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In Press
Sarkki S, Parpan T, Zahvoyska L, Voloshyna N, Derbal J, Melnykovych M, Nijnik M.  In Press.  Beyond participation! Social-ecological innovations facilitating movement from technocratic state to collaborative landscape governance in Ukraine. Landscape Ecology. Published online..
2022
2021
Barakate A, Orr J, Schreiber M, Colas I, Lewandowska D, McCallum N, Macaulay M, Morris J, Arrieta M, Hedley PE et al..  2021.  Barley anther and meiocyte transcriptome dynamics in meiotic prophase I. Frontiers in Plant Science. 11:ArticleNo.619404.
Biurrun I, Pielech R, Dembicz I, Gillet F, Kozub L, Marcenò C, Reitalu T, van Meerbeek K, Guarino R, Chytrý M et al..  2021.  Benchmarking plant diversity of Palaearctic grasslands and other open habitats. Journal of Vegetation Science. 32:ArticleNo.e13050.
Graeber D, Tenzin Y, Stutter MI, Weigelhofer G, Shatwell T, von Tümpling W, Tittel J, Wachholz A, Borchardt D.  2021.  Bioavailable DOC : reactive nutrient ratios control heterotrophic nutrient assimilation - an experimental proof of the macronutrient-imbalance hypothesis. Biogeochemistry, Published online..
Li YY, Zhang Y, Chapman SJ, Yao HY.  2021.  Biological nitrification inhibition by sorghum root exudates impacts ammonia-oxidizing bacteria but not ammonia-oxidizing archaea. Biology and Fertility of Soils. 57:399-407.
Plue J, Van Calster H, Auestad I, Basto S, Bekker RM, Bruun HH, Chevalier R, Decocq G, Grandin U, Hermy M et al..  2021.  Buffering effects of seed banks on plant community diversity in response to land use and climate. Global Ecology and Biogeography. 30:128-139.
2020
Portas TJ, Evans MJ, Spratt D, Vaz PK, Devlin JM, Barbosa AD, Wilson BA, Rypalski A, Wimpenny C, Fletcher D et al..  2020.  Baseline health and disease assessment of founder eastern quolls (Dasyurus Viverrinus) during a conservation translocation to mainland Australia. Journal of Wildlife Diseases. 56:547-559.
Smith WE, Newman KB, Mitchell L.  2020.  A Bayesian hierarchical model of postlarval delta smelt entrainment: integrating transport, length composition, and sampling efficiency in estimates of loss. Canadian Journal of Fisheries and Aquatic Sciences. 77:789-813.
Spezia L.  2020.  Bayesian variable selection in non-homogeneous hidden Markov models through an evolutionary Monte Carlo method. Computational Statistics and Data Analysis. 143:ArticleNo.UNSP106840.
Reis VM, Alves BJR, Hartmann A, James EK, Zilli JE.  2020.  Beneficial microorganisms in agriculture: the future of plant growth-promoting rhizobacteria. Plant and Soil. 451:1-3.
Pinker A, Argüelles L, Fischer A, Becker S.  2020.  Between straitjacket and possibility: Energy initiatives and the politics of regulation. Geoforum. 114:14-25.
Garcia G, Pais TF, Pinto P, Dobson G, McDougall GJ, Stewart D, Santos CN.  2020.  Bioaccessible raspberry extracts enriched in ellagitannins and ellagic acid derivatives have anti-neuroinflammatory properties. Antioxidants. 9:ArticleNo.970.
Ali S, Khan SJ, Allan R, Hashmi I.  2020.  Biocidal potential of electrochemically activated solutions (ECAS) against Aeromonas sp. Enterobacter sp. and Escherichia coli in tap water. Journal of Water Process Engineering. 36:ArticleNo.101328.
Menezes R, Foito A, Jardim C, Costa I, Garcia G, Rosado-Ramos R, Freitag S, Alexander CJ, Outeiro TF, Stewart D et al..  2020.  Bioprospection of natural sources of polyphenols with therapeutic potential for redox-related diseases. Antioxidants. 9:ArticleNo.789.
2019
Morera-Margarit P, Bulgarelli D, Pope TW, Graham RI, Mitchell C, Karley AJ.  2019.  The bacterial community associated with adult vine weevil (Otiorhynchus sulcatus) in UK populations growing on strawberry is dominated by Candidatus Nardonella. Entomologia Experimentalis et Applicata. 167:186-196.
Garcia-Gimenez G, Russell J, Aubert MK, Fincher GB, Burton RA, Waugh R, Tucker MR, Houston K.  2019.  Barley grain (1,3;1,4)-beta-glucan content: effects of transcript and sequence variation in genes encoding the corresponding synthase and endohydrolase enzymes. Scientific Reports. 9:ArticleNo.17250.
Wiegmann M, Maurer A, Pham A, March TJ, Al-Abdallat A, Thomas WTB, Bull HJ, Shahid M, Eglinton J, Baum M et al..  2019.  Barley yield formation under abiotic stress depends on the interplay between flowering time genes and environmental cues. Scientific Reports. 9:ArticleNo.6397.
Rapazote-Flores P, Bayer M, Milne L, Mayer CD, Fuller J, Guo W, Hedley PE, Morris J, Halpin C, Kam J et al..  2019.  BaRTv1.0: a barley reference transcript dataset for quantitative measurement barley transcriptomes using RNA-seq. BMC Genomics. 20:ArticleNo.968.
