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2015
Brown I, Castellazzi M.  2015.  Changes in climate variability with reference to land quality and agriculture in Scotland. International Journal of Biometeorology. 59:717-732.
Jones HG, Gordon SL, Brennan RM.  2015.  Chilling requirement of Ribes cultivars. Frontiers in Plant Science. 5
Baker K, Dhillon T, Colas I, Cook N, Milne I, Milne L, Bayer M, Flavell AJ.  2015.  Chromatin state analysis of the barley epigenome reveals a higher-order structure defined by H3K27me1 and H3K27me3 abundance. Plant Journal. 84:111-124.
Chapman JA, Mascher M, Buluc A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Seghal S, Oliker L et al..  2015.  Chromosome-scale assembly of the hexaploid wheat genome from whole genome shotgun sequencing. Genome Biology. 16
Wilkinson ME, Mackay E, Quinn PF, Stutter MI, Beven KJ, Macleod CJA, Macklin MG, Elkhatib Y, Percy B, Vitolo C et al..  2015.  A cloud based tool for knowledge exchange on local scale flood risk. Journal of Environmental Management. 161:38-50.
Smith SW, Johnson D, Quin SLO, Munro K, Pakeman RJ, van der Wal R, Woodin SJ.  2015.  Combination of herbivore removal and nitrogen deposition increases upland carbon storage. Global Change Biology.. 21:3036-3048.
Raven JA.  2015.  Compartmentation of defensive compound synthesis in a red alga. Journal of Phycology. 51:222-224.
Lee JS, Filatova T, Ligmann-Zielinska A, Hassani-Mahmooei B, Stonedahl F, Lorscheid I, Voinov A, Polhill JG, Sun Z, Parker DC.  2015.  The complexities of agent-based modeling output analysis. Journal of Artificial Societies and Social Simulation. 18:ArticleNo.4.
Sutherland LA, Peter S, Zagata L.  2015.  Conceptualising multi-regime interactions: the role of the agriculture sector in renewable energy transitions. Research Policy. 44:1543-1554.
Speed JDM, Martinsen V, Hester AJ, Holand O, Mulder MJA, Austrheim G.  2015.  Continuous and discontinuous variation in ecosystem carbon stocks with elevation across a treeline ecotone. Biogeosciences. 12:1615-1627.
Richards S, Paterson E, Withers PJA, Stutter MI.  2015.  The contribution of household chemicals to environmental discharges via effluents: Combining chemical and behavioural data. Journal of Environmental Management. 150:427-434.
Van Straaten O, Corre MD, Wolf K, Tchienkoua M, Cuellar E, Matthews RB, Veldkamp E.  2015.  Conversion of lowland tropical forests to tree cash crop plantations loses up to one-half of stored soil organic carbon. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112:9956-9960.
Obidiegwu JE, Bryan GJ, Jones HG, Prashar A.  2015.  Coping with drought: stress and adaptive responses in potato and perspectives for improvement. Frontiers in Plant Science. 6:ArticleNo.542.
Hagemann N, Prager K, Bartke S.  2015.  Costs of implementing agricultural soil protection policies - insights from two German cases. Journal of Environmental Policy and Planning. 17:656-672.
Edwards D, Cherns L, Raven JA.  2015.  Could land-based early photosynthesizing ecosystems have bioengineered the planet in mid-Palaeozoic times? Palaeontology. 58:803-837.
Slee B, Hopkins J, Vellinga N.  2015.  Could the creative class be a factor in Scottish rural development? Scottish Affairs. 24:207-226.
Ewert F, Rotter RP, Bindi M, Webber H, Trnka M, Kersebaum KC, Olesen JE, Van Ittersum MK, Janssen S, Rivington M et al..  2015.  Crop modelling for integrated assessment of risk to food production from climate change. Environmental Modelling and Software. 72:287-303.
Bowler DE, Haase P, Kroncke I, Tackenberg O, Bauer HG, Brendel C, Brooker RW, Gerisch M, Henle K, Hickler T et al..  2015.  A cross-taxon analysis of the impact of climate change on abundance trends in central Europe. Biological Conservation. 187:41-50.
Hurst CH, Hemsley PA.  2015.  Current perspective on protein S-acylation in plants: more than just a fatty anchor? Journal of Experimental Botany. 66:1599-1606.
2014
Subedi M, Matthews RB, Pogson M, Abegaz A, Balana BB, Oyesiku-Blakemore J, Smith J.  2014.  Can biogas digesters help to reduce deforestation in Africa? Biomass and Bioenergy. 70:87-98.
Benvenutti MA, Coates DB, Bindelle J, Poppi DP, Gordon IJ.  2014.  Can faecal markers detect a short term reduction in forage intake by cattle? Animal Feed Science and Technology. 194:44-57.
Fielding D, Newey S, van der Wal R, Irvine RJ.  2014.  Carcass provisioning to support scavengers: evaluating a controversial nature conservation practice. Ambio. 43:810-819.
Scott SW, MacFarlane SA, McGavin WJ, Fargette D.  2014.  Cassava Ivorian bacilliform virus is a member of the genus Anulavirus. Archives of Virology. 159:2791-2793.
