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2021
Wright K, Wright P, Holden NJ.  2021.  MacConkey broth purple provides an efficient MPN estimation method for Shigatoxigenic Escherichia coli. Journal of Microbiological Methods. 181:ArticleNo.106132.
Lima RCL, Böcker U, McDougall GJ, Allwood JW, Afseth NK, Wubshet SG.  2021.  Magnetic ligand fishing using immobolized DPP-IV for identification of antidiabetic ligands in lingonberry extract. PLOS ONE. 16:ArticleNo.e0247329.
Davis NA, Polhill JG, Aitkenhead MA.  2021.  Measuring heterogeneity in soil networks: a network analysis and simulation-based approach. Ecological Modelling. 439:ArticleNo.109308.
Cai Q, He BY, Wang SM, Fletcher S, Niu DD, Mitter N, Birch PRJ, Jin HL.  2021.  Message in a bubble: shuttling small RNAs and proteins between cells and interacting organisms using extracellular vesicles. Annual Review of Plant Biology. 72:497-524.
Adediran GA, Lundberg D, Almkvist G, Pradas del Real AE, Klysubun W, Hillier S, Gustafsson JP, Simonsson M.  2021.  Micro and nano sized particles in leachates from agricultural soils: phosphorus and sulfur speciation by x-ray micro-spectroscopy. Water Research. 189:ArticleNo.116585.
Zhou SY, Li H, Giles ME, Neilson R, Yang XR, Su JQ.  2021.  Microbial flow within an air-phyllosphere-soil continuum. Frontiers in Microbiology. qq:ArticleNo.615481.
2020
Cakmak I, White PJ.  2020.  Magnesium in crop production and food quality. Plant and Soil. 457:1-3.
Cole LJ, Stockan J, Helliwell RC.  2020.  Managing riparian buffer strips to optimise ecosystem services: a review. Agriculture, Ecosystems and Environment. 296:ArticleNo.UNSP106891.
Sarkki S, Balian E, Heink U, Keune H, Nesshöver C, Niemelä J, Tinch R, Van Den Hove S, Watt A, Waylen KA et al..  2020.  Managing science-policy interfaces for impact: interactions within the environmental governance meshwork. Environmental Science and Policy. 113:21-30.
Hewitt RJ, Pera FA, Garcia-Martin M, Gaudry-Sada KH, Hernandez-Jimenez V, Bieling C.  2020.  Mapping adolescents' sense of place and perceptions of change in an urban-rural transition. Environmental Management. 65:334-354.
Bull DJ, Smethurst JA, Sinclair I, Pierron F, Roose T, Powrie W, Bengough AG.  2020.  Mechanisms of root reinforcement in soils: an experimental methodology using four-dimensional X-ray computed tomography and digital volume correlation. Proceedings of the Royal Society A - Mathematicla Physical and Engineering Science. 476:ArticleNo.20190838.
Aponte H, Meli P, Butler BM, Paolini J, Matus F, Merino C, Cornejo P, Kuzyakov Y.  2020.  Meta analysis of heavy metal effects on soil enzyme activities. Science of the Total Environment. 737:ArticleNo.139744.
Aponte H, Meli P, Butler BM, Paolini J, Matus F, Merino C, Cornejo P, Kuzyakov Y.  2020.  Meta-analysis of heavy metal effects on soil enzyme activities. Science of the Total Environment. 737:ArticleNo.139744.
Butler BM, Palarea-Albaladejo J, Shepherd KD, Nyambura KM, Towett EK, Sila AM, Hillier S.  2020.  Mineral-nutrient relationships in African soils assessed using cluster analysis of X-ray powder diffraction patterns and compositional methods. Geoderma. 375:Article114474.
Zagata L, Sutherland LA, Hrabak J, Lostak M.  2020.  Mobilising the past: Towards a conceptualisation of retro-innovation. Sociologia Ruralis. 60:639-660.
Müller B, Hoffmann F, Heckelei T, Müller C, Hertel TW, Polhill JG, van Wilk M, Achterbosch T, Alexander P, Brown C et al..  2020.  Modelling food security: Bridging the gap between the micro and the macro scale. Global Environmental Change. 63:ArticleNo.102085.
Citores L, Ibaibarriaga L, Lee DJ, Brewer MJ, Santos M, Chust G.  2020.  Modelling species presence-absence in the ecological niche theory framework using shape-constrained generalized additive models. Ecological Modelling. 418:ArticleNo.108926.
Liang T, Knappett JA, Leung AK, Bengough AG.  2020.  Modelling the seismic performance of root-reinforced slopes using the finite-element method. Geotechnique. 70:375-391.
2019
Dittrich R, Butler A, Ball T, Wreford A, Moran D.  2019.  Making real options analysis more accessible for climate change adaptation. An application to afforestation as a flood management measure in the Scottish Borders. Journal of Environmental Management. 245:338-347.
Constantin J, Raynal H, Casellas E, Hoffman H, Bindi M, Doro L, Eckersten H, Gaiser T, Grosz B, Haas E et al..  2019.  Management and spatial resolution effects on yield and water balance at regional scale in crop models. Agricultural and Forest Meteorology. 275:184-195.
Pohle I, Gädeke A, Schümberg S, Hinz C, Koch H.  2019.  Management influences on stream-flow variability in the past and under potential climate change in a Central European mining region. Water Resources Management. 33:5191-5206.
Hille S, Graeber D, Kronvang B, Rubaek GH, Onnen N, Molina-Navarro E, Baattrup-Pedersen A, Heckrath GJ, Stutter MI.  2019.  Management options to reduce phosphorus leaching from vegetated buffer strips. Journal of Environmental Quality. 48:322-329.
Wang W, Ding GD, White PJ, Wang XH, Jin KM, Xu FS, Shi L.  2019.  Mapping and cloning of quantitative trait loci for phosphorus efficiency in crops: opportunities and challenges. Plant and Soil. 439:91-112.
