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Cock PJA, Gruning BA, Paszkiewicz K, Pritchard L.  2013.  Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology. Peer J. 1:e167.
Coucheney E, Daniell TJ, Chenu C, Nunan N.  2008.  Gas chromatographic metabolic profiling: A sensitive tool for functional microbial ecology. Journal of Microbiological Methods. 75:491-500. Abstract
Tamburic B, Evenhuis CR, Suggett DJ, Larkum AWD, Raven JA, Ralph PJ.  2015.  Gas transfer controls carbon limitation during biomass production by marine microalgae. Chemsuschem. 8:2727-2736.
Getachew AM, Innocent G, Trawford AF, Reid SWJ, Love S.  2012.  Gasterophilosis: a major cause of rectal prolapse in working donkeys in Ethiopia. Tropical Animal Health and Production. 44:757-762.
Malosetti M, van Eeuwijk FA, Boer MP, Casas AM, Elia M, Moralejo M, Bhat PR, Ramsay L, Molina-Cano J.  2011.  Gene and QTL detection in a three-way barley cross under selection by a mixed model with kinship information using SNPs. Theoretical and Applied Genetics. 122:1605-1616.
Hammond JP, Broadley MR, Bowen HC, Spracklen WP, Hayden R, White PJ.  2011.  Gene expression changes in phosphorus deficient potato (Solanum tuberosum L.) leaves and the potential for diagnostic gene expression markers. PLoS ONE. 6:e24606.
Judelson HS, Ah Fong AMV, Aux G, Avrova AO, Bruce CR, Cakir C, da Cunha L, Grenville-Briggs LJ, Latijnhouwers M, Ligterink W et al..  2008.  Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome. Molecular Plant-Microbe Interaction. 21:433-447. Abstract
Potokina E, Druka A, Luo ZW, Wise R, Waugh R, Kearsey MJ.  2008.  Gene expression quantitative trait locus analysis of 16,000 barley genes reveals a complex pattern of genome-wide transcriptional regulation. The Plant Journal. 53:90-101. Abstract
Halpin C.  2005.  Gene stacking in transgenic plants - the challenge for 21st century plant biotechnology. Plant Biotechnology Journal. 3:141-155. Abstract
Jing R, Johnson R, Seres A, Kiss G, Ambrose MJ, Knox MR, Ellis THN, Flavell AJ.  2007.  Gene-based sequence diversity analysis of field pea (Pisum). Genetics. 177:2263-2275. Abstract
Milner SG, Jost M, Taketa S, Mazon ER, Himmelbach A, Oppermann M, Weise S, Knupffer H, Basterrechea M, Konig P et al..  2019.  Genebank genomics highlights the diversity of a global barley collection. Nature Genetics.
Milner SG, Jost M, Taketa S, Mazon ER, Himmelbach A, Oppermann M, Weise S, Knupffer H, Basterrechea M, Konig P et al..  2019.  Genebank genomics highlights the diversity of a global barley collection. Nature Genetics.
Speed JDM, Austrheim G, Hester AJ, Meisingset E, Mysterud A, Tremblay J, Oien A, Solberg E.  2014.  General and specific responses of understory vegetation to cervic herbivory across a range of boreal forests. Oikos.. 123:1270-1280.
Pritchard L, Corne D, Kell D, Rowland J, Winson M.  2005.  A general model of error-prone PCR. Journal of Theoretical Biology. 234:497-509. Abstract
Zhang X, Johnson SN, Crawford JW, Gregory PJ, Young IM.  2007.  A general random walk model for the leptokurtic distribution of organism movement: theory and application. Ecological Modelling. 200:79-88. Abstract
Rowland LJ, Bell D, Alkharouf N, Bassil N, Drummond F, Beers L, Buck E, Finn C, Graham J, McCallum S et al..  2012.  Generating genomic tools for blueberry improvement. International Journal of Fruit Science. 12:276-287.
Flanigan S, Blackstock KL, Hunter C.  2015.  Generating public and private benefits through understanding what drives different types of agritourism. Journal of Rural Studies. 41:129-141.
