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2007
Ravensdale M, Blom TJ, Gracia-Garza JA, Svircev AM, Smith RJ.  2007.  Bacteriophages and the control of Erwinia carotovora subsp. carotovora. Canadian Journal of Plant Pathology. 29:121-130.
Forster BP, Franckowiak JD, Lundqvist U, Lyon J, Pitkethly I, Thomas WTB.  2007.  The barley phytomer. Annals of Botany. 100:725-733. Abstract
Hukkanen AT, Kokko HI, Buchala AJ, McDougall GJ, Stewart D, K SO, Karjalainen RO.  2007.  Benzothiadiazole induces the accumulation of phenolics and improves resistance to powdery mildew in strawberries. Journal of Agricultural and Food Chemistry. 55:1862-1870. Abstract
Sayanova O, Haslam R, Guschina I, Lloyd D, Christie WW, Harwood JL, Napier JA.  2007.  A bifunctional D12, D15-desaturase from Acanthamoeba castellanii directs the synthesis of highly unusual n-1 series unsaturated fatty acids. Journal of Biological Chemistry. 281:36533-36541. Abstract
Kuan HL, Hallett PD, Griffiths BS, Gregory AS, Watts CW, Whitmore AP.  2007.  The biological and physical stability and resilience of a selection of Scottish soils to stresses. European Journal of Soil Science. 58:811-821. Abstract
Williamson B, Tudzynski B, Tudzynski P, Van Kan JAL.  2007.  Botrytis cinerea: the cause of grey mould disease. Molecular Plant Pathology. 8:561-580. Abstract
Roberts K, Granum E, Leegood RC, Raven JA.  2007.  C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control. Plant Physiology. 145:230-235. Abstract
Kim S-H, Ryabov EV, Kalinina N, Rakitina DV, Gillespie T, MacFarlane SA, Haupt S, Brown JWS, Taliansky ME.  2007.  Cajal bodies and the nucleolus are required for a plant virus systemic infection. EMBO Journal. 26:2169-2179. Abstract
Roberts AMI, Theobold CM, McNeil M.  2007.  Calibration of quantitative PCR assays. Journal of Agricultural Biological and Environmental Statistics. 12:364-378. Abstract
Roberts K, Granum E, Leegood RC, Raven JA.  2007.  Carbon acquisition by diatoms. Photosynthesis Research. 93:79-88. Abstract
Reavy B, Bagirova S, Chichkova NV, Fedoseeva SV, Kim S-H, Vartapetian AB, Taliansky ME.  2007.  Caspase-resistant VirD2 protein provides enhanced gene delivery and expression in plants. Plant Cell Reports. 26:1215-1219. Abstract
Artz RRE, Anderson IC, Chapman SJ, Hagn A, Schloter M, Potts JM, Campbell CD.  2007.  Changes in fungal community composition in response to vegetational succession during the natural regeneration of cutover peatlands. Microbial Ecology. 54:508-522. Abstract
Woodhall JW, Lees AK, Edwards SG, Jenkinson P.  2007.  Characterisation of Rhizoctonia solani from potato in Great Britain. Plant Pathology. 56:286-295. Abstract
Le Gall O, Sanfacon H, Ikegami M, Iwanami T, Jones AT, Karasev A, Lehto K, Wellink J, Wetzel T, Yoshikawa N.  2007.  Cheravirus and Sadwavirus: two unassigned genera of plant positive-sense single-stranded RNA viruses formerly considered atypical members of the genus Nepovirus (family Comoviridae). Archives of Virology. 152:1767-1774.
Mazzitelli L, Hancock RD, Haupt S, Walker PG, Pont SDA, McNicol JW, Cardle L, Morris J, Viola R, Brennan RM et al..  2007.  Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds.. Journal of Experimental Botany. 58:1035-1045. Abstract
Coates EM, Popa G, Gill CIR, McCann M, McDougall GJ, Stewart D, Rowland I.  2007.  Colon-available raspberry extract exhibit anti-cancer effects on in vitro models of colon cancer. Proceedings of the Nutrition Society. 66:67A-67A.