Aitkenhead MJ, Coull MC.  2019.  Mapping soil profile depth, bulk density and carbon stock in Scotland using remote sensing and spatial covariates. European Journal of Soil Science. 71:553-567.
Strachan SM, Armstrong MR, Kaur A, Wright KM, Lim TY, Baker K, Jones J, Bryan G, Blok V, Hein I.  2019.  Mapping the H2 resistance effective against Globodera pallida pathotype Pa1 in tetraploid potato. Theoretical and Applied Genetics. 132:1283-1294.
Tipping E, Davies JAC, Henrys PA, Jarvis SG, Rowe EC, Smart SM, Le Duc MG, Marrs RH, Pakeman RJ.  2019.  Measured estimates of semi-natural terrestrial NPP in Great Britain: comparison with modelled values, and dependence on atmospheric nitrogen deposition. Biogeochemistry. 144:215-227.
Morris WL, Alamar MC, Lopez-Cobollo RM, Cañete Castillo J, Bennett M, van der Kaay J, Stephens J, Sharma SK, Thompson AJ, Terry LA et al..  2019.  A member of the TERMINAL FLOWER 1/CENTRORADIALIS gene family controls sprout growth in potato tubers. Journal of Experimental Botany. 70:835-843.
De Meyer SE, Andrews M, James EK, Willems A.  2019.  Mesorhizobium carmichaelinearum sp. nov., isolated from Carmichaelineae spp. root nodules. International Journal of Systematic and Evolutionary Microbiology. 69:146-152.
Riddell CE, Frederickson-Matika D, Armstrong AC, Elliot M, Forster J, Hedley PE, Morris J, Thorpe P, Cooke DEL, Pritchard L et al..  2019.  Metabarcoding reveals a high diversity of woody host-associated Phytophthora spp. in soils at public gardens and amenity woodlands in Britain. PeerJ. 7:ArticleNo.e6931.
Fan F, Yu B, Wang B, George TS, Yin H, Xu D, Li D, Song A.  2019.  Microbial mechanisms of the contrast residue decomposition and priming effect in soils with different organic and chemical fertilization histories. Soil Biology and Biochemistry. 135:213-221.
Gomez-Consarnau L, Raven JA, Levine NM, Cutter LS, Wang DL, Seegers B, Aristegui J, Fuhrman JA, Gasol JM, Sanudo-Wilhelmy SA.  2019.  Microbial rhodopsins are major contributors to the solar energy captured in the sea. Science Advances. 5:ArticleNo.eaaw8855.
Zheng F, Zhu D, Giles ME, Daniell T, Neilson R, Zhu YG, Yang XR.  2019.  Mineral and organic fertilization alters the microbiome of a soil nematode Dorylaimus stagnalis and its resistome. Science of the Total Environment. 680:70-78.
Pongrac P, McNicol JW, Lilly A, Thompson JA, Wright G, Hillier S, White PJ.  2019.  Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. 434:151-165.
Wilson MJ, Hurst A, Wilkins AD, Wilson L, Bowen L.  2019.  Mineralogical evidence for multiple dust sources in an early Triassic loessite. Sedimentology..
Pasternak Z, Luchibia AO, Matan O, Dawson LA, Gafny R, Shpitzen M, Avraham S, Jurkevitch E.  2019.  Mitigating temporal mismatches in forensic soil microbial profiles. Australian Journal of Forensic Sciences. 51:685-694.
Lees KJ, Quaife T, Artz RRE, Khomik M, Sottocornola M, Kiely G, Hambley G, Hill T, Saunders M, Cowie NR et al..  2019.  A model of gross primary productivity based on satellite data suggests formerly afforested peatlands undergoing restoration regain full photosynthesis capacity after five to ten years. Journal of Environmental Management. 246:594-604.
Cui S, Fu Q, Tian CG, Zhang ZL, Hough RL, Shen ZX, Ma JM, Li YF.  2019.  Modeling primary and secondary fractionation effects and atmospheric transport of polychlorinated biphenyls through single-source emissions. Environmental Geochemistry and Health. 41:1939-1951.
Glendell M, Palarea-Albaladejo J, Pohle I, Marrero S, McCreadie B, Cameron G, Stutter MI.  2019.  Modeling the ecological impact of phosphorus in catchments with multiple environmental stressors. Journal of Environmental Quality. 48:1336-1346.
Begum K, Kuhnert M, Yeluripati JB, Ogle SM, Parton WJ, Williams SA, Pan G, Cheng K, Ali MA, Smith P.  2019.  Modelling greenhouse gas emissions and mitigation potentials in fertilized paddy rice fields in Bangladesh. Geoderma. 341:206-215.
Abdul-Salam Y, Phimister E.  2019.  Modelling the impact of market imperfections on farm household investment in stand-alone solar PV systems. World Development. 116:66-76.
Sébastien M, Phimister E, Roberts D, Santini F.  2019.  A Monte Carlo filtering application for systematic sensitivity analysis of computable general equilibrium result. Economic Systems Research. 31:404-422.
Hansen BB, Gamelon M, Albon SD, Lee AM, Stien A, Irvine RJ, Sæther BE, Loe LE, Ropstad E, Veiberg V et al..  2019.  More frequent extreme climate events stabilize reindeer population dynamics. Nature Communications. 10:ArticleNo.1616.
Brown KM, Flemsæter F, Rønningen K.  2019.  More-than-human geographies of property: Moving towards spatial justice with response-ability. Geoforum. 99:54-62.
Al-Khafaji AM, Clegg SR, Pinder AC, Luu L, Hansford KM, Seelig F, Dinnis RE, Margos G, Medlock JM, Feil EJ et al..  2019.  Multi-locus sequence typing of Ixodes ricinus and its symbiont Candidatus Midichloria mitochondrii across Europe reveals evidence of local co-cladogenesis in Scotland. Ticks and Tick-borne Diseases.. 10:52-62.
