Publications list
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2006.
Contribution of gut microbial lysine to liver and milk amino acids in lactating does. British Journal of Nutrition. 100:977-983.
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2008.
Positive plant microbial interactions. Annals of Applied Biology. 157:317-320.
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2010.
Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.
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2009.
Nitrogen use efficiency. 3. Nitrogen fixation: genes and costs. Annals of Applied Biology. 155:1-13.
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2009.
Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues. Molecular Microbiology. 74:662-671.
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2009.
Evaluating soil stabilisation by biological processes using step-wise aggregate fractionation. Soil and Tillage Research. 102:209-215.
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2009.
The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
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2008.
Long-term trends in hydro-climatology of a major Scottish mountain river. Science of the Total Environment. 407:4633-4641.
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2009.
Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
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2009.
Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.
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2010.
Comparison of genome sequence of PVY isolates with biological properties. American Journal of Potato Research. 86:227-238.
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2009.
The development of immune responses in Balb/c mice following inoculation with attenuated or virulent Neospora caninum tachyzoites. Parasite Immunology. 31:392-401.
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2009.
Regression analysis of spatial data. Ecology Letters. 13:246-264.
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2010.
Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton. New Phytologist. 181:295-309.
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2009.
Aorta protein networks in marginal and acute zinc deficiency. Proteomics. 8:2126-2135. Abstract
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2008.
Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.
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2010.
Detection of lactobacillic acid in low erucic rapeseed oil - A note of caution when quantifying cyclic fatty acid monomers in vegetable oils. Chemistry and Physics of Lipids. 163:698-702.
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2010.
F-actin dynamics in Neurospora crassa. Eukaryotic Cell. 9:547-557.
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2010.
Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health. 10:-423.
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2010.
A graphical method for dating chicks using bivariate body measurements. Journal of Agricultural, Biological and Environmental Statistics. 14:443-451.
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2009.
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2010.
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2010.
Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract
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2005.
Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
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2006.
Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
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2009.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
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2010.
Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
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2007.
Shoot zinc (Zn) concentration varies widely within Brassica oleracea L. and is affected by soil Zn and phosphorus (P) levels. Journal of Horticultural Science & Biotechnology. 85:375-380.
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2010.
The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.
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2008.
The effects of host age on follicular dendritic cell status dramatically impair scrapie agent neuroinvasion in aged mice. Journal of Immunology. 183:5199-5207.
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2009.
Intronic noncoding RNAs and splicing. Trends in Plant Science. 13:335-342. Abstract
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2008.
The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract
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2008.
The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
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2010.
Genomic resources and tools for gene function analysis in potato. International Journal of Plant Genomics. 2008:-216513.
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2008.
A latent Gaussian model for compositional data with zeros. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:505-520. Abstract
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2008.
Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
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2009.
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2005.
Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract
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2006.
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2006.
Climate change effects on physiology and population processes of hosts and vectors that influence the spread of hemipteran-borne plant viruses. Global Change Biology. 15:1884-1894.
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2009.
Signaling in induced resistance. Advances in Virus Research. 76:57-121.
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2010.
LAI retrieval from multiangular image classification and inversion of a ray tracing model. Remote Sensing of Environment. 98:414-428.
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2005.
Estimation of maize canopy properties from remote sensing by inversion of 1-D and 4-D models. Precision Agriculture. 11:319-334.
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2010.
Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract
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2007.
An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One. 5:-e8598.
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2010.
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2008.
Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract
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2007.
Advances in imaging RNA in plants. Trends in Plant Science. 15:196-203.
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2010.
Movement of newly assimilated 13C carbon in the grass Lolium perenne and its incorporation into rhizosphere microbial DNA. Rapid Communications in Mass Spectrometry. 24:535-540.
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2010.
Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
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2009.
Cryptic photosynthesis - extrasolar planetary oxygen without a surface biological signature. Astrobiology. 9:623-636.
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2009.
Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.
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2010.
The pros and cons of ITS-based phylogenetic analysis for the genus Phytophthora: current status and future vision. Phytopathology. 96:S134-S134.
