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2005
Norra S, Handley LL, Berner Z, St D.  2005.  13C and 15N natural abundances of urban soils and herbaceous vegetation in Karlsruhe, Germany. European Journal of Soil Science. 56:607-620. Abstract
Fargette M, Lollier V, Phillips M, Blok VC, Frutos R.  2005.  AFLP analysis of the genetic diversity of Meloidogyne chitwoodi and M. fallax, major agricultural pests. Comptes Rendus Biologies. 328:455-462. Abstract
Raven JA, Ball LA, Beardall J, Giordano M, Maberly SC.  2005.  Algae lacking carbon concentrating mechanisms. Canadian Journal of Botany. 83:879-890.
Hetherington AM, Raven JA.  2005.  The biology of carbon dioxide. Current Biology. 15:406-410.
Molina-Cano J-L, Russell JR, Moralejo MA, Escacena JL, Arias G, Powell W.  2005.  Chloroplast DNA microsatellite analysis supports a polyphyletic origin for barley. Theoretical and Applied Genetics. 110:613-619.
Bychek EA, Dobson G, Harwood JL, Guschina IA.  2005.  Daphnia magna can tolerate short-term starvation without major changes in lipid metabolism. Lipids. 40:599-608. Abstract
Zhang X, Deeks LK, Bengough AG, Crawford JW, Young IM.  2005.  Determination of soil hydraulic conductivity with the lattice Boltzmann method and soil thin-section technique. Journal of Hydrology. 306:59-70.
Parr AJ, Mellon FA, Colquhoun IJ, Davies HV.  2005.  Dihydrocaffeoyl polyamines (kukoamine and allies) in potato (Solanum tuberosum) tubers detected during metabolite profiling. Journal of Agricultural and Food Chemistry. 53:5461-5466. Abstract
van Haren JLM, Handley LL, Biel KY, Kudeyarov VN, McLain JET, Martens DA, Colodner DC.  2005.  Drought-induced nitrous oxide flux dynamics in an enclosed tropical forest. Global Change Biology. 11:1247-1257. Abstract
Krivtsov V, Liddell K, Bezginova T, Salmond R, Staines HJ, Watling R, Garside A, Thompson JA, Griffiths BS, Brendler A.  2005.  Forest litter bacteria: relationships with fungi, microfauna, and litter composition over a winter-spring period. Polish Journal of Ecology. 53:383-394. Abstract
Naglreiter C, Reichenauer TG, Goodman BA, Bolh HR.  2005.  Free radical generation in Pinus sylvestris and Larix decidua seeds primed with polyethylene glycol or potassium salt solutions. Plant Physiology and Biochemistry. 43:117-123. Abstract
Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR, Powell W.  2005.  Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract
Kremer L, de Chastellier C, Dobson G, Gibson KJC, Bifani P, Balor S, Gorvel J-P, Locht C, Minnikin DE, Besra GS.  2005.  Identification and structural characterisation of an unusual mycobaterial monomycoyldiacyglycerol. Molecular Microbiology. 57:1113-1126.
Casa R, Jones HG.  2005.  LAI retrieval from multiangular image classification and inversion of a ray tracing model. Remote Sensing of Environment. 98:414-428.
Bisognin DA, Douches DS, Buszka L, Bryan GJ, Wang D.  2005.  Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract
Millam S, Obert B, Pret'ov A.  2005.  Plant cell and biotechnology studies in Linum usitatissimum - a review. Plant Cell, Tissue and Organ Culture. 82:93-103. Abstract
Hinsinger P, Gobran GR, Gregory PJ, Wenzel WW.  2005.  Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract
Forbes GA, Chac MG, Kirk HG, Huarte MA, Van Damme M, Distel S, Mackay GR, Stewart HE, Lowe R, Duncan JM et al..  2005.  Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
Syed NH, Sureshsundar S, Wilkinson MJ, Bhau BS, Cavalcanti JJV, Flavell AJ.  2005.  Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.
