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2022
Le-Yang Y, Shu-Yi-Dan Z, Chen-Shuo L, Xin-Rong H, Neilson R, Yang X-RY.  2022.  Effects of biofertilizer on soil microbial diversity and antibiotic resistance genes. Science of the Total Environment.
2021
Lin H, Sun WC, Jin DF, Yu OG, Yang YY, Zhang Z, Sun PF, Ma JW.  2021.  Effect of composting on the conjugative transmission of sulfonamide resistence and sulfonamide-resistant baterial population. Journal of Cleaner Production. 285:ArticleNo.125483.
Arrieta M, Willems G, DePessemier G, Colas I, Burkholz A, Darracq A, Vanstraelen S, Pacolet P, Barré C, Kempeneers P et al..  2021.  The effect of heat stress on sugar beet recombination. Theoretical and Applied Genetics. 134:81-93.
Prakongkep N, Gilkes RJ, Wisapipat W, Leksungroen P, Kerdohana C, Inboonchuay T, Delbos E, Strachan LJ, Ariyasakul P, Ketdan C et al..  2021.  Effects of biochar on properties of tropical sandy soils under organic agriculture. Journal of Agricultural Science, 13, 1.
He LY, Lv LX, Pillai SC, Wang HL, Xue JM, Ma YF, Liu YL, Chen YL, Wu L, Zhang ZL et al..  2021.  Efficient degradation of diclofenac sodium by periodate activation using Fe/Cu bimetallic modified sewage sludge biochar/UV system. Science of the Total Environment. 783:ArticleNo.146794.
Kuhfuss L, Préget R, Thoyer S, de Vries FP, Hanley N.  2021.  Enhancing spatial coordination in payment for ecosystem services schemes with non-pecuniary preferences. Ecological Economics..
Kuhfuss L, Préget R, Thoyer S, de Vries FP, Hanley N.  2021.  Enhancing spatial coordination in payment for ecosystem services schemes with non-pecuniary preferences. Ecological Economics..
Sumner RN, Byers A, Zhang ZL, Agerholm JS, Lindh L, England GCW, Lea RG.  2021.  Environmental chemicals in dog testes reflect their geographical source and may be associated with altered pathology. Scientific Reports. 11:ArticleNo.7361.
Rowney FM, Brennan GL, Skjoth CA, Griffith GW, McInnes RN, Clewlow Y, Adams-Groom B, Barber A, de Vere N, Economou T et al..  2021.  Environmental DNA reveals links between abundance and composition of airborne grass pollen and respiratory health. Current Biology. 31:1995-2003.
Dwyer C, Millett J, Pakeman RJ, Jones L.  2021.  Environmental modifiers of the relationship between water table depth and Ellenberg’s indicator of soil moisture. Ecological Indicators. 132:ArticleNo.108320.
Aponte H, Mondaca P, Santander C, Meier S, Paolini J, Butler B, Rojas C, Diez MC, Cornejo P.  2021.  Enzyme activities and microbial functional diversity in metal(loid) contaminated soils near to a copper smelter. Science of the Total Environment. 779:ArticleNo.146423.
Milne L, Bayer M, Rapazote-Flores P, Mayer CD, Waugh R, Simpson CG.  2021.  EORNA, a barley gene and transcript abundance database. Scientific Data. 8:ArticleNo.90.
Luczaj L, Wilde M, Townsend L.  2021.  The ethnobiology of contemporary British foragers: foods they teach, their sources of inspiration and impact. Sustainability. 13:ArticleNo.3478.
Jamwal P, Raj AV, Raveendran L, Shirin S, Connelly S, Yeluripati J, Richards S, Rao L, Helliwell RC, Tamburini M.  2021.  Evaluating the performance of horizontal sub-surface flow constructed wetlands: a case study from southern India. Ecological Engineering Journal. 162:ArticleNo.106170.
Ardley J, Sprent J.  2021.  Evolution and biogeography of actinorhizal plants and legumes: A comparison. Journal of Ecology. 109:1098-1121.
Barwell LJ, Perez-Sierra A, Henricot B, Harris A, Burgess TI, Hardy G, Scott P, Williams N, Cooke DEL, Green S et al..  2021.  Evolutionary trait-based approaches for predicting future global impacts of plant pathogens in the genus Phytophthora. Journal of Applied Ecology. 58:718-730.
Dobani S, Latimer C, McDougall GJ, Allwood JW, Pereira-Caro G, Moreno-Rojas JM, Ternan NG, Pourshahidi LK, Lawther R, Tuohy KM et al..  2021.  Ex vivo fecal fermentation of human ileal fluid collected after raspberry consumption modifies (poly)phenolics and modulates genoprotective effects in colonic epithelial cells. Redox Biology.. 40:ArticleNo.101862.
Puidet B, Mabon R, Guibert M, Kiiker R, Soonvald L, Le VH, Eikemo H, Dewaegeneire P, Saubeau G, Chatot C et al..  2021.  Examining phenotypic traits contributing to the spread in northern European potato crops of EU_41_A2, a new clonal lineage of Phytophthora infestans. Phytopathology. Published online..
Puidet B, Mabon R, Guibert M, Kiiker R, Soonvald L, Le VH, Eikemo H, Dewaegeneire P, Saubeau G, Chatot C et al..  2021.  Examining phenotypic traits contributing to the spread in northern European potato crops of EU_41_A2, a new clonal lineage of Phytophthora infestans. a new clonal lineage of Phytophthora infestans.. :414-421.
Puidet B, Mabon R, Guibert M, Kiiker R, Soonvald L, Le VH, Eikemo H, Dewaegeneire P, Saubeau G, Chatot C et al..  2021.  Examining phenotypic traits contributing to the spread in northern European potato crops of EU_41_A2, a new clonal lineage of Phytophthora infestans. a new clonal lineage of Phytophthora infestans.. :414-421.
Slee B, Polman N.  2021.  An exploration of potential growth pathways of social innovations in rural Europe. Innovation - The European Journal of Social Science Research.. 34:251271.
