Publications list

Found 417 results

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2005

Norra S, Handley LL, Berner Z, St D. 2005. 13C and 15N natural abundances of urban soils and herbaceous vegetation in Karlsruhe, Germany. European Journal of Soil Science. 56:607-620. Abstract

Fargette M, Lollier V, Phillips M, Blok VC, Frutos R. 2005. AFLP analysis of the genetic diversity of Meloidogyne chitwoodi and M. fallax, major agricultural pests. Comptes Rendus Biologies. 328:455-462. Abstract

McDougall GJ, Gordon SL, Brennan RM, Stewart D. 2005. Anthocyanin-flavanol condensation products from blackcurrant (Ribes nigrum L.). Journal of Agricultural and Food Chemistry. 53:7878-7885. Abstract

McDougall GJ, Fyffe S, Dobson P, Stewart D. 2005. Anthocyanins from red wine - their stability under simulated gastrointestinal digestion. Phytochemistry. 66:2540-2548. Abstract

Hancock RD, Viola R. 2005. Biosynthesis and catabolism of L-ascorbic acid in plants. Critical Reviews in Plant Sciences. 24:167-188. Abstract

Raven JA. 2005. Cellular location of starch synthesis and evolutionary origin of starch genes. Journal of Phycology. 41:1070-1072. Abstract

Molina-Cano J-L, Russell JR, Moralejo MA, Escacena JL, Arias G, Powell W. 2005. Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics. 110:613-619.

Giordano M, Beardall J, Raven JA. 2005. CO2 concentrating mechanisms in algae: mechanisms, environmental modulation and evolution. Annual Review of Plant Biology. 56:99-131. Abstract

Lehesranta SJ, Davies HV, Shepherd LVT, Nunan N, McNicol JW, Auriola S, Koistinen KM, Suomalainen S, Kokko HI, K SO. 2005. Comparison of tuber proteomes of potato varieties, landraces and genetically modified lines. Plant Physiology. 138:1690-1699. Abstract

Bychek EA, Dobson G, Harwood JL, Guschina IA. 2005. Daphnia magna can tolerate short-term starvation without major changes in lipid metabolism. Lipids. 40:599-608. Abstract

Husmeier D, Wright F, Milne I. 2005. Detecting interspecific recombination with a pruned probabilistic divergence measure. Bioinformatics. 21:1797-1806. Abstract

McDougall GJ, Shpiro F, Dobson P, Smith P, Blake A, Stewart D. 2005. Different polyphenolic components of soft fruits inhibit . Journal of Agricultural and Food Chemistry. 53:2760-2766. Abstract

Parr AJ, Mellon FA, Colquhoun IJ, Davies HV. 2005. Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling. Journal of Agricultural and Food Chemistry. 53:5461-5466. Abstract

van Haren JLM, Handley LL, Biel KY, Kudeyarov VN, McLain JET, Martens DA, Colodner DC. 2005. Drought-induced nitrous oxide flux dynamics in an enclosed tropical forest. Global Change Biology. 11:1247-1257. Abstract

Andrews M, Maule HG, Raven JA, Mistry A. 2005. Extension growth of Impatiens glandulifera at low irradiance: importance of nitrate and potassium accumulation. Annals of Botany. 95:641-648. Abstract

Krivtsov V, Liddell K, Bezginova T, Salmond R, Staines HJ, Watling R, Garside A, Thompson JA, Griffiths BS, Brendler A. 2005. Forest litter bacteria: relationships with fungi, microfauna, and litter composition over a winter-spring period. Polish Journal of Ecology. 53:383-394. Abstract

Naglreiter C, Reichenauer TG, Goodman BA, Bolh HR. 2005. Free radical generation in Pinus sylvestris and Larix decidua seeds primed with polyethylene glycol or potassium salt solutions. Plant Physiology and Biochemistry. 43:117-123. Abstract

Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR, Powell W. 2005. Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract

Davies HV. 2005. GM organisms and the EU regulatory environment.. Proceedings of the Nutrition Society. 64:481-486.

Granum E, Raven JA, Leegood RC. 2005. How do marine diatoms fix 10 billion tonnes of inorganic carbon per year? Canadian Journal of Botany - Review Canadienne de Botanique. 83:898-908. Abstract

Kremer L, de Chastellier C, Dobson G, Gibson KJC, Bifani P, Balor S, Gorvel J-P, Locht C, Minnikin DE, Besra GS. 2005. Identification and structural characterisation of an unusual mycobaterial monomycoyldiacyglycerol. Molecular Microbiology. 57:1113-1126.

Hancock RD, Viola R. 2005. Improving the nutritional value of crops through enhancement of L-ascorbic acid (vitamin C) content: rationale and biotechnological opportunities. Journal of Agricultural and Food Chemistry. 53:5248-5257. Abstract

Hamilton PB, Stevens JR, Holz P, Boag B, Cooke B, Gibson WC. 2005. The inadvertent introduction into Australia of Trypanosoma nabiasi, the trypanosome of the European rabbit (Oryctolagus cuniculus), and its potential for biocontrol. Molecular Ecology. 14:3167-3175. Abstract

McDougall GJ, Stewart D. 2005. The inhibitory effects of berry polyphenols on digestive enzymes. Biofactors. 23:189-195. Abstract

