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2005
Liu Z, Bos JIB, Armstrong MR, Whisson SC, da Cunha L, Torto-Alalibo T, Win J, Avrova AO, Wright F, Birch PRJ et al..  2005.  Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Molecular Biology and Evolution. 22:659-672. Abstract
Ramsay G, Griffiths DW, Deighton N.  2005.  Patterns of solanidine glycoalkaloid variation in four gene pools of the cultivated potato. Genetic Resources and Crop Evolution. 51:805-813. Abstract
Raven JA, Finkel ZV, Irwin AJ.  2005.  Picophytoplankton: bottom-up and top-down controls on ecology and evolution. Vie et Milieu - Life and Environment. 55:209-215. Abstract
Saari SK, Campbell CD, Russell JR, Alexander IJ, Anderson IC.  2005.  Pine microsatellite markers allow roots and ectomycorrhizas to be linked to individual trees. New Phytologist. 165:295-304. Abstract
Millam S, Obert B, Pret'ov A.  2005.  Plant cell and biotechnology studies in Linum usitatissimum - a review. Plant Cell, Tissue and Organ Culture. 82:93-103. Abstract
Moln A, Csorba T, Lakatos L, V, Lacomme C, Burgy J.  2005.  Plant virus-derived small interfering RNAs originate predominantly from highly structured single-stranded viral RNAs. Journal of Virology. 79:7812-7818. Abstract
Sprent JI.  2005.  Preface. Water, Air and Soil Pollution: Focus. 4:1-2. Abstract
Jones AT, Cowan GH, McGavin WJ, Roberts IM, Torrance L.  2005.  Production and properties of monoclonal antibodies to Solanum nodiflorum mottle sobemovirus. Annals of Applied Biology. 146:321-325. Abstract
Pendle AF, Clark GP, Boon R, Lewandowska D, Lam YW, Andersen J, Mann M, Lamond AI, Brown JWS, Shaw PJ.  2005.  Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. Molecular Biology of the Cell. 16:260-269.
2006
Urama KC, Hodge ID.  2006.  Participatory environmental education and WTP for river basin management: empirical evidence from Nigeria. Land Economics. 82(4):542-561.
Matthews RB.  2006.  The People and Landscape Model (PALM): An agent-based spatial model of livelihood generation and resource flows in rural households and their environment. Ecological Modelling. 194(4):329-343.
Goddard PJ, Waterhouse A, Dwyer CM, Stott A.  2006.  The perception of the welfare of sheep in extensive systems. Small Ruminant Research. 62(3):215-225.
McLean S, Duncan AJ.  2006.  Pharmacological perspectives on the detoxification of plant secondary metabolites: implications for ingestive behaviour of herbivores. Journal of Chemical Ecology. 32(6):1213-1228.
Brooker RW.  2006.  Plant-plant interactions and environmental change. New Phytologist. 171:273-275.
Mather A, Hill G, Nijnik M.  2006.  Post-productivism and rural land use: cul de sac or challenge for theorization? Journal of Rural Studies. 22(4):441-455.
Artz RRE, Avery LM, Jones DL, Davey L, Killham K.  2006.  Potential pitfalls in the quantitative molecular detection of escherichia coli O157:H7 in environmental matrices. Canadian Journal of Microbiology. 52(5):482-488.
Robertson E, Gordon IJ, Perez-Barberia FJ.  2006.  Preferences of sheep and goats for straw pellets treated with different food-flavouring agents. Small Ruminant Research. 63(1-2):50-57.
Kamari J, Boorman D, Icke J, Perrin C, Candela L, Elorza FJ, Ferrier RC, Bakken TH, Hutchins M.  2006.  Process for benchmarking models: dialogue between water managers and modellers. Archiv fur Hydrologie, Large Rivers Supplement. 17(1-2):3-21.
Dove H, Mayes RW.  2006.  Protocol for the analysis of n-alkanes and other plant-wax compounds and for their use as markers for quantifying the nutrient supply of large mammalian herbivores. Nature Protocols. 1(4):1680-1697.
Abang M, Baum M, Ceccarelli S, Grando S, Linde CC, Yahyaoui AH, Zhan J, McDonald BA.  2006.  Pathogen evolution in response to host resistance genes: Evidence from field experiments with Rhynchosporium secalis on barley. Phytopathology. 96:S2-S2.