Lane RA, Coxon G, Freer JE, Wagener T, Johnes PJ, Bloomfield JP, Greene S, Macleod CJA, Reaney SM.  2019.  Benchmarking the predictive capability of hydrological models for river flow and flood peak predictions across a large sample of catchments in Britain. Hydrology and Earth System Sciences. 23:4011-4032.
Kpanzou TA, Gamado KM, Hounnon H.  2019.  A Beran-inspired estimator for the Weibull-type tail coefficient. Journal of Statistical Theory and Practice. 13:ArticleNo.UNSP20.
Gomes A, Oudot C, Macia A, Foito A, Carregosa D, Stewart D, van de Wiele T, Berry D, Motilva MJ, Brenner C et al..  2019.  Berry-enriched diet in salt-sensitive hypertensive rats: metabolic fate of (poly)phenols and the role of gut microbiota. Nutrients. 11:ArticleNo.2634.
Sutherland LA, Barlagne C, Barnes AP.  2019.  Beyond hobby farming: towards a typology of non-commercial farming. Agriculture and Human Values. 36:475-493.
Sarkki S, Parpan T, Melnykovych M, Zahvoyska L, Derbal J, Voloshyna N, Nijnik M.  2019.  Beyond participation! Social-ecological innovations facilitating movement from technocratic state to collaborative landscape governance in Ukraine. Landscape Ecology. 34:1601-1618.
Bennett AE, Preedy K, Golubski A, Umbanhower A, Borrett SR, Byrne L, Apostol K, Bever JD, Biederman L, Classen AT et al..  2019.  Beyond the black box: promoting mathematical collaborations for elucidating interactions in soil ecology. Ecosphere. 10:ArticleNo.e02799.
Botnen SS, Davey ML, Aas AB, Carlsen T, Thoen E, Heegaard E, Vik U, Dresch P, Mundra S, Peintner U et al..  2019.  Biogeography of plant root-associated fungal communities in the North Atlantic region mirrors climatic variability. Journal of Biogeography. 46:1532-1546.
Hopkins M, Finlayson G, Duarte C, Gibbons C, Johnstone AM, Whybrow S, Horgan GW, Blundell JE, Stubbs RJ.  2019.  Biological and psychological mediators of the relationships between fat mass, fat-free mass and energy intake. International Journal of Obesity. 43:233-242.
Holland JE, Hayes RC, Refshauge G, Poile J, Newell MT, Conyers MK.  2019.  Biomass, feed quality, mineral concentration and grain yield responses to potassium fertiliser of dual-purpose crops. New Zealand Journal of Agricultural Research. 62:476-494.
Figueira I, Tavares L, Jardim C, Costa I, Terrasso AP, Almeida AF, Govers CCFM, Mes JJ, Gardner R, Becker JD et al..  2019.  Blood-brain barrier permeability and neuroprotective potential of blackberry-digested polyphenols. European Journal of Nutrition. 58:113-130.
Guerrero-Jiménez G, Vannucchi PE, Silva-Briano M, Adabache-Ortiz A, Rico-Martínez R, Roberts D, Neilson R, Elías-Gutiérrez M.  2019.  Brachionus paranguensis sp. nov. (Rotifera, Monogononta), a member of the L group of the Brachionus plicatilis complex. ZooKeys. 880:1-23.
Abbeloos R, Backlund JE, Basterrechea Salido M, Bauchet G, Benites-Alfaro O, Birkett C, Calaminos VC, Carceller P, Cornut G, Costa BV et al..  2019.  BrAPI - an Application Programming Interface for plant breeding applications. Bioinformatics. :ArticleNo.btz190.
Campos P, Caparros A, Oviedo JL, Ovando P, Alvarez-Farizo B, Diaz-Balteiro L, Carranza J, Begueria S, Diaz M, Herruzo AC et al..  2019.  Bridging the gap between national and ecosystem accounting application in Andalusian Forests, Spain. Ecological Economics. 157:218-236.
Henry MK, McCann CM, Evans J, Webster C, McKendrick IJ, Morgan M, Willett A, Reeves A, Humphry RW, Gally DL et al..  2019.  The British Escherichia coli 0157 in cattle study (BECS) : prevalence and factors associated with occurrence in British cattle populations. Cattle Practice. 27:109.
2018
Dudnik A, Almeida AF, Andrade R, Avila B, Banados P, Bassard JE, Benkoulouche M, Bott M, Braga A, Breitel D et al..  2018.  BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
Dudnik A, Almeida AF, Andrade R, Avila B, Banados P, Bassard JE, Benkoulouche M, Bott M, Braga A, Breitel D et al..  2018.  BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
Stutter MI, Graeber D, Evans CD, Wade AJ, Withers PJA.  2018.  Balancing macronutrient stoichiometry to alleviate eutrophication. Science of the Total Environment. 634:439-447.
Hérivaux C, Rey-Valette H, Rulleau B, Agenais AL, Grisel M, Kuhfuss L, Maton L, Vinchon C.  2018.  Benefits of adapting to sea level rise: the importance of ecosystem services in the French Mediterranean sandy coastline. Regional Environmental Change. 18:1815-1828.
Grüning B, Dale R, Sjödin A, Chapman BA, Rowe J, Tomkins-Tinch CH, Valieris R, Caprez A, Batut B, Haudgaard M et al..  2018.  Bioconda: A sustainable and comprehensive software distribution for the life sciences. Nature Methods. 15:475-476.
Primack RB, Miller-Rushing AJ, Corlett RT, Devictor V, Johns DM, Loyola R, Maas B, Pakeman RJ, Pejchar L.  2018.  Biodiversity gains? The debate on changes in local- vs global-scale species richness Biological Conservation. 219:A1-A3.
