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Firbank LG, Rothery P, May MJ, Clark SJ, Scott RJ, R.C. S, Boffey CWH, Brooks DR, Champion GT, Haughton AJ et al..  2006.  Effects of genetically modified herbicide-tolerant cropping systems on weed seedbanks in two years of following crops. Biology Letters. 2:140-143. Abstract
Finkel ZV, Beardall J, Flynn KJ, Quigg A, Rees TAV, Raven JA.  2010.  Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
Finkel ZV, Quigg A, Raven JA, Reinfelder JR, Schofield OE, Falkowski PG.  2006.  Irradiance and the elemental stoichiometry of marine phytoplankton. Limnology and Oceanography. 51:2690-2701. Abstract
Feuillet C, Langridge P, Waugh R.  2007.  Meeting Report: The Aaronsohn-ITMI International Conference. Israel Journal of Plant Sciences. 55:315-319.
Feuillet C, Langridge P, Waugh R.  2008.  Cereal breeding takes a walk on the wild side. Trends in Genetics. 24:24-32. Abstract
Fenton B, Malloch G, Woodford JAT, Foster SP, Anstead J, Denholm I, King L, Pickup J.  2005.  The attack of the clones: tracking the movement of insecticide-resistant peach-potato aphids Myzus persicae (Hemiptera: Aphididae). Bulletin of Entomological Research. 95:483-494. Abstract
Fenton B, Margaritopoulos JT, Malloch GL, Foster SP.  2010.  Micro-evolutionary change in relation to insecticide resistance in the peach-potato aphid, Myzus persicae. Ecological Entomology. 35:131-146.
Feng X, Simpson AJ, Gregorich EG, Elberling B, Hopkins DW, Sparrow AD, Novis PM, Greenfield LG, Simpson MJ.  2010.  Chemical characterization of microbial-dominated soil organic matter in the Garwood Valley, Antarctica. Geochimica et Cosmochimica Acta. 74:6485-6498.
de Felipe P, Luke GA, Hughes LE, Gani D, Halpin C, Ryan MD.  2006.  E unum pluribus: multiple proteins from a self-processing polyprotein. Trends in Biotechnology. 24:68-75. Abstract
Feeney D, Hallett PD, Rodger S, Bengough AG, White NA, Young IM.  2006.  Impact of fungal and bacterial biocides on microbial induced water repellency in arable soil. Geoderma. 135:72-80. Abstract
Feeney D, Crawford JW, Daniell TJ, Hallett PD, Nunan N, Ritz K, Rivers M, Young IM.  2006.  Three-dimensional microorganisation of the soil-root-microbe system. Microbial Ecology. 52:151-158. Abstract
Farmer N, Meier-Augenstein W, Lucy D.  2009.  Stable isotope analysis of white paints and likelihood ratios. Science and Justice. 49:114-119. Abstract
Farmer NL, Ruffell A, Meier-Augenstein W, Meneely J, Kalin RM.  2007.  Forensic analysis of wooden safety matches - a case study. Science and Justice. 47:88-98. Abstract
Fargette M, Lollier V, Phillips M, Blok VC, Frutos R.  2005.  AFLP analysis of the genetic diversity of Meloidogyne chitwoodi and M. fallax, major agricultural pests. Comptes Rendus Biologies. 328:455-462. Abstract
Fanelli E, Di Vito M, Jones JT, De Giorgi C.  2005.  Analysis of chitin synthase function in a plant parasitic nematode, Meloidogyne artiellia, using RNAi. Gene. 349:87-95. Abstract
Faisal A, Dondelinger F, Husmeier D, Beale CM.  2010.  Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
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Ellis CJ, Crittenden PD, Scrimgeour CM, Ashcroft CJ.  2005.  Translocation of 15N indicates nitrogen recycling in the mat-forming lichen Cladonia portentosa. New Phytologist. 168:423-434. Abstract
Elia M, Swanston JS, Moralejo MA, Casas AM, P AM, Ciudad FJ, Thomas WTB, Smith PL, Ullrich SE, Molina-Cano J-L.  2010.  A model of the genetic differences in malting quality between European and North American barley cultivars based on a QTL study of the cross Triumph x Morex. Plant Breeding. 129:280-290.
Elderfield H, Riebesell U, Raven JA, Gattuso JP, Lipps J.  2010.  Closure threat to key museum research facility. Nature. 465:-1005.
El Zemrany H, Czarnes S, Hallett PD, Alamercery S, Bally R, Monrozier LJ.  2007.  Early changes in root characteristics of maize (Zea mays) following seed inoculation with the PGPR Azospirillum lipoferum CRT1. Plant and Soil. 291:109-118. Abstract
Eichmann R, Bischof M, Weis C, Shaw J, Lacomme C, Schweizer P, Duchkov D, Hensel G, Kumlehn J, H R.  2010.  BAX INHIBITOR-1 is required for full susceptibility of barley to powdery mildew. Molecular Plant-Microbe Interactions. 23:1217-1227.