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2006.
Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract
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2007.
Estimating the annual number of breeding attempts from breeding dates using mixture models. Ecology Letters. 12:1184-1193.
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2009.
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2010.
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2009.
Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
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2009.
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2009.
Heading date QTL in a spring x winter barley cross evaluated in Mediterranean environments. Molecular Breeding. 21:455-471. Abstract
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2008.
Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
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2009.
Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.
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2010.
Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.
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2010.
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2007.
Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
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2009.
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
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2010.
Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
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2009.
A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
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2008.
Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.
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2008.
Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.
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2010.
Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnology and Oceanography. 54:823-836.
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2009.
DNA extraction from soil nematodes for multi-sample community studies. Applied Soil Ecology. 38:20-26. Abstract
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2008.
Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
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2010.
Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.
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2010.
Human colonic microbiota associated with diet, obesity and weight loss. International Journal of Obesity. 32:1720-1724.
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2008.
Coordination of plant cell division and expansion in a simple morphogenetic system. Proceedings of the National Academy of Sciences, USA. 107:2711-2716.
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2010.
CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.
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2009.
Closure threat to key museum research facility. Nature. 465:-1005.
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2010.
Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
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2010.
AFLP analysis of the genetic diversity of Meloidogyne chitwoodi and M. fallax, major agricultural pests. Comptes Rendus Biologies. 328:455-462. Abstract
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2005.
Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
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2010.
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2010.
Is the growth rate hypothesis applicable to microalgae? Journal of Phycology. 46:1-12.
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2010.
Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
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2005.
Foreword: Gametic cells and molecular breeding for crop improvement. Euphytica. 158:273-274. Abstract
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2007.
Evaluating energy intake measurement in free-living subjects: when to record and for how long? Public Health Nutrition. 13:172-180.
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2010.
Geomicrobiology of eukaryotic microorganisms. Geomicrobiology Journal. 27:491-519.
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2010.
Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
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2009.
Efficiency of functional regression estimators for combining multiple laser scans of cDNA microarrays. Biometrical Journal. 51:45-55.
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2009.
Automated saccharification assay for determination of digestibility in plant materials. Biotechnology for Biofuels. 3:-23.
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2010.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
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2009.
Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
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2007.
The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.
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2010.
Climate change and the current 'food crisis'. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 3, 090:1-10. Abstract
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2008.
Towards an understanding of how RxLR-effector proteins are translocated from oomycetes into host cells. Fungal Genetics Reviews. 24:27-36.
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2010.
Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract
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2008.
Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move. Machine Learning. 71:265-305. Abstract
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2008.
Modelling nonstationary gene regulatory processes. Advances in Bioinformatics. :-749848.
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2010.
On the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology. 148:1908-1912.
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2008.
TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract
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2007.
Biohydrology: coupling biology and soil hydrology from pores to landscapes preface. Ecohydrology. 3:379-381.
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2010.
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2005.
Amplification of chloroplast DNA using the polymerase chain reaction (PCR): a practical activity for secondary school students. Journal of Biological Education. 40:172-177. Abstract
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2006.
Drought-induced nitrous oxide flux dynamics in an enclosed tropical forest. Global Change Biology. 11:1247-1257. Abstract
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2005.
Three-dimensional growth of bovine hoof as recorded by carbon stable isotope ratios. Rapid Communications in Mass Spectrometry. 21:3971-3976. Abstract
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2007.
Plant virology in the 20th century. Phytopathology. 98, Supplement:S193-S194. Abstract
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2008.
The response of organic matter mineralisation to nutrient and substrate additions in subarctic soils. Soil Biology & Biochemistry. 42:92-100.
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2010.
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2009.
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2010.
The biology of carbon dioxide. Current Biology. 15:406-410.
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2005.
Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract
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2005.
Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
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2010.
Selective recovery of the virus-vector trichodorid nematode Paratrichodorus anemones from soil samples by immunomagnetic capture. European Journal of Plant Pathology. 120:85-89. Abstract
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2008.
