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2013

Schmidt S, Raven JA, Paungfoo-Lonhienne C. 2013. The mixotrophic nature of photosynthetic plants. Functional Plant Biology. 40:425-438.

Porter R, Norman RA, Gilbert L. 2013. A model to test how ticks and louping ill virus can be controlled by treating red grouse with acaricide. Medical and Veterinary Entomology. 27:237-246.

Kragt ME, Robson BJ, Macleod CJA. 2013. Modellers' roles in structuring integrative research projects. Environmental Modelling and Software. 39:322-330.

Elledge AE, McAlpine CA, Murray PJ, Gordon IJ. 2013. Modelling habitat preferences of feral pigs for rooting in lowland rainforest. Biological Invasions. 15:1523-1535.

Poggio L, Gimona A. 2013. Modelling high resolution RS data with the aid of coarse resolution data and ancillary data. International Journal of Applied Earth Observations and Geoinformation. 23:360-371.

Fox NJ, Marion G, Davidson RS, White PCL, Hutchings MR. 2013. Modelling parasite transmission in a grazing system: the importance of host behaviour and immunity. PLoS ONE. 8:e77996.

Hardstaff JL, Bulling MT, Marion G, Hutchings MR, White PCL. 2013. Modelling the impact of vaccination on tuberculosis in badgers. Epidemiology and Infection. 141:1417-1427.

Armas C, Schoeb C, Gutierrez JR. 2013. Modulating effects of ontogeny on the outcome of plant-plant interactions along stress gradients. New Phytologist. 200:7-9.

Nechwatal J, Bakonyi J, Cacciola SO, Cooke DEL, Jung T, Nagy ZA, Vannini A, Vettraino AM, Brasier CM. 2013. The morphology, behaviour and molecular phylogeny of Phytophthora taxon Salixsoil and its redesignation as Phytophthora lacustris sp nov. Plant Pathology. 62:355-369.

Yao HY, Campbell CD, Chapman SJ, Freitag TE, Nicol GW, Singh BK. 2013. Multi-factorial drivers of ammonia oxidizer communities: evidence from a national soil survey. Environmental Microbiology. 15:2545-2556.

2012

Demars BOL, Kemp JL, Friberg N, Usseglio-Polatera P, Harper DM. 2012. Macroinvertebrate abundance and proportion of trait categories in river biotopes across England and Wales. PANGEAE database Supplement to: Demars, B.O.L.; Kemp, J.L.; Friberg, N.; Usseglio-Polatera, P.; Harper, D.M. (2012): Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators.. 23:301-311.

Gilbert L, Williamson KA, Graves JA. 2012. Male attractiveness regulates daughter fecundity non-genetically via maternal investment. Proceedings of the Royal Society of London, B.. 279:523-528.

Mann AN, O'Reilly-Wapstra JM, Iason GR, Sanson G, Davies NW, Tilyard P, Williams D, Potts BM. 2012. Mammalian herbivores reveal marked genetic divergence between populations of an endangered plant species. Oikos. 121:268-276.

van der Zee R, Pisa L, Andonov S, Brodschneider R, Charriere JD, Chlebo R, Coffey MF, Crailsheim K, Dahle B, Gajde A et al.. 2012. Managed honey bee colony losses in Canada, China, Europe, Israel and Turkey, for the winters of 2008-9 and 2009-10. Journal of Agricultural Research. 51:91-114.

White PJ, Broadley MR, Gregory PJ. 2012. Managing the nutrition of plants and people. Applied and Environmental Soil Science, 2012, Article id 104826, 13pp..

Carpenter D, Sherlock E, Jones DT, Chiminoides J, Writer T, Neilson R, Boag B, Keith AM, Eggleton P. 2012. Mapping of earthworm distribution for the British Isles and Eire highlights the under-recording of an ecologically important group. Biodiversity and Conservation. 21:475-485.

Cortada L, Mantelin S, Verdejo-Lucas S, Kaloshian I. 2012. Marker analysis for detection of the Mi-1.2 resistance gene in tomato hybrid rootstocks and cultivars. Nematology. 14:631-642.

Bartley PM, Wright SE, Maley SW, Macaldowie CN, Nath M, Hamilton CM, Katzer F, Buxton D, Innes EA. 2012. Maternal and foetal immune responses of cattle following an experimental challenge with Neospora caninum at day 70 of gestation. Veterinary Research. 43:38.

Deng W, Jeng DS, Toorop PE, Squire GR, Iannetta PPM. 2012. A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris L. Medic (shepherd's purse). Annals of Botany. 109:419-427.

Brown EM, Gill CIR, McDougall GJ, Stewart D. 2012. Mechanisms underlying the anti-proliferative effects of berry components in in vitro models of colon cancer. Current Pharmaceutical Biotechnology. 13:200-209.

Stephenson T, Reid E, Avery LM, Jefferson B. 2012. Media surface properties and the development of nitrifying biofilms in mixed cultures for wastewater treatment. Process Safety and Environmental Protection. Published online. 91:321-324.

Frank T, Rohlig RM, Davies HV, Barros E, Engel K. 2012. Metabolite profiling of maize kernels - genetic modification versus environmental influence. Journal of Agricultural and Food Chemistry. 60:3005-3012.

