic approach to study major metabolite changes during acclimation to limiting CO2 in Chlamydomonas reinhardtii. Plant Physiology. 154:187-196.
Davies HV, Shepherd LVT, Stewart D, Frank T, R R, Engel K-H.  2010.  Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.
Ducreux LJM, Morris WL, Hedley PE, Shepherd T, Davies HV, Millam S, Taylor MA.  2005.  Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein. Journal of Experimental Botany. 56:81-89. Abstract
Solomon-Blackburn RM, Nikan J, Barker H.  2008.  Mechanism of strong resistance to Potato leafroll virus infection in a clone of potato (Solanum tuberosum). Annals of Applied Biology. 152:339-347. Abstract
Fowler PA, Cassie S, Rhind SM, Brewer MJ, Collinson JM, Lea RG, Baker PJ, Bhattacharya S, O'Shaughnessy PJ.  2008.  Maternal smoking during pregnancy specifically reduces human fetal desert hedgehog gene expression during testis development. Journal of Clinical Endocrinology and Metabolism. 93:619-626. Abstract
Rhind SM, Kyle CE, Mackie C, McDonald L, Zhang Z, Duff EI, Bellingham M, Amezaga MR, Mandon-Pepin B, Loup B et al..  2010.  Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
Bisognin DA, Douches DS, Buszka L, Bryan GJ, Wang D.  2005.  Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract
Blum M, Boehler M, Randall E, Young V, Csukai M, Kraus S, Moulin F, Scalliet G, Avrova AO, Whisson SC et al..  2010.  Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.
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Whybrow S, Horgan GW, Stubbs RJ.  2008.  Low-energy reporting and duration of recording period. European Journal of Clinical Nutrition. 62:1148-1150. Abstract
Baggaley NJ, Langan SJ, Futter MN, Potts JM, Dunn SM.  2009.  Long-term trends in hydro-climatology of a major Scottish mountain river. Science of the Total Environment. 407:4633-4641.
Magurran AE, Baillie SR, Buckland ST, Dick JM, Elston DA, Scott EM, Smith RI, Somerfield PJ, Watt AD.  2010.  Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time. Trends in Ecology and Evolution. 25:574-582.
Koroleva OA, Brown JWS, Shaw PJ.  2009.  Localization of eIF4A-III in the nucleolus and splicing speckles is an indicator of plant stress. Plant Signaling & Behavior. 4:1148-1151.
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Livestock grazing behavior and inter- versus intraspecific disease risk via the fecal-oral route. Behavioral Ecology. 20:426-432.
Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ.  2009.  Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
Kilminster KL, Walker DI, Thompson PA, Raven JA.  2006.  Limited nutritional benefit to the seagrass Halophila ovalis, in culture, following sediment organic matter enrichment. Estuarine Coastal and Shelf Science. 68:675-685. Abstract
Quigg A, Kevekordes K, Raven JA, Beardall J.  2006.  Limitations on microalgal growth at very low photon fluence rates: the role of energy slippage. Photosynthesis Research. 88:299-310. Abstract
Selman C, McLaren JS, Mayer CD, Duncan JS, Collins AR, Duthie GG, Redman P, Speakman JR.  2008.  Lifelong, . Rejuvenation Research. 11:83-95. Abstract
Allcroft DJ, Glasbey CA, Paulo MJ.  2007.  A latent Gaussian model for multivariate consumption data. Food Quality and Preference. 18:508-516. Abstract
Butler A, Glasbey CA.  2008.  A latent Gaussian model for compositional data with zeros. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:505-520. Abstract
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Lyons M, Cardle L, Rostoks N, Waugh R, Flavell AJ.  2008.  Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome. Molecular Genetics and Genomics. 280:275-285. Abstract
Mitchell RJ, Hester AJ, Campbell CD, Chapman SJ, Cameron CM, Hewison RL, Potts JM.  2010.  Is vegetation composition or soil chemistry the best predictor of the soil microbe community? Plant and Soil. 333:417-430.
Andrews M, Raven JA, Sprent JI, Lea PJ.  2007.  Is shoot growth correlated to leaf protein concentration? Trends in Plant Science. 12:531-532. Abstract
Finkel ZV, Quigg A, Raven JA, Reinfelder JR, Schofield OE, Falkowski PG.  2006.  Irradiance and the elemental stoichiometry of marine phytoplankton. Limnology and Oceanography. 51:2690-2701. Abstract
Mahajan A, Currie CG, Mackie S, Tree J, McAteer S, McKendrick I, McNeilly TN, Roe A, La Ragione RM, Woodward MJ et al..  2009.  An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157:H7 with bovine intestinal epithelium. Cellular Microbiology. 11:121-137.
Baxter EM, Jarvis S, D'Eath RB, Ross DW, Robson SK, Farish M, Nevison IM, Lawrence AB, Edwards SA.  2008.  Investigating the behavioural and physiological indicators of neonatal survival in pigs. Theriogenology. 69:773-783. Abstract
Nunan N, Ritz K, Rivers M, Feeney D, Young IM.  2006.  Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract
Brown JWS, Marshall DF, Echeverria M.  2008.  Intronic noncoding RNAs and splicing. Trends in Plant Science. 13:335-342. Abstract
Rommens CM, Haring MA, Swords K, Davies HV, Belknap WR.  2007.  The intragenic approach as a new extension to traditional plant breeding. Trends in Plant Science. 12:397-403. Abstract
Faisal A, Dondelinger F, Husmeier D, Beale CM.  2010.  Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
Makarov VV, Obraztsova EA, Solovyev AG, Morozov SY, Taliansky ME, Yaminsky IV, Kalinina NO.  2010.  The internal domain of hordeivirus movement protein TGB1 forms in vitro filamentous structures.. Biochemistry (Moscow). 75:752-758.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.