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Publications list

Found 82 results

Filters: Keyword is f/y 2004/05  [Clear All Filters]
2006
Hamza O, Bengough AG, Bransby MF, Davies MCR, Hallett PD.  2006.  Biomechanics of plant roots: estimating localised deformation with particle image velocimetry. Biosystems Engineering. 94:119-132. Abstract
Gregory AS, Whalley WR, Watts CW, Bird NRA, Hallett PD, Whitmore AP.  2006.  Calculation of the compression index and precompression stress from soil compression test data. Soil and Tillage Research. 89:45-57. Abstract
Cortet J, Andersen MN, Caul S, Griffiths BS, Joffre R, Lacroix B, Sausse C, Thompson J, Krogh PH.  2006.  Decomposition processes under Bt (Bacillus thuringiensis) maize: results of a multi-site experiment. Soil Biology & Biochemistry. 38:195-199. Abstract
Begg GS, Hockaday S, McNicol JW, Askew M, Squire GR.  2006.  Modelling the persistence of volunteer oilseed rape (Brassica napus). Ecological Modelling. 198:195-207. Abstract
Griffiths BS, Donn S, Neilson R, Daniell TJ.  2006.  Molecular sequencing and morphological analysis of a nematode community. Applied Soil Ecology. 32:325-337. Abstract
Glidewell SM.  2006.  NMR imaging of developing barley grains. Journal of Cereal Science. 43:70-78. Abstract
Torrance L, Ziegler A, Pittman H, Paterson M, Toth R, Eggleston I.  2006.  Oriented immobilisation of engineered single-chain antibodies to develop biosensors for virus detection. Journal of Virological Methods. 134:164-170. Abstract
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser JI, Wheatley RE, McNicol JW, Millard P.  2006.  Sheep-urine-induced changes in soil microbial community structure. FEMS Microbiology Ecology. 56:310-320. Abstract
Hassall M, Adl S, Berg M, Griffiths BS, Scheu S.  2006.  Soil fauna-microbe interactions: towards a conceptual framework for research. European Journal of Soil Biology. 42:S54-S60. Abstract
Dunbabin V, McDermott S, Bengough AG.  2006.  Upscaling from rhizosphere to whole root system: modelling the effects of phospholipid surfactants on water and nutrient uptake. Plant and Soil. 283:57-72. Abstract
2005
Pendle AF, Clark GP, Boon R, Lewandowska D, Lam YW, Andersen J, Mann M, Lamond AI, Brown JWS, Shaw PJ.  2005.  Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Molecular Biology of the Cell. 16:260-269.
Hirth JR, McKenzie BM, Tisdall JM.  2005.  Ability of seedling roots of Lolium perenne L. to penetrate soil from artificial biopores is modified by soil bulk density, biopore angle and biopore relief. Plant and Soil. 272:327-336. Abstract
Blok VC.  2005.  Achievements in and future prospects for molecular diagnostics for plant-parasitic nematodes. Canadian Journal of Plant Pathology. 27:176-185. Abstract
Ducreux LJM, Morris WL, Taylor MA, Millam S.  2005.  Agrobacterium-mediated transformation of Solanum phureja. Plant Cell Reports. 24:10-14. Abstract
Raven JA, Ball LA, Beardall J, Giordano M, Maberly SC.  2005.  Algae lacking carbon concentrating mechanisms. Canadian Journal of Botany. 83:879-890.