Zakri AM, Ziegler A, Torrance L, Fischer R, Commandeur U.  2010.  Generation and characterisation of a scFv against recombinant coat protein of the geminivirus Tomato leaf curl New Delhi virus. Archives of Virology. 155:335-342.
Hein I, McLean K, Chalhoub B, Bryan GJ.  2007.  Generation and screening of a BAC library from a diploid potato clone to unravel durable late blight resistance on linkage group IV. International Journal of Plant Genomics. :-51421. Abstract
O' Lochlainn SE, Fray RG, Hammond JP, King GJ, White PJ, Young SD, Broadley MR.  2011.  Generation of nonvernal-obligate, faster-cycling Noccaea caerulescens lines through fast neutron mutagenesis. New Phytologist. 189:409-414.
Kloosterman B, De Koeyer D, Griffiths R, Flinn B, Steuernagel B, Scholz U, Sonnewald S, Sonnewald U, Bryan GJ, Prat S et al..  2008.  Genes driving potato tuber initiation and growth: identification based on transcriptional changes using the POCI array. Functional & Integrative Genomics. 8:329-340. Abstract
White PJ, Hammond JP, King GJ, Bowen HC, Hayden RM, Meacham MC, Spracklen WP, Broadley MR.  2010.  Genetic analysis of potassium use efficiency in Brassica oleracea. Annals of Botany. 105:1199-1210.
McCallum S, Woodhead M, Hackett CA, Kassim A, Paterson A, Graham J.  2010.  Genetic and environmental effects influencing fruit colour and QTL analysis in raspberry. Theoretical and Applied Genetics. 121:611-627.
Josuttis M, Verrall S, Stewart D, Kruger E, McDougall GJ.  2013.  Genetic and environmental effects on tannin composition in strawberry (Fragaria x ananassa) cultivars grown in different European locations. Journal of Agricultural and Food Chemistry. 61:790-800.
Graham J, Hackett CA, Smith K, Karley A, Mitchell C, Roberts H, O'Neill T.  2014.  Genetic and environmental regulation of plant architectural traits and opportunities for pest and disease control in raspberry. Annals of Applied Biology. 165:318-328.
Gosney BJ, Oreilly-Wapstra JM, Forster LG, Barbour RC, Iason GR, Potts BM.  2014.  Genetic and ontogenetic variation in an endangered tree structures dependent arthropod and fungal communities. PLoS ONE. 9:e114132.
Alimi NA, Bink MCAM, Dieleman JA, Nicolai M, Wubs M, Heuvelink E, Magan J, Voorrips RE, Jansen J, Rodrigues PC et al..  2013.  Genetic and QTL analyses of yield and a set of physiological traits in pepper. Euphytica. 190:181-201.
Looseley M, Newton AC, Atkins SD, Fitt BDL, Fraaije BA, Thomas WTB, Keith R, Macaulay M, Lynott JS, Harrap D.  2012.  Genetic basis of control of Rhynchosporium secalis infection and symptom expression in barley. Euphytica. 184:47-56.
Farre A, Cuadrado A, Lacasa-Benito I, Cistue L, Schubert I, Comadran J, Jansen J, Romagosa I.  2012.  Genetic characterization of a reciprocal translocation present in a widely grown barley variety. Molecular Breeding. 30:1109-1119.
McNally RR, Toth IK, Cock PJA, Pritchard L, Hedley PE, Morris JA, Zhao YF, Sundin GW.  2012.  Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. Molecular Plant Pathology. 13:160-173.
Druka A, Franckowiak JD, Lundqvist U, Bonar N, Alexander J, Houston K, Radovic S, Shahinnia F, Vendramin V, Morgante M et al..  2011.  Genetic dissection of barley morphology and development. Plant Physiology. 155:617-627.
De la Fuente Cantó C, Russell J, Hackett CA, Booth A, Dancey S, George TS, Waugh R.  2018.  Genetic dissection of quantitative and qualitative traits using a minimum set of barley recombinant chromosome substitution lines. BMC Plant Biology. 18:ArticleNo.340.