Fisher JC, Bicknell JE, Irvine KN, Fernandes D, Mistry J, Davies ZG.  2021.  Exploring how urban nature is associated with human wellbeing in a neotropical city. Landscape and Urban Planning. 212:ArticleNo.104119.
Austen G, Dallimer M, Irvine KN, Maund PR, Fish RD, Davies ZG.  2021.  Exploring shared public perspectives on biodiversity attributes. People and Nature. 3:901-913.
Fischer A, Dinnie E, Ellis R, Eastwood A, Carter A, Welsh G.  2021.  Exploring the potential of citizen social science for environmental and sustainability research: experiences of and with community-based researchers. Citizen Science: Theory and Practice. 6:1-12.
2020
Pongrac P, Fischer S, Thompson JA, Wright G, White PJ.  2020.  Early responses of Brassica oleracea roots to zinc supply under sufficient and sub-optimal phosphorus supply. Frontiers in Plant Science. 10:ArticleNo.1645.
Petrillo E, Kalyna M, Mandadi KK, Tu SL, Simpson CG.  2020.  Editorial: Alternative splicing regulation in plants. Frontiers of Plant Science. 11:ArticleNo.913.
Gatiboni L, Brunetto G, Pavinato PS, George TS.  2020.  Editorial: Legacy phosphorus in agriculture: role of past management and perspectives for the future. Frontiers inEarth Science. 8:ArticleNo.619935.
Schikora A, Jackson RW, Van Overbeek L, Holden NJ.  2020.  Editorial: Plants as alternative hosts for human and animal pathogens - second edition. Frontiers in Microbiology. 11:ArticleNo.1439.
Farooq N, Sarwar G, Abbas T, Beesley L, Nadeem MA, Javaid MM, Matloob A, Naseem M, Ikram NA.  2020.  Effect of drying-rewetting durations in combination with synthetic fertilizers and crop residues on soil fertility and maize production. Pakistan Journal of Botany. 52:2051-2058.
Arrieta M, Willems G, DePessemier G, Colas I, Burkholz A, Darracq A, Vanstraelen S, Pacolet P, Barré C, Kempeneers P et al..  2020.  The effect of heat stress on sugar beet recombination. Theoretical and Applied Genetics.
Cui S, Hough RL, Yates K, Osprey M, Kerr C, Cooper P, Coull M, Zhang Z.  2020.  Effects of season and sediment-water exchange processes on the partitioning of pesticides in the catchment environment: Implications for pesticides monitoring. Science of the Total Environment. 698:ArticleNo.134228.
Shortall O, Brown KM.  2020.  Enacting and resisting biosecurity citizenship: More-than-human geographies of enrolment in a disease eradication scheme in Scotland. Environment and Planning E: Nature and Space, Published online..
Raven JA, Beardall J.  2020.  Energizing the plasmalemma of marine photosynthetic organisms: the role of primary active transport. Journal of the Marine Biological Association of the United Kingdom. 100:333-346.
Faccioli M, Czajkowski M, Glenk K, Martin-Ortega J.  2020.  Environmental attitudes and place identity as determinants of preferences for ecosystem services. Ecological Economics. 174:ArticleNo.106600.
Campos P, Alvarez A, Oviedo JL, Mesa B, Caparros A, Ovando P.  2020.  Environmental incomes: Refined standard and extended accounts applied to cork oak open woodlands in Andalusia, Spain. Ecological Indicators. 117:ArticleNo.106551.
Barton S, Jenkins J, Buckling A, Schaum C, Smirnoff N, Raven JA, Yvon-Durocher G.  2020.  Evolutionary temperature compensation of carbon fixation in marine phytoplankton. Ecology Letters. 23:722-733.
2019
Hanley N, Roberts M.  2019.  The economic benefits of invasive species management. People and Nature. 1:124-137.
Tinch R, Beaumon N, Sunderlan T, Ozdemiroglu E, Barton D, Bowe C, Borger T, Burgess P, Cooper CN, Faccioli M et al..  2019.  Economic valuation of ecosystem goods and services: a review for decision makers. Journal of Environmental Economics and Policy. 8:359-378.
Abdul-Salam Y, Hawes C, Roberts D, Young M.  2019.  The economics of alternative crop production systems in the context of farmer participation in carbon trading markets. Agroecology and Sustainable Food Systems. 43:67-91.
Everard M, Kangabam R, Kumar Tiwari M, McInnes RJ, Kumar R, Talukdar GH, Dixon H, Joshi P, Allan R, Joshi D et al..  2019.  Ecosystem service assessment of selected wetlands of Kolkata and the Indian Gangetic Delta: multi-beneficial systems under differentiated management stress. Wetlands Ecology and Management. Published online..
Linder HP, Aspinall R, Bonaccoroso E, Guayasamin JM, Hoorn C, Ortega-Andrade HM.  2019.  Editorial. Journal of Biogeography. 46:1625-1626.
van Voorn GAK, Polhill JG, Edmonds B, Hofstede GJ.  2019.  Editorial - Agent-based modelling for resilience. Ecological Complexity. 40:ArticleNo.100775.
Vasconcelos MW, Balázs B, Kelemen E, Squire GR, Iannetta PPM.  2019.  Editorial: Transitions to sustainable food and feed systems. Frontiers in Plant Science. 10:ArticleNo.1283.
Kim M, Pernice M, Watson-Lazowski A, Guagliardo P, Kilburn MR, Larkum AWD, Raven JA, Ralph PJ.  2019.  Effect of reduced irradiance on C-13 uptake, gene expression and protein activity of the seagrass Zostera muelleri. Marine Environmental Research. 149:80-89.
Engelhardt IC, Blazewicz SJ, Barnard RL.  2019.  Effects of contrasting precipitation patterns on the trajectory of actively growing and inactive microbial communities after rewetting. Soil Biology and Biochemistry. 134:172-174.