Azevedo RA, Lea PJ, Leather SR, McNicol JW, Millman CA, Haslam RP, Valkonen JPT.  2014.  The centenary of Annals of Applied Biology in 2014. Annals of Applied Biology. 164:1-7.
Winder L, Alexander CJ, Woolley C, Perry JN, Holland JM.  2014.  Cereal aphid colony turnover and persistence in winter wheat. PLoS ONE. 9:e106822.
Calladine J, Pakeman RJ, Humphreys E, Huband S, Fuller RJ.  2014.  Changes in breeding wader assemblages, vegetation and land use within machair environments over three decades. Bird Study. 61:287-300.
Kikuchi T, Cock PJA, Helder J, Jones JT.  2014.  Characterisation of the transcriptome of Aphelenchoides besseyi and identification of a GHF 45 cellulase. Nematology. 16:99-107.
Canton GJ, Konrad JL, Moore DP, Caspe SG, Palarea-Albaladejo J, Campero CM, Chianini F.  2014.  Characterization of immune cell infiltration in the placentome of water buffaloes (Bubalus bubalis) infected with Neospora caninum during pregnancy. Journal of Comparative Pathology. 150:463-468.
Petrillo E, Herz MAG, Fuchs A, Reifer D, Fuller J, Yanovsky MJ, Simpson C, Brown JWS, Barta A, Kalyna M et al..  2014.  A chloroplast retrograde signal regulates nuclear alternative splicing. Science. 344:427-430.
Mayer KFX, Rogers J, Dolezel J, Pozniak C, Eversole K, Feuillet C, Gill B, Friebe B, Lukaszewski AJ, Sourdille P et al..  2014.  A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome. Science. 345
Brennan FP, Moynihan E, Griffiths BS, Hillier S, Owen J, Pendlowski H, Avery LM.  2014.  Clay mineral type effect on bacterial enteropathogen survival in soil. Science of the Total Environment. 468-469:302-305.
Wilson MJ, Wilson L.  2014.  Clay mineralogy and shale instability: an alternative conceptual analysis. Clay Minerals. 49:127-145.
Bizikova L, Crawford E, Nijnik M, Swart R.  2014.  Climate change adaptation planning in agriculture: processes, experiences and lessons learned from early adapters. Mitigation and Adaptation Strategies for Global Change. 19:411-430.
Raven JA, Beardall J.  2014.  CO2 concentrating mechanisms and environmental change. Aquatic Botany. 118:24-37.
Wilson A, Fenton B, Malloch G, Boag B, Hubbard S, Begg GS.  2014.  Coexisting small mammals display contrasting strategies for tolerating instability in arable habitat. European Journal of Wildlife Research. 60:811-820.
Shaw J, Love AJ, Makarova SS, Kalinina NO, Harrison BD, Taliansky ME.  2014.  Coilin, the signature protein of Cajal bodies, differentially modulates the interactions of plants with viruses in widely different taxa. Nucleus-Austin. 5:85-94.
Gotts NM, Polhill JG, Craig T, Galan-Diaz C.  2014.  Combining diverse data sources for CEDSS, an agent-based model of domestic energy demand. Structure and Dynamics: eJournal of Anthropological and Related Sciences. 7
Yongabi Anchang K, Avery L, Pertiwiningrum A.  2014.  A commentary on occupational infectious diseases due to agricultural practices in Sub-Saharan Africa. Biomass and Bioenergy. 70:99-111.
Young E, Muir D, Dawson A, Dawson, L.A.; Hillier S.  2014.  Community driven coastal management: an example of the implementation of a coastal defence bund on South Uist, Scottish Outer Hebrides. Ocean and Coastal Management. 94:30-37.
Moller S, Afgan E, Banck M, Bonnal RJP, Booth T, Chilton J, Cock PJA, Gumbel M, Harris N, Holland R et al..  2014.  Community-driven development for computational biology at Sprints, Hackathons and Codefests. BMC Bioinformatics. Suppl 14
Shyntum DY, Venter SN, Moleleki LN, Toth I, Coutinho TA.  2014.  Comparative genomics of type VI secretion systems in strains of Pantoea ananatis from different environments. BMC Genomics. 15:ArticleNo163.
Brown I, Castellazzi M, Feliciano D.  2014.  Comparing path dependence and spatial targeting of land use in implementing climate change responses. Land. 3:850-873.
Brown EM, Nitecki S, Pereira-Caro G, McDougall GJ, Stewart D, Rowland I, Crozier A, Gill CIR.  2014.  Comparison of in vivo and in vitro digestion on polyphenol composition in lingonberries: potential impact on colonic health. Biofactors. 40:611-623.
Farmer J, Matthews R, Smith P, Langan C, Hergoualc'h K, Verchot L, Smith JU.  2014.  Comparison of methods for quantifying soil carbon in tropical peats. Geoderma. 214:177-183.
Burchill W, James EK, Li D, Lanigan GJ, Williams M, Iannetta PPM, Humphreys J.  2014.  Comparisons of biological nitrogen fixation in association with white clover (Trifolium repens L.) under four fertiliser nitrogen inputs as measured using two 15N techniques. Plant and Soil. 385:287-302.