Edwards D, Li CS, Raven JA.  2006.  Tracheids in an early vascular plant: a tale of two branches. Botanical Journal of the Linnean Society. 150:115-130. Abstract
Eaton SL, Rocchi M, Gonz L, Hamilton S, Finlayson J, Sales J, Jeffrey M, Steele PJ, Dagliesh MP, Rodger SM et al..  2007.  Immunological differences between susceptible and resistant sheep during the preclinical phase of scrapie infection. Journal of General Virology. 88:1384-1391. Abstract
Eaton SL, Anderson MJ, Hamilton S, Gonz L, Sales J, Jeffrey M, Reid HW, Rocchi MA, Chianini F.  2009.  CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.
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Dziva F, Mahajan A, Cameron P, Currie C, McKendrick IJ, Wallis TS, Smith DGE, Stevens MP.  2007.  EspP, a type V-secreted serine protease of enterohaemorrhagic Escherichia coli O157:H7, influences intestinal colonization of calves and adherence to bovine primary intestinal epithelial cells. FEMS Microbiology Letters. 271:258-264. Abstract
Dyckmans J, Scrimgeour CM, Schmidt O.  2005.  A simple and rapid method for labelling earthworms with 15N and 13C. Soil Biology & Biochemistry. 37:989-993. Abstract
Duthie SJ, Horgan GW, de Roos B, Rucklidge GJ, Reid M, Duncan G, Pirie L, Basten GP, Powers HJ.  2010.  Blood folate status and expression of proteins involved in immune function, inflammation and coagulation: Biochemical and proteomic changes in the plasma of humans in response to long-term synthetic folic acid supplementation. Journal of Proteome Research. 9:1941-1950.
Dupuy L, Vignes M, McKenzie BM, White PJ.  2010.  The dynamics of root meristem distribution in the soil. Plant Cell and Environment. 33:358-369.
Dupuy L, Gregory PJ, Bengough AG.  2010.  Root growth models: Towards a new generation of continuous approaches. Journal of Experimental Botany. 61:2131-2143.
Dupuy L, MacKenzie J, Haseloff J.  2010.  Coordination of plant cell division and expansion in a simple morphogenetic system. Proceedings of the National Academy of Sciences, USA. 107:2711-2716.
Duncan SH, Lobley GE, Holtrop G, Ince J, Johnstone AM, Louis P, Flint HJ.  2008.  Human colonic microbiota associated with diet, obesity and weight loss. International Journal of Obesity. 32:1720-1724.
Ducreux LJM, Morris WL, Prosser IM, Morris JA, Beale MH, Wright F, Shepherd T, Bryan GJ, Hedley PE, Taylor MA.  2008.  Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes. Journal of Experimental Botany. 59:4219-4231. Abstract
Ducreux LJM, Morris WL, Hedley PE, Shepherd T, Davies HV, Millam S, Taylor MA.  2005.  Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein. Journal of Experimental Botany. 56:81-89. Abstract
Ducreux LJM, Morris WL, Taylor MA, Millam S.  2005.  Agrobacterium-mediated transformation of Solanum phureja. Plant Cell Reports. 24:10-14. Abstract
Duarte IM, De Almeida MTM, Brown DJF, Marques I, Neilson R, Decraemer W.  2010.  Phylogenetic relationships, based on SSU rDNA sequences, among the didelphic genera of the family Trichodoridae from Portugal. Nematology. 12:171-180.
Druka A, Potokina E, Luo ZW, Jiang N, Chen XW, Kearsey MJ, Waugh R.  2010.  Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.
Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Guzy-Wrobelska J, Ramsay L, Druka I, Grant I, Macaulay M et al..  2010.  Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38:683-688.
Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WTB, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A et al..  2008.  Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork. BMC Genetics. 9:-73. Abstract
Druka A, Potokina E, Luo ZW, Bonar N, Druka I, Zhang L, Marshall DF, Steffenson BJ, Close TJ, Wise RP et al..  2008.  Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley. Theoretical and Applied Genetics. 117:261-272. Abstract
Druka A, Muehlbauer G, Druka I, Caldo R, Baumann U, Rostoks N, Schreiber A, Wise R, Close T, Kleinhofs A et al..  2006.  An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics. 6:202-211. Abstract
Dos Reis J FB, Simon MF, Gross E, Boddey RM, Elliott GN, Neto NE, Loureiro MdeF, de Queiroz LP, Scotti MR, Chen W-M et al..  2010.  Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
de Dorlodot S, Forster BP, Pag L, Price AH, Tuberosa R, Draye X.  2007.  Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science. 12:474-481. Abstract
Donn S, Griffiths BS, Neilson R, Daniell TJ.  2008.  DNA extraction from soil nematodes for multi-sample community studies. Applied Soil Ecology. 38:20-26. Abstract
Donahoo R, Blomquist CL, Thomas SL, Moulton JK, Cooke DEL, Lamour KH.  2006.  Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycological Research. 110:1309-1322. Abstract
Dobson G, Shepherd T, Verrall SR, Conner S, McNicol JW, Ramsay G, Shepherd LVT, Davies HV, Stewart D.  2008.  Phytochemical diversity in tubers of potato cultivars and landraces using a GC-MS metabolomics approach. Journal of Agricultural and Food Chemistry. 56:10280-10291. Abstract
Dobson G, Shepherd T, Verrall SR, Griffiths DW, Ramsay G, McNicol JW, Davies HV, Stewart D.  2010.  A metabolomics study of cultivated potato (Solanum tuberosum) groups, Andigena, Phureja, Stenotomum and Tuberosum using gas chromatography-mass spectrometry. Journal of Agricultural and Food Chemistry. 58:1214-1223.
Dixon ER, Blackwell MSA, Dhanoa MS, Berryman Z, de la Fuente Martinez N, Junquera D, Martinez A, Murray PJ, Kemp HF, Meier-Augenstein W et al..  2010.  Measurement at the field scale of soil . Rapid Communications in Mass Spectrometry. 24:511-518.
Dimier C, Brunet C, Geider RD, Raven JA.  2009.  Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnology and Oceanography. 54:823-836.
van Dijk JP, Cankar K, Scheffer SJ, Beenen HGJ, Shepherd LVT, Stewart D, Davies HV, Wilcockson SJ, Leifert C, Gruden K et al..  2009.  Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract
Dietrich C, Miller J, McKenzie G, Palkovics L, Bal E, Palukaitis P, Maiss E.  2007.  No recombination detected between potyvirus mixed infections and between potyvirus derived transgenes and heterologous challenging potyviruses. Environmental Biosafety Research. 6:207-218. Abstract
Dick MA, Dobbie K, Cooke DEL, Brasier CM.  2006.  Phytophthora captiosa sp. nov and Phytophthora fallax sp. nov causing crown dieback of Eucalyptus in New Zealand. Mycological Research. 110:393-404. Abstract
Denwood MJ, Reid SWJ, Love S, Nielsen MK, Matthews L, McKendrick IJ, Innocent GT.  2010.  Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.
Denoys-Rothan B, Chartier P, Petit A, Gordon S, Graham J, Dolan A, Hofer M, Faedi W, Malteni M, Baruzzi G et al..  2008.  Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.
Dennis PG, Hirsch PR, Smith SJ, Taylor RG, Valsami-Jones E, Miller AJ.  2009.  Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
Dennis PG, Miller AJ, Clark IM, Taylor RG, Valsami-Jones E, Hirsch PR.  2008.  A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
Deng H, Zhang B, Yin R, Wang HL, Mitchell SM, Griffiths BS, Daniell TJ.  2010.  Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.
Dekker LW, Hallett PD, Lichner L, Novak V, Sir M.  2006.  Introduction to biohydrology. BiologiaBiohydrology, Special Issue, Biologia 61/Supplement 19. 61, Suppl 19:223-224. Abstract
Deeks LK, Bengough AG, Stutter MI, Young IM, Zhang X.  2008.  Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348:431-441. Abstract
Debeljak M, Squire GR, Demsar D, Young MW, Dzeroski S.  2008.  Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2009.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
De Maayer P, Chan WY, Venter SN, Toth IK, Birch PRJ, Joubert F, Coutinho TA.  2010.  Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
Dawson IK, Hedley PE, Guarino L, Jaenicke H.  2009.  Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.
Davies HV, Shepherd LVT, Stewart D, Frank T, R R, Engel K-H.  2010.  Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.
Davies HV, Bryan GJ, Taylor MA.  2008.  Advances in functional genomics and genetic modification of potato (Review). Potato Research. 51:283-299. Abstract
Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al..  2005.  Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
Davies HV.  2010.  The role of 'omics' technologies in food safety assessment. Food Control. 21:1601-1610.
Davies HV.  2005.  GM organisms and the EU regulatory environment.. Proceedings of the Nutrition Society. 64:481-486.
Davidson RS, Marion G, Hutchings MR.  2008.  Effects of host social hierarchy on disease persistence. Journal of Theoretical Biology. 253:424-433. Abstract
Davidson RS, Marion G, White PCL, Hutchings MR.  2009.  Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al..  2007.  Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.
