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2008
Kerenyi Z, Merai Z, Hiripi L, Benkovics A, Gyula P, Lacomme C, Barta E, Nagy F, Silhavy D.  2008.  Inter-kingdom conservation of mechanism of nonense-mediated mRNA decay. EMBO Journal. 27:1585-1595.
Brown JWS, Marshall DF, Echeverria M.  2008.  Intronic noncoding RNAs and splicing. Trends in Plant Science. 13:335-342. Abstract
Lyons M, Cardle L, Rostoks N, Waugh R, Flavell AJ.  2008.  Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome. Molecular Genetics and Genomics. 280:275-285. Abstract
Butler A, Glasbey CA.  2008.  A latent Gaussian model for compositional data with zeros. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:505-520. Abstract
Whybrow S, Horgan GW, Stubbs RJ.  2008.  Low-energy reporting and duration of recording period. European Journal of Clinical Nutrition. 62:1148-1150. Abstract
Solomon-Blackburn RM, Nikan J, Barker H.  2008.  Mechanism of strong resistance to Potato leafroll virus infection in a clone of potato (Solanum tuberosum). Annals of Applied Biology. 152:339-347. Abstract
Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.  2008.  Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract
Grzegorczyk M, Husmeier D, Edwards KD, Ghazal P, Millar AJ.  2008.  Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract
Morris WL, Ducreux LJM, Bryan GJ, Taylor MA.  2008.  Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.
Sharma SK, Millam S, Hedley PE, McNicol JW, Bryan GJ.  2008.  Molecular regulation of somatic embryogenesis in potato: an auxin led perspective. Plant Molecular Biology. 68:185-201. Abstract
Dennis PG, Miller AJ, Clark IM, Taylor RG, Valsami-Jones E, Hirsch PR.  2008.  A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
Baccini M, Bachmaier EM, Biggeri A, Boekschoten MV, Bouwman FG, Brennan L, Caesar R, Cinti S, Coort SL, Crosley K et al..  2008.  The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
Guilioni L, Jones HG, Leinonen I, Lhomme JP.  2008.  On the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology. 148:1908-1912.
Yahiaoui S, Igartua E, Moralejo M, Ramsay L, Molina-Cano J-L, Ciudad FJ, Lasa JM, Gracia MP, Casas AM.  2008.  Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
Mostowfizadeh-Ghalamfarsa R, Cooke DEL, Banihashemi Z.  2008.  Phytophthora parsiana sp. nov., a new high-temperature tolerant species. Mycological Research. 112:783-794. Abstract
Harrison BD.  2008.  Plant virology in the 20th century. Phytopathology. 98, Supplement:S193-S194. Abstract
Riepsamen AH, Blok VC, Phillips MS, Gibson T, Dowton M.  2008.  Poly(T) variation within mitochondrial protein-coding genes in Globodera (Nematoda : Heteroderidae). Journal of Molecular Evolution. 66:197-209. Abstract
Iglesias-Rodriguez MD, Buitenhuis ET, Raven JA, Schofield O, Poulton AJ, Gibbs S, Halloran PR, de Baar HJW.  2008.  Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
Nart P, Naylor SW, Huntley JF, McKendrick IJ, Gally DL, Low JC.  2008.  Responses of cattle to gastrointestinal colonization by Escherichia coli O157:H7. Infection and Immunity. 76:5366-5372. Abstract
Mahmood-ul-Hassan M, Gregory PJ.  2008.  The role of rainfall intensity and soil in determining rates of flow through cryoturbated chalk. Pakistan Journal of Science and Industrial Research. 51:235-241.
Brown JWS, Shaw PJ.  2008.  The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.
Holeva RC, Brown DJF, Curtis RHC, Neilson R.  2008.  Selective recovery of the virus-vector trichodorid nematode Paratrichodorus anemones from soil samples by immunomagnetic capture. European Journal of Plant Pathology. 120:85-89. Abstract
Jones MR, Raven JA, Leith ID, Cape JN, Smith RI, Fowler D.  2008.  Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology. 148:893-901. Abstract
Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D et al..  2008.  The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract
Raven JA.  2008.  Transpiration: how many functions? New Phytologist. 179:905-908. Abstract
Simpson CG, Brown JWS.  2008.  U12-dependent intron splicing in plants. Current Topics in Microbiology and Immunology. 326:61-82.
2007
Navajas EA, Lambe NR, McLean KA, Glasbey CA, Fisher AV, Charteris AJL, B L, Simm G.  2007.  Accuracy of in vivo muscularity indices measured by computed tomography and their associaton with carcass quality in lambs. Meat Science. 75:533-542. Abstract
Raven JA.  2007.  Astrobiology: Photosynthesis in watercolours. Nature. 448:-418.
Ravensdale M, Blom TJ, Gracia-Garza JA, Svircev AM, Smith RJ.  2007.  Bacteriophages and the control of Erwinia carotovora subsp. carotovora. Canadian Journal of Plant Pathology. 29:121-130.