Jing RC, Knox MR, Lee JM, Vershinin AV, Ambrose M, Ellis THN, Flavell AJ. 2005. Insertional polymorphism and antiquity of PDR1 retrotransposon insertions in Pisum species. Genetics. 171:741-752. Abstract

Bisognin DA, Douches DS, Buszka L, Bryan GJ, Wang D. 2005. Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract

McCue KF, Shepherd LVT, Allen PV, Maccree MM, Rockhold DR, Corsini D l, Davies HV, Belknap WR. 2005. Metabolic compensation of steroidal glycoalkaloid biosynthesis in transgenic potato tubers: using reverse genetics to confirm the in vivo enzyme function of a steroidal alkaloid glycosyltransferase. Plant Science. 168:267-273. Abstract

Ducreux LJM, Morris WL, Hedley PE, Shepherd T, Davies HV, Millam S, Taylor MA. 2005. Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein. Journal of Experimental Botany. 56:81-89. Abstract

Swanston JS, Newton AC. 2005. Mixtures of UK wheat as an efficient and environmentally friendly source for bioethanol. Journal of Industrial Ecology. 9:109-126. Abstract

Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al.. 2005. Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract

Raven JA, Finkel ZV, Irwin AJ. 2005. Picophytoplankton: bottom-up and top-down controls on ecology and evolution. Vie et Milieu - Life and Environment. 55:209-215. Abstract

Millam S, Obert B, Pret'ov A. 2005. Plant cell and biotechnology studies in Linum usitatissimum - a review. Plant Cell, Tissue and Organ Culture. 82:93-103. Abstract

Raven JA. 2005. Q&A - John Raven. Current Biology. 15:R905-R906. Abstract

Beardall J, Roberts S, Raven JA. 2005. Regulation of inorganic carbon acquisition by phosphorus limitation in the green alga Chorella emersonii. Canadian Journal of Botany - Review Canadienne de Botanique. 83:859-864. Abstract

Hall NM, Griffiths H, Corlett JA, Jones HG, Lynn J, King GJ. 2005. Relationships between water-use traits and photosynthesis in Brassica oleracea resolved by quantitative genetic analysis. Plant Breeding. 124:557-564. Abstract

Hill P, Burford D, Martin DMA, Flavell AJ. 2005. Retrotransposon populations of Vicia species with varying genome size. Molecular Genetics and Genomics. 273:371-381. Abstract

Hinsinger P, Gobran GR, Gregory PJ, Wenzel WW. 2005. Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract

Mylnikov SV, Kokko H, K SO, Oparina TI, Davies HV, Stewart D. 2005. Rubus fruit juices affect lipid peroxidation in a Drosophila melanogaster model in vivo.. Journal of Agricultural and Food Chemistry. 53:7728-7733. Abstract

Forbes GA, Chac MG, Kirk HG, Huarte MA, Van Damme M, Distel S, Mackay GR, Stewart HE, Lowe R, Duncan JM et al.. 2005. Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract

Syed NH, Sureshsundar S, Wilkinson MJ, Bhau BS, Cavalcanti JJV, Flavell AJ. 2005. Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.

2006

Hamilton K, Barfoot J, Crawford KE, Simpson CG, Beaumont PC, Bownes M. 2006. Amplification of chloroplast DNA using the polymerase chain reaction (PCR): a practical activity for secondary school students. Journal of Biological Education. 40:172-177. Abstract

Raven JA. 2006. Aquatic viruses: the emerging story. Journal of the Marine Biological Association of the United Kingdom. 86:449-451. Abstract

Shepherd LVT, McNicol JW, Razzo R, Taylor MA, Davies HV. 2006. Assessing the potential for unintended effects in genetically modified potatoes perturbed in metabolic and developmental processes. Targeted analysis of key nutrients and anti-nutrients. Transgenic Research. 15:409-425. Abstract

Nuopponen M, Wikberg HI, Birch GM, J A-S, Maunu SL, Vuorinen T, Stewart D. 2006. Characterization of 25 tropical hardwoods with Fourier transform infrared,ultraviolet resonance Raman and 13C cross-polarisation magic-angle spinning NMR spectroscopy. Journal of Applied Polymer Science. 102:810-819. Abstract

Sunley RJ, Atkinson CJ, Jones HG. 2006. Chill unit models and recent changes in the occurrence of winter chill and spring frost in the United Kingdom. Journal of Horticultural Science & Biotechnology. 81:949-958. Abstract

Raven JA, Beardall J. 2006. Chorophyll fluorescence and ecophysiology: seeing red? New Phytologist. 169:449-451. Abstract

Luo ZW, Zhang Z, Leach L, Zhang RM, Bradshaw JE, Kearsey MJ. 2006. Constructing genetic linkage maps under a tetrasomic model. Genetics. 172:2635-2645. Abstract

Hopkins DW, Sparrow AD, Novis P, Gregorich EG, Elberling B, Greenfield LG. 2006. Controls on the distribution of productivity and organic resources in Antarctic dry valley soils (Review). Proceedings of the Royal Society B. 273:2687-2695. Abstract

Syed NH, Sorensen AP, Antonise R, van de Wiel C, van der Linden CG, van't Westende W, Hooftman DAP, den Nijs HCM, Flavell AJ. 2006. A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers. Theoretical and Applied Genetics. 112:517-527. Abstract

Riga E, Larsen R, Neilson R, Guerra N. 2006. Development of rapid diagnostic tools to identify viruliferous and non-viruliferous stubby root nematodes in the Pacific Northwest. Phytopathology. 96:S171-S171.