Gontikaki E, Polymenakou PN, Thornton B, Narayanaswamy BE, Black K, Tselepides A, Witte U. 2012. Microbial response to organic matter enrichment in the oligotrophic Levantine Basin (Eastern Mediterranean). Geomicrobiology Journal. 29:648-655.

Pariser EC, Gilbert L, Hazon N, Arnold KE, Graves JA. 2012. Mind the gap: the ration of yolk androgens and antioxidants varies between sons and daughters dependent on paternal attractiveness. Behavioral Ecology and Sociobiology. 66:519-527.

Iavazzo P, Adamo P, Boni M, Hillier S, Zampella M. 2012. Mineralogy and chemical forms of lead and zinc in abandoned mine wastes and soils: an example from Morocco. Journal of Geochemical Exploration. 113:56-67.

Tilsner J, Oparka KJ. 2012. Missing links? The connection between replication and movement of plant RNA viruses Current Opinion in Virology. 2:705-711.

Brouwer R, Martin-Ortega J. 2012. Modeling self-censoring of polluter pays protest votes in stated preference research to support resource damage estimations in environmental liability. Resource and Energy Economics. 34:151-166.

Bagavathiannan MV, Begg GS, Gulden RH, Van Acker RC. 2012. Modelling the dynamics of feral alfalfa populations and its management implications. PLoS One. 7:e39440.

Tyson T, O'Mahony ZG, Skelton M, Daly MB, Jones JT, Elsworth B, Phillips M, Blaxter M, Burnell AM. 2012. A molecular analysis of desiccation tolerance mechanisms in the anhydrobiotic nematode Panagrolaimus superbus using expressed sequenced tags. BMC Research Notes. 5:e68.

Grundy KC, Woodward S, Genney DR, Taylor AFS. 2012. A molecular approach to explore the extent of the threatened fungus Hypocreopsis rhododendri within wood. Fungal Biology. 116:354-362.

Owen G, Perks M, Benskin C, Wilkinson ME, Jonczyk J, Quinn PF. 2012. Monitoring agricultural diffuse pollution through a dense monitoring network in the River Eden Demonstration Test Catchment, Cumbria, UK. Area. 44:443-453.

Ward Thompson C, Roe J, Aspinall P, Mitchell R, Clow A, Miller DR. 2012. More green space is linked to less stress in deprived communities: evidence from salivary cortisol patterns. Landscape and Urban Planning. 105:221-229.

Soloviy I, Nijnik M, Ilkiv K. 2012. Mountain forestry policy and strategies in response to climate change challenges: the case of the Ukrainian Carpathians. Journal of Economy and Ecology..

Semashko MA, Rakitina DV, Gonzalez I, Canto T, Kalinina N, Taliansky ME. 2012. Movement protein of hordeivirus interacts in vitro and in vivo with coilin, a major structural protein of Cajal bodies. Doklady Biochemistry and Biophysics. 442:57-60.

Sugden D, Werritty A, Webb J, Caldwell E, Campbell CD, Dlugolecki A, Hanley N, Kerr A. 2012. Multi-level governance: opportunities and barriers in moving to a low-carbon Scotland. Earth and Environmental Science, Transactions of the Royal Society of Edinburgh. 103:175-186.

Sutherland C, Elston DA, Lambin X. 2012. Multi-scale processes in metapopulations: contributions of stage structure, rescue effect, and correlated extinctions. Ecology. 93:2465-2473.

Elliott GN, Thomas N, MacRae M, Campbell CD, Ogden ID, Singh BK. 2012. Multiplex T-RFLP allows for increased target number and specificity: Detection of Salmonella enterica and six species of Listeria in a single test. PLoS One. 7:e43672.

Jones MA, Williams BA, McNicol JW, Simpson CG, Brown JWS, Harmer SL. 2012. Mutation of Arabidopsis spliceosomal timekeeper locus 1 causes circadian clock defects. The Plant Cell. 24:4066-4082.

2011

Whitfield S, Reed M, Thomson KJ, Christie M, Stringer L, Quin CH, Anderson R, Moxey A, Hubacek K. 2011. Managing peatland ecosystem services: current UK policy and future challenges in a changing world. Scottish Geographical Journal. 127:209-230.

Frederiksen M, Elston DA, Edwards M, Mann AD, Wanless S. 2011. Mechanisms of long-term decline in size of lesser sandeels in the North Sea explored using a growth and phenology model. Marine Ecology Progress Series. 432:137-147.

Veresoglou SD, Mamolos AP, Thornton B, Voulgari OK, Sen R, Veresoglou S. 2011. Medium-term fertilization of grassland plant communities masks plant species linked effects on soil microbial community structure. Plant and Soil. 344:187-196.

Fischer A, Langers F, Bednar-Friedl B, Geamana N, Skogen K. 2011. Mental representations of animal and plant species in their social contexts: Results from a survey across Europe. Journal of Environmental Psychology. 31:118-128.

Abreu IN, Choi YH, Sawaya ACHF, Eberlin MN, Mazzafera P, Verpoorte R. 2011. Metabolic alterations in different development stages Pilocarpus microphyllus. Planta Medica. 77:293-300.

Lapierre H, Vazquez-Anon M, Parker D, Dubreuil P, Holtrop G, Lobley GE. 2011. Metabolism of 2-hydroxy-4-(methylthio)butanoate (HMTBA) in lactating dairy cows. Journal of Dairy Science. 94:1526-1535.