Brault ML, Petit JD, Immel F, Nicolas WJ, Glavier M, Brocard L, Gaston A, Fouche M, Hawkins TJ, Crowet JM et al..  2019.  Multiple C2 domains and transmembrane region proteins (MCTPs) tether membranes at plasmodesmata. Embo Reports. 20:ArticleNo.e47182..
Scally C, Abbas H, Ahearn T, Srinivasan J, Mezincescuu A, Rudd A, Spath N, Yucel-Finn A, Yuecel R, Oldroyd R et al..  2019.  Myocardial and systemic inflammation in acute stress-induced (Takotsubo) cardiomyopathy. Circulation. 129:1581-1592.
2018
Ludvig A, Weiss G, Sarkki S, Nijnik M, Zivojinovic I.  2018.  Mapping European and forest related policies supporting social innovation for rural settings. Forest Policy and Economics. 97:146-152.
van der Heijden G, Bel J, Craig CA, Midwood AJ, Mareschal L, Ranger J, Dambrine E, Legout A.  2018.  Measuring plant-available MG, Ca and K pools in the soil - an isotopic dilution assay. ACS Earth and Space Chemistry. 2:292-313.
Landl M, Schnepf A, Vanderborght J, Bengough AG, Bauke SL, Lobet G, Bol R, Vereecken H.  2018.  Measuring root system traits of wheat in 2D images to parameterize 3D root architecture models. Plant and Soil. 425:457-477.
de Moraes MT, Bengough AG, Debiasi H, Franchini JC, Levien R, Schnepf A, Leitner D.  2018.  Mechanistic framework to link root growth models with weather and soil physical properties, including example applications to soybean growth in Brazil. Plant and Soil. 428:67-92.
Foito A, Stewart D.  2018.  Metabolomics: A high-throughput screen for biochemical and bioactivity diversity in plants and crops. Current Pharmaceutical Design. 24:2043-2054.
Cameron A, Logie L, Patel K, Erhardt S, Bacon S, Middleton P, Harthill J, Forteath C, Coats JT, Kerr C et al..  2018.  Metformin selectively targets redox control of complex I energy transduction. Redox Biology. 14:187-197.
Cameron A, Logie L, Patel K, Erhardt S, Bacon S, Middleton P, Harthill J, Forteath C, Coats JT, Kerr C et al..  2018.  Metformin selectively targets redox control of complex I energy transduction. Redox Biology. 14:187-197.
Hollaway MJ, Beven KJ, Benskin CMH, Collins AL, Evans R, Falloon PD, Forber KJ, Hiscock KM, Kahana R, Macleod CJA et al..  2018.  A method for uncertainty constraint of catchment discharge and phosphorus load estimates. Hydrological Processes. 32:2779-2787.
Greenfield LM, Hill PW, Paterson E, Baggs EM, Jones DL.  2018.  Methodological bias associated with soluble protein recovery from soil. Scientific Reports. 8:ArticleNo.11186.
Dupuy LX, Mimault M, Patko D, Ladmiral V, Ameduri B, MacDonald MP, Ptashnyk M.  2018.  Micromechanics of root development in soil. Current Opinion in Genetics and Development. 51:18-25.
Kettle H, Holtrop G, Louis P, Flint HJ.  2018.  microPop: Modelling microbial populations and communities in R. Methods in Ecology and Evolution. 9:399-409.
Pongrac P, McNicol JW, Lilly A, Thompson JA, Wright G, Hillier S, White PJ.  2018.  Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. Published online..
Pasternak Z, Luchibia AO, Matan O, Dawson LA, Gafny R, Shpitzen M, Avraham S, Jurkevitch E.  2018.  Mitigating temporal mismatches in forensic soil microbial profiles. Australian Journal of Forensic Sciences. Published online..
Mitchell K, Trakal L, Sillerova H, Avelar-Gonzalez FJ, Guerrero-Barrera AL, Hough RL, Beesley L.  2018.  Mobility of As, Cr and Cu in a contaminated grassland soil in response to diverse organic amendments; a sequential column leaching experiment. Applied Geochemistry. 88:95-102.
Tarfasa S, Balana BB, Tefera T, Woldeamanuel T, Moges A, Dinato M, Black HIJ.  2018.  Modeling smallholder farmers' preferences for soil management measures : A case study from South Ethiopia. Ecological Economics. 145:410-419.
De la Fuente Canto C, Kalogiros DI, Ptashnyk M, George TS, Waugh R, Bengough AG, Russell J, Dupuy LX.  2018.  Morphological and genetic characterisation of the root system architecture of selected barley recombinant chromosome substitution lines using an integrated phenotyping approach. Journal of Theoretical Biology. 447:84-97.
de Ruiter H, Macdiarmid JI, Matthews RB, Smith P.  2018.  Moving beyond calories and protein: Micronutrient assessment of UK diets and land use. Global Environmental Change - Human and Policy Dimensions. 52:108-116.
Wallach D, Martre P, Liu B, Asseng S, Ewert F, Thorburn PJ, Ittersum M, Aggarwal PK, Ahmed M, Basso B et al..  2018.  Multimodel ensembles improve predictions of crop-environment-management interactions. Global Change Biology. 24:5072-5083.
Kalinina NO, Makarova S, Makhotenko A, Love AJ, Taliansky M.  2018.  The multiple functions of the nucleolus in plant development, disease and stress responses. Frontiers in Plant Science. 9:ArticleNo.132..
Lenormand M, Luque S, Langemeyer J, Tenerelli P, Zulian G, Aalders IH, Chivulescu S, Clemente P, Dick J, van Dijk J et al..  2018.  Multiscale socio-ecological networks in the age of information. PLoS ONE. 13:ArticleNo.e02056672.