Bahar B, Monahan FJ, Moloney AP, O'Kiely P, Scrimgeour CM, Schmidt O.  2005.  Alteration of the carbon and nitrogen stable isotope composition of beef by substitution of grass silage with maize silage. Rapid Communications in Mass Spectrometry. 19:1937-1942. Abstract
Masoudi-Nejad A, Nasuda S, Bihoreau M-T, Waugh R, Endo TR.  2005.  An alternative to radiation hybrid mapping for large-scale genome analysis in barley. Molecular Genetics and Genomics. 274:589-594. Abstract
Fanelli E, Di Vito M, Jones JT, De Giorgi C.  2005.  Analysis of chitin synthase function in a plant parasitic nematode, Meloidogyne artiellia, using RNAi. Gene. 349:87-95. Abstract
Armstrong MR, Whisson SC, Pritchard L, Bos JIB, Venter E, Avrova AO, Rehmany AP, B U, Brooks K, Cherevach I et al..  2005.  An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognised in the host cytoplasm. Proceedings of the National Academy of Sciences, USA. 102:7766-7771. Abstract
Brown JWS, Shaw PJ, Shaw P, Marshall DF.  2005.  Arabidopsis nucleolar protein database (AtNoPDB). Nucleic Acids Research. 33:D633-D636.
McDougall GJ, Dobson P, Smith P, Blake A, Stewart D.  2005.  Assessing potential bioavailability of raspberry anthocyanins using an in vitro digestion system. Journal of Agricultural and Food Chemistry. 53:5896-5904. Abstract
Fenton B, Malloch G, Woodford JAT, Foster SP, Anstead J, Denholm I, King L, Pickup J.  2005.  The attack of the clones: tracking the movement of insecticide-resistant peach-potato aphids Myzus persicae (Hemiptera: Aphididae). Bulletin of Entomological Research. 95:483-494. Abstract
Hancock RD, Viola R.  2005.  Biosynthesis and catabolism of L-ascorbic acid in plants. Critical Reviews in Plant Sciences. 24:167-188. Abstract
Taylor MA, Ramsay G.  2005.  Carotenoid biosynthesis in plant storage organs: recent advances and prospects for improving plant food quality (Review). Physiologia Plantarum. 124:143-151. Abstract
Thomson NR, Yeats C, Bell K, Holden MTG, Bentley SD, Livingstone M, Cerde AM, Harris B, Doggett J, Ormond D et al..  2005.  The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to inter-species variation.. Genome Research. 15:629-640. Abstract
Liu J, Crawford JW, Leontiou KI.  2005.  Collapse of single stable states via a fractal attraction basin: analysis of a representative metabolic network. Proceedings of the Royal Society of London Series A. 461:2327-2338. Abstract
Woodhead M, Russell JR, Squirrell J, Hollingsworth PM, MacKenzie K, Gibby M, Powell W.  2005.  Comparative analysis of population genetic structure in Athyrium distentifolium (Pteridophyta) using AFLPs and SSRs from anonymous and transcribed gene regions. Molecular Ecology. 14:1681-1695. Abstract
Ibrahim AFM, Hedley PE, Cardle L, Kruger W, Marshall DF, Muehlbauer G, Waugh R.  2005.  A comparative analysis of transcript abundance using SAGE and Affymetrix arrays. Functional & Integrative Genomics. 5:163-174. Abstract
Tzortzakakis EA, Trudgill DL.  2005.  A comparative study of the thermal time requirements for embryogenesis in Meloidogyne javanica and M. incognita. Nematology. 7:313-315. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Scrimgeour CM, Andersen MN, Cortet J, Mess A, Sausse C, Lacroix B et al..  2005.  A comparison of soil microbial community structure, protozoa and nematodes in field plots of conventional and genetically modified maize expressing the Bacillus thuringiensis CryIAb toxin. Plant and Soil. 275:135-146. Abstract
Lehesranta SJ, Davies HV, Shepherd LVT, Nunan N, McNicol JW, Auriola S, Koistinen KM, Suomalainen S, Kokko HI, K SO.  2005.  Comparison of tuber proteomes of potato varieties, landraces and genetically modified lines. Plant Physiology. 138:1690-1699. Abstract
Swanston JS, Newton AC, Brosnan JM, Fotheringham A, Glasgow E.  2005.  Determining the spirit yield of wheat varieties and variety mixtures. Journal of Cereal Science. 42:127-134. Abstract
Hussain S, Lees AK, Duncan JM, Cooke DEL.  2005.  Development of a species-specific and sensitive detection assay for Phytophthora infestans and its application for monitoring of inoculum in tubers and soil. Plant Pathology. 54:373-382. Abstract
Silvar C, Duncan JM, Cooke DEL, Williams NA, Diaz J, Merino F.  2005.  Development of specific PCR primers for identification and detection of Phytophthora capsici Leon. European Journal of Plant Pathology. 112:43-52.