Dagleish MP, Hamilton S, Gonz L, Eaton SL, Steele PJ, Finlayson J, Sis S, Pang YP, Sales J, Chianini F et al..  2010.  Digestion and transportation of bovine spongiform encephalopathy-derived prion protein in the sheep intestine. Journal of General Virology. 91:3116-3123.
Dagleish MP, Finlayson J, Bayne C, MacDonald S, Sales J, Hodgson JC.  2010.  Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.
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Cummings SP, Gyaneshwar P, Vinuesa P, Farruggia FT, Andrews M, Humphry D, Elliott GN, Nelson A, Orr C, Pettitt D et al..  2009.  Nodulation of Sesbania species by Rhizobium (Agrobacterium) strain IRBG74 and other Rhizobia. Environmental Microbiology. 11:2510-2525.
Cullen DW, Toth IK, Pitkin Y, Booham K, Walsh I, Barker I, Lees AK.  2005.  Use of quantitative molecular diagnostic assays to investigate Fusarium dry rot in potato stocks and soil. Phytopathology. 95:1462-1471. Abstract
Cullen DW, Squire GR, McNicol JW, Jacobs JH, Osborne JL, Ford L, Ramsay G, Scrimgeour CM, Young MW.  2008.  Development and validation of gas chromatography and real-time quantitative PCR for the quantification of landscape-scale gene flow from varieties of high erucic acid (HEAR) oilseed rape. Journal of the Science of Food and Agriculture. 88:2253-2264. Abstract
Cuesta-Marcos A, Igartua E, Ciudad FJ, Codesal P, Russell JR, Molina-Cano J-L, Moralejo MA, Sz P, Gracia MP, Lasa JM et al..  2008.  Heading date QTL in a spring x winter barley cross evaluated in Mediterranean environments. Molecular Breeding. 21:455-471. Abstract
Crosley LK, Duthie SJ, Polley AC, Bouwman FG, Heim C, Mulholland F, Horgan GW, Johnson IT, Mariman EC, Elliott RM et al..  2009.  Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes and Nutrition. 4:95-102.
Crampton BG, Hein I, Berger DK.  2009.  Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
Cousens C, Graham M, Sales J, Dagleish MP.  2008.  Evaluation of the efficacy of clinical diagnosis of ovine pulmonary adenocarcinoma. Veterinary Record. 162:88-90. Abstract
Coulthurst SJ, Lilley KS, Hedley PE, Liu H, Toth IK, Salmond GPC.  2008.  DsbA plays a critical and multifaceted role in the production of secreted virulence factors by the phytopathogen, Erwinia carotovora subsp. atroseptica. Journal of Biological Chemistry. 283:23739-23753. Abstract
Coucheney E, Daniell TJ, Chenu C, Nunan N.  2008.  Gas chromatographic metabolic profiling: A sensitive tool for functional microbial ecology. Journal of Microbiological Methods. 75:491-500. Abstract
Cortet J, Griffiths BS, Bohanec M, Demsar D, Andersen MN, Caul S, Birch ANE, Pernin C, Tabone E, de Vaufleury A et al..  2007.  Evaluation of effects of transgenic Bt maize on microarthropods in a European multi-site experiment. Pedobiologia. 51:207-218. Abstract
Cortet J, Andersen MN, Caul S, Griffiths BS, Joffre R, Lacroix B, Sausse C, Thompson J, Krogh PH.  2006.  Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract
Cornulier T, Elston DA, Arcese P, Benton TG, Douglas DJT, Lambin X, Reid J, Robinson RA, Sutherland WJ.  2009.  Estimating the annual number of breeding attempts from breeding dates using mixture models. Ecology Letters. 12:1184-1193.
Corbett M, Virtue S, Bell K, Birch PRJ, Burr T, Hyman L, Lilley K, Poock S, Toth IK, Salmond G.  2005.  Identification of a new quorum-sensing-controlled virulence factor in Erwinia carotovora subsp. atroseptica secreted via the type II targeting pathway. Molecular Plant-Microbe Interactions. 18:334-342. Abstract
Cooke DEL.  2007.  Tracking the sudden oak death pathogen. Molecular Ecology. 16:3735-3736.