Ahmad Z, Imran M, Qadeer S, Hussain S, Kausar R, Dawson LA, Khalid A.  2018.  Biosurfactants for sustainable soil management. Advances in Agronomy.. 150:81-130.
Raven J.  2018.  Blue carbon: past, present and future, with emphasis on macroalgae. Biology Letters. 14:ArticleNo.20180336.
Silva VC, Alves PAC, Rhem MFK, dos Santos JMF, James EK, Gross E.  2018.  Brazilian species of Calliandra Benth. (tribe Ingeae) are nodulated by diverse strains of Paraburkholderia. Systematic and Applied Microbiology. 41:241-250.
2017
Bull H, Casao MC, Zwirek M, Flavell AJ, Thomas WTB, Guo WB, Zhang RX, Rapazote-Flores P, Kyriakidis S, Russell J et al..  2017.  Barley SIX-ROWED SPIKE3 encodes a putative Jumonji C-type H3K9me2/me3 demethylase that represses lateral spikelet fertility. Nature Communications. 8:ArticleNo.936.
Escudero-Martinez CM, Morris JA, Hedley PE, Bos JIB.  2017.  Barley transcriptome analyses upon interaction with different aphid species identify thionins contributing to resistance. Plant Cell and Environment. 40:2628-2643.
Gbegbelegbe S, Cammarano D, Asseng S, Robertson R, Chung U, Adam M, Abdalla O, Payne T, Reynolds M, Sonder K et al..  2017.  Baseline simulation for global wheat production with CIMMYT mega-environment specific cultivars. Field Crops Research. 202:122-135.
Garcia G, Nanni S, Figueira I, Ivanov I, McDougall GJ, Stewart D, Ferreira RB, Pinto P, Silva RFM, Brites D et al..  2017.  Bioaccessible (poly)phenol metabolites from raspberry protect neural cells from oxidative stress and attenuate microglia activation. Food Chemistry. 215:274-283.
Jamieson AJ, Malkocs T, Piertney SB, Fujii T, Zhang ZL.  2017.  Bioaccumulation of persistent organic pollutants in the deepest ocean fauna. Nature Ecology and Evolution. 1:ArticleNo.0051.
Goszcz K, Duthie GG, Stewart D, Leslie SJ, Megson IL.  2017.  Bioactive polyphenols and cardiovascular disease: chemical antagonists, pharmacological agents or xenobiotics that drive an adaptive response? British Journal of Clinical Pharmacology. Published online..
Goszcz K, Duthie GG, Stewart D, Leslie SJ, Megson IL.  2017.  Bioactive polyphenols and cardiovascular disease: chemical antagonists, pharmacological agents or xenobiotics that drive an adaptive response? British Journal of Clinical Pharmacology. 174:1209-1225.
Goszcz K, Deakin SJ, Duthie GG, Stewart D, Megson IL.  2017.  Bioavailable concentrations of delphinidin and its metabolite, gallic acid, induce antioxidant protection associated with increased intracellular glutathione in cultured endothelial cells. Oxidative Medicine and Cellular Longevity. :ArticleNo.9260701.
White PJ, Thompson JA, Wright G, Rasmussen SK.  2017.  Biofortifying Scottish potatoes with zinc. Plant and Soil. 411:151-165.
Sprent JI, Ardley J, James EK.  2017.  Biogeography of nodulated legumes and their nitrogen fixing symbionts - Tansley review. New Phytologist. 215:40-56.
Wang XH, Long Y, Wang N, Zou J, Ding GD, Broadley MR, White PJ, Yuan P, Zhang QW, Luo ZL et al..  2017.  Breeding histories and selection criteria for oilseed rape in Europe and China identified by genome wide pedigree dissection. Scientific Reports. 7:ArticleNo.1916.
Henry MK, Tongue SC, Evans J, Webster C, McKendrick IJ, Morgan M, Willett A, Reeves A, Humphry RW, Gally DL et al..  2017.  British Escherichia coli O157 in Cattle Study (BECS): to determine the prevalence of E-coli O157 in herds with cattle destined for the food chain. Epidemiology and Infection. 145:3168-3179.
Orosa B, He Q, Mesmar J, Gilroy EM, McLellan H, Yang CW, Craig A, Bailey M, Zhang CJ, Moore JD et al..  2017.  BTB-BACK domain protein POB1 suppresses immune cell death by targeting ubiquitin E3 ligase PUB17 for degradation. PLoS Genetics. 13:e1006540.
2016
Mwafulirwa L, Baggs EM, Russell J, George T, Morley N, Sim A, De la Fuente Canto C, Paterson E.  2016.  Barley genotype influences stabilization of rhizodeposition-derived C and soil organic matter mineralization. Soil Biology and Biochemistry. 95:60-69.
Cruz J, Sarmento P, Rydevik G, Rebelo H, White PCL.  2016.  Bats like vintage: managing exotic eucalypt plantations for bat conservation in a Mediterranean landscape. Animal Conservation. 19:53-64.
Thomsen NI, Binning PJ, McKnight US, Tuxen N, Bjerg PL, Troldborg M.  2016.  A Bayesian belief network approach for assessing uncertainty in conceptual site models at contaminated sites. Journal of Contaminant Hydrology. 188:12-28.
Loe LE, Hansen BB, Stien A, Albon SD, Bischof R, Carlsson A, Irvine RJ, Meland M, Rivrud IM, Ropstad E et al..  2016.  Behavioral buffering of extreme weather events in a high- Arctic herbivore. Ecosphere. 7:1-13.