Collazo C, Ramos PL, Chacon O, Borroto CJ, Lopez Y, Pujol M, Thomma BPHJ, Hein I, Borras-Hidalgo O.  2006.  Phenotypical and molecular characterization of Tomato mottle Taino virus - Nicotiana megalosiphon interaction. Physiological and Molecular Plant Pathology. 67:231-236. Abstract
Dick MA, Dobbie K, Cooke DEL, Brasier CM.  2006.  Phytophthora captiosa sp. nov and Phytophthora fallax sp. nov causing crown dieback of Eucalyptus in New Zealand. Mycological Research. 110:393-404. Abstract
Donahoo R, Blomquist CL, Thomas SL, Moulton JK, Cooke DEL, Lamour KH.  2006.  Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycological Research. 110:1309-1322. Abstract
Ravensdale M, Toth IK, Birch PRJ.  2006.  Phytotoxins and suppression of resistance: New mechanisms of disease induction in the plant pathogen Erwinia carotovora subsp. atroseptica. Phytopathology. 96:S96-S96.
McCue KF, Allen PV, Shepherd LVT, Blake A, Whitworth JL, Maccree MM, Rockhold DR, Stewart D, Davies HV, Belknap WR.  2006.  The primary in vivo steroidal alkaloid glucosyltransferase from potato. Phytochemistry. 67:1590-1597. Abstract
Cooke DEL.  2006.  The pros and cons of ITS-based phylogenetic analysis for the genus Phytophthora: current status and future vision. Phytopathology. 96:S134-S134.
Lehesranta SJ, Davies HV, Shepherd LVT, Koistinen KM, Massat N, Nunan N, McNicol JW, K SO.  2006.  Proteomic analysis of the potato tuber life cycle. Proteomics. 6:6042-6052. Abstract
Jones AT, McGavin WJ, Gepp V, Zimmerman MT, Scott SW.  2006.  Purification and properties of blackberry chlorotic ringspot, a new virus species in subgroup 1 of the genus Ilarvirus found naturally infecting blackberry in the UK. Annals of Applied Biology. 149:125-135. Abstract
2007
Irvine RJ.  2007.  Parasites and the dynamics of wild mammal populations. Animal Science. 82(6):775-781.
Patela M, Kok K, Rothman D.  2007.  Participatory scenario construction in land use analysis: An insight into the experiences created by stakeholder involvement in the Northern Mediterranean. Land Use Policy. 24(3):546-561.
Scalenghe EERAC, Barberis E.  2007.  Phosphorus loss in overfertilized soils: The selective P partitioning and redistribution between particle size separates. European Journal of Agronomy. 27(1):72-80.
Stutter MI, Lumsdon DG, Thoss V.  2007.  Physico-chemical and biological controls on dissolved organic matter in peat aggregate soil columns. European Journal of Soil Science. 58:646-657.
Scott AJ, Shannon PH.  2007.  Planning for rural development in Scotland: A new role for local landscape designations? Planning Theory and Practice. 8:509-528.
Hooker JE, Piatti P, Cheshire MV, Watson CA.  2007.  Polysaccharides and monosaccharides in the hyphosphere of the arbuscular mycorrhizal fungi Glomus E3 and Glomus tenue. Soil Biology and Biochemistry. 39(2):680-683.
Simonsson M, Andersson S, Andrist-Rangel Y, Hillier S, Mattsson L, Oborn I.  2007.  Potassium release and fixation as a function of fertilizer application rate and soil parent material. Geoderma. 140(1-2):188-198.
Tolkamp BJ, Yearsley JM, Gordon IJ, Illius AW, Speakman JR, Kyriazakis I.  2007.  Predicting the effects of body fatness on food intake and performance of sheep. British Journal of Nutrition. 97(6):1206-1215.
Thornton B, Osborne SM, Paterson E, Cash P.  2007.  A proteomic and targeted metabolomic approach to investigate change in Lolium perenne roots when challenged with glycine. Journal of Experimental Botany. 58(7):1581-1590.