Martin-Sanz A, Caminero C, Jing R, Flavell AJ, de la Vega MP.  2011.  Genetic diversity among Spanish pea (Pisum sativum L.) landraces, pea cultivars and the world Pisum sp. core collection assessed by retrotransposon-based insertion polymorphisms (RBIPs). Spanish Journal of Agricultural Research. 9:166-178.
Sanz AM, Gonzalez SG, Syed NH, Suso MJ, Salda CC, Flavell AJ.  2007.  Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers. Molecular Genetics and Genomics. 278:433-441. Abstract
Russell J, van Zonneveld M, Dawson IK, Booth A, Waugh R, Steffenson B.  2014.  Genetic diversity and ecological niche modelling of wild barley: refugia, large-scale post-LGM range expansion and limited mid-future climate threats? PLoS ONE. 9:e86021.
Jing RC, Vershinin AV, Grzebyta J, Shaw P, Smykal P, Marshall DF, Ambrose MJ, Ellis THN, Flavell AJ.  2010.  The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis. BMC Evolutionary Biology. 10:-44.
Marcotuli I, Houston K, Schwerdt JG, Waugh R, Fincher GB, Burton RA, Blanco A, Gadaleta A.  2016.  Genetic diversity and genome wide association study of beta-glucan content in tetraploid wheat grains. PLoS ONE. 11:e0152590.
Smykal P, Hybl M, Corander J, Jarkovsky J, Flavell AJ, Griga M.  2008.  Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis. Theoretical and Applied Genetics. 117:413-424.
Perez-Espona S, Perez-Barberia FJ, Goodall-Copestake WP, Jiggins CD, Gordon IJ, Pemberton JM.  2009.  Genetic diversity and population structure of Scottish Highland red deer (Cervus elaphus) populations: a mitochondrial survey. Heredity. 102(2):199-210.
Yannic G, Pellissier L, Ortego J, Lecomte N, Couturier S, Cuyler C, Dussault C, Hundertmark KJ, Irvine RJ, Jenkins DA et al..  2013.  Genetic diversity in caribou linked to past and future climate change. Nature Climate Change. 4:132-137.
Jing R, Ambrose MA, Knox MR, Smykal P, Hybl M, Ramos A, Caminero C, Burstin J, Duc G, van Soest LJM et al..  2012.  Genetic diversity in European Pisum germplasm collections. Theoretical and Applied Genetics. 125:367-380.
Cooke DEL, Jung T, Williams NA, Schubert R, Osswald W, Duncan JM.  2005.  Genetic diversity of European populations of the oak fine-root pathogen Phytophthora quercina. Forest Pathology. 35:57-70. Abstract
Chesnay C, Kumar A, Pearce SR.  2007.  Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract
Lin H, Cai ZY, Zhang T, Su J, Thirgood, S.J.; Redpath S.  2008.  Genetic diversity of the subterranean Gansu zokor in a semi-natural landscape. Journal of Zoology. 275(2):153-159.
Pelser PB, Abbott RJ, Comes HP, Milton JJ, Moller M, Looseley ME, Cron GV, Barcelona JF, Kennedy AH, Watson LE et al..  2012.  The genetic ghost of an invasion past: colonization and extinction revealed by historical hybridisation in Senecio. Molecular Ecology. 21:369-387.
Velmala SM, Rajala T, Haapanen M, Taylor AFS, Pennanen T.  2013.  Genetic host-tree effects on the ectomycorrhizal community and root characteristics of Norway spruce. Mycorrhiza. 23:21-33.
Senior JK, Iason GR, Gundale M, Whitham TG, Axelsson EP.  2019.  Genetic increases in growth do not lead to trade-offs with ecologically important litter and fine root traits in Norway spruce. Forest Ecology and Management. 446:54-62.