Prevalence of Pasteurella multocida and other respiratory pathogens in the nasal tract of Scottish calves. Veterinary Record. 167:555-560.
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2010.
Immunogenicity of proteome-determined Mycobacterium avium subsp paratuberculosis-specific proteins in sheep with Paratuberculosis. Clinical and Vaccine Immunology. 15:1824-1833.
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2008.
Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.
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2009.
Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
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2007.
Development of retrotransposon-based SSAP molecular marker system for study of genetic diversity in sea holly (Eryngium maritimum L.). Plant Genetic Resources - Characterization and Utilization. 8:258-266.
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2010.
Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
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2008.
NAM-1gene polymorphism and grain protein content in Hordeum. Journal of Plant Physiology. 167:497-501.
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2010.
Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract
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2008.
The tagged microarray marker (TAM) method for high-throughput detection of single nucleotide and indel polymorphisms. Nature Protocols. 2:168-177.
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2007.
Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology. 148:893-901. Abstract
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2008.
Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
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2009.
Can water droplets on leaves cause leaft scorch? New Phytologist. 185:865-867.
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2010.
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
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2010.
First record of two trichodorid nematode species Paratrichodorus minor and Trichodorus sparsus (Nematoda: Trichodoridae Thorne 1935) from Greece. Annals of the Benaki Phytopathological Institute. 20:129-133.
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2006.
BacA is essential for bacteroid development in nodules of galegoid, but not phaseoloid, legumes. Journal of Bacteriology. 192:2920-2928.
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2010.
Inter-kingdom conservation of mechanism of nonense-mediated mRNA decay. EMBO Journal. 27:1585-1595.
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2008.
Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
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2009.
Changes in growth, internode distance and nutrient concentrations of the seagrass Halophila ovalis with exposure to sediment sulphide. Marine Ecology-Progress Series. 361:83-91. Abstract
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2008.
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2009.
Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.
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2007.
Localization of eIF4A-III in the nucleolus and splicing speckles is an indicator of plant stress. Plant Signaling & Behavior. 4:1148-1151.
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2009.
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2009.
Identification and structural characterisation of an unusual mycobaterial monomycoyldiacyglycerol. Molecular Microbiology. 57:1113-1126.
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2005.
Forest litter bacteria: relationships with fungi, microfauna, and litter composition over a winter-spring period. Polish Journal of Ecology. 53:383-394. Abstract
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2005.
A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology. 57:467-484. Abstract
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2007.
Ecological study of the forest litter meiofauna of a unique Scottish woodland. Animal Biology. 56:69-93. Abstract
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2006.
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2006.
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2010.
The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology. 257:696-703.
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2009.
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2007.
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2009.
The identification and detection of Spongospora subterranea and factors affecting infection and disease. American Journal of Potato Research. 85:247-252. Abstract
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2008.
Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
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2009.
Estimating stomatal conductance with thermal imagery. Plant Cell and Environment. 29:1508-1518.
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2006.
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2009.
Symptom induction and RNA silencing suppression by the cucumber mosaic virus 2b protein. Plant Signaling & Behaviour. 5:705-708.
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2010.
Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV. Molecular Plant-Microbe Interactions. 22:630-641.
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2009.
Diversity of human colonic butyrate-producing bacteria revealed by analysis of the butyryl-CoA:acetate CoA-transferase gene. Environmental Microbiology. 12:304-314.
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2010.
Failure to transmit scrapie infection by transferring preimplantation embryos from naturally infected donor sheep. Theriogenology. 72:809-816.
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2009.
Constructing genetic linkage maps under a tetrasomic model. Genetics. 172:2635-2645. Abstract
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2006.
Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome. Molecular Genetics and Genomics. 280:275-285. Abstract
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2008.
Inorganic carbon acquisition by chrysophytes. Journal of Phycology. 45:1052-1061.
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2009.
Identification and characterization of barley RNA-directed RNA polymerases. Biochimica et Biophysica Acta. 1789:375-385.
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2009.
The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.
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2010.
Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time. Trends in Ecology and Evolution. 25:574-582.
