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A
Alday JG, Cox ES, Pakeman RJ, Harris MP, Le Duc MG, Marrs RH.  2013.  Overcoming resistance and resilience of an invaded community is necessary for effective restoration: a multi-site bracken control study. Journal of Applied Ecology. 50:156-167.
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Barakate A, Stephens J.  2016.  An overview of CRISPR-based tools and their improvements: new opportunities in understanding plant-pathogen interactions for better crop protection. Frontiers in Plant Science. 7
Bartlett L, Montague G, McNamara G, Davies B, Fiore A, Sturrock K, Ledbetter M, Hein I, Mantelin S, Harrower B et al..  2020.  Operational considerations for hot-washing in potato crisp manufacture. Food and Bioproducts Processing. 124:387-396.
Beale CM, Lennon JJ, Gimona A.  2008.  Opening the climate envelope reveals no macroscale associations with climate in European birds. Proceedings of the National Academy of Sciences, USA. 105:14908-14912.
Birch PRJ, Boevink P, Gilroy E, Hein I, Pritchard L, Whisson SC.  2008.  Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistance. Current Opinion in Plant Biology. 11:373-379. Abstract
Black K, Tziboula-Clarke A, White PJ, Iannetta PPM, Walker G.  2021.  Optimised processing of faba bean (Vicia faba L.) kernels as a brewing adjunct. Journal of the Institute of Brewing. 127:13-20.
Blackstock KL, Carter CE.  2007.  Operationalising sustainability science for a sustainability directive? Reflecting on three pilot projects Geographical Journal. 173(4):343-357.
Boag B, Hernandez A, Cattadori IM.  2013.  Observations on the epidemiology and interactions between myxomatosis, coccidiosis and helminth parasites in a wild rabbit population in Scotland. European Journal of Wildlife Research. 59:557-562.
Boevink PC, McLellan H, Gilroy EM, Naqvi S, He Q, Yang LN, Wang XD, Turnbull D, Armstrong MR, Tian ZD et al..  2016.  Oomycetes seek help from the plant: Phytophthora infestans effectors target host susceptibility factors. Molecular Plant. 9:636-638.
Buchanan HAS, Kerr WJ, Meier-Augenstein W, NicDaeid NN.  2011.  Organic impurities, stable isotopes, or both: a comparison of instrumental and pattern recognition techniques for the profiling of 3,4-methylenedioxymethamphetamine. Analytical Methods. 3:2279-2288.
Burns VA.  2019.  Oceanic embodiments: living ENSO events in coastal TImor-Leste. Political Geography. 70:102-116.
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Campbell R, Morris WL, Misawa N, Ducreux LJM, Morris JA, Hedley PE, Fraser PD, Taylor MA.  2015.  Optimising ketocarotenoid production in potato tubers: effect of genetic background, transgene combinations and environment. Plant Science. 234:27-37.
Carvalho A, Ribeiro H, Mayes R, Guedes A, Abreu I, Noronha F, Dawson LA.  2013.  Organic matter characterization of sediments in two river beaches from Northern Portugal for forensic application. Forensic Science International. 233:403-415.
Cayuela-Sanchez JA, Palarea-Albaladejo J, Garcia-Martin JF, Perez-Camino MC.  2019.  Olive oil nutritional labeling by using Vis/NIR spectroscopy and compositional statistical methods. Innovative Food Science and Emerging Technologies. 51:139-147.
Clark KE, Hartley SE, Brennan RM, MacKenzie K, Johnson SN.  2012.  Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status. Agricultural and Forest Entomology. 14:157-163.
Cockell CS, Raven JA.  2007.  Ozone and life on the Archaean earth. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1889-1901. Abstract
Colas I, Darrier B, Arrieta M, Mittmann SU, Ramsay L, Sourdille P, Waugh R.  2017.  Observation of extensive chromosome axis remodeling during the "diffuse-phase" of meiosis in large genome cereals. Frontiers in Plant Science. 8:ArticleNo.1235.
Currie M, Colley K, Irvine KN.  2021.  Outdoor recreation for older adults in Scotland: qualitatively exploring the multiplicity of constraints to participation. International Journal of Environmental Research and Public Health. 18:ArticleNo.7705.
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Day-Stirrat RJ, Milliken KL, Dutton SP, Loucks RG, Hillier S, Aplin AC, Schleicher AM.  2010.  Open-system chemical behavior in deep Wilcox Group mudstones, Texas Gulf. Marine and Petroleum Geology.. 27(9):1804-1818.