Loe LE, Hansen BB, Stien A, Albon SD, Bischof R, Carlsson A, Irvine RJ, Meland M, Rivrud IM, Ropstad E et al..  2016.  Behavioral buffering of extreme weather events in a high- Arctic herbivore. Ecosphere. 7:ArticleNo.e01374..
Sarkki S, Ficko AJ, Grunewald K, Nijnik M.  2016.  Benefits from and threats to European treeline ecosystem services: an exploratory study of stakeholders and governance. Regional Environmental Change. 16:2019-2032.
Hannam KD, Kehila D, Millard P, Midwood AJ, Neilsen D, Neilsen GH, Forge TA, Nichol C, Jones MD.  2016.  Bicarbonates in irrigation water contribute to carbonate formation and CO2 production in orchard soils under drip irrigation. Geoderma. 266:120-126.
Lemaire B, Chimphango S, Stirton C, Rafundeen S, Honnay O, Smets E, Chen WM, Sprent JI, James EK, Muasya AM.  2016.  Biogeographical patterns of legume-nodulating Burkholderia spp.: from African Fynbos to continental scales. Applied and Environmental Microbiology. 82:5099-5115.
Liu HT, White PJ, Li CJ.  2016.  Biomass partitioning and rhizosphere responses of maize and faba bean to phosphorus deficiency. Crop and Pasture Science. 67:847-856.
Howland BWA, Stojanovic D, Gordon IJ, Radford J, Manning AD, Lindenmayer DB.  2016.  Birds of a feather flock together: Using trait-groups to understand the effect of macropod grazing on birds in grassy habitats. Biological Conservation. 194:89-99.
Howland BWA, Stojanovic D, Gordon IJ, Radford J, Manning AD, Lindenmayer DB.  2016.  Birds of a feather flock together: using trait-groups to understand the effect of macropod grazing on birds in grassy habitats. Biological Conservation. 194:89-99.
Flanigan S, Sutherland LA.  2016.  Buying access to social capital? From collaboration to service provision in an agricultural co-operative Sociologia Ruralis. 56:471-490.
2015
Rossez Y, Wolfson EB, Holmes A, Gally DL, Holden NJ.  2015.  Bacterial flagella: twist and stick, or dodge across the Kingdoms. PLoS Pathogens.. 11:e1004483.
Dawson IK, Russell J, Powell W, Steffenson B, Thomas WTB, Waugh R.  2015.  Barley: a translational model for adaptation to climate change. New Phytologist. 206:913-931.
Martin-Fernandez JA, Hron K, Templ M, Filzmoser P, Palarea-Albaladejo J.  2015.  Bayesian-multiplicative treatment of count zeros in compositional data sets. Central European Journal of Biology. 15:134-158.
Sarkki S, Ficko AJ, Grunewald K, Nijnik M.  2015.  Benefits from and threats to European treeline ecosystem services: an exploratory study of stakeholders and governance. Regional Environmental Change. Published online.
Puga AP, Abreu CA, Melo LCA, Beesley L.  2015.  Biochar application to a contaminated soil reduces the availability and plant uptake of zinc, lead and cadmium. Journal of Environmental Management. 159:86-93.
Evans DM, Altwegg R, Garner TWJ, Gompper ME, Gordon IJ, Johnson JA, Pettorelli N.  2015.  Biodiversity offsetting: what are the challenges, opportunities and research priorities for animal conservation? Animal Conservation. 18:1-3.
Harrison K, Hoad G, Scott P, Simpson L, Horgan GW, Smyth E, Heys SD, Haggarty P.  2015.  Breast cancer risk and imprinting methylation in blood. Clinical Epigenetics. 7:ArticleNo.92.
Sheu SY, Chen MH, Liu WYY, Andrews M, James EK, Ardley JK, De Meyer SE, James TK, Howieson JG, Coutinho BG et al..  2015.  Burkholderia dipogonis sp. Nov., isolated from root nodules of Dipogon lignosus in New Zealand and Western Australia. International Journal of Systematic and Evolutionary Microbiology. 65:4716-4723.
Flanigan S, Sutherland LA.  2015.  Buying access to social capital? From collaboration to service provision in an agricultural co-operative Sociologia Ruralis. Published online.
2014
Schreiber M, Wright F, MacKenzie K, Hedley PE, Schwerdt JG, Little A, Burton RA, Fincher GB, Marshall D, Waugh R et al..  2014.  The barley genome sequence assembly reveals three additional members of the CsIF (1,3;1,4) - beta-glucan synthase gene family. PLoS ONE. 9:e90888.
Mendiondo GM, Medhurst A, van Roermund CW, Zhang XB, Devonshire J, Scholefield D, Fernandez J, Axcell B, Ramsay L, Waterham HR et al..  2014.  Barley has two peroxisomal ABC transporters with multiple functions in beta-oxidation. Journal of Experimental Botany. 65:4833-4847.
Martin-Fernandez JA, Hron K, Templ M, Filzmoser P, Palarea-Albaladejo J.  2014.  Bayesian-multiplicative treatment of count zeros in compositional data sets. Central European Journal of Biology. 15:134-158.
Banwart S, Black HIJ, Cai ZC, Gicheru P, Joosten H, Victoria R, Milne E, Noellemeyer E, Pascual U, Nziguheba G et al..  2014.  Benefits of soil carbon: report on the outcomes of an international scientific committee on problems of the environment rapid assessment workshop. Carbon Management. 5:185-192.