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2007.  Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 152:1767-1774.
van Nugteren I, Hein I, Berger DK.  2007.  Development of a virus-induced gene silencing system in pearl millet. South African Journal of Botany. 73:339-339. Abstract
Tzortzakakis EA, Blok VC.  2007.  Differentiation in two populations of Meloidogyne incognita from Greece in relation to reproduction on resistant tomato and pepper. Journal of Plant Diseases and Protection. 114:276-277. Abstract
Ravirala RS, Barabote RD, Wheeler DM, Reverchon S, Tatum O, Malouf J, Liu H, Pritchard L, Hedley PE, Birch PRJ et al..  2007.  Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract
Forster BP, Tuvesson S, Weyen J.  2007.  Foreword: Gametic cells and molecular breeding for crop improvement. Euphytica. 158:273-274. Abstract
Chesnay C, Kumar A, Pearce SR.  2007.  Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract
Kim S-H, MacFarlane SA, Kalinina NO, Rakitina DV, Ryabov E, Gillespie T, Haupt S, Brown JWS, Taliansky ME.  2007.  Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.
Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al..  2007.  Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.
Caumette G, Ouypornkochagorn S, Scrimgeour CM, Raab A, Feldmann J.  2007.  Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract
Matheson LA, Loren A, Hanton SL, Rossi M, Latijnhouwers M, Stefano G, Renna L, Brandizzi F.  2007.  Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the golgi matrix. Plant Physiology. 143:1615-1627.
Stamati K, Hollingsworth PM, Russell JR.  2007.  Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
Szili-Kovacs T, Torok K, Tilston EL, Hopkins DW.  2007.  Promoting microbial immobilization of soil nitrogen during restoration of abandoned agricultural fields by organic additions. Biology and Fertility of Soils. 43:823-828.
Gooding MJ, Gregory PJ, Ford KE, Ruske RE.  2007.  Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
Velikova V, Edreva AM, Tsonev T, Jones HG.  2007.  Singlet oxygen quenching by phenylamides and their parent compounds. Zeischrift f. 62c:833-838.
Krivtsov V, Garside A, Brendler A, Liddell K, Griffiths BS, Staines HJ.  2007.  A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology. 57:467-484. Abstract
Broadley MR, White PJ, Hammond JP, Zelko I, Lux A.  2007.  Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ.  2007.  Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Traffic. 8:21-31. Abstract
Hackett CA, Milne I, Bradshaw JE, Luo ZW.  2007.  TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract
Harrison SM, Monahan FJ, Zazzo A, Bahar B, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Three-dimensional growth of bovine hoof as recorded by carbon stable isotope ratios. Rapid Communications in Mass Spectrometry. 21:3971-3976. Abstract
Cooke DEL, Schena L, Cacciola SO.  2007.  Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract
Iannetta PPM, Begg GS, Hawes C, Young MW, Russell JR, Squire GR.  2007.  Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
2006
Hamilton K, Barfoot J, Crawford KE, Simpson CG, Beaumont PC, Bownes M.  2006.  Amplification of chloroplast DNA using the polymerase chain reaction (PCR): a practical activity for secondary school students. Journal of Biological Education. 40:172-177. Abstract
Luo ZW, Zhang Z, Leach L, Zhang RM, Bradshaw JE, Kearsey MJ.  2006.  Constructing genetic linkage maps under a tetrasomic model. Genetics. 172:2635-2645. Abstract
Simons V, Morrissey JP, Latijnhouwers M, Csukai M, Cleaver A, Yarrow C, Osborn A.  2006.  Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrobial Agents and Chemotherapy. 50:2732-2740.
Krivtsov V, Bezginova T, Salmond R, Liddell K, Garside A, Thompson J, Palfreyman JW, Staines HJ, Brendler A, Griffiths BS et al..  2006.  Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland. Forestry. 79:201-216. Abstract
Krivtsov V, Garside A, Bezginova T, Thompson J, Palfreyman JW, Salmond R, Liddell K, Brendler A, Griffiths BS, Watling R et al..  2006.  Ecological study of the forest litter meiofauna of a unique Scottish woodland. Animal Biology. 56:69-93. Abstract
Murillo-Amador B, Jones HG, Kaya C, Aguilar RL, Garcia-Hernandez JL, Troyo-Di E, Avila-Serrano NY, Rueda-Puente E.  2006.  Effects of foliar application of calcium nitrate on growth and physiological attributes of cowpea (Vigna unguiculata L.Walp.) grown under salt stress. Environmental and Experimental Botany. 58:188-196.
Leinonen I, Grant OM, Tagliavia CPP, Chaves MM, Jones HG.  2006.  Estimating stomatal conductance with thermal imagery. Plant Cell and Environment. 29:1508-1518.