Simons V, Morrissey JP, Latijnhouwers M, Csukai M, Cleaver A, Yarrow C, Osborn A. 2006. Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrobial Agents and Chemotherapy. 50:2732-2740.

de Felipe P, Luke GA, Hughes LE, Gani D, Halpin C, Ryan MD. 2006. E unum pluribus: multiple proteins from a self-processing polyprotein. Trends in Biotechnology. 24:68-75. Abstract

Krivtsov V, Bezginova T, Salmond R, Liddell K, Garside A, Thompson J, Palfreyman JW, Staines HJ, Brendler A, Griffiths BS et al.. 2006. Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland. Forestry. 79:201-216. Abstract

Krivtsov V, Garside A, Bezginova T, Thompson J, Palfreyman JW, Salmond R, Liddell K, Brendler A, Griffiths BS, Watling R et al.. 2006. Ecological study of the forest litter meiofauna of a unique Scottish woodland. Animal Biology. 56:69-93. Abstract

Shepherd T, Griffiths DW. 2006. The effects of stress on plant epicuticular waxes. New Phytologist. 171:469-499. Abstract

Morris WL, Ducreux LJM, Fraser PD, Millam S, Taylor MA. 2006. Engineering ketocarotenoid biosynthesis in potato tubers. Metabolic Engineering. 8:253-263. Abstract

Nuopponen M, Birch GM, Sykes R, Lee S, Stewart D. 2006. Estimation of wood density and chemical composition by means of Diffuse Reflectance Mid-Infrared Fourier Transform (DRIFT-MIR) spectroscopy. Journal of Agricultural and Food Chemistry. 54:34-40. Abstract

Iannetta PPM, Laarhoven L-J, Medina-Escobar N, James EK, McManus MT, Davies HV, Harren FJM. 2006. Ethylene and carbon dioxide production by developing strawberries show a correlative pattern that is indicative of ripening climacteric fruit. Physiologia Plantarum. 127:247-259. Abstract

Caldwell KS, Russell JR, Langridge P, Powell W. 2006. Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics. 172:557-567. Abstract

Blok VC, Chapman S, Armstrong MR, Phillips M, Lilley C, Urwin P, Blanchard A, Grenier E, Jones JT. 2006. Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.

Nuopponen M, Shepherd T, Birch GM, Verrall SR, Stewart D. 2006. Hemicelluloses and pectins in 25 tropical hardwoods. Cellulose Chemistry and Technology. 40:735-738. Abstract

Walker PG, Gordon SL, Brennan RM, Hancock RD. 2006. High-throughput monolithic HPLC method for rapid vitamin C phenotyping of berry fruit. Phytochemical Analysis. 17:284-290. Abstract

Montechiaro F, Hirschmugl CJ, Raven JA, Giordano M. 2006. Homeostasis of cell composition during prolonged darkness. Plant Cell and Environment. 29:2198-2204. Abstract

Hopkins DW, Webster EA, Tilston EL, Halpin C. 2006. Influence of available substrates on the decomposition in soil of plant materials with genetic modifications to lignin biosynthesis. European Journal of Soil Science. 57:495-503. Abstract

Raven JA, Cockell CS. 2006. Influence on photosynthesis of starlight, moonlight, planetlight and light pollution (reflections on photosynthetically active radiation in the universe).. Astrobiology. 6:668-675. Abstract

Archer NAL, Jones HG. 2006. Integrating hyperspectral imagery at different scales to estimate component surface temperatures. International Journal of Remote Sensing. 27:2141-2159. Abstract

Nunan N, Ritz K, Rivers M, Feeney D, Young IM. 2006. Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract

Finkel ZV, Quigg A, Raven JA, Reinfelder JR, Schofield OE, Falkowski PG. 2006. Irradiance and the elemental stoichiometry of marine phytoplankton. Limnology and Oceanography. 51:2690-2701. Abstract

Quigg A, Kevekordes K, Raven JA, Beardall J. 2006. Limitations on microalgal growth at very low photon fluence rates: the role of energy slippage. Photosynthesis Research. 88:299-310. Abstract

Kilminster KL, Walker DI, Thompson PA, Raven JA. 2006. Limited nutritional benefit to the seagrass Halophila ovalis, in culture, following sediment organic matter enrichment. Estuarine Coastal and Shelf Science. 68:675-685. Abstract

H C, English LC, Halpin C, Andreux F, Hopkins DW. 2006. Microbial community structure in soils with decomposing residues from plants with genetic modifications to lignin biosynthesis. FEMS Microbiology Letters. 263:68-75. Abstract

Zhang X, Johnson SN, Gregory PJ, Crawford JW, Young IM, Murray PJ, Jasinka E. 2006. Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract

Glidewell SM. 2006. NMR imaging of developing barley grains. Journal of Cereal Science. 43:70-78. Abstract

Grant OM, Chaves MM, Jones HG. 2006. Optimising thermal imaging as a technique for detecting stomatal closure induced by drought stress under greenhouse conditions. Physiologia Plantarum. 127:507-518. Abstract

Morris WL, Ducreux LJM, Hedden P, Millam S, Taylor MA. 2006. Overexpression of a bacterial 1-deoxy-D-xylulose 5-phosphate synthase gene in potato tubers perturbs the isoprenoid metabolic network: implications for the control of the tuber life-cycle. Journal of Experimental Botany. 57:3007-3018. Abstract

Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui AH, Zhan J, McDonald BA. 2006. Pathogen evolution in response to host resistance genes: Evidence from field experiments with Rhynchosporium secalis on barley. Phytopathology. 96:S2-S2.