Coates EM, Popa G, Gill CIR, McCann MJ, McDougall GJ, Stewart D, Rowland I.  2007.  Colon-available raspberry polyphenols exhibit anti-cancer effects on in vitro models of colon cancer. Journal of Carcinogenesis. 6:1-13. Abstract
Glasbey CA, van der Heijden GWAM, Toh VFK, Gray A.  2007.  Colour displays for categorical images. Color Research and Application. 32:304-309. Abstract
Khondoker MR, Glasbey CA, Worton BJ.  2007.  A comparison of parametric and non-parametric methods for normalising cDNA microarray data. Biometrical Journal. 49:815-823. Abstract
Jones MR, Leith ID, Fowler D, Raven JA, Sutton MA, Nemitz E, Cape JN, Sheppard LJ, Smith RI, Theobold MR.  2007.  Concentration-dependent NH3 deposition processes for mixed moorland semi-natural vegetation. Atmospheric Environment. 41:2049-2060. Abstract
Jones MR, Leith ID, Fowler D, Raven JA, Sutton MA, Nemitz E, Cape JN, Sheppard LJ, Smith RI.  2007.  Concentration-dependent NH3 deposition processes for stomatal and non-stomatal moorland species. Atmospheric Environment. 41:8990-8994. Abstract
Sommerhalder RJ, McDonald BA, Zhan J.  2007.  Concordant evolution of mitochondrial and nuclear genomes in the wheat pathogen Phaeosphaeria nodurum. Fungal Genetics and Biology. 44:764-772. Abstract
Vanbergen AJ, Jones TH, Halls RS, Watt AD, Elston DA.  2007.  Consequences for a host-parasitoid interaction of host-plant aggregation, isolation and phenology. Ecological Entomology. 32:419-427. Abstract
Bown JL, Pachepsky E, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 1: Model development and predicted patterns of diversity. Ecological Modelling. 207:264-276. Abstract
Pachepsky E, Bown JL, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 2: Linking diversity and function. Ecological Modelling. 207:277-285. Abstract
Sakvarelidze L, Tao Z, Bush M, Roberts GR, Leader DJ, Doonan JH, Rawsthorne S.  2007.  Coupling the GAL4 UAS system with alcR for versatile cell type-specific chemically inducible gene expression in Arabidopsis. Plant Biotechnology Journal. 5:465-476. Abstract
Beerling DJ, Hewitt CN, Pyle JA, Raven JA.  2007.  Critical issues in trace gas biogeochemistry and global change. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1629-1642. Abstract
Valentine TA, Randall E, Wypijewski K, Chapman S, Jones JT, Oparka KJ.  2007.  Delivery of macromolecules to plant parasitic nematodes using a tobacco rattle virus vector. Plant Biotechnology Journal. 5:827-834. Abstract
van Nugteren I, Hein I, Berger DK.  2007.  Development of a virus-induced gene silencing system in pearl millet. South African Journal of Botany. 73:339-339. Abstract
Woodhead M, Russell JR, Squirrell J, Hollingsworth PM, Cardle L, Gibby M, Powell W.  2007.  Development of EST-derived microsatellite markers for Arabidopsis lyrata subspecies petraea (L.). Molecular Ecology Notes. 7:631-634. Abstract
George TS, Simpson RJ, Gregory PJ, Richardson AE.  2007.  Differential interaction of Aspergillus niger and Peniophora lycii phytases with soil particles affects the hydrolysis of inositol phosphates. Soil Biology & Biochemistry. 39:793-803. Abstract
Tzortzakakis EA, Blok VC.  2007.  Differentiation in two populations of Meloidogyne incognita from Greece in relation to reproduction on resistant tomato and pepper. Journal of Plant Diseases and Protection. 114:276-277. Abstract
Mao X, Hu F, Griffiths BS, Chen XY, Liu M, Li H.  2007.  Do bacterial-feeding nematodes stimulate root proliferation through hormonal effects? Soil Biology & Biochemistry. 39:1816-1819. Abstract
Szarejko I, Forster BP.  2007.  Doubled haploidy and induced mutation. Euphytica. 158:359-370. Abstract
El Zemrany H, Czarnes S, Hallett PD, Alamercery S, Bally R, Monrozier LJ.  2007.  Early changes in root characteristics of maize (Zea mays) following seed inoculation with the PGPR Azospirillum lipoferum CRT1. Plant and Soil. 291:109-118. Abstract
Krogh PH, Griffiths BS.  2007.  ECOGEN - Soil ecological and economic evaluation of genetically modified crops. Pedobiologia. 51:171-173. Abstract
Chope GA, Terry LA, White PJ.  2007.  The effect of 1-methylcyclopropene (1-MCP) on the physical and biochemical characteristics of onion cv. SS1 bulbs during storage. Postharvest Biology and Technology. 44:131-140. Abstract
Andersen HS, Gambling L, Holtrop G, McArdle HJ.  2007.  Effect of dietary copper deficiency on iron metabolism in the pregnant rat. British Journal of Nutrition. 97:239-246. Abstract
Lehesranta SJ, Koistinen KM, Massat N, Davies HV, Shepherd LVT, McNicol JW, Cakmak I, Cooper J, Luck L, K SO et al..  2007.  Effects of agricultural production systems and their components on protein profiles of potato tubers. Proteomics. 7:597-604. Abstract