Bourne EC, Bocedi G, Travis JMJ, Pakeman RJ, Brooker R, Schiffers K.  2014.  Between migration load and evolutionary rescue: dispersal, adaptation and the response of spatially structured populations to environmental change. Proceedings of the Royal Society Series B. 281:1471-2954.
Sutherland LA, Matthews KB, Buchan K, Miller D.  2014.  Beyond crofting: Assessing change on Scotland's small-scale holdings. Scottish Geographical Journal. 130:223-242.
Hough RL.  2014.  Biodiversity and human health: evidence for casuality? Biodiversity and Conservation. 23:267-288.
Tumwesige V, Fulford D, Davidson GC.  2014.  Biogas appliances in Sub-Sahara Africa. Biomass and Bioenergy. 70:40-50.
Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y et al..  2014.  BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains. Journal of Biomedical Semantics. 5
Makarov VV, Makarova SS, Love AJ, Sinitsyna OV, Dudnik A, Yaminsky I, Taliansky ME, Kalinina NO.  2014.  Biosynthesis of stable iron nanoparticles in aqueous extracts of Hordeum vulgare and Rumex acetosa plants. Langmuir. 30:5982-5988.
Palarea-Albaladejo J, Martin-Fernandez JA, Olea RA.  2014.  A bootstrap estimation scheme for chemical compositional data with nondetects. Journal of Chemometrics. 28:585-599.
Liu WYY, Ridgway HJ, James TK, James EK, Chen WM, Sprent JI, Young JPW, Andrews M.  2014.  Burkholderia sp. induces functional nodules on the South African invasive legume Dipogon lignosus (Phaseoleae) in New Zealand soils. Microbial Ecology. 68:542-555.
2013
Giaramida L, Manage PM, Edwards C, Singh BK, Lawton LA.  2013.  Bacterial communities' response to microcystins exposure and nutrient availability: Linking degradation capacity to community structure. International Biodeterioration and Biodegradation. 84:111-117.
Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M et al..  2013.  Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. Plant Journal. 76:494-505.
Seim GL, Ahn CI, Bodis MS, Luwedde F, Miller DD, Hillier S, Tako E, Glahn RP, Young SL.  2013.  Bioavailability of iron in geophagic earths and clay minerals, and their effect on dietary iron absorption using an in vitro digestion/Caco-2 cell model. Food and Function. 4:1263-1270.
Beesley L, Marmiroli M, Pagaono L, Pigoni V, Fellet G, Fresno T, Vamerali T, Bandiera M, Marmiroli N.  2013.  Biochar addition to an arsenic contaminated soil increases arsenic concentrations in the pore water but reduces uptake to tomato plants (Solanum lycopersicum L.). Science of the Total Environment. 454-455:598-603.
Stutter MI, Richards S, Dawson JJC.  2013.  Biodegradability of natural dissolved organic matter collected from a UK moorland stream. Water Research. 47:1169-1180.
Loades KW, Bengough AG, Bransby MF, Hallett PD.  2013.  Biomechanics of nodal, seminal and lateral roots of barley: effects of diameter, waterlogging and mechanical impedance. Plant and Soil. 370:407-418.
Hallett PD, Karim KH, Bengough AG, Otten W.  2013.  Biophysics of the Vadose Zone: from reality to model systems and back again. Vadose Zone Journal. 12
Steele K, Dickin E, Keerio MD, Samad S, Kambona C, Brook R, Thomas W, Frost G.  2013.  Breeding low-glycemic index barley for functional food. Field Crops Research. 154:31-39.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, dos Reis Jr FB, Melkonian RJ, Moulin L, James EK, Sprent JI et al..  2013.  Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp. International Journal of Systematic and Applied Microbiology. 63:435-441.
Bournaud C, de Faria S, Santos JMF, Tisseyre P, Silva M, Chaintreuil C, Gross E, James EK, Prin Y, Moulin L.  2013.  Burkholderia species are the most common and preferred nodulating symbionts of the Piptadenia group (Tribe Mimoseae). PLoS ONE. 8:e63478.
2012
Thomas CR, Gordon IJ, Wooldridge S, Marshall P.  2012.  Balancing the trade-offs between ecological and economic risks in the Great Barrier Reef: a pragmatic conceptual framework. Human and Ecological Risk Assessment.. 18:69-91.
Martin-Ortega J, Brouwer R, Ojea E, Berbel J.  2012.  Benefit transfer and spatial heterogeneity of preferences for water quality improvements. Journal of Environmental Management. 106:22-29.
Boath AS, Grussu D, Stewart D, McDougall GJ.  2012.  Berry polyphenols inhibit digestive enzymes: a source of potential health benefits? Food Digestion. 3:1-7.
White PJ, Broadley MR, Hammond JP, Ramsay G, Subramanian NK, Thompson JA, Wright GM.  2012.  Bio-fortification of potato tubers using foliar zinc-fertiliser. Journal of Horticultural Science and Biotechnology. 87:123-129.
Talevich E, Invergo BM, Cock PJA, Chapman BA.  2012.  Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biophyton. BMC Bioinformatics. 13:209.
Dawson JJC, Adhikari YR, Soulsby C, Stutter MI.  2012.  The biogeochemical reactivity of suspended particulate matter at nested sites in the Dee basin, NE Scotland. Science of the Total Environment. 434:159-170.
Griffiths BS, Daniell TJ, Donn S, Neilson R.  2012.  Bioindication potential of using molecular characterisation of the nematode community: response to soil tillage. European Journal of Soil Biology. 49:92-97.