Andrews M, Condron LM, Kemp PD, Topping JF, Lindsey K, Hodge S, Raven JA.  2019.  Elevated CO2 effects on nitrogen assimilation and growth of C-3 vascular plants are similar regardless of N-form assimilated. Journal of Experimental Botany. 70:683-690.
Moller LR, Smith-Hall C, Meilby H, Rayamajhi S, Herslund LB, Larsen HO, Nielsen OJ, Byg A.  2019.  Empirically based analysis of households coping with unexpected shocks in the central Himalayas. Climate and Development. 11:597-606.
Pagès M, Fischer A, van der Wal R, Lambin X.  2019.  Empowered communities or "cheap labour"? Engaging volunteers in the rationalised management of invasive alien species in Great Britain Journal of Environmental Management. 228:102-111.
McLachlan I, Marion G, McKendrick IJ, Porphyre T, Handel IG, Bronsvoort BMD.  2019.  Endemic foot and mouth disease: pastoral in-herd disease dynamics in sub-Saharan Africa. Scientific Reports. 9:ArticleNo.17349.
Solopova A, van Tilburg AY, Foito A, Allwood JW, Stewart D, Kulakauskas S, Kuipers OP.  2019.  Engineering Lactococcus lactis for the production of unusual anthocyanins using tea as substrate. Metabolic Engineering. 54:160-169.
Grabowiecka E, Martin D, Crozier L, Holden NJ.  2019.  Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms. Data in Brief. 22:126-131.
Taft HE, Cross P, Hastings A, Yeluripati J, Jones DL.  2019.  Estimating greenhouse gases emissions from horticultural peat soils using a DNDC modelling approach. Journal of Environmental Management. 233:681-694.
Bustos-Korts D, Dawson IK, Russell J, Tondelli A, Guerra D, Ferrandi C, Strozzi F, Nicolazzi EL, Molnar-Land M, Ozkan H et al..  2019.  Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley. The Plant Journal. 99:1172-1191.
Shackleton RT, Richardson DM, Shackleton CM, Bennett B, Crowley SL, Dehnen-Schmutz K, Estevez RA, Fischer A, Kueffer C, Kull CA et al..  2019.  Explaining people's perceptions of invasive alien species - A conceptual framework. Journal of Environmental Management. 229:10-26.
Gonzalez-Redin J, Polhill JG, Dawson TP, Hill R, Gordon IJ.  2019.  Exploring sustainable scenarios in debt-based social-ecological systems: The case for palm oil production in Indonesia. Ambio, Published online..
Whitfield S, Beauchamp E, Boyd DS, Burslem D, Byg A, Colledge F, Cutler MEJ, Didena M, Dougill A, Foody G et al..  2019.  Exploring temporality in socio-ecological resilience through experiences of the 2015-16 El Niño across the Tropics. Global Environmental Change - Human and Policy Dimensions. 55:1-14.
Eze JI, Innocent GT, Adam K, Huntley S, Gunn GJ.  2019.  Exploring the longitudinal dynamics of herd BVD antibody test results using model-based clustering. Scientific Reports. 9:ArticleNo.11353.
Carvalho GL, Silva R, Goncalves JM, Batista TM, Pereira L.  2019.  Extracts of the seaweed Bifurcaria bifurcata display antifungal activity against human dermatophyte fungi. Journal of Oceanology and Limnology. 37:848-854.
2018
Setten G, Brown KM.  2018.  Ecosystem services as an integrative framework: what is the potential? Land Use Policy. 75:549-556.
Zavrel T, Szabo M, Tamburic B, Evenhuis C, Kuzhiumparambil U, Literakova P, Larkum AWD, Raven JA, Cerveny J, Ralph PJ.  2018.  Effect of carbon limitation on photosynthetic electron transport in Nannochloropsis oculata. Journal of Photochemistry and Photobiology, B -Biology.
Langarica-Fuentes A, Manrubia M, Giles ME, Mitchell S, Daniell TJ.  2018.  Effect of model root exudate on denitrifier community dynamics and activity at different water-filled pore space levels in a fertilised soil. Soil Biology and Biochemistry. 120:70-79.
Cooper LJ, Daly KR, Hallett PD, Naveed M, Koebernick N, Bengough AG, George TS, Roose T.  2018.  The effect of root exudates on rhizosphere water dynamics. Proceeding Royal Society A. 474:ArticleNo.20180149.
Cooper LJ, Daly KR, Hallett PD, Naveed M, Koebernick N, Bengough AG, George TS, Roose T.  2018.  The effect of root exudates on rhizosphere water dynamics. Proceeding Royal Society A. 474:ArticleNo.20180149.
Lilley CJ, Maqbool A, Wu D, Yusup HB, Jones LM, Birch PRJ, Banfield MJ, Urwin PE, Eves-van den Akker S.  2018.  Effector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene. PLoS Genetics. 14:ArticleNo.e1007310.
Berdeni D, Cotton TEA, Daniell TJ, Bidartondo MI, Cameron DD, Evans KL.  2018.  The effects of arbuscular mycorrhizal fungal colonisation on nutrient status, growth, productivity, and canker resistance of apple (Malus pumila). Frontiers in Microbiology. 9:ArticleNo.1461.
Cammarano D, Tian D.  2018.  The effects of projected climate and climate extremes on a winter and summer crop in the southeast. Agricultural and Forest Meteorology. 248:109-118.
Boldrin D, Leung AK, Bengough AG.  2018.  Effects of root dehydration on biomechanical properties of woody roots of Ulex europaeus. Plant and Soil. 431:347-369.
Monsion B, Incarbone M, Hleibieh K, Poignavent V, Ghannam A, Dunoyer P, Daeffler L, Tilsner J, Ritzenthaler C.  2018.  Efficient detection of long dsRNA in vitro and in vivo using the dsRNA binding domain from FHV B2 protein. Frontiers in Plant Science. 9:ArticleNo.70.