Ravensdale M, Toth IK, Birch PRJ. 2006. Phytotoxins and suppression of resistance: New mechanisms of disease induction in the plant pathogen Erwinia carotovora subsp. atroseptica. Phytopathology. 96:S96-S96.

McCue KF, Allen PV, Shepherd LVT, Blake A, Whitworth JL, Maccree MM, Rockhold DR, Stewart D, Davies HV, Belknap WR. 2006. The primary in vivo steroidal alkaloid glucosyltransferase from potato. Phytochemistry. 67:1590-1597. Abstract

Cooke DEL. 2006. The pros and cons of ITS-based phylogenetic analysis for the genus Phytophthora: current status and future vision. Phytopathology. 96:S134-S134.

Lehesranta SJ, Davies HV, Shepherd LVT, Koistinen KM, Massat N, Nunan N, McNicol JW, K SO. 2006. Proteomic analysis of the potato tuber life cycle. Proteomics. 6:6042-6052. Abstract

Andrews M, Raven JA, Lea PJ, Sprent JI. 2006. A role for shoot protein in shoot-root dry matter allocation in higher plants. Annals of Botany. 97:3-10. Abstract

Wall DH, Adams BJ, Barrett JE, Hopkins DW, Virginia RA. 2006. A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica. Soil Biology & Biochemistry. 38:3001-3002. Abstract

Gregorich EG, Rochette P, Hopkins DW, McKim UF, St-Georges P. 2006. Tillage-induced environmental conditions in soil and substrate limitation determine biogenic gas production. Soil Biology & Biochemistry. 38:2614-2628. Abstract

Edwards D, Li CS, Raven JA. 2006. Tracheids in an early vascular plant: a tale of two branches. Botanical Journal of the Linnean Society. 150:115-130. Abstract

Augustin NH, McNicol JW, Marriott CA. 2006. Using the truncated auto-Poisson model for spatially correlated counts of vegetation. Journal of Agricultural Biological and Environmental Statistics. 11:1-23. Abstract

Cacciola SO, Spica D, Cooke DEL, Raudino F, San Lio GMD. 2006. Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract

2007

Navajas EA, Lambe NR, McLean KA, Glasbey CA, Fisher AV, Charteris AJL, B L, Simm G. 2007. Accuracy of in vivo muscularity indices measured by computed tomography and their associaton with carcass quality in lambs. Meat Science. 75:533-542. Abstract

Glasbey CA, van der Heijden GWAM. 2007. Alignment and sub-pixel interpolation of images using Fourier methods. Journal of Applied Statistics. 34:217-230. Abstract

Kr E, Tups A, Archer ZA, Ross AW, Moar KM, Bell LM, Duncan JS, Mayer CD, Morgan PJ, Mercer JG et al.. 2007. Altered expression of SOCS3 in the hypothalamic arcuate nucleus during seasonal body mass changes in the field vole, Microtus agrestis. Journal of Neuroendocrinology. 19:83-94. Abstract

Scagliarini A, McInnes CJ, Gallina L, Dal Pozza F, Scagliarini L, Snoeck R, Prosperi S, Sales J, Gilray JA, Nettleton PF. 2007. Antiviral activity of HPMPC (cidofovir) against orf virus infected lambs. Antiviral Research. 73:169-174. Abstract

Raven JA, Larkum AWD. 2007. Are there ecological implications for the proposed energetic restrictions on photosynthetic oxygen evolution at high oxygen concentrations? Photosynthesis Research. 94:31-42. Abstract

Tetzlaff D, Waldron S, Brewer MJ, Soulsby C. 2007. Assessing nested hydrological and hydrochemical behaviour of a mesoscale catchment using continuous tracer data. Journal of Hydrology. 336:430-443. Abstract

Ravensdale M, Blom TJ, Gracia-Garza JA, Svircev AM, Smith RJ. 2007. Bacteriophages and the control of Erwinia carotovora subsp. carotovora. Canadian Journal of Plant Pathology. 29:121-130.

Roberts K, Granum E, Leegood RC, Raven JA. 2007. C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control. Plant Physiology. 145:230-235. Abstract

Roberts AMI, Theobold CM, McNeil M. 2007. Calibration of quantitative PCR assays. Journal of Agricultural Biological and Environmental Statistics. 12:364-378. Abstract

Roberts K, Granum E, Leegood RC, Raven JA. 2007. Carbon acquisition by diatoms. Photosynthesis Research. 93:79-88. Abstract

Artz RRE, Anderson IC, Chapman SJ, Hagn A, Schloter M, Potts JM, Campbell CD. 2007. Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands. Microbial Ecology. 54:508-522. Abstract

Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N. 2007. Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 152:1767-1774.

Mazzitelli L, Hancock RD, Haupt S, Walker PG, Pont SDA, McNicol JW, Cardle L, Morris J, Viola R, Brennan RM et al.. 2007. Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.. Journal of Experimental Botany. 58:1035-1045. Abstract

Coates EM, Popa G, Gill CIR, McCann M, McDougall GJ, Stewart D, Rowland I. 2007. Colon-available raspberry extract exhibit anti-cancer effects on in vitro models of colon cancer. Proceedings of the Nutrition Society. 66:67A-67A.