Tomaszewski C, Byrne S, Foito A, Kildea S, Kopecky D, Dolezel J, Heslop-Harrison JS, Stewart D, Barth S.  2012.  Genetic linkage mapping in an F2 perennial ryegrass population saturated with DArT markers. Plant Breeding. 131:345-349.
Massa AN, Manrique-Carpintero NC, Coombs JJ, Zarka DG, Boone AE, Kirk WW, Hackett CA, Bryan GJ, Douches DS.  2015.  Genetic linkage mapping of economically important traits in cultivated tetraploid potato (Solanum tuberosum L.). G3-Genes Genomes Genetics. 5:2357-2364.
Looseley ME, Keith R, Guy D, Barral-Baron G, Thirugnanasambandam A, Harrap D, Werner P, Newton AC.  2014.  Genetic mapping of resistance to Rhynchosporium commune and characterisation of early infection in a winter barley mapping population. Euphytica. Published online.
Looseley ME, Keith R, Guy D, Barral-Baron G, Thirugnanasambandam A, Harrap D, Werner P, Newton AC.  2015.  Genetic mapping of resistance to Rhynchosporium commune and characterisation of early infection in a winter barley mapping population. Euphytica. 203:337-347.
Bradshaw JE.  2009.  A genetic perspective on yield plateau in potato (Review). Potato Journal (Indian). 36:79-94.
M C, Crosley LK, Nicol F, Beckett GJ, Howie AF, Hill KE, Horgan GW, Mathers JC, Arthur JR, Hesketh JE.  2007.  Genetic polymorphisms in the human selenoprotein P gene determine the response of selenoprotein markers to selenium supplementation in a gender-specific manner (the SELGEN study). FASEB Journal. 21:3063-3074. Abstract
Denoys-Rothan B, Chartier P, Petit A, Gordon S, Graham J, Dolan A, Hofer M, Faedi W, Malteni M, Baruzzi G et al..  2008.  Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.
Liu HJ, Sandal N, Andersen KR, James EK, Stougaard J, Kelly S, Kawaharada Y.  2018.  A genetic screen for plant mutants with altered nodulation phenotypes in response to rhizobial glycan mutants. New Phytologist. 220:526-538.
Begg GS, Wishart J, Young MW, Squire GR, Iannetta PPM.  2012.  Genetic structure among arable populations of Capsella bursa-pastoris L. is linked to functional traits and in-field conditions. Ecography. 35:446-457.
Obert B, Middlefell-Williams J, Millam S.  2008.  Genetic transformation of barley microspores using anther bombardment. Biotechnology Letters. 30:945-949. Abstract
Sait M, Clark EM, Wheelhouse N, Spalding L, Livingstone M, Sachse K, Markey BK, Magnino S, Siarkou VI, Vretou E et al..  2011.  Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. Veterinary Microbiology. 151:284-290.
Lin G, Ci HX, Thirgood, S.J.; Redpath S, Zhang TZ, Su JP.  2010.  Genetic variation and molecular evolution of endangered Kozlov's pika (Ochotona Koslowi Buchner) based on mitochondrial cytochrome B gene. Polish Journal of Ecology. 58(3):563-568.
Graham NS, Hammond JP, Lysenko A, Mayes S, O'Lochlainn S, Blasco B, Bowen HC, Rawlings CJ, Rios JJ, Welham S et al..  2014.  Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs. The Plant Cell. 26:2818-2830.
Hopkins DW, Webster EA, Boerjan W, Pilate G, Halpin C.  2007.  Genetically modified lignin belowground. Nature Biotechnology. 25:168-169. Abstract
Love AJ, Makarov VV, Sinitsyna OV, Shaw J, Yaminsky IV, Kalinina NO, Taliansky ME.  2015.  A genetically modified tobacco mosaic virus that can produce gold nanoparticles from a metal salt precursor. Frontiers in Plant Science. 6
MacFarlane SA, McGavin WJ.  2009.  Genome activation by Raspberry bushy dwarf virus coat protein. Journal of General Virology. 90:747-753.