Beleggia R, Platani C, Papa R, Di Chio A, Barros E, Mashaba C, Wirth J, Fammartino A, Sautter C, Conner S et al.. 2011. Metabolomics and food processing: from semolina to pasta. Journal of Agricultural and Food Chemistry. 59:9366-9377.

Rubio-Aliaga I, de Roos B, Duthie SJ, Crosley LK, Mayer C, Horgan GW, Colquhoun IJ, Le Gall G, Huber F, Kremer W et al.. 2011. Metabolomics of prolonged fasting in humans reveals new catabolic markers. Metabolomics. 7:375-387.

Shepherd LVT, Fraser PD, Stewart D. 2011. Metabolomics: a second-generation platform for crop and food analysis. Bioanalysis. 3:1143-1159.

Ronfort C, Souchere V, Martin P, Sebillotte C, Castellazzi MS, Barbottin A, Meynard JM, Laignel B. 2011. Methodology for land use change scenario assessment for runoff impacts: A case study in a north-western European Loess belt region (Pays de Caux, France). Catena. 86:36-48.

Hopkins DW, Waite IS, O'Donnell AG. 2011. Microbial biomass, organic matter mineralization and nitrogen in soils from long-term experimental grassland plots (Palace Leas meadow hay plots, UK). European Journal of Soil Science. 62:95-104.

Garcia-Pausas J, Paterson E. 2011. Microbial community abundance and structure are determinants of soil organic matter mineralisation in the presence of labile carbon. Soil Biology and Biochemistry. 43:1705-1715.

Comadran J, Russell JR, Booth A, Pswarayi A, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A et al.. 2011. Mixed model association scans of multi-environmental trial data reveal major loci controlling yield and yield related traits in Hordeum vulgare in Mediterranean environments. Theoretical and Applied Genetics. 122:1363-1373.

Caron-Lormier G, Bohan DA, Dye R, Hawes C, Humphry RW, Raybould A. 2011. Modelling an ecosystem: the example of agro-ecosystems. Ecological Modelling. 222:1163-1173.

Grzegorczyk M, Husmeier D, Rahnenfuhrer J. 2011. Modelling non-stationary dynamic gene regulatory processes with the BGM model. Computational Statistics. 26:199-218.

Bohan DA, Powers SJ, Champion G, Haughton AJ, Hawes C, Squire GR, Cussans J, Mertens SK. 2011. Modelling rotations: can crop sequences explain arable weed seedbank abundance? Weed Research. 51:422-432.

Kuster EC, Bierman SM, Klotz S, Kuhn I. 2011. Modelling the impact of climate and land use change on the geographical distribution of leaf anatomy in a temperate flora. Ecography. 34:507-518.

Duarte IM, Almeida MTM, Duarte MM, Brown DJF, Neilson R. 2011. Molecular diagnosis of trichodorid species from Portugal. Plant Pathology. 60:586-594.

Scibetta S, Schena L, Chimento A, Cacciola SO, Cooke DEL. 2011. A molecular method to assess Phytophthora diversity in environmental samples. Journal of Microbiological Methods. 88:356-368.

Oliveira CMG, Inomoto MM, Bessi R, Tomazini MDO, Blok VC. 2011. Molecular techniques and classical taxonomy on plant-parasitic nematodes diagnosis. Annual Review of Plant Pathology. 19:309-336.

Oliveira CMG, Monteiro AR, Blok VC. 2011. Morphological and molecular diagnostics for plant-parastic nematodes: working together to get the identification done. Tropical Plant Pathology. 36:65-73.

van Doorn WG, Beers EP, Dangl JL, Franklin-Tong VE, Gallois P, Hara-Nishimura I, Jones AM, Kawai-Yamada M, Lam E, Mundy J et al.. 2011. Morphological clasification of plant cell deaths. Cell Death and Differentiation. 18:1241-1246.

Perez-Mendoza D, Coulthurst SJ, Humphris S, Campbell E, Welch M, Toth IK, Salmond GPC. 2011. A multi-repeat adhesin of the phytopathogen, Pectobacterium atrosepticum, is secreted by a Type 1 pathway and is subject to complex regulation involving a non-canonical diguanylate cyclase. Molecular Microbiology. 82:719-733.

Bennett AE, Thomsen M, Strauss SY. 2011. Multiple mechanisms enable invasive species to suppress native species. Amercian Journal of Botany. 98:1086-1094.

Pakeman RJ. 2011. Multivariate identification of plant functional response and effect traits in an agricultural landscape. Ecology. 92:1353-1365.

2010

Newton AC, Gravouil C, Fountaine JM. 2010. Managing the ecology of foliar pathogens: ecological tolerance in crops (Review). Annals of Applied Biology. 157:343-359.

Blum M, Boehler M, Randall E, Young V, Csukai M, Kraus S, Moulin F, Scalliet G, Avrova AO, Whisson SC et al.. 2010. Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.

Rhind SM, Kyle CE, Mackie C, McDonald L, Zhang Z, Duff EI, Bellingham M, Amezaga MR, Mandon-Pepin B, Loup B et al.. 2010. Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.