2006
Hamilton K, Barfoot J, Crawford KE, Simpson CG, Beaumont PC, Bownes M.  2006.  Amplification of chloroplast DNA using the polymerase chain reaction (PCR): a practical activity for secondary school students. Journal of Biological Education. 40:172-177. Abstract
Luo ZW, Zhang Z, Leach L, Zhang RM, Bradshaw JE, Kearsey MJ.  2006.  Constructing genetic linkage maps under a tetrasomic model. Genetics. 172:2635-2645. Abstract
Simons V, Morrissey JP, Latijnhouwers M, Csukai M, Cleaver A, Yarrow C, Osborn A.  2006.  Dual effects of plant steroidal alkaloids on Saccharomyces cerevisiae. Antimicrobial Agents and Chemotherapy. 50:2732-2740.
Krivtsov V, Bezginova T, Salmond R, Liddell K, Garside A, Thompson J, Palfreyman JW, Staines HJ, Brendler A, Griffiths BS et al..  2006.  Ecological interactions between fungi, other biota and forest litter composition in a unique Scottish woodland. Forestry. 79:201-216. Abstract
Krivtsov V, Garside A, Bezginova T, Thompson J, Palfreyman JW, Salmond R, Liddell K, Brendler A, Griffiths BS, Watling R et al..  2006.  Ecological study of the forest litter meiofauna of a unique Scottish woodland. Animal Biology. 56:69-93. Abstract
Murillo-Amador B, Jones HG, Kaya C, Aguilar RL, Garcia-Hernandez JL, Troyo-Di E, Avila-Serrano NY, Rueda-Puente E.  2006.  Effects of foliar application of calcium nitrate on growth and physiological attributes of cowpea (Vigna unguiculata L.Walp.) grown under salt stress. Environmental and Experimental Botany. 58:188-196.
Leinonen I, Grant OM, Tagliavia CPP, Chaves MM, Jones HG.  2006.  Estimating stomatal conductance with thermal imagery. Plant Cell and Environment. 29:1508-1518.
Caldwell KS, Russell JR, Langridge P, Powell W.  2006.  Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics. 172:557-567. Abstract
Karanastasi E, Neilson R, Decraemer W.  2006.  First record of two trichodorid nematode species Paratrichodorus minor and Trichodorus sparsus (Nematoda: Trichodoridae Thorne 1935) from Greece. Annals of the Benaki Phytopathological Institute. 20:129-133.
Blok VC, Chapman S, Armstrong MR, Phillips M, Lilley C, Urwin P, Blanchard A, Grenier E, Jones JT.  2006.  Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
Nunan N, Ritz K, Rivers M, Feeney D, Young IM.  2006.  Investigating microbial micro-habitat structure using x-ray computed tomography. Geoderma. 133:398-407. Abstract
Zhang X, Johnson SN, Gregory PJ, Crawford JW, Young IM, Murray PJ, Jasinka E.  2006.  Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui AH, Zhan J, McDonald BA.  2006.  Pathogen evolution in response to host resistance genes: Evidence from field experiments with Rhynchosporium secalis on barley. Phytopathology. 96:S2-S2.
Raven JA.  2006.  Sensing inorganic carbon: C02 and HCO3. Biochemical Journal. 396:e5-e7.
Cacciola SO, Spica D, Cooke DEL, Raudino F, San Lio GMD.  2006.  Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract
2007
Navajas EA, Lambe NR, McLean KA, Glasbey CA, Fisher AV, Charteris AJL, B L, Simm G.  2007.  Accuracy of in vivo muscularity indices measured by computed tomography and their associaton with carcass quality in lambs. Meat Science. 75:533-542. Abstract
Raven JA.  2007.  Astrobiology: Photosynthesis in watercolours. Nature. 448:-418.
Ravensdale M, Blom TJ, Gracia-Garza JA, Svircev AM, Smith RJ.  2007.  Bacteriophages and the control of Erwinia carotovora subsp. carotovora. Canadian Journal of Plant Pathology. 29:121-130.