Dimitrova-Petrova K, Geris J, Wilkinson ME, Rosolem R, Verrot L, Lilly A, Soulsby C.  2020.  Opportunities and challenges in using catchment-scale storage estimates from cosmic ray neutron sensors for rainfall-runoff modelling. Journal of Hydrology. 586:ArticleNo.124878.
Dobson P, Graham J, Stewart D, Brennan RM, Hackett CA, McDougall GJ.  2012.  Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry. Journal of Agricultural and Food Chemistry. 60:5360-5366.
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Evans CD, Peacock M, Baird AJ, Artz RRE, Burden A, Callaghan N, Chapman PJ, Cooper HM, Coyle M, Craig E et al..  2021.  Overriding importance of water table in the greenhouse gas balance of managed peatlands. Nature. Published online.
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Faoro H, Menegazzo RR, Battistoni F, Gyaneshwar P, do Amaral FP, Taulé C, Rausch S, Galvão PG, de los Santos C, Mitra S et al..  2017.  The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
Faoro H, Menegazzo RR, Battistoni F, Gyaneshwar P, do Amaral FP, Taulé C, Rausch S, Galvão PG, de los Santos C, Mitra S et al..  2017.  The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
Fischer A, Sandstrom C, Delibes-Mateos M, Arroyo B, Tadie D, Randall D, Hailu F, Lowassa A, Mshua M, Kerezi V et al..  2013.  On the multifunctionality of hunting - an institutional analysis of eight cases from Europe and Africa. Journal of Environmental Planning and Management. 56:531-552.
Fischer A, Glenk K.  2011.  One model fits all? - On the moderating role of emotional engagement and confusion in the elicitation of preferences for climate change adaptation policies Ecological Economics. 70:1178-1188.
Fischer A.  2010.  On the role of ideas of human nature in shaping attitudes towards environmental governance. Human Ecology. 38(1):123.-135.
Fischer A, Wakjira TD, Weldesemaet YT, Ashenafi ZT.  2014.  On the interplay of actors in the co-management of natural resources - a dynamic perspective. Journal of Environmental Management. 64:158-168.
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George TS, Giles CD, Menezes-Blackburn D, Condron LM, Gama-Rodrigues AC, Jaisi D, Lang F, Neal AL, Stutter MI, Almeida DS et al..  2018.  Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities. Plant and Soil. 427:191-208.
George TS, Giles CD, Menezes-Blackburn D, Condron LM, Gama-Rodrigues AC, Jaisi D, Lang F, Neal AL, Stutter MI, Almeida DS et al..  2018.  Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities. Plant and Soil. 427:191-208.
Gontikaki E, Thornton B, Cornulier T, Witte U.  2015.  Occurrence of priming in the degradation of lignocellulose in marine sediments. PLoS ONE. 10:e0143917.
Graham NS, Broadley MR, Hammond JP, White PJ, May ST.  2007.  Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection. BMC Genomics. 8:-344. Abstract
Grant OM, Chaves MM, Jones HG.  2006.  Optimising thermal imaging as a technique for detecting stomatal closure induced by drought stress under greenhouse conditions. Physiologia Plantarum. 127:507-518. Abstract
Grimm V, Berger U, DeAngelis DL, Polhill JG, Giske J, Railsback SF.  2010.  The ODD protocol for describing individual-based and agent-based models: A first update. Ecological Modelling. 221(23):2760-2768.
Grimm V, Railsback SF, Vincenot C, Berger U, Gallagher C, DeAngelis DL, Edmonds B, Ge J, Giske J, Groeneveld J et al..  2020.  The ODD protocol for describing agent-based and other simulation models: a second update to improve clarity, replication, and structural realism. Journal of Artificial Societies and Social Simulation. 23:ArticleNo.7.
Guilioni L, Jones HG, Leinonen I, Lhomme JP.  2008.  On the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology. 148:1908-1912.
H
Hemsley PA.  2017.  An outlook on protein S-acylation in plants: what are the next steps? Journal of Experimental Botany. 68:3155-3164.
Hillier S, Marwa E, Rice C.  2013.  On the mechanism of exfoliation of "Vermiculite". Clay Minerals. 48:563-582.
Holland J, Brown JL, MacKenzie K, Neilson R, Piras S, McKenzie BM.  2021.  Over winter cover crops provide yield benefits for spring barley and maintain soil health in northern Europe. European Journal of Agronomy. 130:ArticleNo.126363.