Stamati K, Hollingsworth PM, Russell JR.  2007.  Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
Judge J, Davidson RS, Marion G, White PCL, Hutchings MR.  2007.  Persistence of Mycobacterium avium subspecies paratuberculosis in rabbits: the interplay between horizontal and vertical transmission. Journal of Applied Ecology. 44:302-311. Abstract
Gregory AS, Watts CW, Whalley WR, Kuan HL, Griffiths BS, Hallett PD, Whitmore AP.  2007.  Physical resilience of soil to field compaction and the interactions with plant growth and microbial community structure. European Journal of Soil Science. 58:1221-1232. Abstract
Giordano M, Norici A, Gilmour DJ, Raven JA.  2007.  Physiological responses of the green alga Dunaliella parva (Volvocales, Chlorophyta) to controlled incremental changes in the N source. Functional Plant Biology. 34:925-934. Abstract
Kaplan IB, Lee L, Ripoll DR, Palukaitis P, Gildow FE, Gray SM.  2007.  Point mutations in the potato leafroll virus major capsid protein alter virion stability and aphid transmission. Journal of General Virology. 88:1821-1830. Abstract
Carfrae JA, Sheppard LJ, Raven JA, Leith ID, Crossley A.  2007.  Potassium and phosphorus additions modify the response of Sphagnum capillifolium growing on a Scottish ombrotrophic bog to enhanced nitrogen deposition. Applied Geochemistry. 22:1111-1121. Abstract
McCue KF, Allen PV, Shepherd LVT, Blake A, Maccree MM, Rockhold DR, Novy RG, Stewart D, Davies HV, Belknap WR.  2007.  Potato glycosterol rhamnosyltransferase, the terminal step in triose side-chain biosynthesis. Phytochemistry. 68:327-334. Abstract
Shepherd T, Dobson G, Verrall SR, Conner S, Griffiths DW, McNicol JW, Davies HV, Stewart D.  2007.  Potato metabolomics by GC-MS: what are the limiting factors? Metabolomics. 3:475-488. Abstract
Christie WW, Dobson G, Adlof RO.  2007.  A practical guide to the isolation, analysis and identification of conjugated linoleic acid. Lipids. 42:1073-1084. Abstract
Chope GA, Terry LA, White PJ.  2007.  Preharvest application of exogenous abscisic acid (ABA) or an ABA analogue does not affect endogenous ABA concentration of onion bulbs. Plant Growth Regulation. 52:117-129. Abstract
Laurenson K, McKendrick IJ, Reid HW, Challenor R, Mathewson GK.  2007.  Prevalence, spatial distribution and the effect of control measures on louping-ill virus in the Forest of Bowland, Lancashire. Epidemiology and Infection. 135:963-973. Abstract
Szili-Kovacs T, Torok K, Tilston EL, Hopkins DW.  2007.  Promoting microbial immobilization of soil nitrogen during restoration of abandoned agricultural fields by organic additions. Biology and Fertility of Soils. 43:823-828.
Zahra R, Blackwood JK, Sales J, Leach DRF.  2007.  Proofreading and secondary structure processing determine the orientation dependence of CAG CTG trinucleotide repeat instability in Escherichia coli. Genetics. 176:27-41. Abstract
Hughes V, Smith S, Garcia-Sanchez A, Sales J, Stevenson K.  2007.  Proteomic comparison of Mycobacterium avium subspecies paratuberculosis grown in vitro and isolated from clinical cases of ovine paratuberculosis. Microbiology. 153:196-206. Abstract
2008
Vagiri M, Conner S, Stewart D, Andersson SC, Verrall S, Johansson E, Rumpunen K.  2008.  Phenolic compounds in blackcurrant (Ribes nigrum L.) leaves relative to leaf position and harvest date. Food Chemistry. 172:135-142.
Leckie FM, Arroyo B, Redpath SM, Thirgood SJ.  2008.  Parental differences in brood provisioning by Hen Harriers Circus cyaneus. Bird Study. 55(2):209-215.
Millard P, Midwood AJ, Hunt JE, Whitehead D, Boutton T.  2008.  Partitioning soil surface CO2 efflux into autotrophic and heterotrophic components, using natural gradients in soil &13C in an undisturbed savannah soil. Soil Biology and Biochemistry. 40(7):1575-1582.
van der Linde S, Alexander IJ, Anderson IC.  2008.  A PCR-based method for detecting the mycelia of stipitate hydnoid fungi in soil. Journal of Microbiological Methods. 75(1):40-46.
Day-Stirrat RJ, Loucks RG, Milliken KL, Hillier S, van der Pluijm BA.  2008.  Phyllosilicate orientation demonstrates early timing of compactional stabilization in calcite-cemented concretions in the Barnett Shale (Late Mississippian), Fort Worth Basin, Texas (U.S.A). Sedimentary Geology. 208(1-2):27-35.