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2007.  Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 152:1767-1774.
van Nugteren I, Hein I, Berger DK.  2007.  Development of a virus-induced gene silencing system in pearl millet. South African Journal of Botany. 73:339-339. Abstract
Tzortzakakis EA, Blok VC.  2007.  Differentiation in two populations of Meloidogyne incognita from Greece in relation to reproduction on resistant tomato and pepper. Journal of Plant Diseases and Protection. 114:276-277. Abstract
Ravirala RS, Barabote RD, Wheeler DM, Reverchon S, Tatum O, Malouf J, Liu H, Pritchard L, Hedley PE, Birch PRJ et al..  2007.  Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract
Forster BP, Tuvesson S, Weyen J.  2007.  Foreword: Gametic cells and molecular breeding for crop improvement. Euphytica. 158:273-274. Abstract
Chesnay C, Kumar A, Pearce SR.  2007.  Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract
Kim S-H, MacFarlane SA, Kalinina NO, Rakitina DV, Ryabov E, Gillespie T, Haupt S, Brown JWS, Taliansky ME.  2007.  Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.
Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al..  2007.  Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.
Caumette G, Ouypornkochagorn S, Scrimgeour CM, Raab A, Feldmann J.  2007.  Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract
Matheson LA, Loren A, Hanton SL, Rossi M, Latijnhouwers M, Stefano G, Renna L, Brandizzi F.  2007.  Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the golgi matrix. Plant Physiology. 143:1615-1627.
Stamati K, Hollingsworth PM, Russell JR.  2007.  Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
Szili-Kovacs T, Torok K, Tilston EL, Hopkins DW.  2007.  Promoting microbial immobilization of soil nitrogen during restoration of abandoned agricultural fields by organic additions. Biology and Fertility of Soils. 43:823-828.
Gooding MJ, Gregory PJ, Ford KE, Ruske RE.  2007.  Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
Velikova V, Edreva AM, Tsonev T, Jones HG.  2007.  Singlet oxygen quenching by phenylamides and their parent compounds. Zeischrift f. 62c:833-838.
Krivtsov V, Garside A, Brendler A, Liddell K, Griffiths BS, Staines HJ.  2007.  A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology. 57:467-484. Abstract
Broadley MR, White PJ, Hammond JP, Zelko I, Lux A.  2007.  Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ.  2007.  Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Traffic. 8:21-31. Abstract
Hackett CA, Milne I, Bradshaw JE, Luo ZW.  2007.  TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract
Harrison SM, Monahan FJ, Zazzo A, Bahar B, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Three-dimensional growth of bovine hoof as recorded by carbon stable isotope ratios. Rapid Communications in Mass Spectrometry. 21:3971-3976. Abstract
Cooke DEL, Schena L, Cacciola SO.  2007.  Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract
Iannetta PPM, Begg GS, Hawes C, Young MW, Russell JR, Squire GR.  2007.  Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
2008
Marion G, Smith LA, Swain DL, Davidson RS, Hutchings MR.  2008.  Agent-based modelling of foraging behaviour: the impact of spatial heterogeneity on disease risks from faeces in grazing systems. Journal of Agricultural Science. 146:507-520. Abstract
Simpson CG, Lewandowska D, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol JW, Raczynska D, Jarmolowski A, Barta A et al..  2008.  Alternative splicing in plants. Biochemical Society Transactions. 36:508-510.
Beattie JH, Gordon MJ, Rucklidge GJ, Reid MD, Duncan GJ, Horgan GW, Cho YE, Kwun IS.  2008.  Aorta protein networks in marginal and acute zinc deficiency. Proteomics. 8:2126-2135. Abstract
Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Francia E, Pecchioni N, Li Destri O, Akar T et al..  2008.  Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.
Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Pecchioni N, Tondelli A, Akar T, Al-Yassin A et al..  2008.  Changes in allele frequencies in landraces, old and modern barley cultivars of marker loci close to QTL for grain yield under high and low input conditions. Euphytica. 163:435-447. Abstract
Kilminster KL, Walker DI, Thompson PA, Raven JA.  2008.  Changes in growth, internode distance and nutrient concentrations of the seagrass Halophila ovalis with exposure to sediment sulphide. Marine Ecology-Progress Series. 361:83-91. Abstract
Gregory PJ, Ingram JSI.  2008.  Climate change and the current 'food crisis'. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 3, 090:1-10. Abstract
Ram JC, Woche SK, Bachmann J, Goebel MO, Hallett PD.  2008.  Comparing capillary rise contact angles of soil aggregates and homogenised soil. Geoderma. 146:336-343. Abstract
Abecia L, Balcells J, Fondevila M, Belenguer A, Holtrop G, Lobley GE.  2008.  Contribution of gut microbial lysine to liver and milk amino acids in lactating does. British Journal of Nutrition. 100:977-983.