McDougall GJ, Shpiro F, Dobson P, Smith P, Blake A, Stewart D.  2005.  Different polyphenolic components of soft fruits inhibit . Journal of Agricultural and Food Chemistry. 53:2760-2766. Abstract
Wang J, Zhang X, Bengough AG, Crawford JW.  2005.  Domain-decomposition method for parallel lattice Boltzmann simulation of incompressible flow in porous media. Physical Review E. 72:016706-1-016706-11. Abstract
Bruneau PMC, Davidson DA, Grieve IC, Young IM, Nunan N.  2005.  The effects of soil horizons and faunal excrement on bacterial distribution in an upland grassland soil. FEMS Microbiology Ecology. 52:139-144. Abstract
Gomes F, Carr MKV, Squire GR.  2005.  Effects of water availability and vine harvesting frequency on the productivity of sweet potato in Southern Mozambique. IV. Radiation, interception, dry matter production and partitioning. Experimental Agriculture. 41:93-108. Abstract
Bohan DA, Boffey CWH, Brooks DR, Clark SJ, Dewar AM, Firbank LG, Haughton AJ, Hawes C, Heard MS, May MJ et al..  2005.  Effects on weed and invertebrate abundance and diversity of herbicide management in genetically modified herbicide-tolerant winter-sown oilseed rape. Proceedings of the Royal Society of London, Series B. 272:463-474. Abstract
Grenville-Briggs LJ, Avrova AO, Bruce CR, Williams A, Whisson SC, Birch PRJ, van West P.  2005.  Elevated amino acid biosynthesis in Phytophthora infestans during appressorium formation and potato infection. Fungal Genetics and Biology. 42:244-256. Abstract
Kanyuka K, Druka A, Caldwell DG, Tymon A, McCallum N, Waugh R, Adams MJ.  2005.  Evidence that the recessive bymovirus resistance locus rym4 in barley corresponds to the eukaryotic translation initiation factor 4E gene. Molecular Plant Pathology. 6:449-458. Abstract
Andrews M, Maule HG, Raven JA, Mistry A.  2005.  Extension growth of Impatiens glandulifera at low irradiance: importance of nitrate and potassium accumulation. Annals of Botany. 95:641-648. Abstract
Whisson SC, Avrova AO, Lavrova O, Pritchard L.  2005.  Families of short interspersed elements in the genome of the oomycete plant pathogen, Phytophthora infestans. Fungal Genetics and Biology. 42:351-365. Abstract
Karanastasi E, Decraemer W, Kyriakopoulou PE, Neilson R.  2005.  First report of the stubby-root nematode Paratrichodorus teres associated with artichoke (Cynara scolymus) in Greece. Plant Disease. 89:-685. Abstract
Rangel-Castro JI, Prosser JI, Ostle N, Scrimgeour CM, Killham K, Meharg AA.  2005.  Flux and turnover of fixed carbon in soil microbial biomass of limed and un-limed plots of an upland grassland ecosystem. Environmental Microbiology. 7:544-552. Abstract
Chen Q, Rehman S, Smant G, Jones JT.  2005.  Functional analysis of pathogenicity proteins of the potato cyst nematode Globodera rostochiensis using RNAi. Molecular Plant-Microbe Interactions. 18:621-625. Abstract
Pritchard L, Corne D, Kell D, Rowland J, Winson M.  2005.  A general model of error-prone PCR. Journal of Theoretical Biology. 234:497-509. Abstract
Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR, Powell W.  2005.  Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract
Corbett M, Virtue S, Bell K, Birch PRJ, Burr T, Hyman L, Lilley K, Poock S, Toth IK, Salmond G.  2005.  Identification of a new quorum-sensing-controlled virulence factor in Erwinia carotovora subsp. atroseptica secreted via the type II targeting pathway. Molecular Plant-Microbe Interactions. 18:334-342. Abstract