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2010.
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2009.
The role of rainfall intensity and soil in determining rates of flow through cryoturbated chalk. Pakistan Journal of Science and Industrial Research. 51:235-241.
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2008.
The internal domain of hordeivirus movement protein TGB1 forms in vitro filamentous structures.. Biochemistry (Moscow). 75:752-758.
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2010.
Agent-based modelling of foraging behaviour: the impact of spatial heterogeneity on disease risks from faeces in grazing systems. Journal of Agricultural Science. 146:507-520. Abstract
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2008.
Characterization of the interactions between Cucumber mosaic virus and Potato virus Y in mixed infections in tomato. Molecular Plant-Microbe Interactions. 23:1514-1524.
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2010.
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2007.
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2010.
Human provenancing based on stable isotope forensic intellgence. Science & Justice. 50:35-36.
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2010.
Plant cell and biotechnology studies in Linum usitatissimum - a review. Plant Cell, Tissue and Organ Culture. 82:93-103. Abstract
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2005.
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2009.
Is vegetation composition or soil chemistry the best predictor of the soil microbe community? Plant and Soil. 333:417-430.
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2010.
A new method to identify the fluvial regimes used by spawning salmonids. Canadian Journal of Fisheries and Aquatic Sciences. 66:1404-1408.
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2009.
Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics. 110:613-619.
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2005.
Sedimentary chemofacies characterization by means of multivariate analysis. Sedimentary Geology. 228:218-228.
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2010.
Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.
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2008.
Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology. 114:325-339.
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2010.
Phytophthora parsiana sp. nov., a new high-temperature tolerant species. Mycological Research. 112:783-794. Abstract
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2008.
New phenotyping methods for screening wheat and barley for beneficial responses to water deficit. Journal of Experimental Botany. 61:3499-3507.
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2010.
Effects of foliar application of calcium nitrate on growth and physiological attributes of cowpea (Vigna unguiculata L.Walp.) grown under salt stress. Environmental and Experimental Botany. 58:188-196.
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2006.
Free radical generation in Pinus sylvestris and Larix decidua seeds primed with polyethylene glycol or potassium salt solutions. Plant Physiology and Biochemistry. 43:117-123. Abstract
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2005.
Responses of cattle to gastrointestinal colonization by Escherichia coli O157:H7. Infection and Immunity. 76:5366-5372. Abstract
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2008.
Assessing beef carcass tissue weights using computed tomography spirals of primal cuts. Meat Science. 84:30-38.
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2010.
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2007.
Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract
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2005.
13C and 15N natural abundances of urban soils and herbaceous vegetation in Karlsruhe, Germany. European Journal of Soil Science. 56:607-620. Abstract
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2005.
HIGS: Host-induced gene silencing in the obligate biotrophic fungal pathogen Blumeria graminis. Plant Cell. 22:3130-3141.
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2010.
Development of a virus-induced gene silencing system in pearl millet. South African Journal of Botany. 73:339-339. Abstract
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2007.
Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract
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2006.
Genetic transformation of barley microspores using anther bombardment. Biotechnology Letters. 30:945-949. Abstract
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2008.
Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.
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2010.
Taxonomy of Longidorid nematodes and dichotomous keys for the identification of Xiphinema and Xiphidorus species recorded in Brazil. Arquivos Instituto Biologico. 73:131-141.
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2006.
Multiple evolutionary origins of legume traits leading to extreme rhizobial differentiation. New Phytologist. 187:508-520.
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2010.
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2009.
Effect of method of conservation of timothy on endogenous nitrogen flows in lactating dairy cows. Journal of Dairy Science. 93:4252-4261.
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2010.
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2010.
Reversible jump markov chain Monte Carlo methods and segmentation algorithms in hidden Markov models. Australian & New Zealand Journal of Statistics. 52:151-166.
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2010.
Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling. Journal of Agricultural and Food Chemistry. 53:5461-5466. Abstract
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2005.
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2009.
Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186:755-768.
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2010.
Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
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2009.