Griffiths DW, Dale MFB, Morris WL, Ramsay G.  2007.  Effects of season and postharvest storage on the carotenoid content of Solanum phureja potato tubers. Journal of Agricultural and Food Chemistry. 55:379-385. Abstract
Ravirala RS, Barabote RD, Wheeler DM, Reverchon S, Tatum O, Malouf J, Liu H, Pritchard L, Hedley PE, Birch PRJ et al..  2007.  Efflux pump gene expression in Erwinia chrysanthemi is induced by exposure to phenolic acids. Molecular Plant-Microbe Interactions. 20:313-320. Abstract
Johnson SN, Zhang X, Crawford JW, Gregory PJ, Young IM.  2007.  Egg hatching and survival time of soil-dwelling insect larvae: a partial differential equation model and experimental validation. Ecological Modelling. 202:493-502. Abstract
Shams-Bakhsh M, Canto T, Palukaitis P.  2007.  Enhanced resistance and neutralization of defense responses by suppressors of RNA silencing. Virus Research. 130:103-109. Abstract
Dziva F, Mahajan A, Cameron P, Currie C, McKendrick IJ, Wallis TS, Smith DGE, Stevens MP.  2007.  EspP, a type V-secreted serine protease of enterohaemorrhagic Escherichia coli O157:H7, influences intestinal colonization of calves and adherence to bovine primary intestinal epithelial cells. FEMS Microbiology Letters. 271:258-264. Abstract
Cook AR, Otten W, Marion G, Gibson GJ, Gilligan CA.  2007.  Estimation of multiple transmission rates for epidemics in heterogeneous populations. Proceedings of the National Academy of Sciences, USA. 104:20392-20397. Abstract
Cortet J, Griffiths BS, Bohanec M, Demsar D, Andersen MN, Caul S, Birch ANE, Pernin C, Tabone E, de Vaufleury A et al..  2007.  Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
Watanabe T, Broadley MR, Jansen S, White PJ, Takada J, Satake K, Takamatsu T, Tuah SJ, Osaki M.  2007.  Evolutionary control of leaf element composition in plants. New Phytologist. 174:516-523. Abstract
Zazzo A, Harrison SM, Bahar B, Moloney AP, Monahan FJ, Scrimgeour CM, Schmidt O.  2007.  Experimental determination of dietary carbon turnover in bovine hair and hoof. Canadian Journal of Zoology. 85:1239-1248. Abstract
Usher KM, Bergman B, Raven JA.  2007.  Exploring cyanobacterial mutualisms. Annual Review of Ecology Evolution and Systematics. 38:255-273. Abstract
Grant OM, Tronina L, Jones HG, Chaves MM.  2007.  Exploring thermal imaging variables for the detection of stress responses in grapevine under different irrigation regimes. Journal of Experimental Botany. 58:815-825. Abstract
de Vaufleury A, Kramarz P, Binet P, Cortet J, Caul S, Andersen MN, Plumey E, Coeurdassier M, Krogh PH.  2007.  Exposure and effects assessments of Bt maize on non-target organisms (gastropod, microarthropods, mycorrhizal fungi) in a semi-field microcosm experiment. Pedobiologia. 51:185-194. Abstract
Kikuchi T, Aikawa T, Kosaka H, Pritchard L, Ogura N, Jones JT.  2007.  Expressed sequence tag (EST) analysis of the pine wood nematode Bursaphelenchus xylophilus and B. mucronatus. Molecular and Biochemical Parasitology. 155:9-17. Abstract
White PJ, Bowen HC, Marshall B, Broadley MR.  2007.  Extraordinarily high leaf selenium to sulfur ratios define "Se-accumulator" plants. Annals of Botany. 100:111-118. Abstract
Butler A, Heffernan JE, Tawn JA, Flather RA, Horsburgh KJ.  2007.  Extreme value analysis of decadal variations in storm surge elevations. Journal of Marine Systems. 67:189-200. Abstract
Lichner L, Hallett PD, Feeney D, Dugova O, Sir M, Tesar M.  2007.  Field measurement of soil water repellency and its impact on water flow under different vegetation. Biologia. 62:537-541. Abstract
Farmer NL, Ruffell A, Meier-Augenstein W, Meneely J, Kalin RM.  2007.  Forensic analysis of wooden safety matches - a case study. Science and Justice. 47:88-98. Abstract
Forster BP, Tuvesson S, Weyen J.  2007.  Foreword: Gametic cells and molecular breeding for crop improvement. Euphytica. 158:273-274. Abstract
Jing R, Johnson R, Seres A, Kiss G, Ambrose MJ, Knox MR, Ellis THN, Flavell AJ.  2007.  Gene-based sequence diversity analysis of field pea (Pisum). Genetics. 177:2263-2275. Abstract
Zhang X, Johnson SN, Crawford JW, Gregory PJ, Young IM.  2007.  A general random walk model for the leptokurtic distribution of organism movement: theory and application. Ecological Modelling. 200:79-88. Abstract
Hein I, McLean K, Chalhoub B, Bryan GJ.  2007.  Generation and screening of a BAC library from a diploid potato clone to unravel durable late blight resistance on linkage group IV. International Journal of Plant Genomics. :-51421. Abstract
Sanz AM, Gonzalez SG, Syed NH, Suso MJ, Salda CC, Flavell AJ.  2007.  Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers. Molecular Genetics and Genomics. 278:433-441. Abstract
Chesnay C, Kumar A, Pearce SR.  2007.  Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract
M C, Crosley LK, Nicol F, Beckett GJ, Howie AF, Hill KE, Horgan GW, Mathers JC, Arthur JR, Hesketh JE.  2007.  Genetic polymorphisms in the human selenoprotein P gene determine the response of selenoprotein markers to selenium supplementation in a gender-specific manner (the SELGEN study). FASEB Journal. 21:3063-3074. Abstract
Hopkins DW, Webster EA, Boerjan W, Pilate G, Halpin C.  2007.  Genetically modified lignin belowground. Nature Biotechnology. 25:168-169. Abstract
Ramsey JS, Wilson ACC, de Vos M, Sun Q, Tamborindeguy C, Winfield A, Malloch G, Smith DM, Fenton B, Gray SM et al..  2007.  Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design. BMC Genomics. 8:-423. Abstract
Varshney RK, Marcel TC, Ramsay L, Russell JR, R MS, Stein N, Waugh R, Langridge P, Niks RE, Graner A.  2007.  A high density barley microsatellite consensus map with 775 SSR loci. Theoretical and Applied Genetics. 114:1091-1103. Abstract
Sims M, Elston DA, Larkham A, Nussey DH, Albon SD.  2007.  Identifying when weather influences life-history traits of grazing herbivores. Journal of Animal Ecology. 76:761-770. Abstract
Eaton SL, Rocchi M, Gonz L, Hamilton S, Finlayson J, Sales J, Jeffrey M, Steele PJ, Dagliesh MP, Rodger SM et al..  2007.  Immunological differences between susceptible and resistant sheep during the preclinical phase of scrapie infection. Journal of General Virology. 88:1384-1391. Abstract
Lobley GE, Bremner DM, Holtrop G, Johnstone AM, Maloney C.  2007.  Impact of high protein diets with either moderate or low carbohydrate on weight loss, body composition, blood pressure and glucose tolerance in rats. British Journal of Nutrition. 97:1099-1108. Abstract
Belenguer A, Duncan SH, Holtrop G, Anderson SE, Lobley GE, Flint HJ.  2007.  Impact of pH on lactate formation and utilization by human fecal microbial communities. Applied and Environmental Microbiology. 73:6526-6533. Abstract
Naylor SW, Nart P, Sales J, Flockhart A, Gally DL, Low JC.  2007.  Impact of the direct application of therapeutic agents to the terminal recta of experimentally colonized calves on Escherichia coli O157: H7 shedding. Applied and Environmental Microbiology. 73:1493-1500. Abstract
Sims M, Elston DA, Harris MP, Wanless S.  2007.  Incorporating variance uncertainty into a power analysis of monitoring designs. Journal of Agricultural Biological and Environmental Statistics. 12:236-249. Abstract
Singh BK, Munro S, Potts JM, Millard P.  2007.  Influence of grass species and soil type on rhizosphere microbial community structure in grassland soils. Applied Soil Ecology. 36:147-155. Abstract
Sales J, Vali L, Hoyle DV, Yates CM, Amyes SGB, McKendrick IJ.  2007.  The interaction between dam methylation sites and Xha1 restriction digest sites in Escherichia coli O157: H7 EDL933. Journal of Applied Microbiology. 102:820-825. Abstract
Kim S-H, MacFarlane SA, Kalinina NO, Rakitina DV, Ryabov E, Gillespie T, Haupt S, Brown JWS, Taliansky ME.  2007.  Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection. Proceedings of the National Academy of Sciences, USA. 104:11115-11120.
Rommens CM, Haring MA, Swords K, Davies HV, Belknap WR.  2007.  The intragenic approach as a new extension to traditional plant breeding. Trends in Plant Science. 12:397-403. Abstract
Gilroy EM, Hein I, van der Hoorn R, Boevink P, Venter E, McLellan H, Kaffarnik F, Hrubikova K, Shaw J, Holeva MC et al..  2007.  Involvement of cathepsin B in the plant disease resistance hypersensitive response. Plant Journal. 52:1-13. Abstract
Andrews M, Raven JA, Sprent JI, Lea PJ.  2007.  Is shoot growth correlated to leaf protein concentration? Trends in Plant Science. 12:531-532. Abstract
Hancock RD, Walker PG, Pont SDA, Marquis N, Vivera S, Gordon SL, Brennan RM, Viola R.  2007.  L-Ascorbic acid accumulation in fruit of Ribes nigrum occurs by in situ biosynthesis via the L-galactose pathway. Functional Plant Biology. 34:1080-1091. Abstract
Allcroft DJ, Glasbey CA, Paulo MJ.  2007.  A latent Gaussian model for multivariate consumption data. Food Quality and Preference. 18:508-516. Abstract
Latijnhouwers M, Gillespie T, Boevink P, Hawes C, Carvalho C.  2007.  Localisation and domain characterisation of Arabidopsis Golgin Candidates. Journal of Experimental Botany. 58:4373-4386. Abstract
Mickovski SB, Bengough AG, Bransby MF, Davies MCR, Hallett PD, Sonnenberg R.  2007.  Material stiffness, branching pattern, and soil water matric potential affect the pullout resistance of model root systems. European Journal of Soil Science. 58:1471-1481. Abstract
Feuillet C, Langridge P, Waugh R.  2007.  Meeting Report: The Aaronsohn-ITMI International Conference. Israel Journal of Plant Sciences. 55:315-319.