White PCL, B M, Marion G, Hutchings MR.  2008.  Control of bovine tuberculosis in British livestock: there is no 'silver bullet'. Trends in Microbiology. 16:420-427. Abstract
Donn S, Griffiths BS, Neilson R, Daniell TJ.  2008.  DNA extraction from soil nematodes for multi-sample community studies. Applied Soil Ecology. 38:20-26. Abstract
Zazzo A, Moloney AP, Monahan FJ, Scrimgeour CM, Schmidt O.  2008.  Effect of age and food intake on dietary carbon turnover recorded in sheep wool. Rapid Communications in Mass Spectrometry. 22:2937-2945. Abstract
Raven JA, Cockell CS, de La Rocha CL.  2008.  The evolution of inorganic carbon concentrating mechanisms in photosynthesis. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 363:2641-2650. Abstract
Smykal P, Hybl M, Corander J, Jarkovsky J, Flavell AJ, Griga M.  2008.  Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis. Theoretical and Applied Genetics. 117:413-424.
Denoys-Rothan B, Chartier P, Petit A, Gordon S, Graham J, Dolan A, Hofer M, Faedi W, Malteni M, Baruzzi G et al..  2008.  Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.
Obert B, Middlefell-Williams J, Millam S.  2008.  Genetic transformation of barley microspores using anther bombardment. Biotechnology Letters. 30:945-949. Abstract
Bryan GJ, Hein I.  2008.  Genomic resources and tools for gene function analysis in potato. International Journal of Plant Genomics. 2008:-216513.
Cuesta-Marcos A, Igartua E, Ciudad FJ, Codesal P, Russell JR, Molina-Cano J-L, Moralejo MA, Sz P, Gracia MP, Lasa JM et al..  2008.  Heading date QTL in a spring x winter barley cross evaluated in Mediterranean environments. Molecular Breeding. 21:455-471. Abstract
Qi Z, Hampton CR, Shin R, Barkla BJ, White PJ, Schachtman DP.  2008.  The high affinity K+ transporter AtHAK5 plays a physiological role in planta at very low K+ concentrations and provides a caesium uptake pathway in Arabidopsis. Journal of Experimental Botany. 59:595-607. Abstract
Duncan SH, Lobley GE, Holtrop G, Ince J, Johnstone AM, Louis P, Flint HJ.  2008.  Human colonic microbiota associated with diet, obesity and weight loss. International Journal of Obesity. 32:1720-1724.
Lees AK, van de Graaf P, Wale S.  2008.  The identification and detection of Spongospora subterranea and factors affecting infection and disease. American Journal of Potato Research. 85:247-252. Abstract
Woodhead M, McCallum S, Smith K, Cardle L, Mazzitelli L, Graham J.  2008.  Identification, characterisation and mapping of simple sequence repeat (SSR) markers from raspberry root and bud ESTs. Molecular Breeding. 22:555-563. Abstract
Hughes V, Bannantine JP, Denham S, Smith S, Garcia-Sanchez A, Sales J, Paustian ML, McLean K, Stevenson K.  2008.  Immunogenicity of proteome-determined Mycobacterium avium subsp paratuberculosis-specific proteins in sheep with Paratuberculosis. Clinical and Vaccine Immunology. 15:1824-1833.
Kerenyi Z, Merai Z, Hiripi L, Benkovics A, Gyula P, Lacomme C, Barta E, Nagy F, Silhavy D.  2008.  Inter-kingdom conservation of mechanism of nonense-mediated mRNA decay. EMBO Journal. 27:1585-1595.
Brown JWS, Marshall DF, Echeverria M.  2008.  Intronic noncoding RNAs and splicing. Trends in Plant Science. 13:335-342. Abstract
Lyons M, Cardle L, Rostoks N, Waugh R, Flavell AJ.  2008.  Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome. Molecular Genetics and Genomics. 280:275-285. Abstract
Butler A, Glasbey CA.  2008.  A latent Gaussian model for compositional data with zeros. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:505-520. Abstract
Whybrow S, Horgan GW, Stubbs RJ.  2008.  Low-energy reporting and duration of recording period. European Journal of Clinical Nutrition. 62:1148-1150. Abstract
Solomon-Blackburn RM, Nikan J, Barker H.  2008.  Mechanism of strong resistance to Potato leafroll virus infection in a clone of potato (Solanum tuberosum). Annals of Applied Biology. 152:339-347. Abstract
Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.  2008.  Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract
Grzegorczyk M, Husmeier D, Edwards KD, Ghazal P, Millar AJ.  2008.  Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract
Morris WL, Ducreux LJM, Bryan GJ, Taylor MA.  2008.  Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.