Dixon ER, Blackwell MSA, Dhanoa MS, Berryman Z, de la Fuente Martinez N, Junquera D, Martinez A, Murray PJ, Kemp HF, Meier-Augenstein W et al.. 2010. Measurement at the field scale of soil . Rapid Communications in Mass Spectrometry. 24:511-518.

Campbell R, Ducreux LJM, Morris WL, Morris JA, Suttle JC, Ramsay G, Bryan GJ, Hedley PE, Taylor MA. 2010. The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.

Davies HV, Shepherd LVT, Stewart D, Frank T, R R, Engel K-H. 2010. Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.

Shepherd LVT, Alexander CA, Sungurtas J, McNicol JW, Stewart D, Davies HV. 2010. Metabolomic analysis of the potato tuber life cycle. Metabolomics. 6:274-291.

Renberg L, Johansson AI, Shutova T, Stenlund H, Aksmann A, Raven JA, Gardestrom P, Moritz T, Samuelsson G. 2010. A metabolomic approach to study major metabolite changes during acclimation to limiting CO2 in Chlamydomonas reinhardtii. Plant Physiology. 154:187-196.

Dobson G, Shepherd T, Verrall SR, Griffiths DW, Ramsay G, McNicol JW, Davies HV, Stewart D. 2010. A metabolomics study of cultivated potato (Solanum tuberosum) groups, Andigena, Phureja, Stenotomum and Tuberosum using gas chromatography-mass spectrometry. Journal of Agricultural and Food Chemistry. 58:1214-1223.

Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG et al.. 2010. A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.

Fenton B, Margaritopoulos JT, Malloch GL, Foster SP. 2010. Micro-evolutionary change in relation to insecticide resistance in the peach-potato aphid, Myzus persicae. Ecological Entomology. 35:131-146.

Castillo NRF, Reed BM, Graham J, Fern F, Bassil NV. 2010. Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.

Elia M, Swanston JS, Moralejo MA, Casas AM, P AM, Ciudad FJ, Thomas WTB, Smith PL, Ullrich SE, Molina-Cano J-L. 2010. A model of the genetic differences in malting quality between European and North American barley cultivars based on a QTL study of the cross Triumph x Morex. Plant Breeding. 129:280-290.

Preedy K, Schofield PG, Liu S, Matzavinos A, Chaplain MAJ, Hubbard SF. 2010. Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.

Grzegorczyk M, Husmeier D, Rahnenf J. 2010. Modelling nonstationary gene regulatory processes. Advances in Bioinformatics. :-749848.

Stott AW, Humphry RW, Gunn GJ. 2010. Modelling the effects of previous infection and re-infection on the costs of bovine viral diarrhoea outbreaks in beef herds. Veterinary Journal. 185:138-143.

Madsen LH, Tirichine L, Jurkiewicz A, Sullivan JT, Heckmann AB, Bek AS, Ronson CW, James EK, Stougaard J. 2010. The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.

Clayton SJ, Clegg CD, Bristow AW, Gregory PJ, Headon DM, Murray PJ. 2010. Movement of newly assimilated 13C carbon in the grass Lolium perenne and its incorporation into rhizosphere microbial DNA. Rapid Communications in Mass Spectrometry. 24:535-540.

Hackett CA, Russell JR, Jorgensen L, Gordon SL, Brennan RM. 2010. Multi-environment QTL mapping in blackcurrant (Ribes nigrum L.) using mixed models. Theoretical and Applied Genetics. 121:1483-1488.

Oono R, Schmitt I, Sprent JI, Denison RF. 2010. Multiple evolutionary origins of legume traits leading to extreme rhizobial differentiation. New Phytologist. 187:508-520.

Dawson LA, Hillier S. 2010. Measurement of soil characteristics for forensic applications. Surface and Interface Analysis. 42(5):363-377.

Singh BK, Bardgett R, Smith P, Reay D. 2010. Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nature Reviews Microbiology. 8(11):779-790.

Pillot MH, Gautrais J, Gouello J, Michelena P, Sibbald AM, Bon R. 2010. Moving together: Incidental leaders and naive followers. Behavioural Processes. 83(3):225-241.

Sproston EL, Ogden ID, MacRae M, Forbes KJ, Dallas JF, Sheppard SK, Cody A, Colles F, Wilson MJ, Strachan NJC. 2010. Multi-locus sequence types of Campylobacter carried by flies and slugs acquired from local ruminant faeces. Journal of Applied Microbiology. 109(3):829-838.

2009

Graham J, Hackett CA, Smith K, Woodhead M, Hein I, McCallum S. 2009. Mapping QTLs for developmental traits in raspberry from bud break to ripe fruit. Theoretical and Applied Genetics. 118:1143-1155. Abstract

Hargreaves CE, Gregory PJ, Bengough AG. 2009. Measuring root traits in barley (Hordeum vulgare ssp. vulgare and ssp. spontaneum) seedlings using gel chambers, soil sacs and x-ray microtomography. Plant and Soil. 316:285-297.

Mickovski SB, Hallett PD, Bransby MF, Davies MCR, Sonnenberg R, Bengough AG. 2009. Mechanical reinforcement of soil by willow roots: impacts of root properties and root failure mechanism. Soil Science Society of America Journal. 73:1276-1285. Abstract

Pritchard L, Liu H, Booth C, Douglas E, Fran P, Schrenzel J, Hedley PE, Birch PRJ, Toth IK. 2009. Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.