Cooke DEL, Schena L, Cacciola SO.  2007.  Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract
Cooke DEL, Jung T, Williams NA, Schubert R, Osswald W, Duncan JM.  2005.  Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina. Forest Pathology. 35:57-70. Abstract
Cook AR, Otten W, Marion G, Gibson GJ, Gilligan CA.  2007.  Estimation of multiple transmission rates for epidemics in heterogeneous populations. Proceedings of the National Academy of Sciences, USA. 104:20392-20397. Abstract
Comadran J, Thomas WTB, van Eeuwijk FA, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A, Benbelkacem A et al..  2009.  Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
Comadran J, Russell JR, van Eeuwijk FA, Ceccarelli S, Grando S, Baum M, Stanca AM, Pecchioni N, Mastrangelo AM, Akar T et al..  2008.  Mapping adaptation of barley to droughted environments. Euphytica. 161:35-45. Abstract
Collazo C, Ramos PL, Chacon O, Borroto CJ, Lopez Y, Pujol M, Thomma BPHJ, Hein I, Borras-Hidalgo O.  2006.  Phenotypical and molecular characterization of Tomato mottle Taino virus - Nicotiana megalosiphon interaction. Physiological and Molecular Plant Pathology. 67:231-236. Abstract
Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JWS, Green PJ, Barton GJ, Hutvagner G.  2009.  Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA. 15:2147-2160.
Cockram J, White J, Zuluaga D, Smith D, Comadran J, Macaulay M, Luo ZW, Kearsey MJ, Werner P, Harrap D et al..  2010.  Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.
Cockell CS, L A, Fridlund M, Herbst TM, Kaltenegger L, Absil O, Beichman C, Benz W, Blanc M, Brack A et al..  2009.  Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
Cockell CS, Kaltenegger L, Raven JA.  2009.  Cryptic photosynthesis - extrasolar planetary oxygen without a surface biological signature. Astrobiology. 9:623-636.
Cockell CS, Raven JA.  2007.  Ozone and life on the Archaean earth. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1889-1901. Abstract
Cock PJA, Fields CJ, Goto N, Heuer ML, Rice PM.  2010.  The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research. 38:1767-1771.
Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, Dalko A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B et al..  2009.  Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.
Cock PJA, Whitworth DE.  2010.  Evolution of relative reading frame bias in unidirectional prokaryotic gene overlaps. Molecular Biology and Evolution. 27:753-756.
Coates EM, Popa G, Gill CIR, McCann M, McDougall GJ, Stewart D, Rowland I.  2007.  Colon-available raspberry extract exhibit anti-cancer effects on in vitro models of colon cancer. Proceedings of the Nutrition Society. 66:67A-67A.
Coates EM, Popa G, Gill CIR, McCann MJ, McDougall GJ, Stewart D, Rowland I.  2007.  Colon-available raspberry polyphenols exhibit anti-cancer effects on in vitro models of colon cancer. Journal of Carcinogenesis. 6:1-13. Abstract
Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S et al..  2009.  Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics. 10:-582.
Clayton SJ, Read DB, Murray PJ, Gregory PJ.  2008.  Exudation of alcohol and aldehyde sugars from roots of defoliated Lolium perenne L. grown under sterile conditions. Journal of Chemical Ecology. 34:1411-1421. Abstract
Clayton SJ, Clegg CD, Bristow AW, Gregory PJ, Headon DM, Murray PJ.  2010.  Movement of newly assimilated 13C carbon in the grass Lolium perenne and its incorporation into rhizosphere microbial DNA. Rapid Communications in Mass Spectrometry. 24:535-540.
Clark EL, Karley AJ, Hubbard SF.  2010.  Insect endosymbionts: manipulators of insect herbivore trophic interactions? Protoplasma. 244:25-51.
Chung BN, Canto T, Palukaitis P.  2007.  Stability of recombinant plant viruses containing genes of unrelated plant viruses. Journal of General Virology. 88:1347-1355. Abstract
Christie WW, Dobson G, Adlof RO.  2007.  A practical guide to the isolation, analysis and identification of conjugated linoleic acid. Lipids. 42:1073-1084. Abstract
Christensen NM, Oparka KJ, Tilsner J.  2010.  Advances in imaging RNA in plants. Trends in Plant Science. 15:196-203.
Chope GA, Terry LA, White PJ.  2007.  The effect of 1-methylcyclopropene (1-MCP) on the physical and biochemical characteristics of onion cv. SS1 bulbs during storage. Postharvest Biology and Technology. 44:131-140. Abstract
Choi SK, Palukaitis P, Min BE, Lee MY, Choi JK, Ryu KH.  2005.  Cucumber mosaic virus 2a polymerase and 3a movement proteins independently affect both virus movement and the timing of symptom development in zucchini squash. Journal of General Virology. 86:1213-1222. Abstract
Chloupek O, Forster BP, Thomas WTB.  2006.  The effect of semi-dwarf genes on root system size in field-grown barley. Theoretical and Applied Genetics. 112:779-786. Abstract
Chichkova NV, Galiullina RA, Taliansky ME, Vartapetian AB.  2008.  Tissue disruption activates a plant caspase-like protease with TATD cleavage specificity. Plant Stress. 2:89-95. Abstract
Chichkova NV, Shaw J, Galiullina RA, Drury GE, Tuzhikov AI, Kim S-H, Kalkum M, Hong TB, Gorshkova EN, Torrance L et al..  2010.  Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity. EMBO Journal. 29:1149-1161.