Blok VC, Phillips MS.  2012.  Biological characterisation of Globodera pallida from Idaho. Nematology. 14:817-826.
Subbarao GV, Sahrawat KL, Nakahara K, Ishikawa T, Rao GP, Hash CT, George TS, Kishii M, Rao PS, Nardi P et al..  2012.  Biological nitrification inhibition (BNI) - a novel strategy to regulate nitrification in agricultural systems. Advances in Agronomy. 114:249-302.
Chen WM, Prell J, James EK, Sheu D, Sheu S.  2012.  Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica. Microbiology. 158:1758-1766.
Ross L, Woodin S, Hester AJ, Thompson DBA, Birks HJ.  2012.  Biotic homogenization of upland vegetation: patterns and drivers at multiple spatial scales over five decades. Journal of Vegetation Science. 23:755-770.
Linder HP, Bykova O, Dyke J, Etienne RS, Hickler T, Kuehn I, Marion G, Ohlemueller R, Schymanski SJ, Singer A.  2012.  Biotic modifiers, environmental modulation and species distribution models. Journal of Biogeography. 39:2179-2190.
Wei Z, Hillier S, Gadd GM.  2012.  Biotransformation of manganese oxides by fungi: solubilization and production of manganese oxalate biominerals. Environmental Microbiology. 14:1744-1752.
Liu XY, Wei S, Wang F, James EK, Zagar C, Wang YP, Dong X, Hui T, Xia LG.  2012.  Burkholderia and Cupriavidus spp. are the preferred symbionts of Mimosa spp. in Southern China. FEMS Microbiology Ecology. 80:417-426.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, James EK, Sprent JI, Young JPW, Chen WM.  2012.  Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
2011
Buttoud G, Kouplevatskaya-Buttoud I, Slee B, Weiss G.  2011.  Barriers to institutional learning and innovations in the forest sector in Europe: Markets, policies and stakeholders. Forest Policy and Economics. 13:124-131.
Lawson DJ, Holtrop G, Flint H.  2011.  Bayesian analysis of non-linear differential equation models with application to a gut microbial ecosystem. Biometrical Journal. 53:543-556.
Cornulier T, Robinson RA, Elston DA, Lambin X, Sutherland WJ, Benton T.  2011.  Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution. 2:86-94.
Horgan GW.  2011.  The behaviour of a neutral model of weight regulated only by body mass. Journal of Theoretical Biology. 270:1-6.
Grussu D, Stewart D, McDougall GJ.  2011.  Berry polyphenols inhibit a-amylase in vitro: Identifying active components in rowanberry and raspberry. Journal of Agricultural and Food Chemistry. 59:2324-2331.
Prior GL, Evans DM, Thirgood SJ, Redpath S, Monaghan P.  2011.  Birds bias offspring sex ratio in response to livestock grazing. Biology Letters. 7:958-960.
Dolan A, MacFarlane SA, McGavin WJ, Brennan RM, McNicol JW.  2011.  Blackcurrant reversion virus: validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants. Journal of Berry Research. 1:201-208.
Xin GS, Long RJ, Guo XS, Irvine RJ, Ding LM, Ding LL, Shang ZH.  2011.  Blood mineral status of grazing Tibetan sheep in the Northeast of the Qinghai-Tibetan Plateau. Livestock Science. 136:102-107.
Palacio S, Paterson E, Sim A, Hester AJ, Millard P.  2011.  Browsing affects intra-ring carbon allocation in species with contrasting wood anatomy. Tree Physiology. 31:150-159.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2011.  Browsing interacts with climate to determine tree-ring increment. Functional Ecology. 25:1018-1023.
2010
Karunakaran R, Haag AF, East AK, Ramachandran VK, Prell J, James EK, Scocchi M, Ferguson GP, Poole PS.  2010.  BacA is essential for bacteroid development in nodules of galegoid, but not phaseoloid, legumes. Journal of Bacteriology. 192:2920-2928.
Eichmann R, Bischof M, Weis C, Shaw J, Lacomme C, Schweizer P, Duchkov D, Hensel G, Kumlehn J, H R.  2010.  BAX INHIBITOR-1 is required for full susceptibility of barley to powdery mildew. Molecular Plant-Microbe Interactions. 23:1217-1227.
Spezia L.  2010.  Bayesian analysis of multivariate Gaussian hidden Markov models with an unknown number of regimes. Journal of Time Series Analysis. 31:1-11.
Johnson SN, Hallett PD, Gillespie TL, Halpin C.  2010.  Below-ground herbivory and root toughness: a potential model system using lignin-modified tobacco. Physiological Entomology. 35:186-191. Abstract
Whitson J, McDougall GJ, Ross HA, Lund VA, Hamilton CA, Dominiczak AF, Stewart D.  2010.  Bioactive berry components: Potential modulators of health benefits. Functional Plant Science and Biotechnology. 4:34-38.
Hallett PD, Lichner L, Cerda A.  2010.  Biohydrology: coupling biology and soil hydrology from pores to landscapes preface. Ecohydrology. 3:379-381.
Duthie SJ, Horgan GW, de Roos B, Rucklidge GJ, Reid M, Duncan G, Pirie L, Basten GP, Powers HJ.  2010.  Blood folate status and expression of proteins involved in immune function, inflammation and coagulation: Biochemical and proteomic changes in the plasma of humans in response to long-term synthetic folic acid supplementation. Journal of Proteome Research. 9:1941-1950.
Love CG, Graham NS, O'Lochlainn S, Bowen HC, May ST, White PJ, Broadley MR, Hammond JP, King GJ.  2010.  A Brassica exon array for whole-transcript gene expression profiling. PLoS One. 5:-e12812.