Okagaki RJ, Haaning A, Bilgic H, Heinen S, Druka A, Bayer M, Waugh R, Muehlbauer GJ.  2018.  ELIGULUM-A regulates lateral branch and leaf development in barley. Plant Physiology. 176:2750-2760.
Maxwell J, Allen S, Brooks T, Cuttelod A, Dudley N, Fisher J, Langhammer P, Patenaude G, Woodley S.  2018.  Engaging end-users to inform the development of a global standard for the identification of key biodiversity areas. Environmental Science and Policy. 89:273-282.
Trapero-Mozos A, Morris WL, Ducreux LJM, McLean K, Stephens J, Torrance L, Bryan GJ, Hancock RD, Taylor MA.  2018.  Engineering heat tolerance in potato by temperature-dependent expression of a specific allele of HEAT SHOCK COGNATE 70. Plant Biotechnology Journal. 16:197-207.
Hackett C, Milne L, Smith K, Hedley P, Morris J, Simpson C, Preedy K, Graham J.  2018.  Enhancement of Glen Moy x Latham raspberry linkage map using GbS to further understand control of developmental processes leading to fruit ripening. BMC Genetics. 19:ArticleNo.59.
Poggio L, Simonetti E, Gimona A.  2018.  Enhancing the WorldClim data set for national and regional applications. Science of the Total Environment. 625:1628-1643.
Nazaries L, Karunaratne SB, Delgado-Baquerizo M, Campbell CD, Singh BK.  2018.  Environmental drivers of the geographical distribution of methanotrophs: Insights from a national survey. Soil Biology and Biochemistry. 127:264-279.
Moinet GYK, Midwood AJ, Hunt JE, Whitehead D, Hannam KD, Jenkins M, Brewer MJ, Adams MA, Millard P.  2018.  Estimates of rhizosphere priming effects are affected by soil disturbance. Geoderma. 313:1-6.
Sewell F, Ragan I, Indans I, Marczylo T, Stallard N, Griffiths D, Holmes T, Smith P, Horgan G.  2018.  An evaluation of the fixed concentration procedure for assessment of acute inhalation toxicity. Regulatory Toxicology and Pharmacology. 94:22-32.
Stellingwerf JS, Phelan S, Doohan FM, Griffin D, Bourke A, Hutten RCB, Cooke DEL, Kildea S, Mullins E.  2018.  Evidence for selection pressure from resistant potato genotypes but not from fungicide application within a clonal Phytophthora infestans population. Plant Pathology. 67:1528-1538.
Raven JA.  2018.  Evolution and palaeophysiology of the vascular system and other means of long-distance transport. Philosophical Transactions of the Royal Society B - Biological Sciences. 373:ArticleNo.20160497.
Schob C, Brooker RW, Zuppinger-Dingley D.  2018.  Evolution of facilitation requires diverse communities. Nature Ecology and Evolution. 2:1381-1385.
Deveautour C, Donn S, Power S, Bennett AE, Powell JR.  2018.  Experimentally altered rainfall regimes and host root traits affect grassland arbuscular mycorrhizal fungal communities. Molecular Ecology. 27:2152-2163.
Tucker MR, Lou HY, Aubert MK, Wilkinson LG, Little A, Houston K, Pinto SC, Shirley NJ.  2018.  Exploring the role of cell wall-related genes and polysaccharides during plant development. Plants-BASEL. 7:ArticleNo.42.
2017
Sanchez-Baracaldo P, Raven JA, Pisani D, Knoll AH.  2017.  Early photosynthetic eukaryotes inhabited low-salinity habitats. Proceedings of the National Academy of Sciences of the USA. 114:E7737-E7745.
Getnet K, Mekuria W, Langan S, Rivington M, Novo P, Black HIJ.  2017.  Ecosystem-based interventions and farm household welfare in degraded areas: Comparative evidence from Ethiopia. Agricultural Systems. 154:53-62.
Johnson SN, Karley AJ, Gregory PJ, Brennan RM.  2017.  Editorial: Crop traits for defense against pests and disease: durability, breakdown and future prospects. Frontiers in Plant Science. 8:ArticleNo.209.
Mezeli MM, Menezes-Blackburn D, George TS, Giles CD, Neilson R, Haygarth PM.  2017.  Effect of citrate on Aspergillus niger phytase adsorption and catalytic activity in soil. Geoderma. 305:346-353.
Millins C, Gilbert L, Medlock J, Hansford K, Thompson DBA, Biek R.  2017.  Effects of conservation management of landscapes and vertebrate communities on Lyme borreliosis risk in the United Kingdom. Philosophical Transactions of the Royal Society B, Biological Sciences. 372:ArticleNo.20160123.
Dobson G, McDougall GJ, Stewart D, Cubero MA, Karjalainen RO.  2017.  Effects of juice matrix and pasteurization on stability of black currant anthocyanins during storage. Journal of Food Science. 82:44-52.
Moreno-Jimenez E, Sepulveda R, Esteban E, Beesley L.  2017.  Efficiency of organic and mineral based amendments to reduce metal[loid] mobility and uptake (Lolium perenne) from a pyrite-waste contaminated soil. Journal of Geochemical Exploration. 174:46-52.
Ge J.  2017.  Endogenous rise and collapse of housing price An agent-based model of the housing market. Computers Environment and Urban Systems. 62:182-198.
Trapero-Mozos A, Morris WL, Ducreux LJM, McLean K, Stephens J, Torrance L, Bryan GJ, Hancock RD, Taylor MA.  2017.  Engineering heat tolerance in potato by temperature-dependent expression of a specific allele of HEAT SHOCK COGNATE 70. Plant Biotechnology Journal. Published online..
Shuzhong G, Jenkins A, Gao SJ, Lu Y, Li H, Li Y, Ferrier RC, Bailey M, Wang Y, Zhang Y et al..  2017.  Ensuring water resource security in China; the need for advances in evidence-based policy to support sustainable management. Environmental Science and Policy. 75:65-69.