Beugelsdijk DCM, van der Linde S, Zuccarello GC, den Bakker HC, Draisma SGA, Noordeloos ME.  2008.  A phylogenetic study of Boletus section Boletus in Europe. Persoonia. 20:1-7.
Chaudri A, McGrath S, Gibbs P, Chambers B, Carlton-Smith C, Bacon J, Campbell CD, Aitken M.  2008.  Population size of indigenous Rhizobium leguminosarum biovar trifolii in long-term field experiments with sewage sludge cake, metal-amended liquid sludge or metal salts: Effects of zinc, copper and cadmium. Soil Biology and Biochemistry. 40(7):1670-1680.
Pakeman RJ, Reid CL, Lennon JJ, Kent M.  2008.  Possible interactions between environmental factors in determining species optima. Journal of Vegetation Science. 19:201-208.
Sutherland LA.  2008.  Post-Soviet agricultural employment: A case study of employee incentives in Krasnodar Territory, Russia. Journal of Peasant Studies. 35(3):369-389.
Hetherington DA, Miller DR, Macleod CD, Gorman ML.  2008.  A potential habitat network for the Eurasian lynx Lynx lynx in Scotland. Mammal Review. 38(3):285-303.
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2008.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25(1):66-77.
Aitkenhead MJ, Aalders IH.  2008.  Predicting land cover using GIS, Bayesian and evolutionary algorithm methods. Journal of Environmental Management.. 90:236-250.
Kleeberg R, Monecke T, Hillier S.  2008.  Preferred orientation of mineral grains in sample mounts for quantitative XRD measurements: How random are powder samples? Clays and Clay Minerals. 56(4):404-415.
Lilly A, Nemes A, Rawls WJ, Pachepsky YA.  2008.  Probabilistic approach to the identification of input variables to estimate hydraulic conductivity. Soil Science Society of America Journal. 72(1):16-24.
Rouchier J, Cioffi-Revilla C, Polhill JG, Takadama K.  2008.  Progress in model-to-model analysis. Journal of Artificial Societies and Social Simulation. 11(2):8.
Nijnik M, Zahvoyska L, Nijnik, M.; Mather A, Ode A.  2008.  Public evaluation of landscape content and change: Several examples from Europe. Land Use Policy. 26:77-86.
Blok VC, Jones JT, Phillips MS, Trudgill DL.  2008.  Parasitism genes and host range disparities in biotrophic nematodes: the conundrum of polyphagy versus specialism. Bioessays. 30:249-259. Abstract
Yahiaoui S, Igartua E, Moralejo M, Ramsay L, Molina-Cano J-L, Ciudad FJ, Lasa JM, Gracia MP, Casas AM.  2008.  Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
Wang J, Zhang X, Bengough AG, Crawford JW.  2008.  Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation. International Journal of Numerical Methods for Heat & Fluid Flow. 18:656-672. Abstract
Chapman SN, Faulkner C, Kaiserli E, Garcia-Mata C, Savenkov EI, Roberts AG, Oparka KJ, Christie JM.  2008.  The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection. Proceedings of the National Academy of Sciences, USA. 105:20038-20043. Abstract
K SF, Raven JA.  2008.  Photosynthetic oscillation in individual cells of the marine diatom Coscinodiscus wailesii (Bacillariophyceae) revealed by microsensor measurements. Photosynthesis Research. 95:37-44. Abstract
Dobson G, Shepherd T, Verrall SR, Conner S, McNicol JW, Ramsay G, Shepherd LVT, Davies HV, Stewart D.  2008.  Phytochemical diversity in tubers of potato cultivars and landraces using a GC-MS metabolomics approach. Journal of Agricultural and Food Chemistry. 56:10280-10291. Abstract
van Poppel PMJA, Guo J, van de Vondervoort PJI, Jung MWM, Birch PRJ, Whisson SC, Govers F.  2008.  The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector. Molecular Plant-Microbe Interactions. 21:1460-1470. Abstract
Mostowfizadeh-Ghalamfarsa R, Cooke DEL, Banihashemi Z.  2008.  Phytophthora parsiana sp. nov., a new high-temperature tolerant species. Mycological Research. 112:783-794. Abstract
Lambers H, Raven JA, Shaver GR, Smith SE.  2008.  Plant nutrient-acquisition strategies change with soil age. Trends in Ecology and Evolution. 23:94-103. Abstract
Palukaitis P, Carr JP.  2008.  Plant resistance responses to viruses. Journal of Plant Pathology. 90:153-171.