Moulin L, Klonowska A, Bournaud C, Booth K, Vriezen JAC, Melkonian R, James EK, Young JPW, Bena G, Hauser L et al..  2014.  Complete genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species. Standards in Genomic Sciences. 9
Palarea-Albaladejo J, Martin-Fernandez JA, Buccianti A.  2014.  Compositional methods for estimating elemental concentrations below the limit of detection in practice using R. Journal of Geochemical Exploration. 141:71-77.
Wang ZC, Liu ZF, Xu KH, Mayer LM, Zhang ZL, Kolker AS, Wu W.  2014.  Concentrations and sources of polycyclic aromatic hydrocarbons in surface coastal sediments of the northern Gulf of Mexico. Geochemical Transactions. 15
Schoeb C, Prieto I, Armas C, Pugnaire FI.  2014.  Consequences of facilitation: one plant's benefit is another plant's cost. Functional Ecology. 28:500-508.
Prashar A, Hornyik C, Young V, McLean K, Sharma SK, Dale MFB, Bryan GJ.  2014.  Construction of a dense SNP map of a highly heterozygous diploid potato population and QTL analysis of tuber shape and eye depth. Theoretical and Applied Genetics. 127:2159-2171.
Rowland LJ, Ogden EL, Bassil N, Buck EJ, McCallum S, Graham J, Brown A, Wiedow C, Campbell AM, Haynes KG et al..  2014.  Construction of a genetic linkage map of an interspecific diploid blueberry population and identification of QTL for chilling requirement and cold hardiness. Molecular Breeding. 34:2033-2048.
Schoeb CS, Callaway RM, Anthelme F, Brooker RW, Cavieres LA, Kikvidze Z, Lortie CJ, Michalet R, Pugnaire FI, Xiao S et al..  2014.  The context dependence of beneficiary feedback effects in plant facilitations. New Phytologist. 204:386-396.
Ribeiro KM, Baretto B, Pasqual M, White PJ, Braga RA, Dupuy LX.  2014.  Continuous, high-resolution biospeckle imaging reveals a discrete zone of activity at the root apex that responds to contact with obstacles. Annals of Botany. 113:555-563.
Benanti G, Saunders M, Tobin B, Osborne B.  2014.  Contrasting impacts of afforestation on nitrous oxide and methane emissions. Agricultural and Forest Meteorology. 198:82-93.
Addy S, Soulsby C, Hartley AJ.  2014.  Controls on the distribution of channel reach morphology in selectively glaciated catchments. Geomorphology. 211:121-133.
Fisher DO, Johnson CN, Lawes MJ, Fritz SA, McCallum H, Blomberg SP, van der Wal J, Abbott B, Frank A, Legge S et al..  2014.  The current decline of tropical marsupials in Australia: is history repeating? Global Ecology and Biogeography. 23:181-190.
Canton GJ, Katzer F, Maley SW, Bartley PM, Benavides-Silvan J, Palarea-Albaladejo J, Pang Y, Smith SH, Rocchi M, Buxton D et al..  2014.  Cytokine expression in the placenta of pregnant cattle after inoculation with Neospora caninum. Veterinary Immunology and Immunopathology. 161:77-89.
2013
Vanholme R, Cesarino I, Rataj K, Xiao Y, Sundin L, Goeminne G, Kim H, Cross J, Morreel K, Araujo P et al..  2013.  Caffeoyl Shikimate Esterase (CSE) is an enzyme in the lignin biosynthetic pathway. Science. 341:1103-1106.
Sutherland LA.  2013.  Can Organic Farmers Be 'Good Farmers'? Adding the 'taste of necessity' to the conventionalization debate Agriculture and Human Values. 30:429-441.
Gilbert L.  2013.  Can restoration of afforested peatland regulate pests and disease? Journal of Applied Ecology. 50:1226-1233.
Dietrich RC, Bengough AG, Jones HG, White PJ.  2013.  Can root electrical capacitance be used to predict root mass in soil? Annals of Botany. 112:457-464.
Dunn SM, Johnston L, Taylor C, Watson H, Cook Y, Langan SJ.  2013.  Capability and limitations of a simple grid-based model for simulating land use influences on stream nitrate concentrations. Journal of Hydrology. 507:110-123.
Halpin C.  2013.  Cell biology: up against the wall. Current Biology. 23:R1048-R1050.
Raven JA.  2013.  Cells inside cells: symbiosis and continuing phagotrophy. Current Biology. 23:R530-R531.
Katzner T, Johnson JA, Evans DM, Garner TWJ, Gompper ME, Altwegg R, Branch TA, Gordon IJ, Pettorelli N.  2013.  Challenges and opportunities for animal conservation from renewable energy development. Animal Conservation. 16:367-369.
Puttock A, Macleod CJA, Bol R, Sessford P, Dungait J, Brazier RE.  2013.  Changes in ecosystem structure, function and hydrological connectivity control water, soil and carbon losses in semi-arid grass to woody vegetation transitions. Earth Surface Processes and Landforms. 38:1602-1611.
Safaiefarahani B, Mostowfizadeh-Ghalamfarsa R, Cooke DEL.  2013.  Characterisation of Phytophthora inundata according to host range, morphological variation and multigene molecular phylogeny. Phytopathologia Mediterranea. 52:46-65.