Chesnay C, Kumar A, Pearce SR.  2007.  Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract
Chen XY, Daniell TJ, Neilson R, O'Flaherty V, Griffiths BS.  2010.  A comparison of molecular methods for monitoring soil nematodes and their use as biological indicators. European Journal of Soil Science. 46:319-324.
Chen Q, Rehman S, Smant G, Jones JT.  2005.  Functional analysis of pathogenicity proteins of the potato cyst nematode Globodera rostochiensis using RNAi. Molecular Plant-Microbe Interactions. 18:621-625. Abstract
Chen XW, Niks RE, Hedley PE, Morris J, Druka A, Marcel TC, Vels A, Waugh R.  2010.  Differential gene expression in nearly isogenic lines with QTL for partial resistance to Puccinia hordei in barley. BMC Genomics. 11:-629.
Chen XW, Hackett CA, Niks RE, Hedley PE, Booth C, Druka A, Marcel TC, Vels A, Bayer M, Milne I et al..  2010.  An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One. 5:-e8598.
Chen W-M, James EK, Chou J-H, Sheu S-Y, Yang S-Z, Sprent JI.  2005.  β-Rhizobia from Mimosa pigra, a newly discovered invasive plant in Taiwan. New Phytologist. 168:661-675. Abstract
Chatterjee A, Horgan GW, Theobald CM.  2008.  Exposure assessment for pesticide intake from multiple food products: a Bayesian latent-variable approach. Risk Analysis. 28:1727-1736. Abstract
Chapman SN, Faulkner C, Kaiserli E, Garcia-Mata C, Savenkov EI, Roberts AG, Oparka KJ, Christie JM.  2008.  The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection. Proceedings of the National Academy of Sciences, USA. 105:20038-20043. Abstract
Chapman S, Oparka KJ, Roberts AG.  2005.  New tools for in vivo fluorescence tagging. Current Opinion in Plant Biology. 8:565-573. Abstract
Chaerle L, Leinonen I, Jones HG, van der Straeten D.  2007.  Monitoring and screening plant populations with combined thermal and chlorophyll fluorescence imaging. Journal of Experimental Botany. 58:773-784. Abstract
Cerm J, Gasp J, De Lorenzi F, Jones HG.  2007.  Stand biometry and leaf area distribution in an old olive grove at Andria, southern Italy. Annals of Forest Science. 64:491-501. Abstract
Caumette G, Ouypornkochagorn S, Scrimgeour CM, Raab A, Feldmann J.  2007.  Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract
Castillo NRF, Reed BM, Graham J, Fern F, Bassil NV.  2010.  Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.
Castelli L, Bryan GJ, Blok VC, Ramsay G, Sobczak M, Gillespie T, Phillips MS.  2006.  Investigations of Globodera pallida invasion and syncytia formation within roots of the susceptible potato cultivar D. Nematology. 8:103-110. Abstract
Castelli L, Bryan GJ, Blok VC, Ramsay G, Phillips MS.  2005.  Life stage responses observed amongst fifteen wild Solanum species to resistant Globodera pallida. Nematology. 7:701-711. Abstract
Casa R, Baret F, Buis S, Lopez-Lozano R, Pascucci S, Palombo A, Jones HG.  2010.  Estimation of maize canopy properties from remote sensing by inversion of 1-D and 4-D models. Precision Agriculture. 11:319-334.
Casa R, Jones HG.  2005.  LAI retrieval from multiangular image classification and inversion of a ray tracing model. Remote Sensing of Environment. 98:414-428.
Carr JP, Lewsey MG, Palukaitis P.  2010.  Signaling in induced resistance. Advances in Virus Research. 76:57-121.
Caron-Lormier G, Bohan DA, Hawes C, Raybould A, Haughton AJ, Humphry RW.  2009.  How might we model an ecosystem? Ecological Modelling. 220:1935-1949.