Caldwell KS, Russell JR, Langridge P, Powell W.  2006.  Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics. 172:557-567. Abstract
Karanastasi E, Neilson R, Decraemer W.  2006.  First record of two trichodorid nematode species Paratrichodorus minor and Trichodorus sparsus (Nematoda: Trichodoridae Thorne 1935) from Greece. Annals of the Benaki Phytopathological Institute. 20:129-133.
Blok VC, Chapman S, Armstrong MR, Phillips M, Lilley C, Urwin P, Blanchard A, Grenier E, Jones JT.  2006.  Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
Nunan N, Ritz K, Rivers M, Feeney D, Young IM.  2006.  Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract
Zhang X, Johnson SN, Gregory PJ, Crawford JW, Young IM, Murray PJ, Jasinka E.  2006.  Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui AH, Zhan J, McDonald BA.  2006.  Pathogen evolution in response to host resistance genes: Evidence from field experiments with Rhynchosporium secalis on barley. Phytopathology. 96:S2-S2.
Raven JA.  2006.  Sensing inorganic carbon: C02 and HCO3. Biochemical Journal. 396:e5-e7.
Cacciola SO, Spica D, Cooke DEL, Raudino F, San Lio GMD.  2006.  Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract
2005
Norra S, Handley LL, Berner Z, St D.  2005.  13C and 15N natural abundances of urban soils and herbaceous vegetation in Karlsruhe, Germany. European Journal of Soil Science. 56:607-620. Abstract
Fargette M, Lollier V, Phillips M, Blok VC, Frutos R.  2005.  AFLP analysis of the genetic diversity of Meloidogyne chitwoodi and M. fallax, major agricultural pests. Comptes Rendus Biologies. 328:455-462. Abstract
Raven JA, Ball LA, Beardall J, Giordano M, Maberly SC.  2005.  Algae lacking carbon concentrating mechanisms. Canadian Journal of Botany. 83:879-890.
Hetherington AM, Raven JA.  2005.  The biology of carbon dioxide. Current Biology. 15:406-410.
Molina-Cano J-L, Russell JR, Moralejo MA, Escacena JL, Arias G, Powell W.  2005.  Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics. 110:613-619.
Bychek EA, Dobson G, Harwood JL, Guschina IA.  2005.  Daphnia magna can tolerate short-term starvation without major changes in lipid metabolism. Lipids. 40:599-608. Abstract
Zhang X, Deeks LK, Bengough AG, Crawford JW, Young IM.  2005.  Determination of soil hydraulic conductivity with the lattice Boltzmann method and soil thin-section technique. Journal of Hydrology. 306:59-70.
Parr AJ, Mellon FA, Colquhoun IJ, Davies HV.  2005.  Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling. Journal of Agricultural and Food Chemistry. 53:5461-5466. Abstract
van Haren JLM, Handley LL, Biel KY, Kudeyarov VN, McLain JET, Martens DA, Colodner DC.  2005.  Drought-induced nitrous oxide flux dynamics in an enclosed tropical forest. Global Change Biology. 11:1247-1257. Abstract
Krivtsov V, Liddell K, Bezginova T, Salmond R, Staines HJ, Watling R, Garside A, Thompson JA, Griffiths BS, Brendler A.  2005.  Forest litter bacteria: relationships with fungi, microfauna, and litter composition over a winter-spring period. Polish Journal of Ecology. 53:383-394. Abstract
Naglreiter C, Reichenauer TG, Goodman BA, Bolh HR.  2005.  Free radical generation in Pinus sylvestris and Larix decidua seeds primed with polyethylene glycol or potassium salt solutions. Plant Physiology and Biochemistry. 43:117-123. Abstract
Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR, Powell W.  2005.  Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract
Kremer L, de Chastellier C, Dobson G, Gibson KJC, Bifani P, Balor S, Gorvel J-P, Locht C, Minnikin DE, Besra GS.  2005.  Identification and structural characterisation of an unusual mycobaterial monomycoyldiacyglycerol. Molecular Microbiology. 57:1113-1126.
Casa R, Jones HG.  2005.  LAI retrieval from multiangular image classification and inversion of a ray tracing model. Remote Sensing of Environment. 98:414-428.
Bisognin DA, Douches DS, Buszka L, Bryan GJ, Wang D.  2005.  Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract
Millam S, Obert B, Pret'ov A.  2005.  Plant cell and biotechnology studies in Linum usitatissimum - a review. Plant Cell, Tissue and Organ Culture. 82:93-103. Abstract
Hinsinger P, Gobran GR, Gregory PJ, Wenzel WW.  2005.  Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract
Forbes GA, Chac MG, Kirk HG, Huarte MA, Van Damme M, Distel S, Mackay GR, Stewart HE, Lowe R, Duncan JM et al..  2005.  Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
Syed NH, Sureshsundar S, Wilkinson MJ, Bhau BS, Cavalcanti JJV, Flavell AJ.  2005.  Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.