Holmes A, Birse L, Jackson RW, Holden NJ.  2014.  An optimised method for the extraction of bacterial mRNA from plant roots infected with Escherichia coli O157:H7. Frontiers in Microbiology Research. 5
Hurd CL, Beardall J, Comeau S, Cornwall CE, Havenhand JN, Munday PL, Parker LM, Raven JA, McGraw CM.  2020.  Ocean acidification as a multiple driver: how interactions between changing seawater carbonate parameters affect marine life. Marine and Freshwater Research. 781:263-274.
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Kiiker R, Hansen M, Williams IH, Cooke DEL, Runno-Paurson E.  2018.  Outcome of sexual reproduction in the Phytophthora infestans population in Estonian potato fields. European Journal of Plant Pathology. 152:395-407.
L
Lamour KH, Stam R, Jupe J, Huitema E.  2012.  The oomycete broad-host-range pathogen Phytophthora capsici. Molecular Plant Pathology. 13:329-337.
Larson BMH, van der Wal R, Fischer A, Selge S.  2017.  Origin might matter; people matter, too. A response to the comment by Rejmanek and Simberloff, 2016. Environmental Conservation. 44:100-101.
Leles SG, Mitra A, Flynn KJ, Stoecker DK, Hansen PJ, Calbet A, McManus GB, Sanders RW, Caron DA, Not F et al..  2017.  Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance. Proceedings of the Royal Society B, Biological Sciences. 284:ArticleNo.1860.
Losvik A, Beste L, Stephens J, Jonsson L.  2018.  Overexpression of the aphid-induced serine protease inhibitor CI2c gene in barley affects the generalist green peach aphid, not the specialist bird cherry-oat aphid. PLoS ONE. 13:ArticleNo.e0193816.
Lowassa A, Tadie D, Fischer A.  2012.  On the role of women in bushmeat hunting - insights from Tanzania and Ethiopia. Journal of Rural Studies. 28:622-630.
M
Manfreda S, McCabe ME, Miller PE, Lucas R, Madrigal VP, Mallinis G, Dor E, Helman D, Estes L, Ciraolo G et al..  2018.  On the use of unmanned aerial systems for environmental monitoring. Remote Sensing. 10:ArticleNo.641.
Manfreda S, McCabe ME, Miller PE, Lucas R, Madrigal VP, Mallinis G, Dor E, Helman D, Estes L, Ciraolo G et al..  2018.  On the use of unmanned aerial systems for environmental monitoring. Remote Sensing. 10:ArticleNo.641.
Matthews KB, Renner A, Blackstock KL, Waylen KA, Miller DG, Wardell-Johnson DH, Juarez-Bourke A, Cadillo-Benalcazar J, Schyns JF, Giampietro M.  2021.  Old wine in new bottles: exploiting data from the EU’s Farm Accountancy Data Network for Pan-EU sustainability assessments of agricultural production systems. Sustainability. 13:ArticleNo.10080.
McNeilly TN, Mitchell MC, Corbishley A, Nath M, Simmonds H, McAteer SP, Mahajan A, Low JC, Smith DGE, Huntley JF et al..  2015.  Optimizing the protection of cattle against Escherichia coli O157:H7 colonization through immunization with different combinations of H7 Flagellin, Tir, Intimin-531 or EspA. PLoS ONE. 10:e0128391.
McVittie A, Norton L, Martin-Ortega J, Siameti I, Glenk K, Aalders IH.  2015.  Operationalizing an ecosystem services-based approach using Bayesian Belief Networks: An application to a riparian buffer zone. Ecological Economics. 110:15-27.
Mei Y, Thorpe P, Guzha A, Haegeman A, Blok VC, MacKenzie K, Gheysen G, Jones JT, Mantelin S.  2015.  Only a small subset of the SPRY domain gene family in Globodera pallida is likely to encode effectors, two of which suppress host defences induced by the potato resistance gene Gpa2. Nematology. 17:409-424.
Menezes-Blackburn D, Giles C, Darch T, George TS, Blackwell M, Stutter MI, Shand CA, Lumsdon D, Cooper P, Wendler R et al..  2018.  Opportunities for mobilizing recalcitrant phosphorus from agricultural soils: a review. Plant and Soil. 427:5-16.
Michael G, Bahri-Esfahani J, Li QW, Rhee YJ, Wei Z, Fomina M, Liang XJ.  2014.  Oxalate production by fungi: significance in geomycology, biodeterioration and bioremediation. Fungal Biology Reviews. 28:36-55.