Stam R, Howden AJM, Delgado-Cerezo M, Amaro TMMM, Motion GB, Pham J, Huitema E.  2013.  Characterization of cell death inducing Phytophthora capsici CRN effectors suggests diverse activities in the host nucleus. Frontiers in Plant Science. 4
Sun Q, Liu J, Zhang Q, Qing X, Dobson G, Li X, Qi B.  2013.  Characterization of three novel desaturases involved in the delta-6 desaturation pathways for polyunsaturated fatty acid biosynthesis from Phytophthora infestans. Applied Microbiology and Biotechnology. 97:7689-7697.
Gotame TP, Andersen L, Petersen KK, Pedersen HL, Ottosen CO, Graham J.  2013.  Chlorophyll fluorescence and flowering behaviour of annual-fruiting raspberry cultivars under elevated temperature regimes. European Journal of Horticultural Science. 78:193-202.
Munang R, Thiaw I, Alverson K, Mumba M, Liu J, Rivington M.  2013.  Climate change and ecosystem-based adaptation: a new pragmatic approach to buffering climate change impacts. Current Opinion in Environmental Sustainability. 5:67-71.
Rivington M, Matthews KB, Buchan K, Miller DG, Bellocchi G, Russell G.  2013.  Climate change impacts and adaptation scope for agriculture indicated by agro-meteorological metrics. Agricultural Systems. 114:15-31.
Dinnie E, Brown KM, Morris S.  2013.  Community, cooperation and conflict: negotiating the social wellbeing benefits of urban greenspace experience. Landscape and Urban Planning. 112:1-9.
Lusser M, Davies HV.  2013.  Comparative regulatory approaches for groups of new plant breeding techniques. New Biotechnology. 30:437-446.
Kenyon F, McBean D, Greer AW, Burgess CGS, Morrison AA, Bartley DJ, Bartley Y, Devin L, Nath M, Jackson F.  2013.  A comparative study of the effects of four treatment regimes on ivermectin efficacy, body weight and pasture contamination in lambs naturally infected with gastrointestinal nematodes in Scotland. International Journal for Parasitology - Drugs and Drug Resistance. 3:77-84.
Farruga K, Brandey K, Dawson LA, NicDaeid NN.  2013.  A comparison of enhancement techniques for footwear impressions on dark and patterned fabrics. Journal of Forensic Sciences. 58:1472-1485.
Chapman SJ, Bell JS, Campbell CD, Hudson G, Lilly A, Nolan AJ, Robertson AHJ, Potts JM, Towers W.  2013.  Comparison of soil carbon stocks in Scottish soils between 1978 and 2009. European Journal of Soil Science. 64:455-465.
Kamei H, Cock PJA.  2013.  Computation of balanced equivalence relations and their lattice for a coupled cell network. Siam Journal on Applied Dynamical Systems. 12:352-382.
Rhind SM, Kyle CE, Kerr C, Osprey M, Zhang ZL, Duff EI, Lilly A, Nolan A, Hudson G, Towers W et al..  2013.  Concentrations and geographic distribution of selected organic pollutants in Scottish surface soils. Environmental Pollution. 182:15-27.
Brooker RW, Kikvidze Z, Kunstler G, Liancourt P, Seifan M.  2013.  The concept and measurement of importance: a comment on Rees et al. 2012. Journal of Ecology. 101:1369-13789.
Sutherland LA, Mills J, Ingram J, Burton RJF, Dwyer J, Blackstock KL.  2013.  Considering the source: Commercialisation and trust in agri-environmental information and advisory services in England. Journal of Environmental Management. 118:96-205.
Sharma SK, Bolser D, de Boer J, Sonderkaer M, Amoros W, Carboni MF, D'Ambrosio JM, de la Cruz G, Di Genova A, Douches DS et al..  2013.  Construction of reference chromosome-scale Pseudomolecules for potato: integrating the potato genome with genetic and physical maps. G3-Genomes Genomes Genetics. 3:2031-2047.
Gregory PJ, Atkinson CJ, Bengough AG, Else MA, Fernandez-Fernandez F, Harrison RJ, Schmidt S.  2013.  Contributions of roots and rootstocks to sustainable, intensified crop production. Journal of Experimental Botany. 64:1209-1222.
McCallum S, Cullen DW, Hedley P, Simpson C, Hancock RD, Milne L, Hackett CA, Graham J.  2013.  Control of fruit quality traits in red raspberry, a review from the James Hutton Institute. Aspects of Applied Biology. 119:1-16.
Whitehead PG, Crossman J, Balana BB, Futter MN, Comber S, Jin L, Skuras D, Wade AJ, Bowes MJ, Read DS.  2013.  A cost-effectiveness analysis of water security and water quality: impacts of climate and land-use change on the River Thames system. Philosophical Transactions of the Royal Society, Series A. 371:201204B.