Stewart D, McDougall GJ, Sungurtas J, Verrall SR, Graham J, Martinussen I.  2007.  Metabolomic approach to identifying bioactive compounds in berries: Advances toward fruit nutritional enhancement. Molecular Nutrition and Food Research. 51:645-651. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Cortet J, Andersen MN, Krogh PH.  2007.  Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
Gibson T, Blok VC, Phillips MS, Hong G, Kumarasinghe D, Riley IT, Dowton M.  2007.  The mitochondrial subgenomes of the nematode Globodera pallida are mosaics: Evidence of recombination in an animal mitochondrial genome. Journal of Molecular Evolution. 64:463-471. Abstract
Rae SJ, Macaulay M, Ramsay L, Leigh F, Matthews D, O'Sullivan DM, Donini P, Morris PC, Powell W, Marshall DF et al..  2007.  Molecular barley breeding. Euphytica. 158:295-303. Abstract
Morris WL, Ducreux LJM, Bryan GJ, Taylor MA.  2007.  Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297. Abstract
Riga E, Karanastasi E, Oliveira CMG, Neilson R.  2007.  Molecular identification of two stubby root nematode species. American Journal of Potato Research. 84:161-167. Abstract
Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al..  2007.  Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.
Chaerle L, Leinonen I, Jones HG, van der Straeten D.  2007.  Monitoring and screening plant populations with combined thermal and chlorophyll fluorescence imaging. Journal of Experimental Botany. 58:773-784. Abstract
Caumette G, Ouypornkochagorn S, Scrimgeour CM, Raab A, Feldmann J.  2007.  Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract
Matheson LA, Loren A, Hanton SL, Rossi M, Latijnhouwers M, Stefano G, Renna L, Brandizzi F.  2007.  Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the golgi matrix. Plant Physiology. 143:1615-1627.
Wilson MR, Foucaud L, Barlwo PG, Hutchison GR, Sales J, Simpson RJ, Stone V.  2007.  Nanoparticle interactions with zinc and iron: Implications for toxicology and inflammation. Toxicology and Applied Pharmacology. 225:80-89. Abstract
Dietrich C, Miller J, McKenzie G, Palkovics L, Bal E, Palukaitis P, Maiss E.  2007.  No recombination detected between potyvirus mixed infections and between potyvirus derived transgenes and heterologous challenging potyviruses. Environmental Biosafety Research. 6:207-218. Abstract
Johnson SN, Crawford JW, Gregory PJ, Grinev DV, Mankin RW, Masters GJ, Murray PJ, Wall DH, Zhang X.  2007.  Non-invasive techniques for investigating and modelling root-feeding insects in managed and natural systems. Agricultural and Forest Entomology. 9:39-46.