Pacak A, Strozycki PM, Barciszewska-Pacak M, Alejska M, Lacomme C, Jarmolowski A, Szweykowska-Kulinska Z, Figlerowicz M.  2010.  The brome mosaic virus-based recombination vector triggers a limited gene silencing response depending on the orientation of the inserted sequence. Archives of Virology. 155:169-179.
Bontemps C, Elliott GN, Simon MF, Dos Reis J FB, Gross E, Lawton RC, Neto NE, Loureiro MdeF, de Faria SM, Sprent JI et al..  2010.  Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
Gallego-Sala AV, Clark JM, House JI, Orr HG, Prentice IC, Smith P, Farewell T, Chapman SJ.  2010.  Bioclimatic envelope model of climate change impacts on blanket peatland distribution in Great Britain. Climate Research. 45:151-162.
Bontemps C, Elliott GN, Simon MF, dos, Reis J, F.B, Gross E, Neto NE, de Loureiro MF, de Faria SM, Sprent JI et al..  2010.  Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19(1):44-52.
2009
Antunez-Lamas M, Cabrera E, Lopez-Solanilla E, Solano R, Gonzalez-Melendi P, Chico JM, Toth IK, Birch PRJ, Pritchard L, Liu H et al..  2009.  Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues. Molecular Microbiology. 74:662-671.
Lewis FI, Gunn GJ, McKendrick IJ, Murray FM.  2009.  Bayesian inference for within-herd prevalence of Leptospira interrogans serovar Hardjo using bulk milk antibody testing. Biostatistics. 10:719-728.
McDougall GJ, Kulkarni NN, Stewart D.  2009.  Berry polyphenols inhbit pancreatic lipase actvity in vitro. Food Chemistry. 115:193-199. Abstract
Bowen SR, Gregorich EG, Hopkins DW.  2009.  Biochemical properties and biodegradation of dissolved organic matter from soils. Biology and Fertility of Soils. 45:733-742. Abstract
Woodward FI, Bardgett RD, Raven JA, Hetherington AM.  2009.  Biological approaches to global environmental change: mitigation and remediation. Current Biology. 19:R615-R623.
Subbarao GV, Kishii M, Nakahara K, Ishikawa T, Ban T, Tsujimoto H, George TS, Berry WL, Hash CT, Ito O.  2009.  Biological nitrification inhibition (BNI) - Is there potential for genetic interventions in Triticeae? Breeding Science. 59:529-545.
Cock PJA, Antao T, Chang JT, Chapman BA, Cox CJ, Dalko A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B et al..  2009.  Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.
Harrison BD.  2009.  A brief outline of the development of plant virology in the 20th century. Journal of Plant Pathology. 91:509-520.
Mickleburgh S, Waylen K, Racey P.  2009.  Bats as bushmeat: a global review. Oryx. 43(2):217-234.
Blackstock KL.  2009.  Between a rock and a hard place: incompatible objectives at the heart of river basin planning? Water Science and Technology. 59(3):425-431.
Britton AJ, Beale CM, Towers W, Hewison RL.  2009.  Biodiversity gains and losses: evidence for homogenisation of Scottish alpine vegetation. Biological Conservation. 142:1728-1739.
Elliott GN, Chou JH, Chen WM, Bloemberg GV, Bontemps C, Martinez-Romero E, Velazquez E, Young JPW, Sprent JI, James EK.  2009.  Burkholderia spp. are the most competitive symbionts of Mimosa, particularly under N-limited conditions. Environmental Microbiology. 11(4):762-778.
2008
Pswarayi A, van Eeuwijk FA, Ceccarelli S, Grando S, Comadran J, Russell JR, Francia E, Pecchioni N, Li Destri O, Akar T et al..  2008.  Barley adaptation and improvement in the Mediterranean basin. Plant Breeding. 127:554-560.
McDougall GJ, Ross HA, Ikeji M, Stewart D.  2008.  Berry extracts exert different antiproliferative effects against cervical and colon cancer cells grown in vitro. Journal of Agricultural and Food Chemistry. 56:3016-3023. Abstract
Cameron AR, Anton S, Melville L, Houston NP, Dayal S, McDougall GJ, Stewart D, Rena G.  2008.  Black tea polyphenols mimic insulin/insulin-like growth factor-1 signalling to the longevity factor FOXO1a. Aging Cell. 7:69-77. Abstract
Hallett PD.  2008.  A brief overview of the causes, impacts and amelioration of soil water repellency - a Review. Soil and Water Research. 3:S21-S29.
Jones JT, Moens M, Mota M, Li HM, Kikuchi T.  2008.  Bursaphelenchus xylophilus: opportunities in comparative genomics and molecular host-parasite interactions (Review). Molecular Plant Pathology. 9:357-368. Abstract
Izumi H, Cairney JWG, Killham K, Moore ERB, Alexander IJ, Anderson IC.  2008.  Bacteria associated with ectomycorrhizas of slash pine (Pinus elliottii) in south eastern Queensland, Australia. FEMS Microbiology Letters. 282(2):196-204.
Palacio S, Hester AJ, Maestro M, Millard P.  2008.  Browsed Betula pubescens trees are not carbon-limited. Functional Ecology. 22(5):808-815.
Breen C, Clegg F, Herron MM, Hild GP, Hillier S, Hughes TL, Jones TGJ, Matteson A, Yarwood J.  2008.  Bulk mineralogical characterisation of oilfield reservoir rocks and sandstones using diffuse reflectance infrared fourier transform spectroscopy and partial least squares analysis. Journal of Petroleum Science and Engineering. 60(1):1-17.