Mitchell RJ, Keith AM, Potts JM, Ross J, Reid E, Dawson LA.  2012.  Overstory and understory vegetation interact to alter soil community composition and activity. Plant and Soil. 352:65-84.
Morris WL, Ducreux LJM, Hedden P, Millam S, Taylor MA.  2006.  Overexpression of a bacterial 1-deoxy-D-xylulose 5-phosphate synthase gene in potato tubers perturbs the isoprenoid metabolic network: implications for the control of the tuber life-cycle. Journal of Experimental Botany. 57:3007-3018. Abstract
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Negri C, Chiaradia E, Rienzner M, Mayer A, Gandolfi C, Romani M, Facchi A.  2020.  On the effects of winter flooding on the hydrological balance of rice areas in northern Italy. Journal of Hydrology. 590:ArticleNo.125401..
Nijnik M, Slee B, Pajot G.  2011.  Opportunities and challenges for terrestrial carbon offsetting and marketing, with some implications for forestry in the UK. South and East European Journal of Forestry (SEEFOR). 1:69-79.
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Orskov ER, Anchang KY, Subedi M, Smith J.  2014.  Overview of holistic application of biogas for small scale farmers in Sub-Saharan Africa. Biomass and Bioenergy. 70:4-16.
Ovando P, Speich M.  2020.  Optimal harvesting decision paths when timber and water have an economic value in uneven forests. Forests. 11:ArticleNo.903.
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Polhill JG, Gotts NM.  2009.  Ontologies for transparent integrated human-natural system modelling. Landscape Ecology. 24(9):1255-1267.
Polhill JG.  2010.  ODD updated. Journal of Artificial Societies and Social Simulation.. 13(4):9.
Polhill JG, Edmonds B.  2007.  Open access for social simulation. Journal of Artificial Societies and Social Simulation. 10(3):10.
Potts T, O'Higgins T, Hastings E.  2012.  Oceans of opportunity or stormy seas? What does the future hold for developments in European marine policy Philosophical Transactions of the Royal Society of London, A.. 370:5682-5700.
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Qian MR, Wu HZ, Wang JM, Zhang H, Zhang ZL, Zhang YZ, Lin H, Ma JW.  2016.  Occurrence of trace elements and antibiotics in manure- based fertilizers from the Zhejiang Province of China. Science of the Total Environment. 559:174-181.
Qian B, Gregorich EG, Gameda S, Hopkins DW, Wang XL.  2011.  Observed soil temperature trends associated with climate change in Canada. Journal of Geophysical Research. 116:16pp.
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Rajala A, Peltonen-Sainio P, Jalli M, Jauhiainen L, Hannukkala A, Tenhola-Roininen T, Ramsay L, Manninen O.  2017.  One century of Nordic barley breeding: nitrogen use efficiency, agronomic traits and genetic diversity. Journal of Agricultural Science. 155:582-598.
Raven J.  2020.  Origin of the roles of potassium in biology. Bioessays. :ArticleNo.e20000302.
Regnier T, Augley J, Devalla S, Robinson CD, Wright P, J, Wright F.  2017.  Otolith chemistry reveals seamount fidelity in a deepwater fish. Deep-Sea Research, Part I. 121:183-189.
Richardon A, George T, Hens M, Delhaize E, Ryan P, Simpon R, Hocking P.  2022.  Organic anions facilitate the mobilization of soil organic phosphorus and enhances its subsequent lability to phosphatases. Plant and Soil.
Richards M, McDonald AJS, Aitkenhead MJ.  2008.  Optimisation of competition indices using simulated annealing and artificial neural networks. Ecological Modelling. 214(2-4):375-384.
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Schimmelrnann A, Qi HP, Coplen TB, Brand WA, Fong J, Meier-Augenstein W, Kemp HF, Toman B, Ackermann A, Assonov S et al..  2016.  Organic reference materials for hydrogen, carbon, and nitrogen stable isotope-ratio measurements: caffeines, n-alkanes, fatty acid methyl esters, glycines, L-valines, polyethylenes, and oils. Analytical Chemistry. 88:4294-4302.
Senn J, Mills J, L. Walsh C, Addy S, Peppa M.  2022.  Onsite geometric calibration of RPAS mounted sensors for SfM photogrammetric geomorphological surveys. Earth Surface Processes and Landforms..
Singh K, Aitkenhead MJ, Fidelis C, Yinil D, Sanderson T, Snoeck D, Field DJ.  2021.  Optimization of spectral pre-processing for estimating soil conditions on small farms. Soil Use and Management.