Glasbey CA, van der Heijden GWAM, Toh VFK, Gray A. 2007. Colour displays for categorical images. Color Research and Application. 32:304-309. Abstract

Khondoker MR, Glasbey CA, Worton BJ. 2007. A comparison of parametric and non-parametric methods for normalising cDNA microarray data. Biometrical Journal. 49:815-823. Abstract

Jones MR, Leith ID, Fowler D, Raven JA, Sutton MA, Nemitz E, Cape JN, Sheppard LJ, Smith RI, Theobold MR. 2007. Concentration-dependent NH3 deposition processes for mixed moorland semi-natural vegetation. Atmospheric Environment. 41:2049-2060. Abstract

Vanbergen AJ, Jones TH, Halls RS, Watt AD, Elston DA. 2007. Consequences for a host-parasitoid interaction of host-plant aggregation, isolation and phenology. Ecological Entomology. 32:419-427. Abstract

Beerling DJ, Hewitt CN, Pyle JA, Raven JA. 2007. Critical issues in trace gas biogeochemistry and global change. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1629-1642. Abstract

van Nugteren I, Hein I, Berger DK. 2007. Development of a virus-induced gene silencing system in pearl millet. South African Journal of Botany. 73:339-339. Abstract

Tzortzakakis EA, Blok VC. 2007. Differentiation in two populations of Meloidogyne incognita from Greece in relation to reproduction on resistant tomato and pepper. Journal of Plant Diseases and Protection. 114:276-277. Abstract

Andersen HS, Gambling L, Holtrop G, McArdle HJ. 2007. Effect of dietary copper deficiency on iron metabolism in the pregnant rat. British Journal of Nutrition. 97:239-246. Abstract

Lehesranta SJ, Koistinen KM, Massat N, Davies HV, Shepherd LVT, McNicol JW, Cakmak I, Cooper J, Luck L, K SO et al.. 2007. Effects of agricultural production systems and their components on protein profiles of potato tubers. Proteomics. 7:597-604. Abstract

Griffiths DW, Dale MFB, Morris WL, Ramsay G. 2007. Effects of season and postharvest storage on the carotenoid content of Solanum phureja potato tubers. Journal of Agricultural and Food Chemistry. 55:379-385. Abstract

Ravirala RS, Barabote RD, Wheeler DM, Reverchon S, Tatum O, Malouf J, Liu H, Pritchard L, Hedley PE, Birch PRJ et al.. 2007. Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract

Dziva F, Mahajan A, Cameron P, Currie C, McKendrick IJ, Wallis TS, Smith DGE, Stevens MP. 2007. EspP, a type V-secreted serine protease of enterohaemorrhagic Escherichia coli O157:H7, influences intestinal colonization of calves and adherence to bovine primary intestinal epithelial cells. FEMS Microbiology Letters. 271:258-264. Abstract

Kvarnstr M, Glasbey CA. 2007. Estimation of centres and radial intensity profiles of spherical nano-particles in digital microscopy. Biometrical Journal. 49:300-311. Abstract

Cook AR, Otten W, Marion G, Gibson GJ, Gilligan CA. 2007. Estimation of multiple transmission rates for epidemics in heterogeneous populations. Proceedings of the National Academy of Sciences, USA. 104:20392-20397. Abstract

Usher KM, Bergman B, Raven JA. 2007. Exploring cyanobacterial mutualisms. Annual Review of Ecology Evolution and Systematics. 38:255-273. Abstract

Grant OM, Tronina L, Jones HG, Chaves MM. 2007. Exploring thermal imaging variables for the detection of stress responses in grapevine under different irrigation regimes. Journal of Experimental Botany. 58:815-825. Abstract

Butler A, Heffernan JE, Tawn JA, Flather RA, Horsburgh KJ. 2007. Extreme value analysis of decadal variations in storm surge elevations. Journal of Marine Systems. 67:189-200. Abstract

Forster BP, Tuvesson S, Weyen J. 2007. Foreword: Gametic cells and molecular breeding for crop improvement. Euphytica. 158:273-274. Abstract

Jing R, Johnson R, Seres A, Kiss G, Ambrose MJ, Knox MR, Ellis THN, Flavell AJ. 2007. Gene-based sequence diversity analysis of field pea (Pisum). Genetics. 177:2263-2275. Abstract

Sanz AM, Gonzalez SG, Syed NH, Suso MJ, Salda CC, Flavell AJ. 2007. Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers. Molecular Genetics and Genomics. 278:433-441. Abstract

Chesnay C, Kumar A, Pearce SR. 2007. Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract

M C, Crosley LK, Nicol F, Beckett GJ, Howie AF, Hill KE, Horgan GW, Mathers JC, Arthur JR, Hesketh JE. 2007. Genetic polymorphisms in the human selenoprotein P gene determine the response of selenoprotein markers to selenium supplementation in a gender-specific manner (the SELGEN study). FASEB Journal. 21:3063-3074. Abstract

Sims M, Elston DA, Larkham A, Nussey DH, Albon SD. 2007. Identifying when weather influences life-history traits of grazing herbivores. Journal of Animal Ecology. 76:761-770. Abstract