Caron-Lormier G, Humphry RW, Bohan DA, Hawes C, Thorbek P.  2008.  Asynchronous and synchronous updating in individual-based models. Ecological Modelling. 212:522-527. Abstract
Carfrae JA, Sheppard LJ, Raven JA, Leith ID, Crossley A.  2007.  Potassium and phosphorus additions modify the response of Sphagnum capillifolium growing on a Scottish ombrotrophic bog to enhanced nitrogen deposition. Applied Geochemistry. 22:1111-1121. Abstract
Canto T, Uhrig JF, Swanson MM, Wright KM, MacFarlane SA.  2006.  Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract
Canetta E, Kim S-H, Kalinina NO, Shaw J, Adya AK, Gillespie T, Brown JWS, Taliansky ME.  2008.  A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro. Journal of Molecular Biology. 376:932-937. Abstract
Campbell R, Ducreux LJM, Morris WL, Morris JA, Suttle JC, Ramsay G, Bryan GJ, Hedley PE, Taylor MA.  2010.  The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.
Cameron AR, Anton S, Melville L, Houston NP, Dayal S, McDougall GJ, Stewart D, Rena G.  2008.  Black tea polyphenols mimic insulin/insulin-like growth factor-1 signalling to the longevity factor FOXO1a. Aging Cell. 7:69-77. Abstract
Caldwell KS, Russell JR, Langridge P, Powell W.  2006.  Extreme population-dependent linkage disequilibrium detected in an inbreeding plant species, Hordeum vulgare. Genetics. 172:557-567. Abstract
Cacciola SO, Chimento A, Pane A, Cooke DEL, Magnano di San Lio G.  2005.  Root and foot rot of Lantana caused by Phytophthora cryptogea. Plant Disease. 89:909-909. Abstract
Cacciola SO, Spica D, Cooke DEL, Raudino F, San Lio GMD.  2006.  Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract
Cacciola SO, Pane A, Cooke DEL, Raudino F, Magnano di San Lio G.  2006.  First report of brown rot and wilt of fennel caused by Phytophthora megasperma in Italy. Plant Disease. 90:-110. Abstract
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Bychek EA, Dobson G, Harwood JL, Guschina IA.  2005.  Daphnia magna can tolerate short-term starvation without major changes in lipid metabolism. Lipids. 40:599-608. Abstract
Button DK, Gartland KMA, Ball LD, Natanson L, Gartland JS, Lyon GD.  2006.  DRASTIC-INSIGHTS: Querying information in a plant gene expression database. Nucleic Acids Research. 34:D712-D716. Abstract
Butler A, Glasbey CA.  2008.  A latent Gaussian model for compositional data with zeros. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:505-520. Abstract
Butler A, Doherty RM, Marion G.  2009.  Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
Butler A, Heffernan JE, Tawn JA, Flather RA, Horsburgh KJ.  2007.  Extreme value analysis of decadal variations in storm surge elevations. Journal of Marine Systems. 67:189-200. Abstract
Bryan GJ, Hein I.  2008.  Genomic resources and tools for gene function analysis in potato. International Journal of Plant Genomics. 2008:-216513.
Bruneau PMC, Davidson DA, Grieve IC, Young IM, Nunan N.  2005.  The effects of soil horizons and faunal excrement on bacterial distribution in an upland grassland soil. FEMS Microbiology Ecology. 52:139-144. Abstract
Brulisauer F, Lewis FI, Ganser AG, McKendrick IJ, Gunn GJ.  2010.  The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D et al..  2008.  The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract
Brown KL, Wathne GJ, Sales J, Bruce ME, Mabbott NA.  2009.  The effects of host age on follicular dendritic cell status dramatically impair scrapie agent neuroinvasion in aged mice. Journal of Immunology. 183:5199-5207.
Brown JWS, Shaw PJ, Shaw P, Marshall DF.  2005.  Arabidopsis nucleolar protein database (AtNoPDB). Nucleic Acids Research. 33:D633-D636.
Brown JWS, Shaw PJ.  2008.  The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.
Brown JWS, Marshall DF, Echeverria M.  2008.  Intronic noncoding RNAs and splicing. Trends in Plant Science. 13:335-342. Abstract
Brooks DR, Clark SJ, Perry JN, Bohan DA, Champion GT, Firbank LG, Haughton AJ, Hawes C, Heard MS, Woiwod IP.  2005.  Invertebrate biodiversity in maize following withdrawal of triazine herbicides. Proceedings of the Royal Society of London, Series B. 272:1497-1502. Abstract
Broadley MR, Alcock J, Alford J, Cartwright P, Foot I, Fairweather-Tait SJ, Hart DJ, Hurst R, Knott P, McGrath SP et al..  2010.  Selenium biofortification of high-yielding winter wheat (Triticum aestivum L.) by liquid or granular Se fertilisation. Plant and Soil. 332:5-18.