Gu SZ, Jenkins A, Gao SJ, Lu YL, Li H, Li YY, Ferrier RC, Bailey M, Wang YW, Zhang Y et al..  2017.  Ensuring water resource security in China; the need for advances in evidence-based policy to support sustainable management. Environmental Science and Policy. 75:65-69.
Young MW, Mullins E, Squire GR.  2017.  Environmental risk assessment of blight-resistant potato: use of a crop model to quantify nitrogen cycling at scales of the field and cropping system. Environmental Science and Pollution Research. 24:21434-21444.
Maclean JE, Mitchell RJ, Burslem DFRP, Genney D, Hall J, Pakeman RJ.  2017.  The epiphytic bryophyte community of Atlantic oak woodlands shows clear signs of recovery following the removal of invasive Rhododendron ponticum. Biological Conservation. 212:96-104.
Gamado K, Streftaris G, Zachary S.  2017.  Estimation of under-reporting in epidemics using approximations. Journal of Mathematical Biolog. 74:1683-1707.
Kawaharada Y, James EK, Kelly S, Sandal N, Stougaard J.  2017.  The ethylene responsive factor equired for nodulation 1 (ERN1) transcription factor is required for root nodule infection in Lotus japonicus. Molecular Plant-Microbe Interactions.. 30:194-204.
Stutter MI, Dawson JJC, Glendell M, Napier F, Potts JM, Sample J, Vinten AJA, Watson H.  2017.  Evaluating the use of in-situ turbidity measurements to quantify fluvial sediment and phosphorus concentrations and fluxes in agricultural streams. Science of the Total Environment. 607:391-402.
Guo W, Calixto CPG, Tzioutziou N, Lin P, Waugh R, Brown JWS, Zhang R.  2017.  Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size. BMC Systems Biology. 11:ArticleNo.62.
Tian R, Heiden S, Osman WAM, Ardley JA, James EK, Gollagher MM, Tiwari R, Seshadri R, Kyrpides NC, Reeve WG.  2017.  Evolution of a multi-step phosphorelay signal transduction system in Ensifer: recruitment of the sigma factor RpoN and a novel enhances binding protein triggers acid-activated gene expression. Molecular Microbiology. 103:829-844.
White PJ, Bowen HC, Broadley MR, El-Serehy HA, Neugebauer K, Taylor A, Thompson JA, Wright G.  2017.  Evolutionary origins of abnormally large shoot sodium accumulation in non-saline environments within the Caryophyllales. New Phytologist. 214:284-293.
Boevink PC.  2017.  Exchanging missives and missiles: the roles of extracellular vesicles in plant-pathogen interactions. Journal of Experimental Botany. 68:5411-5414.
Perez-Schindler J, Kanhere A, Edwards L, Allwood JW, Dunn WB, Schenk S, Philp A.  2017.  Exercise and high-fat feeding remodel transcript-metabolite interactive networks in mouse skeletal muscle. Scientific Reports. 7:ArticleNo.13485..
Gotts NM, Polhill JG.  2017.  Experiments with a model of domestic energy demand. Journal of Artificial Societies and Social Simulation. 20:ArticleNo.11.
Ge J, Sutherland LA, Polhill JG, Matthews KB, Miller DG, Wardell-Johnson D.  2017.  Exploring factors affecting on-farm renewable energy adoption in Scotland using large-scale microdata. Energy Policy. 107:548-560.
Conniff A, Colley K, Irvine KN.  2017.  Exploring landscape engagement through a participatory touch table approach. Social Sciences. 6
2016
Som S, Buick R, Hagadorn JW, Blake TS, Perreault JM, Harnmeijer J, Catling DC.  2016.  Earth's air pressure 2.7 billion years ago constrained to less than half of modern levels. Nature Geoscience. Published online..
Som S, Buick R, Hagadorn JW, Blake TS, Perreault JM, Harnmeijer J, Catling DC.  2016.  Earth's air pressure 2.7 billion years ago constrained to less than half of modern levels. Nature Geoscience. 9:448-451.
Melville LA, McBean D, Fyfe A, Campbell SJ, Palarea-Albaladejo J, Kenyon F.  2016.  Effect of anthelmintic treatment strategy on strongylid nematode species composition in grazing lambs in Scotland. Parasites and Vectors. 9
Waqar-un-Nisa NB, Rukya Saleem A, Rashid A, Dawson LA.  2016.  Effect of diesel contamination on the physico-chemical characteristics of soil and growth of vetiver grass. Soil and Environment. 35:91-98.
Gray N, Lumsdon DG, Hillier S.  2016.  Effect of pH on the cation exchange capacity of some halloysites nanotubes. Clay Minerals. 51:373-383.
Pan FX, Li YY, Chapman SJ, Yao HY.  2016.  Effect of rice straw application on microbial community and activity in paddy soil under different water status. Environmental Science and Pollution Research. 23:5941-5948.
Pan FX, Li YY, Chapman SJ, Yao HY.  2016.  Effect of rice straw application on microbial community and activity in paddy soil under different water status. Environmental Science and Pollution Research. 23:5941-5948.
Barnes A, Sutherland LA, Toma L, Matthews KB, Thomson S.  2016.  The effect of the Common Agricultural Policy Reforms on intentions towards food production: evidence from livestock farmers. Land Use Policy. 50:548-558.
Mohammad SI, Graham DJ, Melo PC.  2016.  The effect of the Dubai Metro on the value of residential and commercial properties. Journal of Transport and Land Use. 10:263-290.
Milligan G, Cox ES, Alday JG, Santana VM, McAllister HA, Pakeman RJ, Le Duc MG, Marrs RH.  2016.  The effectiveness of old and new strategies for the long-term control of Pteridium aquilinum, an 8-year test. Weed Research. 56:247-257.
Pongrac P, Scheers N, Sandberg AS, Potisek M, Arcon I, Kreft I, Kump P, Vogel-Mikus K.  2016.  The effects of hydrothermal processing and germination on Fe speciation and Fe bioaccessibility to human intestinal Caco-2 cells in Tartary buckwheat. Food Chemistry. 199:782-790.