Eaton SL, Rocchi M, Gonz L, Hamilton S, Finlayson J, Sales J, Jeffrey M, Steele PJ, Dagliesh MP, Rodger SM et al.. 2007. Immunological differences between susceptible and resistant sheep during the preclinical phase of scrapie infection. Journal of General Virology. 88:1384-1391. Abstract

Lobley GE, Bremner DM, Holtrop G, Johnstone AM, Maloney C. 2007. Impact of high protein diets with either moderate or low carbohydrate on weight loss, body composition, blood pressure and glucose tolerance in rats. British Journal of Nutrition. 97:1099-1108. Abstract

Belenguer A, Duncan SH, Holtrop G, Anderson SE, Lobley GE, Flint HJ. 2007. Impact of pH on lactate formation and utilization by human fecal microbial communities. Applied and Environmental Microbiology. 73:6526-6533. Abstract

Naylor SW, Nart P, Sales J, Flockhart A, Gally DL, Low JC. 2007. Impact of the direct application of therapeutic agents to the terminal recta of experimentally colonized calves on Escherichia coli O157: H7 shedding. Applied and Environmental Microbiology. 73:1493-1500. Abstract

Sims M, Elston DA, Harris MP, Wanless S. 2007. Incorporating variance uncertainty into a power analysis of monitoring designs. Journal of Agricultural Biological and Environmental Statistics. 12:236-249. Abstract

Singh BK, Munro S, Potts JM, Millard P. 2007. Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils. Applied Soil Ecology. 36:147-155. Abstract

Sales J, Vali L, Hoyle DV, Yates CM, Amyes SGB, McKendrick IJ. 2007. The interaction between dam methylation sites and Xha1 restriction digest sites in Escherichia coli O157: H7 EDL933. Journal of Applied Microbiology. 102:820-825. Abstract

Kim S-H, MacFarlane SA, Kalinina NO, Rakitina DV, Ryabov E, Gillespie T, Haupt S, Brown JWS, Taliansky ME. 2007. Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.

Rommens CM, Haring MA, Swords K, Davies HV, Belknap WR. 2007. The intragenic approach as a new extension to traditional plant breeding. Trends in Plant Science. 12:397-403. Abstract

Andrews M, Raven JA, Sprent JI, Lea PJ. 2007. Is shoot growth correlated to leaf protein concentration? Trends in Plant Science. 12:531-532. Abstract

Allcroft DJ, Glasbey CA, Paulo MJ. 2007. A latent Gaussian model for multivariate consumption data. Food Quality and Preference. 18:508-516. Abstract

Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al.. 2007. Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.

Chaerle L, Leinonen I, Jones HG, van der Straeten D. 2007. Monitoring and screening plant populations with combined thermal and chlorophyll fluorescence imaging. Journal of Experimental Botany. 58:773-784. Abstract

Jones HG. 2007. Monitoring plant and soil water status: established and novel methods revisited and their relevance to studies of drought tolerance. Journal of Experimental Botany. 58:119-130. Abstract

Caumette G, Ouypornkochagorn S, Scrimgeour CM, Raab A, Feldmann J. 2007. Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract

Matheson LA, Loren A, Hanton SL, Rossi M, Latijnhouwers M, Stefano G, Renna L, Brandizzi F. 2007. Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the golgi matrix. Plant Physiology. 143:1615-1627.

Wilson MR, Foucaud L, Barlwo PG, Hutchison GR, Sales J, Simpson RJ, Stone V. 2007. Nanoparticle interactions with zinc and iron: Implications for toxicology and inflammation. Toxicology and Applied Pharmacology. 225:80-89. Abstract

Krishnarajah I, Marion G, Gibson G. 2007. Novel bivariate moment-closure approximations. Mathematical Biosciences. 208:621-643. Abstract

Li X, Halpin C, Ryan MD. 2007. A novel cleavage site within the potato leafroll virus P1 polyprotein. Journal of General Virology. 88:1620-1623. Abstract

Cockell CS, Raven JA. 2007. Ozone and life on the Archaean earth. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1889-1901. Abstract

Stamati K, Hollingsworth PM, Russell JR. 2007. Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract

Judge J, Davidson RS, Marion G, White PCL, Hutchings MR. 2007. Persistence of Mycobacterium avium subspecies paratuberculosis in rabbits: the interplay between horizontal and vertical transmission. Journal of Applied Ecology. 44:302-311. Abstract

Giordano M, Norici A, Gilmour DJ, Raven JA. 2007. Physiological responses of the green alga Dunaliella parva (Volvocales, Chlorophyta) to controlled incremental changes in the N source. Functional Plant Biology. 34:925-934. Abstract

Carfrae JA, Sheppard LJ, Raven JA, Leith ID, Crossley A. 2007. Potassium and phosphorus additions modify the response of Sphagnum capillifolium growing on a Scottish ombrotrophic bog to enhanced nitrogen deposition. Applied Geochemistry. 22:1111-1121. Abstract

McCue KF, Allen PV, Shepherd LVT, Blake A, Maccree MM, Rockhold DR, Novy RG, Stewart D, Davies HV, Belknap WR. 2007. Potato glycosterol rhamnosyltransferase, the terminal step in triose side-chain biosynthesis. Phytochemistry. 68:327-334. Abstract

Christie WW, Dobson G, Adlof RO. 2007. A practical guide to the isolation, analysis and identification of conjugated linoleic acid. Lipids. 42:1073-1084. Abstract

Laurenson K, McKendrick IJ, Reid HW, Challenor R, Mathewson GK. 2007. Prevalence, spatial distribution and the effect of control measures on louping-ill virus in the Forest of Bowland, Lancashire. Epidemiology and Infection. 135:963-973. Abstract

Szili-Kovacs T, Torok K, Tilston EL, Hopkins DW. 2007. Promoting microbial immobilization of soil nitrogen during restoration of abandoned agricultural fields by organic additions. Biology and Fertility of Soils. 43:823-828.