Krishnarajah I, Marion G, Gibson G.  2007.  Novel bivariate moment-closure approximations. Mathematical Biosciences. 208:621-643. Abstract
Li X, Halpin C, Ryan MD.  2007.  A novel cleavage site within the potato leafroll virus P1 polyprotein. Journal of General Virology. 88:1620-1623. Abstract
Avrova AO, Whisson SC, Pritchard L, Venter E, de Luca S, Hein I, Birch PRJ.  2007.  A novel, non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans. Microbiology. 153:747-759. Abstract
Graham NS, Broadley MR, Hammond JP, White PJ, May ST.  2007.  Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics. 8:-344. Abstract
Cockell CS, Raven JA.  2007.  Ozone and life on the Archaean earth. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1889-1901. Abstract
Stamati K, Hollingsworth PM, Russell JR.  2007.  Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
Judge J, Davidson RS, Marion G, White PCL, Hutchings MR.  2007.  Persistence of Mycobacterium avium subspecies paratuberculosis in rabbits: the interplay between horizontal and vertical transmission. Journal of Applied Ecology. 44:302-311. Abstract
Gregory AS, Watts CW, Whalley WR, Kuan HL, Griffiths BS, Hallett PD, Whitmore AP.  2007.  Physical resilience of soil to field compaction and the interactions with plant growth and microbial community structure. European Journal of Soil Science. 58:1221-1232. Abstract
Giordano M, Norici A, Gilmour DJ, Raven JA.  2007.  Physiological responses of the green alga Dunaliella parva (Volvocales, Chlorophyta) to controlled incremental changes in the N source. Functional Plant Biology. 34:925-934. Abstract
Kaplan IB, Lee L, Ripoll DR, Palukaitis P, Gildow FE, Gray SM.  2007.  Point mutations in the potato leafroll virus major capsid protein alter virion stability and aphid transmission. Journal of General Virology. 88:1821-1830. Abstract
Carfrae JA, Sheppard LJ, Raven JA, Leith ID, Crossley A.  2007.  Potassium and phosphorus additions modify the response of Sphagnum capillifolium growing on a Scottish ombrotrophic bog to enhanced nitrogen deposition. Applied Geochemistry. 22:1111-1121. Abstract
McCue KF, Allen PV, Shepherd LVT, Blake A, Maccree MM, Rockhold DR, Novy RG, Stewart D, Davies HV, Belknap WR.  2007.  Potato glycosterol rhamnosyltransferase, the terminal step in triose side-chain biosynthesis. Phytochemistry. 68:327-334. Abstract
Shepherd T, Dobson G, Verrall SR, Conner S, Griffiths DW, McNicol JW, Davies HV, Stewart D.  2007.  Potato metabolomics by GC-MS: what are the limiting factors? Metabolomics. 3:475-488. Abstract
Christie WW, Dobson G, Adlof RO.  2007.  A practical guide to the isolation, analysis and identification of conjugated linoleic acid. Lipids. 42:1073-1084. Abstract
Laurenson K, McKendrick IJ, Reid HW, Challenor R, Mathewson GK.  2007.  Prevalence, spatial distribution and the effect of control measures on louping-ill virus in the Forest of Bowland, Lancashire. Epidemiology and Infection. 135:963-973. Abstract
Szili-Kovacs T, Torok K, Tilston EL, Hopkins DW.  2007.  Promoting microbial immobilization of soil nitrogen during restoration of abandoned agricultural fields by organic additions. Biology and Fertility of Soils. 43:823-828.
Molina-Cano J-L, Moralejo MA, Elia M, Mu P, Russell JR, P AM, Ciudad F, Swanston JS.  2007.  QTL analysis of a cross between European and North American malting barleys reveals a putative candidate gene for . Molecular Breeding. 19:275-284. Abstract
Bohanec M, Cortet J, Griffiths BS, Znidarsic M, Debeljak M, Caul S, Thompson J, Krogh PH.  2007.  A qualitative multi-attribute model for assessing the impact of cropping systems on soil quality. Pedobiologia. 51:239-250. Abstract
Moran D, McVittie A, Allcroft DJ, Elston DA.  2007.  Quantifying public preferences for agri-environmental policy in Scotland: a comparison on methods. Ecological Economics. 63:42-53. Abstract
Albon SD, Brewer MJ, O'Brien S, Nolan AJ, Cope D.  2007.  Quantifying the grazing impacts associated with different herbivores on rangelands. Journal of Applied Ecology. 44:1176-1187. Abstract
Gooding MJ, Gregory PJ, Ford KE, Ruske RE.  2007.  Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
Scott D, Welch D, van der Wal R, Elston DA.  2007.  Response of the moss Racomitrium lanuginosum to changes in sheep grazing and snow-lie due to a snow-fence. Applied Vegetation Science. 10:229-238. Abstract
Hermans C, Hammond JP, Verbruggen N, White PJ.  2007.  Response to Andrews et al.: Correlations and causality. Trends in Plant Science. 12:532-533. Abstract
Krogh PH, Griffiths BS, Demsar D, Bohanec M, Debeljak M, Andersen MN, Sausse C, Birch ANE, Caul S, Holmstrup M et al..  2007.  Responses by earthworms to reduced tillage in herbicide tolerant maize and Bt maize cropping systems. Pedobiologia. 51:219-227. Abstract