Verhagen W, Van Teeffelen AJA, Compagnucci AB, Poggio L, Gimona A, Verburg NPHE, Feabreque O, Dawson LA, Demaneche S.  2016.  Effects of landscape configuration on mapping ecosystem service capacity: a review of evidence and a case study in Scotland. Landscape Ecology. 31:1457-1479.
Lin H, Sun WC, Zhang ZL, Chapman SJ, Freitag TE, Fu J, Zhang X, Ma J.  2016.  Effects of manure and mineral fertilization strategies on soil antibiotic resistance gene levels and microbial community in a paddy-upland rotation system. Environmental Pollution. 211:332-337.
Lin H, Sun W, Zhang Z, Chapman SJ, Freitag TE, Fu J, Zhang X, Ma J.  2016.  Effects of manure and mineral fertilization strategies on soil antibiotic resistance gene levels and microbial community in a paddy-upland rotation system. Environmental Pollution. 211:332-337.
Adu MO, Yawson DO, Armah FA, Asare PA, Bennett MJ, Broadley MR, White PJ, Dupuy LX.  2016.  Effects of rooting media on root growth and morphology of Brassica rapa seedlings. South African Journal of Plant and Soil. Published online.
Adu MO, Yawson DO, Armah FA, Asare PA, Bennett MJ, Broadley MR, White PJ, Dupuy LX.  2016.  Effects of rooting media on root growth and morphology of Brassica rapa seedlings. South African Journal of Plant and Soil. 33:219-227.
Abdul-Salam Y, Phimister E.  2016.  Efficiency effects of access to information on small-scale agriculture: empirical evidence from Uganda using stochastic frontier and IRT models. Journal of Agricultural Economics. Published online..
Abdul-Salam Y, Phimister E.  2016.  Efficiency effects of access to information on small-scale agriculture: empirical evidence from Uganda using stochastic frontier and IRT models. Journal of Agricultural Economics. Published online..
Bontemps C, Rogel MA, Wiechmann A, Mussabekova A, Moody S, Simon MF, Moulin L, Elliott GN, Lacercat-Didier L, Dasilva C et al..  2016.  Endemic Mimosa species from Mexico prefer alphaproteobacterial rhizobial symbionts. New Phytologist. 209:319-333.
Lavoie M, Raven JA, Levasseur M.  2016.  Energy cost and putative benefits of cellular mechanisms modulating buoyancy in aflagellate marine phytoplankton. Journal of Phycology. 52:239-251.
Lavoie M, Raven JA, Jones OAH, Qian HF.  2016.  Energy cost of intracellular metal and metalloid detoxification in wild-type eukaryotic phytoplankton. Metallomics. 8:1097-1109.
Villamuelas M, Fernandez N, Albanell E, Galvez-Ceron A, Bartolome J, Mentaberre G, Lopez-Olvera JR, Fernandez-Aguilar X, Colom-Cadena A, Lopez-Martin JM et al..  2016.  The Enhanced Vegetation Index (EVI) as a proxy for diet quality and composition in a mountain ungulate. Ecological Indicators. 61:658-666.
Basso B, Dumont B, Cammarano D, Pezzuolo A, Marinello F, Sartori L.  2016.  Environmental and economic benefits of variable rate nitrogen fertilization in a nitrate vulnerable zone. Science of the Total Environment. 545:227-235.
Campbell R, Freitag S, Bryan GJ, Stewart D, Taylor MA.  2016.  Environmental and gentic factors associated with solanesol accumulation in potato leaves. Frontiers in Plant Science. 7
Lea RG, Byers AS, Sumner RN, Rhind SM, Zhang ZL, Freeman SL, Moxon R, Richardson HM, Green M, Craigon J et al..  2016.  Environmental chemicals impact dog semen quality in vitro and may be associated with a temporal decline in sperm motility and increased cryptorchidism. Scientific Reports. 6
Arts K, Ioris AAR, Macleod CJA, Han XW, Sripada SG, Braga JRZ, van der Wal R.  2016.  Environmental communication in the Information Age: Institutional barriers and opportunities in the provision of river data to the general public. Environmental Science and Policy. 55:47-53.
Wylie CE, Shaw DJ, Fordyce FM, Lilly A, Pirie RS, McGorum BC.  2016.  Equine grass sickness in Scotland: a case control study of environmental geochemical risk factors. Equine Veterinary Journal. 48:779-785.
Li X, Toma Y, Yeluripati J, Iwasaki S, Bellingrath-Kimura SD, Jones EO, Hatano R.  2016.  Estimating agro-ecosystem carbon balance of northern Japan, and comparing the change in carbon stock by soil inventory and net biome productivity. Science of the Total Environment. 554:293-302.
Zhao G, Hoffman H, Yeluripati J, Xenia S, Nendal C, Coucheney E, Kuhnert M, Tao F, Constantin J, Raynal H et al..  2016.  Evaluating the precision of eight spatial sampling schemes in estimating regional means of simulated yield for two crops. Environmental Modelling and Software. 80:100-112.
Nilsson C, Aradottir A, Hagen D, Halldorsson G, Hoegh K, Mitchell RJ, Raulund-Rasmussen K, Svavarsdottir K, Tolvanen A, Wilson SD.  2016.  Evaluating the process of ecological restoration. Restoration Ecology. 21:ArticleNo.41..
Nilsson C, Aradottir A, Hagen D, Halldorsson G, Hoegh K, Mitchell RJ, Raulund-Rasmussen K, Svavarsdottir K, Tolvanen A, Wilson SD.  2016.  Evaluating the process of ecological restoration. Ecology and Society. 21:ArticleNo.41..
Painter B, Irvine KN, Waskett RK, Mardaljevic J.  2016.  Evaluation of a mixed method approach for studying user interaction with novel building control technology. Energies. 9:215.