Zahra R, Blackwood JK, Sales J, Leach DRF. 2007. Proofreading and secondary structure processing determine the orientation dependence of CAG CTG trinucleotide repeat instability in Escherichia coli. Genetics. 176:27-41. Abstract

Hughes V, Smith S, Garcia-Sanchez A, Sales J, Stevenson K. 2007. Proteomic comparison of Mycobacterium avium subspecies paratuberculosis grown in vitro and isolated from clinical cases of ovine paratuberculosis. Microbiology. 153:196-206. Abstract

Moran D, McVittie A, Allcroft DJ, Elston DA. 2007. Quantifying public preferences for agri-environmental policy in Scotland: a comparison on methods. Ecological Economics. 63:42-53. Abstract

Albon SD, Brewer MJ, O'Brien S, Nolan AJ, Cope D. 2007. Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44:1176-1187. Abstract

Stasik O, Jones HG. 2007. Response of photosynthetic apparatus to moderate high temperature in contrasting wheat cultivars at different oxygen concentrations. Journal of Experimental Botany. 58:2133-2143. Abstract

Scott D, Welch D, van der Wal R, Elston DA. 2007. Response of the moss Racomitrium lanuginosum to changes in sheep grazing and snow-lie due to a snow-fence. Applied Vegetation Science. 10:229-238. Abstract

Poulsen M, Schroder M, Wilcks A, Kroghsbo S, Lindecrona RH, Miller A, Frenzel T, Danier J, Rychlik M, Shu QY et al.. 2007. Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract

Horgan GW. 2007. Sample size and replication in 2D gel electrophoresis studies. Journal of Proteome Research. 6:2884-2887. Abstract

Mitchell A, Oommen M, Bhatia P, Scott P, Robertson ZC, Stewart D, McDougall GJ, Wallace HM. 2007. Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract

Leitch ECM, Walker AW, Duncan SH, Holtrop G, Flint HJ. 2007. Selective colonization of insoluble substrates by human faecal bacteria. Environmental Microbiology. 9:667-679. Abstract

Syed NH, Flavell AJ. 2007. Sequence-specific amplification polymorphisms (SSAPs): a multi-locus approach for analyzing transposon insertions. Nature Protocols. 1:2746-2752.

Wood JC, McKendrick IJ, Gettingby G. 2007. A simulation model to assess herd-level intervention strategies against E. coli O157. Epidemiology and Infection. 135:749-764. Abstract

Cerm J, Gasp J, De Lorenzi F, Jones HG. 2007. Stand biometry and leaf area distribution in an old olive grove at Andria, southern Italy. Annals of Forest Science. 64:491-501. Abstract

Krivtsov V, Garside A, Brendler A, Liddell K, Griffiths BS, Staines HJ. 2007. A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology. 57:467-484. Abstract

Jing R, Bolshakov V, Flavell AJ. 2007. The tagged microarray marker (TAM) method for high-throughput detection of single nucleotide and indel polymorphisms. Nature Protocols. 2:168-177.

Broadley MR, White PJ, Hammond JP, Zelko I, Lux A. 2007. Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract

Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ. 2007. Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Traffic. 8:21-31. Abstract

Hackett CA, Milne I, Bradshaw JE, Luo ZW. 2007. TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract

Cooke DEL, Schena L, Cacciola SO. 2007. Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract

Raven JA, Crane P. 2007. Trees. Current Biology. 17:R303-R304. Abstract

Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell AJ, Leroy P, Morgante M, Panaud O, Paux E et al.. 2007. A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics. 8:973-982. Abstract

Andrews M, Scholefield D, Abberton MT, McKenzie BA, Hodge S, Raven JA. 2007. Use of white clover as an alternative to nitrogen fertiliser for dairy pastures in nitrate vulnerable zones in the UK: productivity, environment impact and economic considerations. Annals of Applied Biology. 151:11-23. Abstract

Swain DL, Hutchings MR, Marion G. 2007. Using a spatially explicit model to understand the impact of search rate and search distance on spatial heterogeneity within an herbivore grazing system. Ecological Modelling. 203:319-326. Abstract

2008

Davies HV, Bryan GJ, Taylor MA. 2008. Advances in functional genomics and genetic modification of potato (Review). Potato Research. 51:283-299. Abstract

Marion G, Smith LA, Swain DL, Davidson RS, Hutchings MR. 2008. Agent-based modelling of foraging behaviour: the impact of spatial heterogeneity on disease risks from faeces in grazing systems. Journal of Agricultural Science. 146:507-520. Abstract

Simpson CG, Lewandowska D, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol JW, Raczynska D, Jarmolowski A, Barta A et al.. 2008. Alternative splicing in plants. Biochemical Society Transactions. 36:508-510.