Forster BP, Herberle-Bors E, Kasha KJ, Touraev A.  2007.  The resurgence of haploids in higher plants. Trends in Plant Science. 12:368-375. Abstract
Jones JT, Furlanetto C, Phillips M.  2007.  The role of flavonoids produced in response to cyst nematode infection of Arabidopsis thaliana. Nematology. 9:671-677. Abstract
de Dorlodot S, Forster BP, Pag L, Price AH, Tuberosa R, Draye X.  2007.  Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science. 12:474-481. Abstract
Poulsen M, Schroder M, Wilcks A, Kroghsbo S, Lindecrona RH, Miller A, Frenzel T, Danier J, Rychlik M, Shu QY et al..  2007.  Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
Horgan GW.  2007.  Sample size and replication in 2D gel electrophoresis studies. Journal of Proteome Research. 6:2884-2887. Abstract
Mitchell A, Oommen M, Bhatia P, Scott P, Robertson ZC, Stewart D, McDougall GJ, Wallace HM.  2007.  Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract
Armstrong MR, Husmeier D, Phillips MS, Blok VC.  2007.  Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida. Journal of Molecular Evolution. 64:689-701. Abstract
Leitch ECM, Walker AW, Duncan SH, Holtrop G, Flint HJ.  2007.  Selective colonization of insoluble substrates by human faecal bacteria. Environmental Microbiology. 9:667-679. Abstract
Lewsey M, Robertson FC, Canto T, Palukaitis P, Carr JP.  2007.  Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein. Plant Journal. 50:240-252. Abstract
Luo ZW, Potokina E, Druka A, Wise R, Waugh R, Kearsey MJ.  2007.  SFP genotyping from Affymetrix arrays is robust but largely detects cis-acting expression regulators. Genetics. 176:789-800. Abstract
Zhan J, Torriani SFF, McDonald BA.  2007.  Significant difference in pathogencity between MAT1-1 and MAT1-2 isolates in the wheat pathogen Mycosphaerella graminicola.. Fungal Genetics and Biology. 44:339-346. Abstract
Wood JC, McKendrick IJ, Gettingby G.  2007.  A simulation model to assess herd-level intervention strategies against E. coli O157. Epidemiology and Infection. 135:749-764. Abstract
Velikova V, Edreva AM, Tsonev T, Jones HG.  2007.  Singlet oxygen quenching by phenylamides and their parent compounds. Zeischrift f. 62c:833-838.
Begg GS, Cullen DW, Iannetta PPM, Squire GR.  2007.  Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots. Transgenic Research. 16:51-63. Abstract
Moora M, Daniell TJ, Kalle H, Liira J, P K, Roosaluste E, Opik M, Wheatley RE, Zobel M.  2007.  Spatial pattern and species richness of boreonemoral forest understorey and its determinants - A comparison of differently managed forests. Forest Ecology & Management. 250:64-70. Abstract
Chung BN, Canto T, Palukaitis P.  2007.  Stability of recombinant plant viruses containing genes of unrelated plant viruses. Journal of General Virology. 88:1347-1355. Abstract
Cerm J, Gasp J, De Lorenzi F, Jones HG.  2007.  Stand biometry and leaf area distribution in an old olive grove at Andria, southern Italy. Annals of Forest Science. 64:491-501. Abstract
Bohan DA, Hawes C, Haughton AJ, Denholm I, Champion GT, Perry JN, Clark SJ.  2007.  Statistical models to evaluate invertebrate-plant trophic interactions in arable systems. Bulletin of Entomological Research. 97:265-280. Abstract
Krivtsov V, Garside A, Brendler A, Liddell K, Griffiths BS, Staines HJ.  2007.  A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology. 57:467-484. Abstract
Viola R, Pelloux J, van der Ploeg A, Gillespie T, Marquis N, Roberts AG, Hancock RD.  2007.  Symplastic connection is required for bud outgrowth following dormancy in potato (Solanum tuberosum L.) tubers. Plant, Cell and Environment. 30:973-983. Abstract
Broadley MR, White PJ, Hammond JP, Zelko I, Lux A.  2007.  Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ.  2007.  Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Traffic. 8:21-31. Abstract
Wright KM, Wood NT, Roberts AG, Chapman S, Boevink P, MacKenzie K, Oparka KJ.  2007.  Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Addendum. Plant Signaling & Behaviour. 2:180-181. Abstract
Hackett CA, Milne I, Bradshaw JE, Luo ZW.  2007.  TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract
Stoll M, Jones HG.  2007.  Thermal imaging as a viable tool for monitoring plant stress. Journal International des Sciences de la Vigne et du Vin. 41:77-84.
Harrison SM, Monahan FJ, Zazzo A, Bahar B, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Three-dimensional growth of bovine hoof as recorded by carbon stable isotope ratios. Rapid Communications in Mass Spectrometry. 21:3971-3976. Abstract
van den Berg N, Berger DK, Hein I, Birch PRJ, Wingfield MJ, Viljoen A.  2007.  Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology. 8:333-341. Abstract
Cooke DEL, Schena L, Cacciola SO.  2007.  Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract
Cooke DEL.  2007.  Tracking the sudden oak death pathogen. Molecular Ecology. 16:3735-3736.