Yan T, O'Brien P, Shelton JM, Whelen AC, Pagaling E.  2018.  Municipal wastewater as a microbial surveillance platform for enteric diseases: a case study for salmonella and salmonellosis. Environmental Science and Technology. 52:4869-4877.
2017
Ockenden MC, Hollaway MJ, Beven KJ, Collins AL, Evans R, Falloon PD, Forber KJ, Hiscock KM, Kahana R, Macleod CJA et al..  2017.  Major agricultural changes required to mitigate phosphorus losses under climate change. Nature Communications. 8:ArticleNo,161.
Ockenden MC, Hollaway MJ, Beven KJ, Collins AL, Evans R, Falloon PD, Forber KJ, Hiscock KM, Kahana R, Macleod CJA et al..  2017.  Major agricultural changes required to mitigate phosphorus losses under climate change. Nature Communications. 8:ArticleNo,161.
Hurst CH, Turnbull D, Plain F, Fuller W, Hemsley PA.  2017.  Maleimide scavenging enhances determination of protein S-palmitoylation state in acyl-exchange methods. Biotechniques. 62:69-75.
Simpson CG, Cullen DW, Hackett CA, Smith K, Hallett P, McNicol J, Woodhead M, Graham J.  2017.  Mapping and expression of genes with a role in raspberry fruit ripening and softening. Theoretical and Applied Genetics. 130:557-572..
da Silva WL, Ingram J, Hackett CA, Coombs JJ, Douches D, Bryan GJ, De Jong W, Gray S.  2017.  Mapping loci that control tuber and foliar symptoms caused by PVY in autotetraploid potato (Solanum tuberosum L.). G3-Genes Genomes Genetics. 7:3587-3595.
Aitkenhead MJ.  2017.  Mapping peat in Scotland with remote sensing and site characteristics. European Journal of Soil Science. 68:28-38.
Aitkenhead MJ.  2017.  Mapping peat in Scotland with remote sensing and site characteristics. European Journal of Soil Science. 68:28-38.
Veiberg V, Loe LE, Albon SD, Irvine RJ, Tveraa T, Ropstad E, Stien A.  2017.  Maternal winter body mass and not spring phenology determine annual calf production in an Arctic herbivore. Oikos. 126:980-987.
Mantelin S, Bellafiore S, Kyndt T.  2017.  Meloidogyne graminicola: a major threat to rice agriculture. Molecular Plant Pathology. 18:3-15.
Dawson IK, van Breugel P, Coe R, Kindt R, van Zonneveld M, Lilleso JPB, Graudal L, Muchugi A, Russell J, Jamnadass R.  2017.  A meta-analysis of molecular marker genetic datasets for eastern Africa trees supports the utility of potential natural vegetation maps for planning climate-smart restoration initiatives. Tree Genetics and Genomes. 13:ArticleNo.71.
Joynson R, Pritchard L, Osemwekha E, Ferry N.  2017.  Metagenomic analysis of the gut microbiome of the common black slug arion ater in search of novel lignocellulose degrading enzymes. Frontiers in Microbiology. 9:ArticleNo.2181.
Williams D, Britten A, McCallum S, Jones H, Aitkenhead M, Karley A, Loades K, Prashar A, Graham J.  2017.  A method for automatic segmentation and splitting of hyperspectral images of raspberry plants collected in field conditions. Plant Methods. 13:ArticleNo.74.
Rowe EC, Jones L, Dise NB, Evans CD, Mills G, Hall J, Stevens CJ, Mitchell RJ, Field C, Caporn SJ et al..  2017.  Metrics for evaluating the ecological benefits of decreased nitrogen deposition. Biological Conservation. 212:454-463.
Buddendorf WB, Malcolm IA, Geris J, Wilkinson M, Soulsby C.  2017.  Metrics to assess how longitudinal channel network connectivity and in-stream Atlantic salmon habitats are impacted by hydropower regulation. Hydrological Processes. 31:2132-2142.
Demaneche S, Schauser L, Dawson LA, Franqueville L, Simonet P.  2017.  Microbial soil community analyses for forensic science: application to a blind test. Forensic Science International. 270:153-158.
Palomares-Rius JE, Cantalapiedra-Navarette C, Archidona-Yuste A, Blok VC, Castillo P.  2017.  Mitochondrial genome diversity in dagger and needle nematodes (Nematode: Longidoridae). Scientific Reports. 7
Palomares-Rius JE, Cantalapiedra-Navarette C, Archidona-Yuste A, Blok VC, Castillo P.  2017.  Mitochondrial genomes diversity in dagger and needle nematodes (Nematode: Longidoridae). Scientific Reports. 7
Sankhla IS, Tak N, Meghwal RR, Choudhary S, Tak A, Rathi S, Sprent JI, James EK, Gehlot HS.  2017.  Molecular characterization of nitrogen fixing microsymbionts from root nodules of Vachellia (Acacia) jacquemontii, a native legume from the Thar Desert of India. Plant and Soil. 410:21-40.
Sankhla IS, Tak N, Meghwal RR, Choudhary S, Tak A, Rathi S, Sprent JI, James EK, Gehlot HS.  2017.  Molecular characterization of nitrogen fixing microsymbionts from root nodules of Vachellia (Acacia) jacquemontii, a native legume from the Thar Desert of India. Plant and Soil. 410:21-40.
Ojha A, Tak N, Rathi S, Chouhan B, Rao SR, Barik SK, Joshi SR, Sprent JS, James EK, Gehlot HS.  2017.  Molecular characterization of novel Bradyrhizobium strains nodulating ErioSema Chinese and Flemingia vestita, important unexplored native legumes of the sub-Himalayan region (Meghalaya) of India. Systematic and Applied Microbiology. 40:334-344.
Waylen KA, Blackstock KL.  2017.  Monitoring for adaptive management or modernity: Lessons from recent initiatives for holistic environmental management. Environmental Policy and Governance. 27:311-324.