Vinten AJA, Potts JM, Avery L, Strachan NJC. 2009. Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3:744-752.

Butler A, Doherty RM, Marion G. 2009. Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.

Karley AJ, White PJ. 2009. Moving cationic minerals to edible tissues: potassium, magnesium, calcium (Review). Current Opinion in Plant Biology. 12:291-298. Abstract

Blower TR, Fineran PC, Johnson MJ, Toth IK, Humphreys DP, Salmond GPC. 2009. Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.

Vinten AJA, Avery LM, Potts JM, Strachan N. 2009. Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3(5):744-752.

Marwa EMM, Hillier S, Rice CM, Meharg AA. 2009. Mineralogical and chemical characterization of some vermiculites from the Mozambique Belt of Tanzania for agricultural use. Clay Minerals. 44(1):1-17.

Simpson SJ, Raubenheimer D, Charleston MA, Clissold FJ, Couzin ID, Kendall D, Clements KD, Ross A, Coleman RA, Dussutour A et al.. 2009. Modelling nutritional interactions: from individuals to communities. Trends in Ecology and Evolution.. 25(1):53-60.

Futter MN, Skeffington RA, Whitehead PG, Moldan F. 2009. Modelling stream and soil water nitrate dynamics during experimentally increased nitrogen deposition in a coniferous forest catchment at Gardsjon, Sweden. Hydrology Research. 40(2-3):187-197.

Futter MN, Helliwell RC, Hutchins M, Aherne J. 2009. Modelling the effects of changing climate and nitrogen deposition on nitrate dynamics in a Scottish mountain catchment. Hydrology Research. 40(2-3):153-166.

Spash CL, Urama KC, Burton R, Kenyon W, Shannon PH, Hill G. 2009. Motives behind willingness to pay for improving biodiversity in a water ecosystem: economics, ethics and social psychology. Ecological Economics. 68(4):955-964.

Stutter MI, Langan SJ, Lumsdon DG, Clark LM. 2009. Multi-element signatures of stream sediments and sources under moderate to low flow conditions. Applied Geochemistry. 24(5):800-809.

2008

Wheaton AD, McKenzie BM, Tisdall JM. 2008. Management to increase the depth of soft soil improves soil conditions and grapevine performance in an irrigated vineyard. Soil and Tillage Research. 98:68-80. Abstract

Comadran J, Russell JR, van Eeuwijk FA, Ceccarelli S, Grando S, Baum M, Stanca AM, Pecchioni N, Mastrangelo AM, Akar T et al.. 2008. Mapping adaptation of barley to droughted environments. Euphytica. 161:35-45. Abstract

Fowler PA, Cassie S, Rhind SM, Brewer MJ, Collinson JM, Lea RG, Baker PJ, Bhattacharya S, O'Shaughnessy PJ. 2008. Maternal smoking during pregnancy specifically reduces human fetal desert hedgehog gene expression during testis development. Journal of Clinical Endocrinology and Metabolism. 93:619-626. Abstract

Solomon-Blackburn RM, Nikan J, Barker H. 2008. Mechanism of strong resistance to Potato leafroll virus infection in a clone of potato (Solanum tuberosum). Annals of Applied Biology. 152:339-347. Abstract

Giuliano G, Tavazza R, Diretto G, Beyer P, Taylor MA. 2008. Metabolic engineering of carotenoid biosynthesis in plants. Trends in Biotechnology. 26:139-145. Abstract

Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW. 2008. Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract

Grzegorczyk M, Husmeier D, Edwards KD, Ghazal P, Millar AJ. 2008. Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract

Morris WL, Ducreux LJM, Bryan GJ, Taylor MA. 2008. Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.

Sharma SK, Millam S, Hedley PE, McNicol JW, Bryan GJ. 2008. Molecular regulation of somatic embryogenesis in potato: an auxin led perspective. Plant Molecular Biology. 68:185-201. Abstract

Simpson CG, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol JW, Barta A, Brown JWS. 2008. Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts. The Plant Journal. 53:1035-1048. Abstract

Nonyane BAS, Theobold CM. 2008. Multiplicative models for combining information from several sensory experiments: A Bayesian analysis. Food Quality and Preference. 19:260-266. Abstract

Brown E, Aitkenhead MJ, Wright R, Aalders IH. 2008. Mapping and classification of peatland on the Isle of Lewis using Landsat ETM+. Scottish Geographcial Journal. 123(3):173-192.

Martin-Hernando MP, Gonzalez LM, Ruiz-Fons F, Garate T, Gortazar C. 2008. Massive presence of Echinococcus granulosus (Cestoda, Taeniidae) cysts in a wild boar (Sus scrofa) from Spain. Parasitology Research, 103, 705-707. 103(3):705-707.

Fowler PA, Cassie S, Rhind BSMMJ, Collinson JM, Lea RG, Baker PJ, Bhattacharya S, O'Shaughnessy PJ. 2008. Maternal smoking during pregnancy specifically reduces human fetal Desert hedgehog gene expression during testis development. Journal of Clinical Endocrinology and Metabolism. 93(2):619-626.

Eckersall PD, Lawson FP, Kyle CE, Waterston M, Bence L, Stear MJ, Rhind SM. 2008. Maternal undernutrition and the ovine acute phase response to vaccination. BMC Veterinary Research, 4:1. 4(1)

Blackstock KL, White V, McCrum G, Scott A, Hunter C. 2008. Measuring responsibility: an appraisal of a Scottish National Park's sustainable tourism indicators. Journal of Sustainable Tourism. 16(3):276-297.