Harrison BD.  2008.  Plant virology in the 20th century. Phytopathology. 98, Supplement:S193-S194. Abstract
Canetta E, Kim S-H, Kalinina NO, Shaw J, Adya AK, Gillespie T, Brown JWS, Taliansky ME.  2008.  A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro. Journal of Molecular Biology. 376:932-937. Abstract
Grouffaud S, van West P, Avrova AO, Birch PRJ, Whisson SC.  2008.  Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans. Microbiology. 154:3743-3751. Abstract
Riepsamen AH, Blok VC, Phillips MS, Gibson T, Dowton M.  2008.  Poly(T) variation within mitochondrial protein-coding genes in Globodera (Nematoda : Heteroderidae). Journal of Molecular Evolution. 66:197-209. Abstract
2009
Eves-van den Akker S, Lilley CJ, Jones JT, Urwin PE.  2009.  Plant-parasitic nematode feeding tubes and plugs: new perspectives on function. Nematology. 17:1-9.
Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2009.  A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology and Biochemistry. 41(7):1450-1456.
Winward GP, Avery LM, Stephenson T, Jeffrey P, Le Corre KS, Fewtrell L, Jefferson B.  2009.  Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
Winward GP, Avery LM, Stephenson T, Jeffrey P, Le Corre KS, Fewtrell L, Jefferson B.  2009.  Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
Fraser MD, Davies DA, Vale JE, Nute GR, Hallett KG, Richardson RI, Wright IA.  2009.  Performance and meat quality of native and continental cross steers grazing ryegrass/white clover improved pasture or semi-natural rough grazing. Livestock Science. 123:70-82.
Zhou JL, Zhang ZL, Banks E, Grover D, Jiang JQ.  2009.  Pharmaceutical residues in wastewater treatment works effluents and their impact on receiving river water. Journal of Hazardous Materials.. 166(2-3):655-661.
Vo TKT, Orskov ER, Susmel P.  2009.  Physiological mechanism of low purine derivative excretion in urine of buffaloes compared with Bos taurus cattle. Animal Production Science. 49(11):994-997.
Macdonald CA, Thomas N, Robinson L, Tate KR, Ross DJ, Dando J, Singh BK.  2009.  Physiological, biochemical and molecular responses of soil microbial community after afforestation of pastures with Pinus radiata. Soil Biology and Biochemistry. 41(8):1642-1651.
Pettorelli N, Katzner T, Gordon IJ, Garner T, Mock K, Redpath S, Gompper M.  2009.  Possible consequences of the Copenhagen climate change meeting for conservation of animals. Animal Conservation. 12(6):503-504.
Pakeman RJ, Small JL.  2009.  Potential and realised contribution of endozoochory to seedling establishments. Basic and Applied Ecology. 10(7):656-661.
Hall CM, Rhind SM, Wilson MJ.  2009.  The potential for use of gastropod molluscs as bioindicators of endocrine disrupting compounds in the terrestrial environment. Journal of Environmental Monitoring. 11(3):491-497.
Urquhart J, Courtney P, Slee W.  2009.  Private ownership and public good provision in English woodlands. Small Scale Forestry, Published online. 9
Coleby AM, Aspinall PA, Miller RA.  2009.  Public attitudes and participation in wind turbine development. Journal of Environmental Assessment Policy and Management. 11(1):69-95.
Garnett MH, Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2009.  A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract
Comadran J, Thomas WTB, van Eeuwijk FA, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A, Benbelkacem A et al..  2009.  Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
Raven JA, Beardall J, Flynn KJ, Maberly SC.  2009.  Phagotrophy in the origins of photosynthesis in eukaryotes and as a complementary mode of nutrition in phototrophs: relation to Darwin's insectivorous plants. Journal of Experimental Botany. 60:3975-3987.
Richardson AE, Hocking PJ, Simpson RJ, George TS.  2009.  Plant mechanisms to optimise access to soil phosphorus. Crop and Pasture Science. 60:124-143.
Bradshaw JE.  2009.  Potato breeding at the Scottish Plant Breeding Station and the Scottish Crop Research Institute: 1920-2008 (Invited Review). Potato Research. 52:141-172.