Jobarteh ML, McArdle HJ, Holtrop G, Sise EA, Prentice AM, Moore SE.  2017.  mRNA levels of placental iron and zinc transporter genes are upregulated in Gambian women with low iron and zinc status. Journal of Nutrition. 147:1401-1409.
Kareem R, Cubillas P, Gluyas J, Bowen L, Hillier S, Greenwell HC.  2017.  Multi-technique approach to the petrophysical characterization of Berea sandstone core plugs (Cleveland Quarries, USA). Journal of Petroleum Science and Engineering. 149:436-455.
Tomlekova NB, White PJ, Thompson JA, Penchev EA, Nielen S.  2017.  Mutation increasing beta-carotene concentrations does not adversely affect concentrations of essential mineral elements in pepper fruit. PLoS ONE. 12:e0172180.
2016
Andriotis VME, Saalbach G, Waugh R, Field RA, Smith AM.  2016.  The Maltase involved in starch metabolism in barley endosperm is encoded by a single gene. PLoS One. 11:e0151642.
Fletcher J, Foster A, Goddard P, McSloy A.  2016.  Managing antler problems in deer. In Practice. 38:513-519.
Rutgers M, Orgiazzi A, Gardi C, Rombke J, Jansch S, Keith AM, Neilson R, Boag B, Schmidt O, Murchie AK et al..  2016.  Mapping earthworm communities in Europe. Applied Soil Ecology. 97:98-111.
Aitkenhead MJ, Coull MC.  2016.  Mapping soil carbon stocks across Scotland using a neural network model. Geoderma. 262:187-188.
Allinson D, Irvine KN, Edmondson JL, Tiwary A, Hill G, Morris J, Bell M, Davies ZG, Firth SK, Fisher J et al..  2016.  Measurement and analysis of household carbon: the case of a UK city. Applied Energy. 164:871-881.
Dupuy LX, Silk WK.  2016.  Mechanisms of early microbial establishment on growing root surfaces. Vadose Zone Journal. 15
Prorok VV, Dacenko OI, Bulavin LA, Poperenko LV, White PJ.  2016.  Mechanistic interpretation of the varying selectivity of Cesium-137 and potassium uptake by radish (Raphanus sativus L.) under field conditions near Chernobyl. Journal of Environmental Radioactivity. 152:85-91.
Prigigallo MI, Abdelfattah A, Cacciola SO, Faedda R, Sanzani SM, Cooke DEL, Schena L.  2016.  Metabarcoding analysis of phytophthora diversity using genus-specific primers and 454 pyrosequencing. Phytopathology. 106:305-313.
Cuttle SP, Newell-Price JP, Harris D, Chadwick DR, Shepherd MA, Anthony SGA, Macleod CJA, Haygarth PM, Chambers BJ.  2016.  A method-centric 'User Manual' for the mitigation of diffuse water pollution from agriculture. Soil Use and Management. 32:162-171.
Conniff A, Craig T.  2016.  A methodological approach to understanding the wellbeing and restorative benefits associated with greenspace. Urban Forestry and Urban Greening. 19:103-109.
Van der Linden I, Cottyn B, Uyttendaele M, Vlaemynck G, Heyndrickx M, Maes M, Holden N.  2016.  Microarray-based screening of differentially expressed genes of e. coli O157:H7 sakai during preharvest survival on butterhead lettuce. Agriculture-Basel. 6
Delgado-Baquerizo M, Maestre FT, Reich PB, Jeffries TC, Gaitán JJ, Encinar D, Berdugo M, Campbell CD, Singh BK.  2016.  Microbial diversity drives multifunctionality in terrestrial ecosystems. Nature Communications. 7
Pan FX, Li YY, Chapman SJ, Khan S, Yao HY.  2016.  Microbial utilization of rice straw and its derived biochar in a paddy soil. Science of the Total Environment.
Stutter MI, Cairns J.  2016.  The mineralisation of dissolved organic matter recovered from temperate waterbodies during summer. Aquatic Sciences. 78:447-482.
Simonsson M, Court M, Bergholm J, Lemarchand D, Hillier S.  2016.  Mineralogy and biogeochemistry of potassium in the Skogaby experimental forest, southwest Sweden: pools, fluxes and K/Rb ratios in soil and biomass. Biogeochemistry. Published online..
Thompson CW, Aspinall P, Roe J, Robertson L, Miller DR.  2016.  Mitigating stress and supporting health in deprived urban communities: the importance of green space and the social environment. International Journal of Environmental Research and Public Health. 13:ArticleNo.440.
Phillips WS, Brown AMV, Howe DK, Peetz AB, Blok VC, Denver DR, Zasada IA.  2016.  The mitochondrial genome of Globodera ellingtonae is composed of two circles with segregated gene content and differential copy numbers. BMC Genomics. 17:ArticleNo.706..
Mollon LC, Norton GJ, Trakal L, Moreno-Jimenez E, Elouali FZ, Hough RL, Beesley L.  2016.  Mobility and toxicity of heavy metal(loid)s arising from contaminated wood ash application to a pasture grassland soil. Environmental Pollution. 218:419-427.
Vereecken H, Schnepf A, Hopmans JW, Javaux M, Or D, Roose DOT, Vanderborght J, Young MH, Amelung W, Aitkenhead M et al..  2016.  Modeling soil processes: Review, key challenges, and new perspectives. Vadose Zone Journal. 15
Senapati N, Chabbi A, Giostri AF, Yeluripati JB, Smith P.  2016.  Modelling nitrous oxide emissions from mown-grass and grain-cropping systems: Testing and sensitivity analysis of DailyDayCent using high frequency measurements. Science of the Total Environment. 572:955-977.