Cooke DEL, Cano LM, Raffaele S, Bain RA, Cooke LR, Etherington GJ, Deahl KL, Farrer RA, Gilroy EM, Goss EM et al..  2012.  Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathogens. 8:e1002940.
Vicente CSL, Nascimento FX, Ikuyo Y, Cock PJA, Mota M, Hasegawa K.  2016.  The genome and genetics of a high oxidative stress tolerant Serratia sp LCN16 isolated from the plant parasitic nematode Bursaphelenchus xylophilus. BMC Genomics. 17:ArticleNo.301.
Cotton JA, Lilley CJ, Jones LM, Kikuchi T, Reid AJ, Thorpe P, Tsai IJ, Beasley H, Blok VC, Cock PJA et al..  2014.  The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode. Genome Biology. 15
Das Dangol S, Barakate A, Stephens J, Caliskan ME, Bakhsh A.  2019.  Genome editing of potato using CRISPR technologies: current development and future prospective. Plant Cell, Tissue and Organ Culture. 139:403-416.
Kikuchi T, Eves-van den Akker S, Jones JT.  2017.  Genome evolution of plant-parasitic nematodes. Annual Review of Phytopathology. 55:333-354.
Eves-van den Akker S, Laetsch DR, Thorpe P, Lilley CJ, Danchin EGJ, Da Rocha M, Rancurel C, Holroyd NE, Cotton JA, Szitenberg A et al..  2016.  The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence. Genome Biology. 17
Haas BJ, Kamoun S, Zody MC, Jiang RHY, Handsaker RE, Cano LM, Grabherr M, Kodira CD, Raffaele S, Torto-Alalibo T et al..  2009.  Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
Xu X, Pan SK, Cheng SF, Zhang B, Mu DS, Ni PX, Zhang GY, Yang S, Li RQ, Wang J et al..  2011.  Genome sequence and analysis of the tuber crop potato. Nature. 475:189-195.
De Maayer P, Chan WY, Venter SN, Toth IK, Birch PRJ, Joubert F, Coutinho TA.  2010.  Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EGJ, Deleury E, Perfus-Barbeoch L, Anthouard V, Artiguenave F, Blok VC et al..  2008.  Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnology. 26:909-915.
Richards S, Gibbs RA, Gerardo NM, Moran N, Nakabachi A, Stern D, Tagu D, Wilson ACC, Muzny D, Kovar C et al..  2010.  Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
Glasner JD, Yang C, Reverchon S, Hugouvieux-Cotte-Pattat N, Condemine G, Bohin JP, Van GF, Yang S, Franza T, Expert D et al..  2011.  Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Journal of Bacteriology. 193:2076-2077.
Vetukuri RR, Kushwaha S, Sen D, Whisson SC, Lamour KH, Grenville-Briggs L.  2018.  Genome sequence resource for the oomycete taro pathogen Phytophthora colocasiae. Molecular Plant-Microbe Interactions. 31:903-905.
Lamour KH, Mudge J, Gobena D, Hurtado-Gonzales OP, Schmutz J, Kuo A, Miller NA, Rice BJ, Raffaele S, Cano LM et al..  2012.  Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen phytophthora capsici. Molecular Plant-Microbe Interactions. 25:1350-1360.
Marcotuli I, Houston K, Waugh R, Fincher GB, Burton RA, Blanco A, Gadaleta A.  2015.  Genome wide association mapping for Arabinoxylan content in a collection of tetraploid wheats. PLoS ONE. 10:e0132787.
Houston K, Russell J, Schreiber M, Halpin C, Oakey H, Washington JM, Booth A, Shirley N, Burton RA, Fincher GB et al..  2014.  A genome wide association scan for (1,3;1,4)-beta-glucan content in the grain of contemporary 2-row Spring and Winter barleys. BMC Genomics. 15
Hassan AS, Houston K, Lahnstein J, Shirley N, Schwerdt JG, Gidley MJ, Waugh R, Little A, Burton RA.  2017.  A genome wide association study of arabinoxylan content in 2-row spring barley grain. PLoS ONE. 12:e0182537.