Sharma SK, Millam S, Hedley PE, McNicol JW, Bryan GJ.  2008.  Molecular regulation of somatic embryogenesis in potato: an auxin led perspective. Plant Molecular Biology. 68:185-201. Abstract
Dennis PG, Miller AJ, Clark IM, Taylor RG, Valsami-Jones E, Hirsch PR.  2008.  A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
Baccini M, Bachmaier EM, Biggeri A, Boekschoten MV, Bouwman FG, Brennan L, Caesar R, Cinti S, Coort SL, Crosley K et al..  2008.  The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
Guilioni L, Jones HG, Leinonen I, Lhomme JP.  2008.  On the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology. 148:1908-1912.
Yahiaoui S, Igartua E, Moralejo M, Ramsay L, Molina-Cano J-L, Ciudad FJ, Lasa JM, Gracia MP, Casas AM.  2008.  Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
Mostowfizadeh-Ghalamfarsa R, Cooke DEL, Banihashemi Z.  2008.  Phytophthora parsiana sp. nov., a new high-temperature tolerant species. Mycological Research. 112:783-794. Abstract
Harrison BD.  2008.  Plant virology in the 20th century. Phytopathology. 98, Supplement:S193-S194. Abstract
Riepsamen AH, Blok VC, Phillips MS, Gibson T, Dowton M.  2008.  Poly(T) variation within mitochondrial protein-coding genes in Globodera (Nematoda : Heteroderidae). Journal of Molecular Evolution. 66:197-209. Abstract
Iglesias-Rodriguez MD, Buitenhuis ET, Raven JA, Schofield O, Poulton AJ, Gibbs S, Halloran PR, de Baar HJW.  2008.  Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
Nart P, Naylor SW, Huntley JF, McKendrick IJ, Gally DL, Low JC.  2008.  Responses of cattle to gastrointestinal colonization by Escherichia coli O157:H7. Infection and Immunity. 76:5366-5372. Abstract
Mahmood-ul-Hassan M, Gregory PJ.  2008.  The role of rainfall intensity and soil in determining rates of flow through cryoturbated chalk. Pakistan Journal of Science and Industrial Research. 51:235-241.
Brown JWS, Shaw PJ.  2008.  The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.
Holeva RC, Brown DJF, Curtis RHC, Neilson R.  2008.  Selective recovery of the virus-vector trichodorid nematode Paratrichodorus anemones from soil samples by immunomagnetic capture. European Journal of Plant Pathology. 120:85-89. Abstract
Jones MR, Raven JA, Leith ID, Cape JN, Smith RI, Fowler D.  2008.  Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology. 148:893-901. Abstract
Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D et al..  2008.  The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract
Raven JA.  2008.  Transpiration: how many functions? New Phytologist. 179:905-908. Abstract
Simpson CG, Brown JWS.  2008.  U12-dependent intron splicing in plants. Current Topics in Microbiology and Immunology. 326:61-82.
Titlyanov EA, Kiyashko SI, Titlyanova TV, Kalita TL, Raven JA.  2008.  δ13C and δ15N values in reef corals Porites lutea and P. cylindrica and in their epilithic and endolithic algae. Marine Biology. 155:353-361. Abstract
2009
Song BK, Hein I, Druka A, Waugh R, Marshall DF, Nadarajah K, Yap SJ, Ratnam W.  2009.  The 172 kb genomic DNA region of the O. rufipogon ylg1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica. Functional & Integrative Genomics. 9:97-108.
Kim S-H, Koroleva OA, Lewandowska D, Pendle AF, Clark GP, Simpson CG, Shaw PJ, Brown JWS.  2009.  Aberrant mRNA transcripts and the nonsense-mediated decay proteins UPF2 and UPF3 are enriched in the Arabidopsis nucleolus. Plant Cell. 21:2045-2057.