Reynolds B, Chamberlain PM, Poskitt J, Woods C, Scott WA, Rowe EC, Robinson DA, Frogbrook ZL, Keith AM, Henrys PA et al..  2013.  Countryside survey: National "Soil Change" 1978-2007 for topsoils in Great Britain - acidity, carbon, and total nitrogen status. Vadose Zone Journal. 12
Meier-Augenstein W, Hobson KA, Wassenaar LI.  2013.  Critique: measuring hydrogen stable isotope abundance of proteins to infer origins of wildlife, food and people. Bioanalysis. 5:751-767.
Sprent JI, Meeks JC.  2013.  Cyanobacterial nitrogen fixation in association with feather mosses: moss as boss? New Phytologist. 200:5-6.
2012
Jackson G, Macdonald LM, Brewer MJ, Dawson LA.  2012.  A conceptual framework for expert opinions in forensic geoscience. Science and Justice.
Whisson SC, Vetukuri R, Avrova AO, Dixelius C.  2012.  Can silencing of transposons contribute to variation in effector gene expression in Phytophthora infestans? Mobile Genetic Elements. 2:110-114.
Beesley L.  2012.  Carbon storage and fluxes in existing and newly created urban soils. Journal of Environmental Management. 104:158-165.
Love AJ, Geri C, Laird J, Carr C, Yun BW, Loake GJ, Tada Y, Sadanandom A, Milner JJ.  2012.  Cauliflower mosaic virus protein P6 inhibits signaling responses to salicylic acid and regulates innate immunity. PLoS One. 7:e47535.
Logie L, Harthill J, Patel K, Bacon S, Hamilton DL, Macrae K, McDougall GJ, Wang HH, Xue L, Jiang H et al..  2012.  Cellular responses to the metal-binding properties of metformin. Diabetes. 61:1423-1433.
Sonnenberg R, Bransby MF, Bengough AG, Hallett PD, Davies MCR.  2012.  Centrifuge modelling of soil slopes containing model plant roots. Canadian Geotechnical Journal. 49:1-17.
Flynn KJ, Blackford JC, Baird ME, Raven JA, Clark DR, Beardall J, Brownlee C, Fabian H, Wheeler GL.  2012.  Changes in pH at the exterior surface of plankton with ocean acidification. Nature Climate Change. 2:510-513.
Valdes Y, Viaene N, Blok V, Palomares-Rius JE, Moens M.  2012.  Changes in the pre-parasitic developmental stage of Globodera rostochiensis in response to green manures. Nematology. 14:925-932.
Newton AC, Torrance L, Holden N, Toth IK, Cooke DEL, Blok VC, Gilroy EM.  2012.  Chapter three - climate change and defence against pathogens in plants. Advances in Applied Microbiology. 81:89-132.
Farrugia K, Bandey H, Dawson LA, NicDaeid NN.  2012.  Chemical enhancement of soil based footwear impressions on fabric. Forensic Science International. 219:12-28.
Brittain SR, Cox AG, Tomos AD, Paterson E, Siripinyanond A, McLeod CW.  2012.  Chemical speciation studies on DU contaminated soils using flow field flow fractionation linked to inductively coupled plasma mass spectrometry (FIFFF-ICP-MS). Journal of Environmental Monitoring. 14:782-790.
Alizai A, Hillier S, Clift PD, Giosan L, Hurst A, VanLaningham S, Macklin M.  2012.  Clay mineral variations in holocene terrestrial sediments from the Indus Basin. Quaternary Research. 77:368-381.
Fischer A, Peters V, Neebe M, Vavra J, Kriel A, Lapka M, Megyesi B.  2012.  Climate change? No, wise resource use is the issue: social representations of energy, climate change and the future Environmental Policy and Governance. 22:161-176.
Toorop PE, Cuerva RC, Begg GS, Locardi B, Wishart J, Squire GR, Iannetta PPM.  2012.  Co-adaptation of seed dormancy and flowering time in the arable weed Capsella bursa-pastoris (shepherd's purse). Annals of Botany. 109:481-489.
Davies AL, White RM.  2012.  Collaboration in natural resource governance: Reconciling stakeholder expectations in deer management in Scotland. Journal of Environmental Management.. 112:160-169.
Sutherland WJ, Bellingan L, Bellingham JR, Blackstock JJ, Bloomfield RM, Bravo M, Cadman VM, Cleevely DD, Clements A, Cohen AS et al..  2012.  A collaboratively-derived science-policy research agenda. PloS ONE. 7:e31824.
Fridley JD, Grime JP, Huston MA, Pierce S, Smart SM, Thompson K, Boerger L, Brooker RW, Cerabolini BEL, Gross N et al..  2012.  Comment on "Productivity Is a Poor Predictor of Plant Species Richness". Science. 335:1441.
Suarez-Moreno ZR, Caballero-Mellado J, Coutinho BG, Mendonca-Previato L, James EK, Venturi V.  2012.  Common features of environmental and potentially beneficial plant-associated Burkholderia. Microbial Ecology. 63:249-266.
Arts K, Fischer A, van der Wal R.  2012.  Common stories of reintroduction: A discourse analysis of documents supporting animal reintroductions to Scotland. Land Use Policy. 29:911-920.
Krueger T, Quinton JN, Freer J, Macleod CJA, Bilotta GS, Brazier RE, Hawkins JMB, Haygarth PM.  2012.  Comparing empirical models for sediment and phosphorus transfer from soils to water at field and catchment scale under data uncertainty. European Journal of Soil Science. 63:221-223.