Rostoks N, Mudie S, Cardle L, Russell JR, Ramsay L, Booth A, Svensson JT, Wanamaker SI, Walia H, Rodriguez EM et al..  2005.  Genome wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Molecular Genetics and Genomics. Abstract
Ho T, Cardle L, Xu X, Bayer M, Prince SJ, Mutava RN, Marshall DF, Syed NH.  2014.  Genome-Tagged Amplification (GTA): a PCR-based method to prepare sample-tagged amplicons from hundreds of individuals for next generation sequencing. Molecular Breeding. 34:977-988.
Rio-Alvarez I, Rodriguez-Herva JJ, Cuartas-Lanza R, Toth IK, Pritchard L, Rodriguez-Palenzuela P, Lopez-Solanilla E.  2012.  Genome-wide analysis of the response of Dickeya dadantii 3937 to plant antimicrobial peptides. Molecular Plant-Microbe Interactions. 25:523-533.
Xu X, Sharma R, Tondelli A, Russell J, Comadran J, Schnaithmann F, Pillen K, Kilian B, Cattivelli L, Thomas WTB et al..  2018.  Genome-wide association analysis of grain yield-associated traits in a Pan-European barley cultivar collection. Plant Genome. 11:ArticleNo.UNSP170073.
Abdel-Ghani AH, Sharma R, Wabila C, Dhanagond S, Owais SJ, Duwayri MA, Al-Dalain SA, Klukas C, Chen D, Lübberstedt T et al..  2019.  Genome-wide association mapping in a diverse spring barley collection reveals the presence of QTL hotspots and candidate genes for root and shoot architecture traits at seedling stage. BMC Plant Biology. 18:ArticleNo216.
Wang M, Jiang N, Jia T, Leach L, Cockram J, Waugh R, Ramsay L, Thomas WTB, Luo Z.  2012.  Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars. Theoretical and Applied Genetics. 124:233-246.
Visioni A, Tondelli A, Francia E, Pswarayi A, Malosetti M, Russell J, Thomas W, Waugh R, Pecchioni N, Romagosa I et al..  2013.  Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.). BMC Genomics. 14:424.
Cockram J, White J, Zuluaga D, Smith D, Comadran J, Macaulay M, Luo ZW, Kearsey MJ, Werner P, Harrap D et al..  2010.  Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.
Sharma R, Draicchio F, Bull H, Herzig P, Maurer A, Pillen K, Thomas WTB, Flavell AJ.  2018.  Genome-wide association of yield traits in a nested association mapping population of barley reveals new gene diversity for future breeding. Authors. Journal of Experimental Botany. 69:3811-3822.
Houston K, Burton RA, Sznajder B, Rafalski AJ, Dhugga KS, Mather DE, Taylor J, Steffenson BJ, Waugh R, Fincher GB.  2015.  A genome-wide association study for culm cellulose content in barley reveals candidate genes co-expressed with members of the cellulose synthase a gene family. PLoS ONE. 10:e0130890.
Matros A, Houston K, Tucker MR, Schreiber M, Berger B, Aubert MK, Wilkinson LG, Witzel K, Waugh R, Seiffert U et al..  2021.  Genome-wide association study reveals the genetic complexity of fructan accumulation patterns in barley grain. Journal of Experimental Botany. 72:2383-2402.
Wang DP, Qi MS, Calla B, Korban SS, Clough SJ, Cock PJA, Sundin GW, Toth IK, Zhao YF.  2012.  Genome-wide identification of genes regulated by the Rcs phosphorelay system in Erwinia amylovora. Molecular Plant-Microbe Interactions. 25:6-17.
Yang S, Peng Q, Zhang Q, Zou L, Li Y, Robert C, Pritchard L, Liu H, Hovey R, Wang Q et al..  2010.  Genome-wide identifiction of HrpL-regulated genes in the necrotrophic phytopathogen Dickeya dadantii 3937. PLoS One. 5:-e13472.