Melo PC, Copus A, Coombes M.  2016.  Modelling small area at-risk-of-poverty rates for the UK using the World Bank methodology and the EU-SILC. Applied Spatial Analysis and Policy. 9:97-117.
Polhill JG, Filatova T, Schlüter M, Voinov A.  2016.  Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
Polhill JG, Filatova T, Schluter M, Voinov A.  2016.  Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
Hopkins M, Finlayson G, Duarte C, Whybrow S, Ritz P, Horgan GW, Blundell JE, Stubbs RJ.  2016.  Modelling the associations between fat-free mass, resting metabolic rate and energy intake in the context of total energy balance. International Journal of Obesity. 40:312-318.
Li S, Gilbert L, Harrison PA, Rounsevell MDA.  2016.  Modelling the seasonality of Lyme disease risk and the potential impacts of a warming climate within the heterogeneous landscapes of Scotland. Journal of the Royal Society Interface. 13:ArticleNo.20160140.
McKenzie BM, Braga RA, Coelho DEC, Krol M, Horgan GW.  2016.  Moire as a low-cost, robust, optical-technique to quantify soil surface condition. Soil and Tillage Research. 158:147-155.
Sahi G, Hedley PP, Morris J, Loake GJ, MacFarlane SA.  2016.  Molecular and biochemical examination of spraing disease in potato tuber in response to Tobacco rattle virus infection. Molecular Plant-Microbe Interactions (MPMI). 29:822-828.
Oliver DM, Hanley ND, van Niekerk M, Kay D, Heathwaite AL, Rabinovici SJM, Kinzelman JL, Fleming LE, Porter J, Shaikh S et al..  2016.  Molecular tools for bathing water assessment in Europe: Balancing social science research with a rapidly developing environmental science evidence-base. Ambio. 45:52-62.
Oliver DM, Hanley ND, van Niekerk M, Kay D, Heathwaite AL, Rabinovici SJM, Kinzelman JL, Fleming LE, Porter J, Shaikh S et al..  2016.  Molecular tools for bathing water assessment in Europe: balancing social science research with a rapidly developing environmental science evidence-base. Ambio. 45:52-62.
de Jesus DS, Oliveira CMG, Roberts D, Blok V, Neilson R, Prior T, Balbino HM, MacKenzie KM, Oliveira RDD.  2016.  Morphological and molecular characterisation of Aphelenchoides besseyi and A. fujianensis (Nematoda: Aphelenchoididae) from rice and forage grass seeds in Brazil. Nematology. 18:337-356.
Yuan HM, Blackwell M, McGrath S, George TS, Granger SH, Hawkins JMB, Dunham S, Shen JB.  2016.  Morphological responses of wheat (Triticum aestivum L.) roots to phosphorus supply in two contrasting soils. Journal of Agricultural Science. 154:98-108.
Tak N, Awasthi E, Bissa G, Meghwal RR, James EK, Sprent JS, Gehlot HS.  2016.  Multi locus sequence analysis and symbiotic characterization of novel Ensifer strains nodulating Tephrosia spp. In the Indian Thar Desert. Systematic and Applied Microbiology. 39:534-545.
Ruane AC, Hudson NI, Asseng S, Camarrano D, Ewert F, Martre P, Boote KJ, Thorburn PJ, Aggarwal PK, Angulo C et al..  2016.  Multi-wheat-model ensemble responses to interannual climate variability. Environmental Modelling and Software. 81:86-101.
2015
Rutgers M, Orgiazzi A, Gardi C, Rombke J, Jansch S, Keith AM, Neilson R, Boag B, Schmidt O, Murchie AK et al..  2015.  Mapping earthworm communities in Europe. Applied Soil Ecology. 97:98-111.
Aitkenhead MJ, Coull MC.  2015.  Mapping soil carbon stocks across Scotland using a neural network model. Geoderma. 262:187-188.
Hancock RD, Hogenhout S, Foyer CH.  2015.  Mechanisms of plant-insect interaction Preface. Journal of Experimental Botany. 66:421-424.
Driver T, Bajhaiya AK, Allwood JW, Goodacre R, Pittman JK, Dean AP.  2015.  Metabolic responses of eukaryotic microalgae to environmental stress limit the ability of FT-IR spectroscopy for species identification. Algal Research- Biomass Biofuels and Bioproducts. 11:148-155.
Bohn T, McDougall GJ, Alegria A, Alminger M, Arrigoni E, Aura AM, Brito C, Cilla A, El SN, Karakaya S et al..  2015.  Mind the gap-deficits in our knowledge of aspects impacting the bioavailability of phytochemicals and their metabolites - a position paper focusing on carotenoids and polyphenols. Molecular Nutrition and Food Research. 59:1307-1323.
Chamen WCT, Moxey AP, Towers W, Balana BB, Hallett PD.  2015.  Mitigating arable soil compaction: A review and analysis of available cost and benefit data. Soil and Tillage Research. 146:10-25.
Vanga BR, Ramakrishnan P, Butler RC, Toth IK, Ronson CW, Jacobs JME, Pitman AR.  2015.  Mobilization of horizontally acquired island 2 is induced in planta in the phytopathogen Pectobacterium atrosepticumSCRI1043 and involves the putative relaxase ECA0613 and quorum sensing. Environmental Microbiology. 17:4730-4744.
McLellan CR, Worton BJ, Deasy W, Birch ANE.  2015.  Modelling larval movement data from individual bioassays. Biometrical Journal. 57:485-501.
Kettle H, Louis P, Holtrop G, Duncan SH, Flint HJ.  2015.  Modelling the emergent dynamics and major metabolites of the human colonic microbiota. Environmental Microbiology. 17:1615-1630.
Shepherd LVT, Hackett CA, Alexander CA, McNicol JW, Sungurtas JA, Stewart D, McCue K, Belknap WR, Davies HV.  2015.  Modifying glycoalkaloid content in transgenic potato - Metabolome impacts. Food Chemistry. 187:437-443.