Roberts AMI.  2012.  Comparison of regression methods for phenology. International Journal of Biometeorology. 56:707-717.
Hoolahan A, Blok VC, Gibson T, Dowton M.  2012.  A comparison of three molecular markers for the identification of populations of Globodera pallida. Journal of Nematology. 44:7-17.
Palomares-Rius JE, Hedley PE, Cock PJA, Morris JA, Jones JT, Vovlas N, Blok V.  2012.  Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. Molecular Plant Pathology. 13:1120-1134.
Cognat C, Shepherd T, Verrall SR, Stewart D.  2012.  Comparison of two headspace sampling techniques for the analysis of off-flavour volatiles from oat based products. Food Chemistry. 134:1592-1600.
Langkilde S, Schroder M, Frank T, Shepherd LVT, Conner S, Davies HV, Meyer O, Danier J, Rychlik M, Belknap WR et al..  2012.  Compositional and toxicological analysis of a GM potato line with reduced alpha-solanine content - A 90-day feeding study in the Syrian Golden hamster. Food and Chemical Toxicology. 64:177-185.
Vergara P, Mougeot F, Martinez-Padilla, J.; Millan J, Leckie F, Redpath SM.  2012.  The condition dependence of a secondary sexual trait is stronger under high parasite infection level. Behavioural Ecology. 23:502-511.
Stien A, Ims RA, Albon SD, Fuglei E, Irvine RJ, Ropstad E, Halvorsen O, Langvatn R, Loe LE, Veiberg V et al..  2012.  Congruent responses to weather variability in high arctic herbivores. Biology Letters. 8:1002-1005.
Perkins DM, Yvon-Durocher G, Demars BOL, Reiss J, Pichler DE, Friberg N, Trimmer M, Woodward G.  2012.  Consistent temperature dependence of respiration across ecosystems contrasting in thermal history. Global Change Biology. 18:1300-1311.
Walters DR, Avrova A, Bingham IJ, Burnett FJ, Fountaine J, Havis ND, Hoad SP, Hughes G, Looseley M, Oxley SJP et al..  2012.  Control of foliar diseases in barley: towards an integrated approach. European Journal of Plant Pathology. 133:33-73.
Jackson-Blake LA, Helliwell RC, Britton A, Gibbs S, Coull MC, Dawson LA.  2012.  Controls on soil solution nitrogen along an altitudinal gradient in the Scottish uplands. Science of the Total Environment. 431:100-108.
Hrynkiewicz K, Toljander YK, Baum C, Fransson PMA, Taylor AFS, Weih M.  2012.  Correspondence of ectomycorrhizal diversity and colonisation of willows (Salix spp.) grown in short rotation coppice on arable sites and adjacent natural stands. Mycorrhiza. 22:603-613.
Balana BB, Muys B, Haregeweyn N, Descheemaeker K, Deckers J, Poesen J, Nyssen J, Mathijs E.  2012.  Cost-benefit analysis of soil and water conservation measures: The case of exclosures in northern Ethiopia. Forest Policy and Economics. 15:27-36.
Bakam I, Balana BB, Matthews RB.  2012.  Cost-effectiveness analysis of policy instruments for greenhouse gas emission mitigation in the agricultural sector. Journal of Environmental Management. 112:33-44.
Martin-Ortega J, Gonzalez-Eguino M, Markandya A.  2012.  The costs of drought: the 2007-2008 case of Barcelona. Water Policy. 14:539-560.
Birch PRJ, Bryan GJ, Fenton B, Gilroy EM, Hein I, Jones JT, Prashar A, Taylor MA, Torrance L, Toth IK.  2012.  Crops that feed the world 8: potato: are the trends of increased global production sustainable? Food Security. 4:477-508.
2011
Thornton B, Zhang ZL, Mayes RW, Hogberg MN, Midwood AJ.  2011.  Can gas chromatography combustion isotope ratio mass spectrometry be used to quantify organic compound abundance? Rapid Communications in Mass Spectrometry. 23:2433-2438.
Cooper JM, Burton D, Daniell TJ, Griffiths BS, Zebarth BJ.  2011.  Carbon mineralization kinetics and soil biological characteristics as influenced by manure addition in soil incubated at a range of temperatures. European Journal of Soil Biology. 47:392-399.
Prager K, Helming K, Hagedorn K.  2011.  The challenge of developing effective soil conservation policies (editorial). Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies. 22:1-4.
Midwood AJ, Millard P.  2011.  Challenges in measuring the d13C of the soil surface CO2 efflux. Rapid Communications in Mass Spectrometry. 25:232-242.
Jeong GY, Hillier S, Kemp RA.  2011.  Changes in mineralogy of loess-paleosol sections across the Chinese Loess Plateau. Quaternary Research. 75:245-255.
Pakeman RJ, Huband S, Kriel A, Lewis R.  2011.  Changes in the management of Scottish machair communities and associated habitats from the 1970s to the present. Scottish Geographical Journal. 127:267-287.
Pozsgai G, Littlewood NA.  2011.  Changes in the phenology of the ground beetle Pterostichus madidus (Fabricius, 1775). Insect Science. 18:462-472.