Zhang Z, Troldborg M, Yates K, Osprey M, Kerr C, Hallett PD, Baggaley N, Rhind SM, Dawson JJC, Hough RL.  2016.  Evaluation of spot and passive sampling for monitoring, flux estimation and risk assessment of pesticides within the constraints of a typical regulatory monitoring scheme. Science of the Total Environment. 569-570:1369-1379.
Vicente CSL, Nascimento FX, Barbosa P, Ke HM, Tsai IJ, Hirao T, Cock PJA, Kikuchi T, Hasegawa K, Mota M.  2016.  Evidence for an opportunistic and endophytic lifestyle of the Bursaphelenchus xylophilus-associated bacteria Serratia marcescens PWN146 isolated from wilting Pinus pinaster. Microbial Ecology. 72:669-681.
Eriksson AK, Hillier S, Hesterberg D, Klysubun W, Ulen B, Gustafsson PG.  2016.  Evolution of phosphorus speciation with depth in an agricultural soil profile. Geoderma. 280:29-37.
Russell J, Mascher M, Dawson IK, Kyriakidis S, Calixto C, Freund F, Bayer M, Milne I, Marshall-Griffiths T, Heinen S et al..  2016.  Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation. Nature Genetics. 49:1024-1030.
Newton AC.  2016.  Exploitation of diversity - the key to disease tolerance in crops? Frontiers in Plant Science. 7:665.
Newton AC.  2016.  Exploitation of diversity within cops - the key to disease tolerance? Frontiers in Plant Science. 7:ArticleNo.665.
Karley AJ, Mitchell C, Brookes C, McNicol J, O'Neill T, Roberts H, Graham J, Johnson SN.  2016.  Exploiting physical defence traits for crop protection: leaf trichomes of Rubus idaeus have deterrent effects on spider mites but not aphids. Annals of Applied Biology. 168:159-172.
Ge J, Polhill JG.  2016.  Exploring the combined effect of factors influencing commuting patterns and CO2 emissions in Aberdeen using an agent-based model. Journal of Artificial Societies and Social Simulation. 19:ArticleNo.11.
Nijnik M, Nijnik, M.; Mather A, Brown I.  2016.  Exploring the linkages between multi-functional forestry goals and the legacy of spruce plantations in Scotland. Canadian Journal of Forest Research. Published online..
Nijnik M, Nijnik, M.; Mather A, Brown I.  2016.  Exploring the linkages between multi-functional forestry goals and the legacy of spruce plantations in Scotland. Canadian Journal of Forest Research. 46:1247-1254.
2015
Holden NJ, Jackson RW, Schikora A.  2015.  Editorial on plants as alternative hosts for human and animal pathogens. Frontiers in Microbiology. 6
Deng WN, Hallett PD, Jeng DS, Squire GR, Toorop PE, Iannetta PPM.  2015.  The effect of natural seed coatings of Capsella bursa-pastoris L. Medik. (shepherd's purse) on soil-water retention, stability and hydraulic conductivity. Plant and Soil. 387:167-176.
Loades KW, Bengough AG, Bransby MF, Hallett PD.  2015.  Effect of root age on the biomechanics of seminal and nodal roots of barley (Hordeum vulgare L.) in contrasting soil environments. Plant and Soil. 395:253-261.
Wang J, Chapman SJ, Yao H.  2015.  The effect of storage on microbial activity and community structure of drained and flooded paddy soils. Journal of Soils and Sediments. 15:880-889.
Phillips D, Jenkins G, Macaulay M, Nibau C, Wnetrzak J, Fallding D, Colas I, Oakey H, Waugh R, Ramsay L.  2015.  The effect of temperature on the male and female recombination landscape of barley. New Phytologist. 208:421-429.
Zhao G, Hoffmann H, van Bussel LGJ, Enders A, Specka X, Sosa C, Yeluripati JB, Tao FL, Constantin J, Raynal H et al..  2015.  Effect of weather data aggregation on regional crop simulation for different crops, production conditions, and response variables. Climate Research. 65:141-157.
Cerekovic N, Jarret D, Pagter M, Cullen DW, Morris JM, Hedley PE, Brennan R, Petersen KK.  2015.  The effects of drought stress on leaf gene expression during flowering in blackcurrant (Ribes nigrum L.). European Journal of Horticultural Science. 80:39-46.
Kikvidze Z, Brooker RW, Butterfield BJ, Callaway RM, Cavieres LA, Cook BJ, Lortie CJ, Michalet R, Pugnaire FI, Xiao S et al..  2015.  The effects of foundation species on community assembly: a global study on alpine cushion plant communities. Ecology. 96:2064-2069.
Fang SB, Cammarano D, Zhou GS, Tan KY, Ren SX.  2015.  Effects of increased day and night temperature with supplemental infrared heating on winter wheat growth in North China. European Journal of Agronomy. 64:67-77.
Muller FLL, Chang KC, Lee CL, Chapman SJ.  2015.  Effects of temperature, rainfall and conifer felling practices on the surface water chemistry of northern peatlands. Biogeochemistry. 126:343-362.
Barzman M, Barberi P, Birch ANE, Boonekamp P, Dachbrodt-Saaydeh S, Graf B, Hommel B, Jensen JE, Kiss J, Kudsk P et al..  2015.  Eight principles of integrated pest management. Agronomy for Sustainable Development. 35:1199-1215.
Raven JA, Ralph PJ.  2015.  Enhanced biofuel production using optimality, pathway modification and waste minimization. Journal of Applied Phycology. 27:1-31.
Moynihan EL, Richards KG, Brennan FP, Tyrrel SF, Ritz K.  2015.  Enteropathogen survival in soil from different land-uses is predominantly regulated by microbial community composition. Applied Soil Ecology. 89:76-84.
Parkinson N, Pritchard L, Bryant R, Toth IK, Elphinstone J.  2015.  Epidemiology of Dickeya dianthicola and Dickeya solani in ornamental hosts and potato studied using variable number tandem repeat analysis. European Journal of Plant Pathology. 141:63-70.