Singh BK.  2009.  Organophosphorus degrading bacteria: ecology and industrial applications. Nature Review Microbiology. 7(2):156-164.
Sjogersten S, Caul S, Daniell TJ, Jurd APS, O'Sullivan OS, Stapleton CS, Titman JJ.  2016.  Organic matter chemistry controls greenhouse gas emissions from permafrost peatlands. Soil Biology and Biochemistry. 98:42-53.
Smith SW, Vandenberghe C, Johnson D, Pakeman RJ, van der Wal R, Woodin SJ.  2013.  Optimising carbon storage within a spatially heterogeneous upland grassland through sheep grazing management. Ecosystems. 17:418-429.
Smith RI, Barton DN, Dick J, Haines-Young R, Madsen AL, Rusch GM, Termansen M, Woods H, Carvalho L, Giuca RC et al..  2017.  Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
Smith RI, Barton DN, Dick J, Haines-Young R, Madsen AL, Rusch GM, Termansen M, Woods H, Carvalho L, Giuca RC et al..  2018.  Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
Stark LA, Taliansky ME.  2008.  Old and new faces of the nucleolus. Workshop on the nucleolus and disease. EMBO Reports. 10:35-40. Abstract
Sutherland LA, Darnhofer I.  2012.  Of organic farmers and "good farmers": changing habitus in rural England. Journal of Rural Studies. 28:232-240.
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Thonur L, Maley M, Gilray J, Crook T, Laming E, Turnbull D, Nath M, Willoughby K.  2012.  One-step multiplex real time RT-PCR for the detection of bovine respiratory syncytial virus, bovine herpesvirus 1 and bovine parainfluenza virus 3. BMC Veterinary Research. 8:37-37.
Toorop PE, Herrera Ballester M, Deng W, Iannetta PPM.  2011.  Osmotic stress tolerance of Capsella bursa-pastoris seeds contributes to bet-hedging in arable fields. Association of Applied Biologists - Agricultural Ecology Research: It's Role in Delivering Sustainable Farm Systems, Dundee, 15-16 June 2011. Aspects of Applied Biology. 109:39-40.
Torrance L, Ziegler A, Pittman H, Paterson M, Toth R, Eggleston I.  2006.  Oriented immobilisation of engineered single-chain antibodies to develop biosensors for virus detection. Journal of Virological Methods. 134:164-170. Abstract
Torres GA, Gong Z, Iovene M, Hirsch C, Buell CR, Bryan GJ, Novak P, Macas J, Jiang J.  2011.  Organization and evolution of subtelomeric satellite repeats in the potato genome. Genes Genomes Genetics. 1:85-92.
Tzortzakakis EA, Adam MAM, Blok VC, Paraskevopoulos C, Bourtzis K.  2005.  Occurrence of resistance-breaking populations of root-knot nematodes on tomato in Greece. European Journal of Plant Pathology. 113:101-105. Abstract
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Veneklaas EJ, Lambers H, Bragg J, Finnegan PM, Lovelock CE, Plaxton WC, Price C, Scheible W, Shane MW, White PJ et al..  2012.  Opportunities for improving phosphorus-use efficiency in crop plants. New Phytologist. 195:306-320.
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Wang HX, He H, Qi YT, McLellan H, Tian ZJ, Birch PRJ, Tian ZD.  2019.  The oomycete microbe-associated molecular pattern Pep-13 triggers SERK3/BAK1-independent plant community. Plant Cell Reports. 38:173-182.
Were HK, Kabira JN, Kinyua ZM, Olubayo FM, Karinga JK, Aura J, Lees AK, Cowan GH, Torrance L.  2013.  Occurrence and distribution of potato pests and diseases in the major potato growing areas in Kenya. Potato Research. 56:325-342.
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Yan X, De Clercq P, Han R, Jones JT, Chen S, Moens M.  2011.  Osmotic responses of different strains of Steinernema carpocapsae. Nematology. 13:845-851.
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Zhang Z, Rhind SM.  2011.  Optimized determination of polybrominated diphenyl ethers and polychlorinated biphenyls in sheep serum by solid-phase extraction-gas chromatography mass spectrometry. Talanta. 84:487-493.
Zuber T, Holm D, Byrne P, Ducreux L, Taylor M, Kaiser M, Stushnoff C.  2015.  Optimization of in vitro inhibition of HT-29 colon cancer cell cultures by Solanum tuberosum L. extracts. Food and Function. 6:72-83.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.