Irbe I, Andersone I, Andersons B, Noldt G, Dizhbite T, Kurnosova N, Nuopponen M, Stewart D.  2011.  Characterisation of the initial degradation stage of Scots pine (Pinus sylvestris L.) sapwood after attack by brown-rot fungus Coniophora puteana. Biodegradation. 22:719-728.
Dawson IK, Vinceti B, Weber JC, Neufeldt H, Russell JR, Lengkeek AG, Kalinganire A, Kindt R, Lilles JPB, Roshetko J et al..  2011.  Climate change and tree genetic resource management: maintaining and enhancing the productivity and value of smallholder tropical agroforestry landscapes (Review). Agroforestry Systems. 81:67-78.
Brown I, Poggio L, Gimona A, Castellazzi MS.  2011.  Climate change, drought risk and land capability for agriculture: implications for land-use in Scotland. Regional Environmental Change. 11:503-518.
Chakraborty SK, Newton AC.  2011.  Climate change, plant diseases and food security: an overview. Plant Pathology. 60:2-14.
Raven JA.  2011.  Climate: baselines for the biological effects of environmental change. Current Biology. 21:R190-R192.
Kikvidze Z, Michalet R, Brooker RW, Cavieres LA, Lortie CJ, Pugnaire FI, Callaway RM.  2011.  Climatic drivers of plant-plant interactions and diversity in alpine communities. Alpine Botany. 121:63-70.
Limpens J, Granath G, Gunnarsson U, Aerts R, Bayley S, Bragazza L, Bubier J, Buttler A, van den Berg LJL, Francez AJ et al..  2011.  Climatic modifiers of the response to nitrogen deposition in peat-forming Sphagnum mosses: a meta-analysis. New Phytologist. 191:496-507.
Blackstock KL, Dinnie E, Trench H, Miles G.  2011.  Co-researching the Cairngorms: supporting the aims of, not just researching in, the Cairngorms National Park. Scottish Geographical Journal.. 127:40-60.
Chen XW, Hedley PE, Morris J, Liu H, Niks RE, Waugh R.  2011.  Combining genetical genomics and bulked segregant analysis-based differential expression: an approach to gene localization. Theoretical and Applied Genetics. 122:1375-1383.
Fisher M, Downie H, Welten MCM, Delgado I, Bain AA, Planzer T, Sherman A, Sang H, Tickle C.  2011.  Comparative analysis of 3D expression patterns of transcription factor genes and digit fate maps in the developing chick wing. PLoS ONE. 6:e18661.
Bayer MM, Milne I, Stephen G, Shaw P, Cardle L, Wright F, Marshall DF.  2011.  Comparative visualization of genetic and physical maps with Strudel. Bioinformatics. 27:1307-1308.
Cullen DW, Harwood WA, Smedley M, Davies HV, Taylor MA.  2011.  Comparison of DNA walking methods for isolation of transgene flanking regions in GM potato. Molecular Biotechnology. 49:19-31.
Dick J, Andrews C, Beaumont DA, Benham S, Brooks DR, Corbett S, Lloyd D, McMillan S, Monteith DT, Pilgrim ES et al..  2011.  A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
Vinten AJA, Artz RRE, Thomas N, Potts JM, Avery LM, Langan SJ, Watson H, Cook Y, Taylor C, Abel C et al..  2011.  Comparison of microbial community assays for the assessment of stream biofilm ecology. Journal of Microbiological Methods. 85:190-198.
Kikvidze Z, Suzuki M, Brooker R.  2011.  Conceptualising importance - response to Freckleton and Rees. Trends in Ecology and Evolution. 26:499-500.
Balana BB, Yatich T, Makela M.  2011.  A conjoint analysis of landholder preferences for reward-based land-management contracts in Kapingazi watershed, Eastern Mount Kenya. Journal of Environmental Management. 92:2634-2646.
Porter R, Norman RA, Gilbert L.  2011.  Controlling tick borne diseases through domestic animal management: a theoretical approach. Theoretical Ecology. 4:321-339.
Dyer GA, Taylor JE.  2011.  The corn price surge: impacts in rural Mexico. World Development. 39:1878-1887.
Raven JA.  2011.  The cost of photoinhibition. Physiologia Plantarum. 142:87-104.
Martin-Ortega J.  2011.  The costs of adaptation to climate change in freshwater systems: the state-of-play. Revista Espanola de Economia Agraria y de los Recursos Naturales. 11:3-26.
Newton AC, Flavell AJ, George TS, Leat P, Mullholland BJ, Ramsay L, Revoredo-Giha C, Russell JR, Steffenson BJ, Swanston JS et al..  2011.  Crops that feed the world 4. Barley: a resilient crop? Strengths and weaknesses in the context of food security Food Security. 3:141-178.
2010
Jones HG.  2010.  Can water droplets on leaves cause leaft scorch? New Phytologist. 185:865-867.
Hedley PE, Russell JR, Jorgensen L, Gordon S, Morris JA, Hackett CA, Cardle L, Brennan RM.  2010.  Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.). BMC Plant Biology. 10:-202.