Midwood AJ, Thornton B, Millard P. 2008. Measuring the 13C content of soil respired CO2 using a novel open chamber system. Rapid Communications in Mass Spectrometry. 22:2073-2081.

Macleod CJA, Haygarth PM, Blackstock KL. 2008. Mechanisms to improve integrative research at the science-policy interface for sustainable catchment management. Ecology and Society. 13(2):art48.

Belzunce-Segarra MJ, Prego R, Wilson MJ, Bacon J, Santos-Echeand J. 2008. Method speciation in surface sediments of the Vigo Ria (NW Iberian Peninsula). Scientia Marina. 72:119-126.

Sommerkorn M. 2008. Micro-topographic patterns unravel controls of soil water and temperature on soil respiration in three Siberian tundra systems. Soil Biology and Biochemistry.. 40(7):1792-1802.

Macdonald LM, Singh BK, Thomas N, Brewer M, Campbell CD, Dawson LA. 2008. Microbial DNA profiling by multiplex terminal restriction fragment length polymorphism for forensic examination of soil evidence and the influence of sample condition. Journal Applied Microbiology. 105(3):813-821.

Manh Khai N, Oborn I, Hillier SJ, Gustafsson JP. 2008. Modeling of metal binding in tropical Fluvisols and Acrisols treated with biosolids and wastewater. Chemosphere. 70(8):1338-1346.

Aalders IH. 2008. Modelling land use decision behavior with Bayesian belief networks. Ecology and Society. 13(1):16.

Futter MN, Starr FMM, Holmberg M. 2008. Modelling long-term patterns of dissolved organic carbon concentration in the surface waters of a boreal catchment. Hydrology and Earth System Sciences. 12(2):437-447.

Williams AP, Avery LM, Killham K, Jones DL. 2008. Moisture, sawdust, and bleach regulate the persistence of Escherichia coli O157 : H7 on floor surfaces in butcher shops. Food Control. 19(12):1119-1125.

Singh BK, Macdonald CA, Campbell CD, Bacon J. 2008. Multiple profiling of soil microbial communities identifies potential genetic markers of metal-enriched sewage sludge. FEMS Microbiology Ecology. 65:555-564.

2007

Mickovski SB, Bengough AG, Bransby MF, Davies MCR, Hallett PD, Sonnenberg R. 2007. Material stiffness, branching pattern, and soil water matric potential affect the pullout resistance of model root systems. European Journal of Soil Science. 58:1471-1481. Abstract

Feuillet C, Langridge P, Waugh R. 2007. Meeting Report: The Aaronsohn-ITMI International Conference. Israel Journal of Plant Sciences. 55:315-319.

Stewart D, McDougall GJ, Sungurtas J, Verrall SR, Graham J, Martinussen I. 2007. Metabolomic approach to identifying bioactive compounds in berries: Advances toward fruit nutritional enhancement. Molecular Nutrition and Food Research. 51:645-651. Abstract

Griffiths BS, Caul S, Thompson J, Birch ANE, Cortet J, Andersen MN, Krogh PH. 2007. Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract

Gibson T, Blok VC, Phillips MS, Hong G, Kumarasinghe D, Riley IT, Dowton M. 2007. The mitochondrial subgenomes of the nematode Globodera pallida are mosaics: Evidence of recombination in an animal mitochondrial genome. Journal of Molecular Evolution. 64:463-471. Abstract

Rae SJ, Macaulay M, Ramsay L, Leigh F, Matthews D, O'Sullivan DM, Donini P, Morris PC, Powell W, Marshall DF et al.. 2007. Molecular barley breeding. Euphytica. 158:295-303. Abstract

Adam MAM, Phillips MS, Blok VC. 2007. Molecular diagnostic key for identification of single juveniles of seven common and economically important species of root-knot nematode (Meloidogyne spp.). Plant Pathology. 56:190-197. Abstract

Morris WL, Ducreux LJM, Bryan GJ, Taylor MA. 2007. Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297. Abstract

Riga E, Karanastasi E, Oliveira CMG, Neilson R. 2007. Molecular identification of two stubby root nematode species. American Journal of Potato Research. 84:161-167. Abstract

Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al.. 2007. Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.

Chaerle L, Leinonen I, Jones HG, van der Straeten D. 2007. Monitoring and screening plant populations with combined thermal and chlorophyll fluorescence imaging. Journal of Experimental Botany. 58:773-784. Abstract

Jones HG. 2007. Monitoring plant and soil water status: established and novel methods revisited and their relevance to studies of drought tolerance. Journal of Experimental Botany. 58:119-130. Abstract

Caumette G, Ouypornkochagorn S, Scrimgeour CM, Raab A, Feldmann J. 2007. Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract

Matheson LA, Loren A, Hanton SL, Rossi M, Latijnhouwers M, Stefano G, Renna L, Brandizzi F. 2007. Multiple roles of ADP-ribosylation factor 1 in plant cells include spatially regulated recruitment of coatomer and elements of the golgi matrix. Plant Physiology. 143:1615-1627.