Wylie CE, Shaw DJ, Fordyce FM, Lilly A, Pirie S, McGorum BC.  2015.  Equine grass sickness in Scotland: a case control study of environmental geochemical risk factors. Equine Veterinary Journal. Published online..
Sang N, Hagerhall C, Ode A.  2015.  The Euler character: a new type of visual landscape metric? Environment and Planning B. 42:110-132.
Brown SM, Klaffenbock M, Nevison IM, Lawrence AB.  2015.  Evidence for litter differences in play behaviour in pre-weaned pigs. Applied Animal Behaviour Science. 172:17-25.
Pourkheirandish M, Hensel G, Kilian B, Senthil N, Chen G, Sameri M, Azhaguvel P, Sakuma S, Dhanagond S, Sharma R et al..  2015.  Evolution of the seed dispersal system in barley. Cell. 162:527-539.
Schwerdt JG, MacKenzie K, Wright F, Oehme D, Wagner JM, Harvey AJ, Shirley NJ, Burton RA, Schreiber M, Halpin C et al..  2015.  Evolutionary dynamics of the cellulose synthase gene superfamily in grasses. Plant Physiology. 168:968-983.
Calixto CPG, Waugh R, Brown JWS.  2015.  Evolutionary relationships among barley and Arabidopsis core circadian clock and clock-associated genes. Journal of Molecular Evolution. 80:108-119.
Balfour NJ, Gandy S, Ratnieks FLW.  2015.  Exploitative competition alters bee foraging and flower choice. Behavioral Ecology and Sociobiology. 69:1731-1738.
Farmer J, Currie M, Kenny A, Munoz SA.  2015.  An exploration of the longer-term impacts of community participation in rural health services design. Social Science and Medicine. 141:64-71.
Bizikova L, Nijnik M, Nijnik, M.; Mather A.  2015.  Exploring institutional changes in agriculture to inform adaptation planning to climate change in transition countries. Mitigation and Adaptation Strategies for Global Change. 20:1385-1406.
Polhill JG.  2015.  Extracting OWL ontologies from agent-based models: a netlogo extension. Journal of Artificial Societies and Social Simulation. 18:15.
2014
Herbert LJ, Vali L, Hoyle DV, Innocent G, McKendrick IJ, Pearce MC, Mellor D, Porphyre T, Locking M, Allison L et al..  2014.  E-coli O157 on Scottish cattle farms: Evidence of local spread and persistence using repeat cross-sectional data. BMC Veterinary Research. 10
Devereux G, Tagiyeva N, Turner S, Ayres JG, Seaton A, Hudson G, Hough RL, Campbell CD, Shand CA.  2014.  Early-life residential exposure to soil components in rural areas and childhood respiratory health and allergy. Science of the Total Environment. 466-467:338-344.
Howland BWA, Stojanovic D, Gordon IJ, Manning AD, Lindenmayer DB.  2014.  Eaten out of house and home: impacts of grazing on ground-dwelling reptiles in Australian grasslands and grassy woodlands. PLoS ONE. 9:e105966.
Stokes A, Douglas GB, Fourcaud T, Giadrossich F, Gillies C, Hubble T, Kim JH, Loades KW, Mao Z, McIvor IR et al..  2014.  Ecological mitigation of hillsope instability: ten key issues facing researchers and practitioners. Plant and Soil. 377:1-23.
Shepherd LVT, Hackett CA, Alexander CJ, Sungurtas JA, Pont SDA, Stewart D, McNicol JW, Wilcockson SJ, Leifert C, Davies HV.  2014.  Effect of agricultural production systems on the potato metabolome. Metabolomics. 10:212-224.
Gimona A, Poggio L, Aalders I, Aitkenhead M.  2014.  The effect of image compression on synthetic PROBA-V images. International Journal of Remote Sensing. 35:2639-2653.
Gotame TP, Cullen DW, Graham J, Hedley P, Smith K, Morris J, Andersen L, Petersen KK.  2014.  Effect of short-term exposure to high-temperature on total gene expression in the leaves of four raspberry (Rubus idaeus L.) cultivars. Journal of Horticultural Science and Biotechnology. 89:532-541.
Mazur SP, Sonsteby A, Nes A, Wold AB, Foito A, Freitag S, Verrall S, Stewart D, Heide OM.  2014.  Effects of Post-Flowering Environmental Variation along an Altitudinal Gradient on Chemical Composition of 'Glen Ample' Red Raspberry (Rubus idaeus L.). European Journal of Horticultural Science. 79:267-277.
Stockan JA, Baird J, Langan SJ, Young MR, Iason GR.  2014.  Effects of riparian buffer strips on ground beetles (Coleoptera, Carabidae) within an agricultural landscape. Insect Conservation and Diversity. 7:172-184.
Man JG, Yu JS, White PJ, Gu SB, Zhang YL, Guo QF, Shi Y, Wang D.  2014.  Effects of supplemental irrigation with micro-sprinkling hoses on water distribution in soil and grain yield of winter wheat. Field Crops Research. 161:26-37.
Hentley WT, Vanbergen AJ, Hails RS, Jones TH, Johnson SN.  2014.  Elevated atmospheric CO2 impairs aphid escape responses to predators and conspecific alarm signals. Journal of Chemical Ecology. 40:1110-1114.
Jones J, Witek K, Verweij W, Jupe F, Cooke DEL, Dorling S, Tomlinson L, Smoker M, Perkins S, Foster S.  2014.  Elevating crop disease resistance with cloned genes. Philosophical Transactions of the Royal Society B, Biological Sciences.. 369:ArticleNo20130087.
Raven JA, Beardall J, Giordano M.  2014.  Energy costs of carbon dioxide concentrating mechanisms in aquatic organisms. Photosynthesis Research. 121:111-124.
Gordon IJ, Evans DM, Garner TWJ, Katzner T, Gompper ME, Altwegg R, Branch TA, Johnson JA, Pettorelli N.  2014.  Enhancing communication between conservation biologists and conservation practitioners: Letter from the Conservation Front Line. Animal Conservation. 17:1-2.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.