Prigigallo MI, Mosca S, Cacciola SO, Cooke DEL, Schena L.  2015.  Molecular analysis of Phytophthora diversity in nursery-grown ornamental and fruit plants. Plant Pathology. 64:1308-1319.
Wells B, Shaw H, Innocent G, Guido S, Hotchkiss E, Parigi M, Opsteegh M, Green J, Gillespie S, Innes EA et al..  2015.  Molecular detection of Toxoplasma gondii in water samples from Scotland and a comparison between the 529bp real-time PCR and ITS1 nested PCR. Water Research. 87:175-181.
Flemsaeter F, Setten G, Brown KM.  2015.  Morality, mobility and citizenship: Legitimising mobile subjectivities in a contested outdoors. Geoforum. 64:342-350.
Novo P, Dumont A, Willaarts B, Lopez-Gunn E.  2015.  More cash and jobs per illegal drop? The legal and illegal water footprint of the Western Mancha Aquifer (Spain) Environmental Science and Policy. 51:256-266.
Viger M, Hancock RD, Miglietta F, Taylor G.  2015.  More plant growth but less plant defence? First global gene expression data for plants grown in soil amended with biochar Global Change Biology Bioenergy. 7:658-672.
Macadam CR, Stockan JA.  2015.  More than just fish food: ecosystem services provided by freshwater insects. Ecological Entomology. 40:113-124.
Amar D, Frades I, Diels T, Zaltzman D, Ghatan N, Hedley PE, Alexandersson E, Tzfadia O, Shamir R.  2015.  The MORPH-R web server and software tool for predicting missing genes in biological pathways. Physiologia Plantarum. 155:12-20.
Marselle MR, Irvine KN, Lorenzo-Arribas A, Warber SL.  2015.  Moving beyond green: Exploring the relationship of environment type and indicators of perceived environmental quality on emotional well-being following group walks. International Journal of Environmental Research and Public Health. 12:106-130.
Martre P, Wallach D, Asseng S, Ewert F, Jones JW, Rotter RP, Boote KJ, Ruane AC, Thorburn PJ, Cammarano D et al..  2015.  Multimodel ensembles of wheat growth: many models are better than one. Global Change Biology. 21:911-925.
2014
Thomson K, Vellinga N, Slee B, Ibiyemi A.  2014.  Mapping socio-economic performance in rural Scotland. Scottish Geographical Journal. 130:1-21.
Spezia L, Cooksley SL, Brewer MJ, Donnelly D, Tree A.  2014.  Mapping species distributions in one dimension by non homogeneous hidden Markov models: freshwater pearl mussels in the River Dee. Environmental and Ecological Statistics. 21:487-505.
Stubbs RJ, O'Reilly LM, Whybrow S, Fuller Z, Johnstone AM, Livingstone MBE, Ritz P, Horgan GW.  2014.  Measuring the difference between actual and reported food intakes in the context of energy balance under laboratory conditions. British Journal of Nutrition. 111:2032-2043.
Rataj K, Simpson GG.  2014.  Message ends: RNA Processing and flowering time control. Journal of Experimental Botany. 65:353-363.
Sweetman C, Sadras VO, Hancock RD, Soole KL, Ford CM.  2014.  Metabolic effects of elevated temperature on organic acid degradation in ripening Vitis vinifera fruit. Journal of Experimental Botany. 65:5975-5988.
Buccianti A, Nisi B, Martin-Fernandez JA, Palarea-Albaladejo J.  2014.  Methods to investigate the geochemistry of groundwaters with values for nitrogen compounds below the detection limit. Journal of Geochemical Exploration. 141:78-88.
Chen X, Daniell TJ, Neilson R, O'Flaherty V, Griffiths BS.  2014.  Microbial and microfaunal communities in phosphorus limited, grazed grassland change composition but maintain homeostatic nutrient stoichiometry. Soil Biology and Biochemistry. 75:94-101.
Sun B, Roberts DM, Dennis PG, Caul S, Daniell TJ, Hallett PD, Hopkins DW.  2014.  Microbial properties and nitrogen contents of arable soils under different tillage regimes. Soil Use and Management. 30:152-159.
Snell HSK, Robinson D, Midwood AJ.  2014.  Minimising methodological biases to improve the accuracy of partitioning soil respiration using natural abundance 13C. Rapid Communications in Mass Spectrometry. 28:2341-2351.
Collins AL, Stutter MI, Kronvang B.  2014.  Mitigating diffuse pollution from agriculture: International approaches and experience. Science of the Total Environment. 468-469:1173-1177.
Senapati N, Hulugalle NR, Smith P, Wilson BR, Yeluripati JB, Daniel H, Ghosh S, Lockwood P.  2014.  Modelling soil organic carbon storage with RothC in irrigated Vertisols under cotton cropping systems in the sub-tropics. Soil and Tillage Research. 143:38-49.
Spezia L, Cooksley SL, Brewer MJ, Donnelly D, Tree A.  2014.  Modelling species abundance in a river by Negative Binomial hidden Markov models. Computational Statistics and Data Analysis. 71:599-614.
McIntyre N, Ballard C, Bruen M, Bulygina N, Buytaert W, Cluckie I, Dunn SM, Ehret U, Ewen J, Gelfan A et al..  2014.  Modelling the hydrological impacts of rural land use change. Hydrology Research. 45:737-754.
Helliwell RC, Aherne J, Nisbet TR, MacDougall G, Broadmeadow S, Sample J, Jackson-Blake L, Doughty R.  2014.  Modelling the long-term response of stream water chemistry to forestry in Galloway, Southwest Scotland. Ecological Indicators. 37:396-411.
Gamado KM, Streftaris G, Zachary S.  2014.  Modelling under-reporting in epidemics. Journal of Mathematical Biology. 69:737-765.