Chen WM, de Faria SM, Chou JH, James EK, Elliott GN, Sprent JI, Bontemps C, Young JPW, Vandamme P.  2008.  Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia. International Journal of Systematic and Evolutionary Microbiology. 58(9):2174-2179.
2007
Ravensdale M, Blom TJ, Gracia-Garza JA, Svircev AM, Smith RJ.  2007.  Bacteriophages and the control of Erwinia carotovora subsp. carotovora. Canadian Journal of Plant Pathology. 29:121-130.
Forster BP, Franckowiak JD, Lundqvist U, Lyon J, Pitkethly I, Thomas WTB.  2007.  The barley phytomer. Annals of Botany. 100:725-733. Abstract
Hukkanen AT, Kokko HI, Buchala AJ, McDougall GJ, Stewart D, K SO, Karjalainen RO.  2007.  Benzothiadiazole induces the accumulation of phenolics and improves resistance to powdery mildew in strawberries. Journal of Agricultural and Food Chemistry. 55:1862-1870. Abstract
Sayanova O, Haslam R, Guschina I, Lloyd D, Christie WW, Harwood JL, Napier JA.  2007.  A bifunctional D12, D15-desaturase from Acanthamoeba castellanii directs the synthesis of highly unusual n-1 series unsaturated fatty acids. Journal of Biological Chemistry. 281:36533-36541. Abstract
Kuan HL, Hallett PD, Griffiths BS, Gregory AS, Watts CW, Whitmore AP.  2007.  The biological and physical stability and resilience of a selection of Scottish soils to stresses. European Journal of Soil Science. 58:811-821. Abstract
Williamson B, Tudzynski B, Tudzynski P, Van Kan JAL.  2007.  Botrytis cinerea: the cause of grey mould disease. Molecular Plant Pathology. 8:561-580. Abstract
Anderson IC, Bastias BA, Genney DR, Parkin PI, Cairney JWG.  2007.  Basidiomycete fungal communities in Australia sclerophyll forest soil are altered by repeated prescribed burning. Mycological Research. 111(4):482-486.
Singh BK, Tate KR.  2007.  Biochemical and molecular characterisation of methanotrophs in soil from a pristine New Zealand beech forest. FEMS Microbiology Letters. 275(1):89-97.
2006
Mao X, Hu F, Griffiths BS, Li H.  2006.  Bacterial-feeding nematodes enhance root growth of tomato seedlings. Soil Biology & Biochemistry. 38:1615-1622. Abstract
Rostoks N, Schmierer D, Mudie S, Drader T, Brueggeman R, Caldwell DG, Waugh R, Kleinhofs A.  2006.  Barley necrotic locus nec1 encodes the cyclic nucleotide-gated ion channel 4 homologous to the Arabidopsis HLM1. Molecular Genetics and Genomics. 275:159-168. Abstract
Hamza O, Bengough AG, Bransby MF, Davies MCR, Hallett PD.  2006.  Biomechanics of plant roots: estimating localised deformation with particle image velocimetry. Biosystems Engineering. 94:119-132. Abstract
Iason GR, Villalba JJ.  2006.  Behavioral strategies of mammal herbivores against plant secondary metabolites: the avoidance-tolerance continuum. Journal of Chemical Ecology. 32(6):1115-1132.
Dunn SM, Dilks CF.  2006.  Benchmark models for diffuse pollution : the challenges. Archiv fur Hydrobiologie, Large Rivers Suppl.17. 161:49-73.
Singh BK, Walker A, Wright DJ.  2006.  Bioremedial potential of fenamiphos and chlorpyrifos degrading isolates: influence of different environmental conditions. Soil Biology and Biochemistry. 38(9):2682-2693.
Keith AM, van der Wal R, Brooker RW, Osler GHR, Chapman SJ, Burslem DFRP.  2006.  Birch invasion of heather moorland increases nematode diversity and trophic complexity. Soil Biology and Biochemistry. 38(12):3421-3430.
Hutchins M, Urama K, Penning E, Icke J, Dilks C, Bakken T, Perrin C, Saloranta T, Candela L.  2006.  The BMW model evaluation tool: a guidance document. Archiv fur Hydrologie: Large Rivers Supplement. 17:23-48.
2005
Swanston JS, Newton AC, Hoad SP, Spoor W.  2005.  Barleys grown as cultivar mixtures compared with blends made before and after malting, for effects on malting performance. Journal of the Institute of Brewing. 111:144-152. Abstract
Griffiths BS, Hallett PD, Kuan HL, Pitkin Y, Aitken MN.  2005.  Biological and physical resilience of soil amended with heavy metal-contaminated sewage sludge. European Journal of Soil Science. 56:197-206. Abstract
Hetherington AM, Raven JA.  2005.  The biology of carbon dioxide. Current Biology. 15:406-410.
Hancock RD, Viola R.  2005.  Biosynthesis and catabolism of L-ascorbic acid in plants. Critical Reviews in Plant Sciences. 24:167-188. Abstract
Kumar PL, Latha TKS, Kulkarni NK, Raghavendra N, Saxena KB, Waliyar F, Rangaswamy KT, Muniyappa V, Doriswamy S, Jones AT.  2005.  Broad-based resistance to pigeonpea sterility mosaic disease in wild relatives of pigeonpea (Cajanus: Phaseoleae). Annals of Applied Biology. 146:371-379. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.