Beardall J, Allen D, Bragg J, Finkel ZV, Flynn KJ, Quigg A, Rees TAV, Richardson A, Raven JA.  2009.  Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton. New Phytologist. 181:295-309.
Antunez-Lamas M, Cabrera E, Lopez-Solanilla E, Solano R, Gonzalez-Melendi P, Chico JM, Toth IK, Birch PRJ, Pritchard L, Liu H et al..  2009.  Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues. Molecular Microbiology. 74:662-671.
Lewis FI, Gunn GJ, McKendrick IJ, Murray FM.  2009.  Bayesian inference for within-herd prevalence of Leptospira interrogans serovar Hardjo using bulk milk antibody testing. Biostatistics. 10:719-728.
Woodward FI, Bardgett RD, Raven JA, Hetherington AM.  2009.  Biological approaches to global environmental change: mitigation and remediation. Current Biology. 19:R615-R623.
Eaton SL, Anderson MJ, Hamilton S, Gonz L, Sales J, Jeffrey M, Reid HW, Rocchi MA, Chianini F.  2009.  CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.
Prashar A, Hocking PM, Erichsen JT, Fan Q, Saw S-M, Guggenheim JA.  2009.  Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.
Barker H, McGeachy KD, Toplak N, Gruden K, Zel J, Browning I.  2009.  Comparison of genome sequence of PVY isolates with biological properties. American Journal of Potato Research. 86:227-238.
Van Toor R, Malloch G, Fenton B.  2009.  A concept for management of virus-vectors and insecticide resistance in Myzus persicae on potatoes. Redia. XCII:219-221.
Cockell CS, Kaltenegger L, Raven JA.  2009.  Cryptic photosynthesis - extrasolar planetary oxygen without a surface biological signature. Astrobiology. 9:623-636.
Cockell CS, L A, Fridlund M, Herbst TM, Kaltenegger L, Absil O, Beichman C, Benz W, Blanc M, Brack A et al..  2009.  Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
Bartley PM, Wright SE, Maley SW, Buxton D, Nath M, Innes EA.  2009.  The development of immune responses in Balb/c mice following inoculation with attenuated or virulent Neospora caninum tachyzoites. Parasite Immunology. 31:392-401.
Koroleva OA, Calder G, Pendle AF, Kim S-H, Lewandowska D, Simpson CG, Jones IM, Brown JWS, Shaw PJ.  2009.  Dynamic behaviour of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia. Plant Cell. 21:1592-1606.
Yang D, Zhang T, Zhang K, Greenwood DJ, Hammond JP, White PJ.  2009.  An easily implemented agro-hydrological procedure with dynamic root simulation for water transfer in the crop-soil system: Validation and application. Journal of Hydrology. 370:177-190. Abstract
Ramirez-Farias C, Slezak K, Fuller Z, Duncan A, Holtrop G, Louis P.  2009.  Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. British Journal of Nutrition. 101:541-550.
Wemelsfelder F, Nevison IM, Lawrence AB.  2009.  The effect of perceived environmental background on qualitative assessments of pig behaviour. Animal Behaviour. 78:477-484.
Brown KL, Wathne GJ, Sales J, Bruce ME, Mabbott NA.  2009.  The effects of host age on follicular dendritic cell status dramatically impair scrapie agent neuroinvasion in aged mice. Journal of Immunology. 183:5199-5207.
Glasbey CA, Khondoker MR.  2009.  Efficiency of functional regression estimators for combining multiple laser scans of cDNA microarrays. Biometrical Journal. 51:45-55.
Waugh R, Jannink JL, Muehlbauer GJ, Ramsay L.  2009.  The emergence of whole genome association scans in barley. Current Opinion in Plant Biology. 12:218-222.
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2009.  Erratum: Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 154:1019-1019.
Cornulier T, Elston DA, Arcese P, Benton TG, Douglas DJT, Lambin X, Reid J, Robinson RA, Sutherland WJ.  2009.  Estimating the annual number of breeding attempts from breeding dates using mixture models. Ecology Letters. 12:1184-1193.
Ashman MR, Hallett PD, Brookes PC, Allen J.  2009.  Evaluating soil stabilisation by biological processes using step-wise aggregate fractionation. Soil and Tillage Research. 102:209-215.