Broadley MR, White PJ, Hammond JP, Zelko I, Lux A.  2007.  Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
Broadley MR, White PJ, Hammond JP, Graham NS, Bowen HC, Emmerson ZF, Fray RG, Iannetta PPM, McNicol JW, May ST.  2008.  Evidence of neutral transcriptome evolution in plants. New Phytologist. 180:587-593. Abstract
Broadley MR, White PJ.  2010.  Eats roots and leaves. Can edible horticultural crops address dietary calcium, magnesium and potassium deficiencies? Proceedings of the Nutrition Society. 69:601-612.
Broadley MR, Hammond JP, White PJ, Salt DE.  2010.  An efficient procedure for normalising ionomics data for Arabidopsis thaliana. New Phytologist. 186:270-274.
Broadley MR, O'Lochlainn S, Hammond JP, Bowen HC, Cakmak I, Eker S, Erdem H, King GJ, White PJ.  2010.  Shoot zinc (Zn) concentration varies widely within Brassica oleracea L. and is affected by soil Zn and phosphorus (P) levels. Journal of Horticultural Science & Biotechnology. 85:375-380.
Broadley MR, Hammond JP, King GJ, Astley D, Bowen HC, Meacham MC, Mead A, Pink DAC, Teakle G, Hayden R et al..  2008.  Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea. Plant Physiology. 146:1707-1720. Abstract
Brierley JL, Stewart JA, Lees AK.  2009.  Quantifying potato pathogen DNA in soil. Applied Soil Ecology. 41:234-238.
Brennan RM, Jorgensen L, Gordon SL, Loades K, Hackett CA, Russell JR.  2009.  The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae). Theoretical and Applied Genetics. 118:205-211. Abstract
Brennan RM, Graham J.  2009.  Improving fruit quality in Rubus and Ribes through breeding (Invited review). Functional Plant Science and Biotechnology. 3 Special Issue 1:22-29.
Braga RA, Dupuy L, Pasqual M, Cardoso RR.  2009.  Live biospeckle laser imaging of root tissues. European Biophysics Journal. 38:679-686. Abstract
Bradshaw JE, Hackett CA, Pande B, Waugh R, Bryan GJ.  2008.  QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp. tuberosum). Theoretical and Applied Genetics. 116:193-211. Abstract
Bradshaw JE, Titley M, Wilson RN.  2009.  Single seed descent as a breeding method for swedes (Brassica napus L. var. napobrassica Peterm). Euphytica. 169:387-401.
Bradshaw JE, Bryan GJ, Lees AK, McLean K, Solomon-Blackburn RM.  2006.  Mapping the R10 and R11 genes for resistance to late blight (Phytophthora infestans) present in the potato (Solanum tuberosum) R-gene differentials of Black. Theoretical and Applied Genetics. 112:744-751. Abstract
Bradshaw JE, Ramsay G.  2005.  Utilisation of the Commonwealth Potato Collection in potato breeding. Euphytica. 146:9-19. Abstract
Bradshaw JE.  2009.  A genetic perspective on yield plateau in potato (Review). Potato Journal (Indian). 36:79-94.
Bradshaw JE.  2008.  The Canon of Potato Science: 4. Tetrasomic Inheritance. Potato Research. 50:219-222. Abstract
Bradshaw JE, Hackett CA, Lowe R, McLean K, Stewart HE, Tierney I, Vilaro MDR, Bryan GJ.  2006.  Detection of a quantitative trait locus for both foliage and tuber resistance to late blight [Phytophthora infestans (Mont.) de Bary] on chromosome 4 of a dihaploid potato clone (Solanum tubersoum subsp. tuberosum). Theoretical and Applied Genetics. 113:943-951. Abstract
Bradshaw JE.  2008.  The Canon of Potato Science: 2. Population Genetics. Potato Research. 50:211-214. Abstract
Bown JL, Pachepsky E, Eberst A, Bausenwein U, Millard P, Squire GR, Crawford JW.  2007.  Consequences of intraspecific variation for the structure and function of ecological communities Part 1: Model development and predicted patterns of diversity. Ecological Modelling. 207:264-276. Abstract
Bowen SR, Gregorich EG, Hopkins DW.  2009.  Biochemical properties and biodegradation of dissolved organic matter from soils. Biology and Fertility of Soils. 45:733-742. Abstract
Bos JIB, Kanneganti T-D, Young C, Cakir C, Huitema E, Win J, Armstrong MR, Birch PRJ, Kamoun S.  2006.  The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana. Plant Journal. 48:165-176. Abstract
Bos JIB, Armstrong MR, Gilroy EM, Boevink P, Hein I, Taylor RM, Tian ZD, Engelhardt S, Vetukuri RR, Harrower BE et al..  2010.  Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.
Bontemps C, Elliott GN, Simon MF, Dos Reis J FB, Gross E, Lawton RC, Neto NE, Loureiro MdeF, de Faria SM, Sprent JI et al..  2010.  Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.