Adam MAM, Phillips MS, Blok VC.  2005.  Identification of Meloidogyne spp. from North East Libya and comparison of their inter- and intra-specific genetic variation using RAPDs. Nematology. 7:599-609. Abstract
Hancock RD, Viola R.  2005.  Improving the nutritional value of crops through enhancement of L-ascorbic acid (vitamin C) content: rationale and biotechnological opportunities. Journal of Agricultural and Food Chemistry. 53:5248-5257. Abstract
Hawes C, Begg GS, Squire GR, Iannetta PPM.  2005.  Individuals as the basic accounting unit in studies of ecosystem function: functional diversity in shepherd's purse, Capsella. Oikos. 109:521-534. Abstract
Oro V, H J, Karanastasi E, Krnjaic S, Krnjaic D, Brown DJF, Neilson R.  2005.  Inter-population variability of Longidorus euonymus Mali and Hooper, 1974 (Nematoda, Dorylaimida) and comment upon the number of juvenile developmental stages. Helminthologia. 42:155-165. Abstract
Brooks DR, Clark SJ, Perry JN, Bohan DA, Champion GT, Firbank LG, Haughton AJ, Hawes C, Heard MS, Woiwod IP.  2005.  Invertebrate biodiversity in maize following withdrawal of triazine herbicides. Proceedings of the Royal Society of London, Series B. 272:1497-1502. Abstract
Hein I, Williamson S, Russell JR, Powell W.  2005.  Isolation of high molecular weight DNA suitable for BAC library construction from woody perennial soft-fruit species. Biotechniques. 38:69-71. Abstract
Liu J.  2005.  Kinetic constraints for formation of steady states in biochemical networks. Biophysical Journal. 88:3212-3223. Abstract
Casa R, Jones HG.  2005.  LAI retrieval from multiangular image classification and inversion of a ray tracing model. Remote Sensing of Environment. 98:414-428.
Randall TA, Dwyer RA, Huitema E, Beyer K, Cvitanich C, Kelkar H, Ah Fong AMV, Gates K, Roberts S, Yatzkan E et al..  2005.  Large-scale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi. Molecular Plant-Microbe Interactions. 18:229-243. Abstract
Nunan N, Daniell TJ, Singh BK, Papert A, McNicol JW, Prosser JI.  2005.  Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques. Applied and Environmental Microbiology. 71:6784-6792. Abstract
Bisognin DA, Douches DS, Buszka L, Bryan GJ, Wang D.  2005.  Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract
Zhang B, Horn R, Hallett PD.  2005.  Mechanical resilience of degraded soil amended with organic matter. Soil Science Society of America Journal. 69:864-871. Abstract
Ducreux LJM, Morris WL, Hedley PE, Shepherd T, Davies HV, Millam S, Taylor MA.  2005.  Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein. Journal of Experimental Botany. 56:81-89. Abstract
Whisson SC, Avrova AO, van West P, Jones JT.  2005.  A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans. Molecular Plant Pathology. 6:153-163. Abstract
He Y, Jones JT, Armstrong MR, Lamberti F, Moens M.  2005.  The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: Enoplea):considerable economization in the length and structural features of encoded genes. Journal of Molecular Evolution. 61:819-833. Abstract
Kikuchi T, Shibuya H, Jones JT.  2005.  Molecular and biochemical characterization of an endo-. Biochemical Journal. 389:117-125. Abstract