Whisson SC, Boevink P, Moleleki LN, Avrova AO, Morales JG, Gilroy EM, Armstrong MR, Grouffaud S, van West P, Chapman S et al..  2007.  A translocation signal for delivery of oomycete effector proteins into host plant cells. Nature. 450:115-118. Abstract
Raven JA, Crane P.  2007.  Trees. Current Biology. 17:R303-R304. Abstract
Morris WL, Ross HA, Ducreux LJM, Bradshaw JE, Bryan GJ, Taylor MA.  2007.  Umami compunds are a determinant of the flavor of potato (Solanum tuberosum L.).. Journal of Agricultural and Food Chemistry. 55:9627-9633. Abstract
Sabot F, Hua-Van A, Bennetzen JL, Capy P, Chalhoub B, Flavell AJ, Leroy P, Morgante M, Panaud O, Paux E et al..  2007.  A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics. 8:973-982. Abstract
Harrison SM, Zazzo A, Bahar B, Monahan FJ, Moloney AP, Scrimgeour CM, Schmidt O.  2007.  Using hooves for high-resolution isotopic reconstruction of bovine dietary history. Rapid Communications in Mass Spectrometry. 21:479-486. Abstract
Iannetta PPM, Begg GS, Hawes C, Young MW, Russell JR, Squire GR.  2007.  Variation in Capsella (shepherd's purse): an example of intraspecific functional diversity. Physiologia Plantarum. 129:542-554. Abstract
Griffiths BS, Heckmann LH, Caul S, Thompson J, Scrimgeour CM, Krogh PH.  2007.  Varietal effects of eight paired lines of transgenic Bt maize and near-isogenic non-Bt maize on soil microbial and nematode community structure. Plant Biotechnology Journal. 5:60-68. Abstract
2006
Johnson SN, Birch ANE, Gregory PJ, Murray PJ.  2006.  The 'mother knows best' principle: should soil insects be included in the preference-performance debate? Ecological Entomology. 31:395-401. Abstract
Hamilton K, Barfoot J, Crawford KE, Simpson CG, Beaumont PC, Bownes M.  2006.  Amplification of chloroplast DNA using the polymerase chain reaction (PCR): a practical activity for secondary school students. Journal of Biological Education. 40:172-177. Abstract
Meharg AA, Deacon C, Edwards KJ, Donaldson M, Davidson DA, Spring C, Scrimgeour CM, Feldmann J, Rabb A.  2006.  Ancient manuring practices pollute arable soils at the St Kilda World Heritage Site, Scottish North Atlantic. Chemosphere. 64:1818-1828. Abstract
Jiang RHY, Tyler BM, Whisson SC, Hardham AR, Govers F.  2006.  Ancient origin of elicitin gene clusters in Phytophthora genomes. Molecular Biology and Evolution. 23:338-351. Abstract
Raven JA.  2006.  Aquatic viruses: the emerging story. Journal of the Marine Biological Association of the United Kingdom. 86:449-451. Abstract
Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A et al..  2006.  An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics. 6:202-211. Abstract
Mao X, Hu F, Griffiths BS, Li H.  2006.  Bacterial-feeding nematodes enhance root growth of tomato seedlings. Soil Biology & Biochemistry. 38:1615-1622. Abstract
Rostoks N, Schmierer D, Mudie S, Drader T, Brueggeman R, Caldwell DG, Waugh R, Kleinhofs A.  2006.  Barley necrotic locus nec1 encodes the cyclic nucleotide-gated ion channel 4 homologous to the Arabidopsis HLM1. Molecular Genetics and Genomics. 275:159-168. Abstract
Hamza O, Bengough AG, Bransby MF, Davies MCR, Hallett PD.  2006.  Biomechanics of plant roots: estimating localised deformation with particle image velocimetry. Biosystems Engineering. 94:119-132. Abstract
Bos JIB, Kanneganti T-D, Young C, Cakir C, Huitema E, Win J, Armstrong MR, Birch PRJ, Kamoun S.  2006.  The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant Journal. 48:165-176. Abstract
Gregory AS, Whalley WR, Watts CW, Bird NRA, Hallett PD, Whitmore AP.  2006.  Calculation of the compression index and precompression stress from soil compression test data. Soil and Tillage Research. 89:45-57. Abstract
Raven JA, Karley AJ.  2006.  Carbon sequestration: Photosynthesis and subsequent processes. Current Biology. 16:R165-R167. Abstract
Nuopponen M, Wikberg HI, Birch GM, J A-S, Maunu SL, Vuorinen T, Stewart D.  2006.  Characterization of 25 tropical hardwoods with Fourier transform infrared,ultraviolet resonance Raman and 13C cross-polarisation magic-angle spinning NMR spectroscopy. Journal of Applied Polymer Science. 102:810-819. Abstract
Johnson SN, Gregory PJ.  2006.  Chemically mediated host-plant location and selection by root-feeding insects. Physiological Entomology. 31:1-13. Abstract
Sunley RJ, Atkinson CJ, Jones HG.  2006.  Chill unit models and recent changes in the occurrence of winter chill and spring frost in the United Kingdom. Journal of Horticultural Science & Biotechnology. 81:949-958. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.