Beale CM. 2007. Managing visitor access to seabird colonies: a spatial simulation and empirical observations. Ibis (Suppl.1.). 149:102-111.

Gimona A, van der Horst D. 2007. Mapping hotspots in landscape functionality; a case study on farmland afforestation in Scotland. Landscape Ecology. 22(8):1255-1264.

Cots-Folch R, Aitkenhead MJ, Martinez-Casasnovas JA. 2007. Mapping land cover from detailed aerial photography data using textural and neural network analysis. International Journal of Remote Sensing. 28(7):1625-1642.

Hyatt M, Gopalakrishnan GS, Bispham J, Gentili S, McMillen IC, Rhind SM, Rae MT, Kyle CE, Brooks AN, Jones C et al.. 2007. Maternal nutrient restriction in early pregnancy programmes hepatic mRNA expression of growth related genes and liver size in adult male sheep. Journal of Endocrinology. 192(1):87-97.

Perez-Barberia FJ, Walker DM, Marion G. 2007. Maximising intake under challenging foraging conditions at two hierarchical spatial scales in males and females of Soay sheep. Animal Behaviour. 73(2):339-348.

Tate KR, Ross DJ, Saggar S, Hedley CB, Dando J, Singh BK, Lamb SJ. 2007. Methane uptake in soils from Pinus radiata plantations, a reverting shrubland and adjacent pastures: effects of land-use change, and soil texture, water and mineral nitrogen. Soil Biology and Biochemistry. 39(7):1437-1449.

Xiong W, Matthews R, Holman I, Lin E, Xu Y. 2007. Modelling China's potential maize production at regional scale under climate change. Climatic Change. 85(3-4):433-451.

Aitkenhead MJ, Aitkenhead-Peterson JA, McDowell W, Smart RP, Cresser M. 2007. Modelling doc export from catchments in Scotland using neural networks. Computers and Geosciences. 33:423-436.

Brooker RW, Travis JMJ, Clark EJ, Dytham C. 2007. Modelling species' range shifts in a changing climate: The impacts of biotic interactions, dispersal distance and the rate of climate change. Journal of Theoretical Biology. 245(1):59-65.

Futter MN, Butterfield D, Cosby BJ, Dillon PJ, Wade AJ, Whitehead PJ. 2007. Modelling the mechanisms that control in-stream dissolved organic carbon dynamics in upland and forested catchments. Water Resources Research, W02424.. 43(2):W02424.

Matthews R. 2007. Modelling the sustainability of rural systems: concepts, approaches and tools. Journal of Agricultural Science. 145:636-641.

McDonnell JJ, Sivapalan M, Vache K, Dunn S, Grant G, Haggerty R, Hinz C, Hooper R, Kirchner J, Roderick M et al.. 2007. Moving beyond heterogeneity and process complexity: A new vision for watershed hydrology. Water Resources Research. 43(7):W07301.

Cox ES, Marrs RH, Pakeman RJ, Le Duc MG. 2007. A multi-site assessment of the effectiveness of Pteridium aquilinum control in Great Britain. Applied Vegetation Science. 10:429-440.

Soininen J, Lennon JJ, Hillebrand H. 2007. A multivariate analysis of beta diversity across organisms and environments. Ecology. 88(11):2830-2838.

2006

Graham J, Smith K, Tierney I, MacKenzie K, Hackett CA. 2006. Mapping gene H controlling cane pubescence in raspberry and its association with resistance to cane botyritis and spur blight, rust and cane spot. Theoretical and Applied Genetics. 112:818-831. Abstract

Bradshaw JE, Bryan GJ, Lees AK, McLean K, Solomon-Blackburn RM. 2006. Mapping the R10 and R11 genes for resistance to late blight (Phytophthora infestans) present in the potato (Solanum tuberosum) R-gene differentials of Black. Theoretical and Applied Genetics. 112:744-751. Abstract

H C, English LC, Halpin C, Andreux F, Hopkins DW. 2006. Microbial community structure in soils with decomposing residues from plants with genetic modifications to lignin biosynthesis. FEMS Microbiology Letters. 263:68-75. Abstract

Malloch G, Highet F, Kasprowicz L, Pickup J, Neilson R, Fenton B. 2006. Microsatellite marker analysis of peach-potato aphids (Myzus persicae, Homoptera: Aphididae) from Scottish suction traps. Bulletin of Entomological Research. 96:573-582. Abstract

Zhang X, Johnson SN, Gregory PJ, Crawford JW, Young IM, Murray PJ, Jasinka E. 2006. Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract

Begg GS, Hockaday S, McNicol JW, Askew M, Squire GR. 2006. Modelling the persistence of volunteer oilseed rape (Brassica napus). Ecological Modelling. 198:195-207. Abstract

Griffiths BS, Donn S, Neilson R, Daniell TJ. 2006. Molecular sequencing and morphological analysis of a nematode community. Applied Soil Ecology. 32:325-337. Abstract

Long DG, Paton JA, Squirrell J, Woodhead M, Hollingsworth PM. 2006. Morphological, ecological and genetic evidence for distinguishing Anastrophyllum joergensenii Schiffn. and A. alpinum Steph. (Jungermanniopsida: Lophoziaceae). Journal of Bryology. 28:108-117. Abstract

Tuomainen MH, Nunan N, Lehesranta SJ, Tervahauta AI, Hassinen VH, Schat H, Koistinen KM, Auriola S, McNicol JW, Karenlampi SO. 2006. Multivariate analysis of protein profiles of metal hyperaccumulator Thlaspi caerulescens accessions. Proteomics. 6:3696-3706. Abstract

Mills A, Morkel P, Runyoro V, Amiyo A, Borner M, Thirgood SJ. 2006. Managing small populations in practice: black rhino in the Ngorongoro Crater, Tanzania. Oryx. 40(3):319-323.