Pemberton CL, Whitehead NA, Sebaihia M, Bell KS, Hyman LJ, Harris SJ, Matlin AJ, Robson ND, Birch PRJ, Carr JP et al..  2005.  Novel quorum sensing-controlled genes in Erwinia carotovora subsp. carotovora: identification of a fungal elicitor homologue in a soft-rotting bacterium. Molecular Plant-Microbe Interactions. 18:343-353. Abstract
Tzortzakakis EA, Adam MAM, Blok VC, Paraskevopoulos C, Bourtzis K.  2005.  Occurrence of resistance-breaking populations of root-knot nematodes on tomato in Greece. European Journal of Plant Pathology. 113:101-105. Abstract
Liu Z, Bos JIB, Armstrong MR, Whisson SC, da Cunha L, Torto-Alalibo T, Win J, Avrova AO, Wright F, Birch PRJ et al..  2005.  Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Molecular Biology and Evolution. 22:659-672. Abstract
Saari SK, Campbell CD, Russell JR, Alexander IJ, Anderson IC.  2005.  Pine microsatellite markers allow roots and ectomycorrhizas to be linked to individual trees. New Phytologist. 165:295-304. Abstract
Moln A, Csorba T, Lakatos L, V, Lacomme C, Burgy J.  2005.  Plant virus-derived small interfering RNAs originate predominantly from highly structured single-stranded viral RNAs. Journal of Virology. 79:7812-7818. Abstract
Jones AT, Cowan GH, McGavin WJ, Roberts IM, Torrance L.  2005.  Production and properties of monoclonal antibodies to Solanum nodiflorum mottle sobemovirus. Annals of Applied Biology. 146:321-325. Abstract
Humphris SN, Bengough AG, Griffiths BS, Killham K, Rodger S, Stubbs V, Valentine TA, Young IM.  2005.  Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize. FEMS Microbiology Ecology. 54:123-130. Abstract
Toth IK, Birch PRJ.  2005.  Rotting softly and stealthily. Current Opinion in Plant Biology. 8:424-429.
Dyckmans J, Scrimgeour CM, Schmidt O.  2005.  A simple and rapid method for labelling earthworms with 15N and 13C. Soil Biology & Biochemistry. 37:989-993. Abstract
Stafne ET, Clark JR, Weber CA, Graham J, Lewers KS.  2005.  Simple sequence repeat (SSR) markers for genetic mapping of raspberry and blackberry. Journal of the American Society of Horticultural Science. 130:722-728. Abstract
Rostoks N, Borevitz JO, Hedley PE, Russell JR, Mudie S, Morris J, Cardle L, Marshall DF, Waugh R.  2005.  Single feature polymorphism discovery in the barley transcriptome. Genome Biology. 6:-R54. Abstract
Canto T, Palukaitis P.  2005.  Subcellular distribution of mutant movement proteins of Cucumber mosaic virus fused to green fluorescent proteins. Journal of General Virology. 86:1223-1228. Abstract
Neilson R, Boag B, Hartley G.  2005.  Temporal host-parasite relationships of the wild rabbit, Oryctolagus cuniculus (L.) as revealed by stable isotope analyses. Parasitology. 131:279-285. Abstract
Haupt S, Cowan GH, Ziegler A, Roberts AG, Oparka KJ, Torrance L.  2005.  Two plant-viral movement proteins traffic in the endocytic recycling pathway. Plant Cell. 17:164-181. Abstract
Cullen DW, Toth IK, Pitkin Y, Booham K, Walsh I, Barker I, Lees AK.  2005.  Use of quantitative molecular diagnostic assays to investigate Fusarium dry rot in potato stocks and soil. Phytopathology. 95:1462-1471. Abstract
Bradshaw JE, Ramsay G.  2005.  Utilisation of the Commonwealth Potato Collection in potato breeding. Euphytica. 146:9-19. Abstract
Hein I, Barciszewska-Pacak M, Hrubikova K, Williamson S, Dinesen M, Soenderby IE, Sundar S, Jarmolowski A, Shirasu K, Lacomme C.  2005.  Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley. Plant Physiology. 138:2155-2164. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.