Lokossou AA, Park TH, van Arkel G, Arens M, Ruyter-Spira C, Morales J, Whisson SC, Birch PRJ, Visser RGF, Jacobsen E et al..  2009.  Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV. Molecular Plant-Microbe Interactions. 22:630-641.
Low JC, Chambers J, McKelvey WAC, McKendrick IJ, Jeffrey M.  2009.  Failure to transmit scrapie infection by transferring preimplantation embryos from naturally infected donor sheep. Theriogenology. 72:809-816.
Osterrieder A, Carvalho CM, Latijnhouwers M, Johansen JN, Stubbs C, Botchway S, Hawes CL.  2009.  Fluorescence lifetime imaging of interactions between Golgi tethering factors and small GTPases in plants. Traffic. 10:1034-1046.
Raven JA.  2009.  Functional evolution of photochemical energy transformations in oxygen-producing organisms. Functional Plant Biology. 36:505-515.
Bierman S, Glasbey CA.  2009.  A graphical method for dating chicks using bivariate body measurements. Journal of Agricultural, Biological and Environmental Statistics. 14:443-451.
Dimier C, Brunet C, Geider RD, Raven JA.  2009.  Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnology and Oceanography. 54:823-836.
Raven JA.  2009.  Horsetails get the wind up. New Phytologist. 184:6-9.
Madsen CT, Stephens J, Hornyik C, Shaw J, Collinge DB, Lacomme C, Albrechtsen M.  2009.  Identification and characterization of barley RNA-directed RNA polymerases. Biochimica et Biophysica Acta. 1789:375-385.
Maberly SC, Ball LA, Raven JA, S D.  2009.  Inorganic carbon acquisition by chrysophytes. Journal of Phycology. 45:1052-1061.
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Inter- and intra-specific exposure to parasites and pathogens via the faecal-oral route: a consequence of behaviour in a patchy environment. Epidemiology and Infection. 137:630-643.
Mahajan A, Currie CG, Mackie S, Tree J, McAteer S, McKendrick I, McNeilly TN, Roe A, La Ragione RM, Woodward MJ et al..  2009.  An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157:H7 with bovine intestinal epithelium. Cellular Microbiology. 11:121-137.
Torres-Ca P, Hinojosa MB, Garcia-Ruiz R, Daniell TJ, Carreira JA.  2009.  Linking biogeochemical variability and microbial community structure in forest soils: Abies pinsapo-fir forests as a study case. Ecosistemas. 18:91-102.
Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ.  2009.  Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
Smith LA, Marion G, Swain DL, White PCL, Hutchings MR.  2009.  Livestock grazing behavior and inter- versus intraspecific disease risk via the fecal-oral route. Behavioral Ecology. 20:426-432.
Koroleva OA, Brown JWS, Shaw PJ.  2009.  Localization of eIF4A-III in the nucleolus and splicing speckles is an indicator of plant stress. Plant Signaling & Behavior. 4:1148-1151.
Baggaley NJ, Langan SJ, Futter MN, Potts JM, Dunn SM.  2009.  Long-term trends in hydro-climatology of a major Scottish mountain river. Science of the Total Environment. 407:4633-4641.
Vinten AJA, Potts JM, Avery L, Strachan NJC.  2009.  Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3:744-752.
Butler A, Doherty RM, Marion G.  2009.  Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
Blower TR, Fineran PC, Johnson MJ, Toth IK, Humphreys DP, Salmond GPC.  2009.  Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
Moir HJ, Gibbins CN, Buffington JM, Webb JH, Soulsby C, Brewer MJ.  2009.  A new method to identify the fluvial regimes used by spawning salmonids. Canadian Journal of Fisheries and Aquatic Sciences. 66:1404-1408.
Andrews M, Lea PJ, Raven JA, Azevedo RA.  2009.  Nitrogen use efficiency. 3. Nitrogen fixation: genes and costs. Annals of Applied Biology. 155:1-13.
Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al..  2009.  Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
Hein I, Birch PRJ, Danan S, Lefebvre V, Odeny DA, Gebhardt C, Trognitz F, Bryan GJ.  2009.  Progress in mapping and cloning qualitative and quantitative resistance against Phytophthora infestans in potato and its wild relatives. Potato Research. 52:215-227.
Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C.  2009.  Reconstruction of monocotyledonous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences, USA. 106:14908-14913.
Spezia L.  2009.  Reversible jump and the label switching problem in hidden Markov models. Journal of Statistical Planning and Inference. 139:2305-2315.
Lawson DJ, Jensen HJ.  2009.  The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology. 257:696-703.
Crampton BG, Hein I, Berger DK.  2009.  Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
Andrews M, Maule HG, Hodge S, Cherrill A, Raven JA.  2009.  Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.
Lehrach WP, Husmeier D.  2009.  Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
Visser RGF, Bachem CWB, de Boer JM, Bryan GJ, Chakrabati SK, Feingold S, Gromadka R, van Ham RCHJ, Huang SW, Jacobs JME et al..  2009.  Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.
Polechov J, Barton N, Marion G.  2009.  Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
Ki LP, Felber F, Flavell AJ, Guadagnuolo R, Guiatti D, Hauser TP, Olivieri AM, Scotti I, Syed NH, Vischi M et al..  2009.  Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
Pearce MC, Chase-Topping ME, McKendrick IJ, Mellor DJ, Locking ME, Allison L, Ternent HE, Matthews L, Knight HI, Smith AW et al..  2009.  Temporal and spatial patterns of bovine Escherichia coli O157 prevalence and comparison of temporal changes in the patterns of phage types associated with bovine shedding and human E. coli O157 cases in Scotland between 1998-2000 and 2002-2004. BMC Microbiology. 9:-276.
Wright HW, Bartley K, Nisbet AJ, McDevitt RM, Sparks NHC, Brocklehurst S, Huntley JF.  2009.  The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.
Hurd CL, Hepburn CD, Currie KI, Raven JA, Hunter KA.  2009.  Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.
Jones HG, Serraj R, Loveys BR, Xiong LH, Wheaton A, Price AH.  2009.  Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
Goodall N, Kisiswa L, Prashar A, Faulkner S, Tokarczuk P, Singh K, Erichsen JT, Guggenheim J, Halfter W, Wride MA.  2009.  Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F.  2009.  TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics. 25:126-127.
Potokina E, Druka A, Kearsey MJ.  2009.  Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
Bahar B, Moloney AP, Monahan FJ, Harrison SM, Zazzo A, Scrimgeour CM, Begley IS, Schmidt O.  2009.  Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
Glasbey CA.  2009.  Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
Torrance L, Lukhovitskaya NI, Schepetilnikov MV, Cowan GH, Ziegler A, Savenkov EI.  2009.  Unusual long-distance movement strategies of Potato mop-top virus RNAs in Nicotiana benthamiana. Molecular Plant-Microbe Interactions. 22:381-390.
Davidson RS, Marion G, White PCL, Hutchings MR.  2009.  Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan GW, Johnson IT, Mariman EC, Elliott RM et al..  2009.  Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes and Nutrition. 4:95-102.
2010
Christensen NM, Oparka KJ, Tilsner J.  2010.  Advances in imaging RNA in plants. Trends in Plant Science. 15:196-203.
Sprent JI, Odee DW, Dakora FD.  2010.  African legumes: A vital but under-utilised resource. Journal of Experimental Botany. 61:1257-1265.
Schornack S, Van Damme M, Bozkurt TO, Cano LM, Smoker M, Thines M, Gaulin E, Kamoun S, Huitema E.  2010.  Ancient class of translocated oomycete effectors targets the host nucleus. Proceedings of the National Academy of Sciences, USA. 107:17421-17426.
Reyers B, Pettorelli N, Katzner T, Gompper ME, Redpath S, Garner TWJ, Altwegg R, Reed DH, Gordon IJ.  2010.  Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13:523-525.
Navajas EA, Glasbey CA, Fisher AV, Ross DW, Hyslop JJ, Richardson RI, Simm G, Roehe R.  2010.  Assessing beef carcass tissue weights using computed tomography spirals of primal cuts. Meat Science. 84:30-38.
Watkins C, Schock A, May L, Denham S, Sales J, Welch L, Sharp JM, Stevenson K.  2010.  Assessing virulence of vaccine strains of Mycobacterium avium subspecies paratuberculosis in a calf model. Veterinary Microbiology. 146:63-69.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.