Gilbert L, Williamson KA, Hazon N, Graves JA. 2006. Maternal effects due to male attractiveness affect offspring development in the zebra finch. Proceedings of the Royal Society of London, B. 273(1595):1765-1771.

Singh BK, Walker A. 2006. Microbial degradation of organophosphorus compounds. FEMS Microbiology Review. 30(3):428-471.

Karpouzas DG, Singh BK. 2006. Microbial degradation of organophosphorus xenobiotics: metabolic pathways and molecular basis. Advances in Microbial Physiology. 51:119-185.

Yuangen Y, Campbell CD, Clark L, Cameron CM, Paterson E. 2006. Microbial indicators of heavy metal contamination in urban and rural soils. Chemosphere. 63(11):1942-1952.

Certini G, Wilson MJ, Hillier S, Fraser AR, Delbos E. 2006. Mineral weathering in trachydacitic-derived soils and saprolites involving formation of embryonic halloysite and gibbsite at Monte Amiata, Central Italy. Geoderma. 133(3-4):173-190.

Andrist-Rangel Y, Simonsson M, Andersson S, Oborn I, Hillier S. 2006. Mineralogical budgeting of potassium in soil: a basis for understanding standard measures of reserve potassium. Journal of Plant Nutrition and Soil Science. 169:605-615.

Kaufmann K, Chapman SJ, Campbell CD, Harms H, Hohener P. 2006. Miniaturized test system for soil respiration induced by volatile pollutants. Environmental Pollution. 140(2):269-278.

Wright RF, Aherne J, Bishop K, Camarero L, Cosby BJ, Erlandsson M, Evans CD, Forsius M, Hardekopf H, Helliwell RC et al.. 2006. Modelling the effect of climate change on recovery of acidified freshwaters: relative sensitivity of individual processes in the MAGIC model. The Science of the Total Environment. 365(1-3):154-166.

Thoss V, Byers JA. 2006. Monoterpene chemodiversity of ponderosa pine in relation to herbivory and bark beetle colonization. Chemoecology. 16:51-58.

Littlewood NA, Dennis P, Pakeman RJ, Woodin SJ. 2006. Moorland restoration aids the reassembly of associated phytophagous insects. Biological Conservation. 132(3):395-404.

Milner-Gulland EJ, Kerven C, Behnke R, Wright IA, Smailov A. 2006. A multi-agent system model of pastoralist behaviour in Kazakhstan. Ecological Complexity. 3(1):23-36.

Kok K, Rothman DS, Patel M. 2006. Multi-scale narratives from an IA perspective: Part I. European and Mediterranean scenario development. Futures. 38(3):261-284.

Kok K, Patel M, Rothman DS, Quaranta G. 2006. Multi-scale narratives from an IA perspective: Part II. Participatory local scenario development. Futures. 38(3):285-311.

Singh BK, Thomas N. 2006. Multiplex-terminal restriction fragment length polymorphism (M-TRFLP). Nature Protocols. 1(5):2428-2433.

2005

Bisognin DA, Douches DS, Buszka L, Bryan GJ, Wang D. 2005. Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract

Zhang X, Crawford JW, Deeks LK, Stutter MI, Bengough AG, Young IM. 2005. A mass balance based numerical method for the fractional advection-dispersion equation: Theory and application. Water Resources Research. 41:-W07029. Abstract

Zhang B, Horn R, Hallett PD. 2005. Mechanical resilience of degraded soil amended with organic matter. Soil Science Society of America Journal. 69:864-871. Abstract

McCue KF, Shepherd LVT, Allen PV, Maccree MM, Rockhold DR, Corsini D l, Davies HV, Belknap WR. 2005. Metabolic compensation of steroidal glycoalkaloid biosynthesis in transgenic potato tubers: using reverse genetics to confirm the in vivo enzyme function of a steroidal alkaloid glycosyltransferase. Plant Science. 168:267-273. Abstract

Ducreux LJM, Morris WL, Hedley PE, Shepherd T, Davies HV, Millam S, Taylor MA. 2005. Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein. Journal of Experimental Botany. 56:81-89. Abstract

Whisson SC, Avrova AO, van West P, Jones JT. 2005. A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans. Molecular Plant Pathology. 6:153-163. Abstract

He Y, Jones JT, Armstrong MR, Lamberti F, Moens M. 2005. The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: Enoplea):considerable economization in the length and structural features of encoded genes. Journal of Molecular Evolution. 61:819-833. Abstract

Swanston JS, Newton AC. 2005. Mixtures of UK wheat as an efficient and environmentally friendly source for bioethanol. Journal of Industrial Ecology. 9:109-126. Abstract

Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al.. 2005. Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract

Kikuchi T, Shibuya H, Jones JT. 2005. Molecular and biochemical characterization of an endo-. Biochemical Journal. 389:117-125. Abstract