Campbell R, Pont SDA, Morris JA, McKenzie G, Sharma SK, Hedley PE, Ramsay G, Bryan GJ, Taylor MA.  2014.  Genome-wide QTL and bulked transcriptomic analysis reveals new candidate genes for the control of tuber carotenoid content in potato (Solanum tuberosum L.). Theoretical and Applied Genetics. 127:1917-1933.
Pritchard L, White JA, Birch PRJ, Toth IK.  2006.  GenomeDiagram: A python package for the visualisation of large-scale genomic data. Bioinformatics. 22:616-617. Abstract
Mascher M, Schuenemann VJ, Davidovich U, Marom N, Himmelbach A, Hubner S, Korol A, David M, Reiter E, Riehl S et al..  2016.  Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley. Nature Genetics. 48:1089-1093.
Kerr PJ, Cattadori IM, Rogers MB, Fitch A, Geber A, Liu J, Sim DG, Boag B, Eden JS, Ghedin E et al..  2017.  Genomic and phenotypic characterization of myxoma virus from Great Britain reveals multiple evolutionary pathways distinct from those in Australia. PLoS Pathogens. 13:ArticleNo.e1006252.
Thorpe P, Mantelin S, Cock PJA, Blok VC, Coke MC, van Den Akker SE, Guzeeva E, Lilley CJ, Smant G, Reid AJ et al..  2014.  Genomic characterisation of the effector complement of the potato cyst nematode Globodera pallida. BMC Genomics. 15
Kikuchi T, Cotton JA, Dalzell JJ, Hasegawa K, Kanzaki N, McVeigh P, Takanashi T, Tsai IJ, Assefa SA, Cock PJA et al..  2011.  Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus. PLoS Pathogens. 7:e1002219.
Nevo E, Beharav A, Meyer RC, Hackett CA, Forster BP, Russell JR, Powell W.  2005.  Genomic microsatellite adaptive divergence of wild barley by microclimatic stress in 'Evolution Canyon', Israel. Biological Journal of the Linnean Society. 84:205-224. Abstract
Bryan GJ, Hein I.  2008.  Genomic resources and tools for gene function analysis in potato. International Journal of Plant Genomics. 2008:-216513.
Ramsey JS, Wilson ACC, de Vos M, Sun Q, Tamborindeguy C, Winfield A, Malloch G, Smith DM, Fenton B, Gray SM et al..  2007.  Genomic resources for Myzus persicae: EST sequencing, SNP identification, and microarray design. BMC Genomics. 8:-423. Abstract
Oakey H, Cullis B, Thompson R, Comadran J, Halpin C, Waugh R.  2016.  Genomic selection in multi-environment crop trials. G3- Genes Genomes Genetics. 6:1313-1326.
Bull TJ, Schock A, Sharp JM, Greene M, McKendrick IJ, Sales J, Linedale R, Stevenson K.  2013.  Genomic variations associated with attenuation in Mycobacterium avium subsp paratuberculosis vaccine strains. BMC Microbiology, 13, Article No.11..
Blok VC, Chapman S, Armstrong MR, Phillips M, Lilley C, Urwin P, Blanchard A, Grenier E, Jones JT.  2006.  Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
Pritchard L, Glover RH, Elphinstone JG, Toth IK.  2016.  Genomics and taxonomy in diagnostics for food security: soft-rotting enterobacterial plant pathogens. Analytical Methods. 8:12-24.
Birch PRJ, Cooke DEL.  2013.  Genomics: the early days of late blight. eLife. 2:e00954.
Mwafulirwa L, Paterson E, Cairns JE, Daniell TJ, Thierfelder C, Baggs EM.  2021.  Genotyic variation in maize (Zeamays)-microbe-management interactions for enhancing soil functioning in maize-based cropping systems. New Phytologist. Published online..
Ford KE, Gregory PJ, Gooding MJ, Pepler S.  2006.  Genotype and fungicide effects on late-season root growth of winter wheat.. Plant and Soil. 284:33-44. Abstract
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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.