Wiesel L, Newton AC, Elliot I, Booty D, Gilroy EM, Birch PRJ, Hein I.  2014.  Molecular effects of resistance elicitors from biological origin and their potential for crop protection. Frontiers in Plant Science. 5
Viger M, Hancock RD, Miglietta F, Taylor G.  2014.  More plant growth but less plant defence? First global gene expression data for plants grown in soil amended with biochar Global Change Biology Bioenergy. Published online.
Chmielewska B, Janiak A, Karcz J, Guzy-Wrobelska J, Forster BP, Nawrot M, Rusek A, Smyda P, Kedziorski P, Maluszynski M et al..  2014.  Morphological, genetic and molecular characteristics of barley root hair mutants. Journal of Applied Genetics. 55:433-447.
Rodriguez PA, Stam R, Warbroek T, Bos JIB.  2014.  Mp10 and Mp42 from the aphid species Myzus persicae trigger plant defenses in Nicotiana benthamiana through different activities. Molecular Plant Microbe Interactions. 27:30-39.
Lisboa FJG, Peres-Neto PR, Chaer GM, Jesus EC, Mitchell RJ, Chapman SJ, Berbara RLL.  2014.  Much beyond Mantel: bringing Procrustes Association metric to the plant and soil ecologist's toolbox. PLoS ONE. 9:e101238.
van Noordwijk M, Matthews RB, Agus F, Farmer J, Verchot L, Hergoualc'h K, Persch S, Tata HL, Khasanah NM, Widayati A et al..  2014.  Mud, muddle and models in the knowledge value-chain to action on tropical peatland conservation. Mitigation and Adaptation Strategies for Global Change. 19:887-905.
2013
Hastings E, Potts T.  2013.  Marine litter: Progress in developing an integrated policy approach in Scotland. Marine Policy. 42:49-55.
White PJ, George TS, Gregory PJ, Bengough AG, Hallett PD, McKenzie BM.  2013.  Matching roots to their environment. Annals of Botany. 112:207-222.
Andrade LP, Rhind SM, Rae MT, Kyle CE, Jowett J, Lea RG.  2013.  Maternal undernutrition does not alter Sertoli cell numbers or the expression of key developmental markers in the mid-gestation ovine fetal testis. Journal of Negative Results in BioMedicine. 12
Turner SP, Nath M, Horgan GW, Edwards SA.  2013.  Measuring chronic social tension in groups of growing pigs using inter-individual distances. Applied Animal Behaviour Science. 146:26-36.
Wishart J, George TS, Brown LK, Ramsay G, Bradshaw JE, White PJ, Gregory PJ.  2013.  Measuring variation in potato roots in both field and glasshouse: the search for useful yield predictors and a simple screen for root traits. Plant and Soil. 368:231-249.
Cubitt MF, Hedley PE, Williamson NR, Morris JA, Campbell E, Toth IK, Salmond GPC.  2013.  A metabolic regulator modulates virulence and quorum sensing signal production in Pectobacterium atrosepticum. Molecular Plant Microbe Interactions. 26:356-366.
Mayor DJ, Gray NB, Elver-Evans J, Midwood AJ, Thornton B.  2013.  Metal-macrofauna interactions determine microbial community structure and function in copper contaminated sediments. PLoS ONE. 8:e64940.
Bryce R, van der Wal R, Mitchell R, Lambin X.  2013.  Metapopulation dynamics of a burrowing herbivore drive spatio-temporal dynamics of riparian plant communities. Ecosystems. 16:1165-1177.
Ricci P, Rooke JA, Nevison I, Waterhouse A.  2013.  Methane emissions from beef and dairy cattle: quantifying the effect of physiological stage and diet characteristics. Journal of Animal Science. 91:5379-5389.
van der Heijden GA, Legout A, Midwood AJ, Craig CA, Pollier B, Ranger J, Dambrine E.  2013.  Mg and Ca root uptake and vertical transfer in soils assessed by an in situ ecosystem scale multi-isotopic (26Mg & 44Ca) tracing experiment in a beech stand (Breuil-Chenue, France). Plant and Soil. 369:33-45.
Roberts WM, Matthews RA, Blackwell MSA, Peukert S, Collins AL, Stutter MI, Haygarth PM.  2013.  Microbial biomass phosphorus contributions to phosphorus solubility in riparian vegetated buffer strip soils. Biology and Fertility of Soils. 49:1237-1241.
Andersen R, Chapman SJ, Artz RRE.  2013.  Microbial communities in natural and disturbed peatlands: a review. Soil Biology and Biochemistry. 57:979-994.
Dennis PG, Sparrow AD, Gregorich EG, Novis P, Elberling B, Greenfield LG, Hopkins DW.  2013.  Microbial responses to carbon and nitrogen supplementation in an Antarctic dry valley soil. Soil Biology and Biochemistry. 25:55-61.
Dungait JAJ, Ghee C, Rowan JS, McKenzie BM, Hawes C, Dixon ER, Paterson E, Hopkins DW.  2013.  Microbial responses to the erosional redistribution of soil organic carbon in arable fields. Soil Biology and Biochemistry. 60:195-201.
Shaw RF, Pakeman RJ, Young MR, Iason GR.  2013.  Microsite affects willow sapling recovery from bank vole (Myodes glareolus) herbivory, but does not affect grazing risk. Annals of Botany. 112:731-739.
Smith SW, Robertson AHJ, Meharg AA, Pakeman RJ, Johnson D, Woodin SJ, van der Wal R.  2013.  Milling plant and soil material in plastic tubes over-estimates carbon and under-estimates nitrogen concentrations. Plant and Soil. 369:509-513.
Flynn KJ, Stoecker DK, Mitra A, Raven JA, Glibert PM, Hansen PJ, Graneli E, Burkholder JM.  2013.  Misuse of the phytoplanktonzooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types. Journal of Plankton Research. 35:3-11.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.