Sonnenberg R, Bransby MF, Hallett PD, Bengough AG, Mickovski SB, Davies MCR.  2010.  Centrifuge modelling of soil slopes reinforced with vegetation. Canadian Geotechnical Journal. 47:1415-1430.
Newton AC, Akar T, Baresel JP, Bebeli PJ, Bettencourt E, Bladenopoulos KV, Czembor JH, Fasoula DA, Katsiotis A, Koutis K et al..  2010.  Cereal landraces for sustainable agriculture. A review (Review). Agronomy for Sustainable Development. 30:237-269.
Pattemore JA, Rice N, Marshall DF, Waugh R, Henry RJ.  2010.  Cereal variety identification using MALDI-TOF mass spectrometry SNP genotyping. Journal of Cereal Science. 52:356-361.
Dagleish MP, Finlayson J, Bayne C, MacDonald S, Sales J, Hodgson JC.  2010.  Characterisation and time course of pulmonary lesions in calves after intratracheal infection with Pasteurella multocida A:3. Journal of Comparative Pathology. 142:157-169.
Mascia T, Cillo F, Fanelli V, Finetti-Sialer MM, De Stradis A, Palukaitis P, Gallitelli D.  2010.  Characterization of the interactions between Cucumber mosaic virus and Potato virus Y in mixed infections in tomato. Molecular Plant-Microbe Interactions. 23:1514-1524.
Feng X, Simpson AJ, Gregorich EG, Elberling B, Hopkins DW, Sparrow AD, Novis PM, Greenfield LG, Simpson MJ.  2010.  Chemical characterization of microbial-dominated soil organic matter in the Garwood Valley, Antarctica. Geochimica et Cosmochimica Acta. 74:6485-6498.
Elderfield H, Riebesell U, Raven JA, Gattuso JP, Lipps J.  2010.  Closure threat to key museum research facility. Nature. 465:-1005.
Mitchell C, Johnson SN, Gordon SC, Birch ANE, Hubbard SF.  2010.  Combining plant resistance and a natural enemy to control Amphorophora idaei. BioControl. 55:321-327.
Chen XY, Daniell TJ, Neilson R, O'Flaherty V, Griffiths BS.  2010.  A comparison of molecular methods for monitoring soil nematodes and their use as biological indicators. European Journal of Soil Science. 46:319-324.
Denwood MJ, Reid SWJ, Love S, Nielsen MK, Matthews L, McKendrick IJ, Innocent GT.  2010.  Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.
Smith P, Gregory PJ, van Vuuren D, Obersteiner M, Havlik P, Rounsevell M, Woods J, Stehfest E, Bellarby J.  2010.  Competition for land. Philosophical Transactions of the Royal Society of London B - Biological Sciences. 365:2941-2957.
McGavin WJ, McMenemy LS, MacFarlane SA.  2010.  The complete sequence of a UK strain of Black raspberry necrosis virus. Archives of Virology. 155:1897-1899.
Dupuy L, MacKenzie J, Haseloff J.  2010.  Coordination of plant cell division and expansion in a simple morphogenetic system. Proceedings of the National Academy of Sciences, USA. 107:2711-2716.
Bartlett MD, Briones MJI, Neilson R, Schmidt O, Spurgeon D, Creamer RE.  2010.  A critical review of current methods in earthworm ecology: From individuals to populations (Review). European Journal of Soil Biology. 46:67-73.
Gonz I, Mart I, Rakitina DV, Lewsey MG, Atencio FA, Llave C, Kalinina NO, Carr JP, Palukaitis P, Canto T.  2010.  Cucumber mosaic virus 2b protein subcellular targets and interactions: Their significance to RNA silencing suppressor activity. Molecular Plant-Microbe Interactions. 23:294-303.
Raven JA.  2010.  Cyanotoxins: A poison that frees phosphate. Current Biology. 20:R850-R852.
Nayak DR, Miller DR, Nolan AJ, Smith P, Smith JU.  2010.  Calculating carbon budgets of wind farms on Scottish peatlands. Mires and Peat, Special Volume: Wind Farms on Peatland, 2008-2010. 4(Art. 9):1-23.
Hanson S, Nicholls RJ, Balson P, Brown I, French JR, Spencer T.  2010.  Capturing coastal geomorphological change within regional integrated assessment: an outcome-driven fuzzy logic approach. Journal of Coastal Research. 26(5):831-842.
Aspinall RJ.  2010.  A century of physical geography research in the Annals. Annals of the Association of American Geographers. 100(5):1049-1059.
Andersen R, Grasset L, Thormann MN, Rochefort L, Francez AJ.  2010.  Changes in microbial community structure and function following Sphagnum peatland restoration. Soil Biology and Biochemistry. 42(2):291-301.
Singh BK.  2010.  Climate change and human health: an environmental perspective. Climate Research. 41(1):41-44.
Munang R, Rivington M, Takle ES, Mackey B, Thiaw I, Liu J.  2010.  Climate information and capacity needs for ecosystem management under a changing climate. Procedia Environmental Sciences. 1:206-227.
Conniff A, Craig T, Laing R, Galan-Diaz C.  2010.  A comparison of active navigation and passive observation of desktop models of future built environments. Design Studies. 31(5):419-438.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.