Wattegedera S, Rocchi M, Sales J, Howard CJ, Hope JC, Entrican G. 2008. Antigen-specific peripheral immune responses are unaltered during normal pregnancy in sheep. Journal of Reproductive Immunology. 77:171-178. Abstract

Beattie JH, Gordon MJ, Rucklidge GJ, Reid MD, Duncan GJ, Horgan GW, Cho YE, Kwun IS. 2008. Aorta protein networks in marginal and acute zinc deficiency. Proteomics. 8:2126-2135. Abstract

Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Francia E, Pecchioni N, Li Destri O, Akar T et al.. 2008. Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.

Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Pecchioni N, Tondelli A, Akar T, Al-Yassin A et al.. 2008. Changes in allele frequencies in landraces, old and modern barley cultivars of marker loci close to QTL for grain yield under high and low input conditions. Euphytica. 163:435-447. Abstract

Kilminster KL, Walker DI, Thompson PA, Raven JA. 2008. Changes in growth, internode distance and nutrient concentrations of the seagrass Halophila ovalis with exposure to sediment sulphide. Marine Ecology-Progress Series. 361:83-91. Abstract

Ram JC, Woche SK, Bachmann J, Goebel MO, Hallett PD. 2008. Comparing capillary rise contact angles of soil aggregates and homogenised soil. Geoderma. 146:336-343. Abstract

Abecia L, Balcells J, Fondevila M, Belenguer A, Holtrop G, Lobley GE. 2008. Contribution of gut microbial lysine to liver and milk amino acids in lactating does. British Journal of Nutrition. 100:977-983.

White PCL, B M, Marion G, Hutchings MR. 2008. Control of bovine tuberculosis in British livestock: there is no 'silver bullet'. Trends in Microbiology. 16:420-427. Abstract

Shi B-J, Symons RH, Palukaitis P. 2008. The cucumovirus 2b gene drives selection of inter-viral recombinants affecting the crossover site, the acceptor RNA and the rate of selection. Nucleic Acids Research. 36:1057-1071. Abstract

Donn S, Griffiths BS, Neilson R, Daniell TJ. 2008. DNA extraction from soil nematodes for multi-sample community studies. Applied Soil Ecology. 38:20-26. Abstract

Sneddon AA, Tsofliou F, Fyfe CL, Matheson I, Jackson DM, Horgan GW, Winzell MS, Wahle KWJ, Ahren B, Williams LM. 2008. Effect of a conjugated linoleic acid and omega-3 fatty acid mixture on body composition and adiponectin. Obesity. 16:1019-1024. Abstract

Zazzo A, Moloney AP, Monahan FJ, Scrimgeour CM, Schmidt O. 2008. Effect of age and food intake on dietary carbon turnover recorded in sheep wool. Rapid Communications in Mass Spectrometry. 22:2937-2945. Abstract

Davidson RS, Marion G, Hutchings MR. 2008. Effects of host social hierarchy on disease persistence. Journal of Theoretical Biology. 253:424-433. Abstract

Gunn GJ, Hall M, Hunter EA, Low JC. 2008. Evaluation of a survey approach to estimating the prevalence of cattle carrying antimicrobial-resistant Escherichia coli. Veterinary Journal. 175:416-418. Abstract

Cousens C, Graham M, Sales J, Dagleish MP. 2008. Evaluation of the efficacy of clinical diagnosis of ovine pulmonary adenocarcinoma. Veterinary Record. 162:88-90. Abstract

Raven JA, Cockell CS, de La Rocha CL. 2008. The evolution of inorganic carbon concentrating mechanisms in photosynthesis. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 363:2641-2650. Abstract

Roberts AMI. 2008. Exploring relationships between phenological and weather data using smoothing. International Journal of Biometeorology. 52:463-470. Abstract

Chatterjee A, Horgan GW, Theobald CM. 2008. Exposure assessment for pesticide intake from multiple food products: a Bayesian latent-variable approach. Risk Analysis. 28:1727-1736. Abstract

Ducreux LJM, Morris WL, Prosser IM, Morris JA, Beale MH, Wright F, Shepherd T, Bryan GJ, Hedley PE, Taylor MA. 2008. Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes. Journal of Experimental Botany. 59:4219-4231. Abstract

Artz RRE, Chapman SJ, Robertson AHJ, Potts JM, Laggoun-D F, Gogo S, Comont L, Disnar JR, Francez AJ. 2008. FTIR spectroscopy can be used as a screening tool for organic matter quality in regenerating cutover peatlands. Soil Biology & Biochemistry. 40:515-527. Abstract

M C, Crosley LK, Nicol F, Horgan GW, Mathers JC, Arthur JR, Hesketh JE. 2008. Functional effects of a common single-nucleotide polymorphism (GPX4c718t) in the glutathione peroxidase 4 gene: Interaction with sex. American Journal of Clinical Nutrition. 87:1019-1027. Abstract

Kloosterman B, De Koeyer D, Griffiths R, Flinn B, Steuernagel B, Scholz U, Sonnewald S, Sonnewald U, Bryan GJ, Prat S et al.. 2008. Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Functional & Integrative Genomics. 8:329-340. Abstract

Smykal P, Hybl M, Corander J, Jarkovsky J, Flavell AJ, Griga M. 2008. Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis. Theoretical and Applied Genetics. 117:413-424.