Debeljak M, Kocev D, Towers W, Jones M, Griffiths BS, Hallett PD.  2009.  Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
Agu RC, Swanston JS, Walker JW, Pearson SY, Bringhurst TA, Brosnan JM, Jack FR.  2009.  Predicting alcohol yield from UK soft winter wheat for grain distilling: combined influence of hardness and nitrogen measurements. Journal of the Institute of Brewing. 115:183-190.
Granum E, Roberts K, Raven JA, Leegood RC.  2009.  Primary carbon and nitrogen metabolic gene expression in the diatom Thalassiosira pseudonana (Bacillariophyceae): Diel periodicity and effects of inorganic carbon and nitrogen. Journal of Phycology. 45:1083-1092.
Hein I, Birch PRJ, Danan S, Lefebvre V, Odeny DA, Gebhardt C, Trognitz F, Bryan GJ.  2009.  Progress in mapping and cloning qualitative and quantitative resistance against Phytophthora infestans in potato and its wild relatives. Potato Research. 52:215-227.
2010
Moore BD, Lawer IR, Wallis IR, Beale CM, Foley WJ.  2010.  Palatability mapping: a koala's eye view of spatial variation in habitat quality. Ecology. 91(11):3165-3176.
Msoffe F, Ogoto J, Bedelian C, Said M, Kifugo S, Reid R, Kaaya J, Neselle M, van Gardingen P, Thirgood SJ.  2010.  Participatory wildlife surveys in communal lands: a case study from Simanjiro, Tanzania. African Journal of Ecology. 8(3):727-735.
Andersen R, Rochefort L, Poulin M.  2010.  Peat, water and plant tissue chemistry monitoring: A seven-year case-study in a restored peatland. Wetlands. 30(1):159-170.
Michelena P, Jeanson R, Deneubourg JL, Sibbald AM.  2010.  Personality and collective decision-making in foraging herbivores. Proceedings of the Royal Society of London, B. 277(1684):1093-1099.
Senn HV, Swanson GM, Goodman SJ, Barton NH, Pemberton JM.  2010.  Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). Journal of Animal Ecology. 79(2):414-425.
Johnson D, Anderson IC, Williams A, Whitlock R, Grime J.  2010.  Plant genotypic diversity does not beget root-fungal species diversity. Plant and Soil. 336(1-2):107-111.
Zhang ZL, Shanmugam M, Rhind SM.  2010.  PLE and GC-MS determination of polybrominated diphenyl ethers in soils. Chromatographia. 72(7-8):535-543.
Newey SJ, Allison P, Thirgood SJ, Smith AA, Graham IM.  2010.  Population and individual level effects of over-winter supplementary feeding mountain hares. Journal of Zoology. 282(3):214-220.
Turner TL, Bourne EC, von Wettberg EJ, Hu T, Nuzhdin SV.  2010.  Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils. Nature Genetics. 42:260-U42.
Lind PM, Oberg D, Larsson S, Kyle CE, Orberg J, Rhind SM.  2010.  Pregnant ewes exposed to multiple endocrine disrupting pollutants through sewage sludge-fertilised pasture show an anti-estrogenic effect in their trabecular bone. The Science of the Total Environment. 408:2340-2346.
Helliwell RC, Simpson GL.  2010.  The present is the key to the past, but what does the future hold for the recovery of surface waters from acidification? Water Research. 44(10):3166-3180.
Beechie TJ, Sear DA, Olden JD, Pess GR, Buffington JM, Moir HJ, Roni P, Pollock MM.  2010.  Process-based principles for restoring river ecosystems. BioScience. 60(3):209-222.
Newton AC, Fitt BDL, Atkins SD, Walters DR, Daniell TJ.  2010.  Pathogenesis, parasitism and mutualism in the trophic space of microbe-plant interactions. Trends in Microbiology. 18:365-373.
Mostowfizadeh-Ghalamfarsa R, Panabi F, Banihashemi Z, Cooke DEL.  2010.  Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology. 114:325-339.
Duarte IM, De Almeida MTM, Brown DJF, Marques I, Neilson R, Decraemer W.  2010.  Phylogenetic relationships, based on SSU rDNA sequences, among the didelphic genera of the family Trichodoridae from Portugal. Nematology. 12:171-180.
Fleury D, Luo MC, Dvorak J, Ramsay L, Gill BS, Anderson OD, You FM, Schoaei Z, Deal KR, Langridge P.  2010.  Physical mapping of a large plant genome using global high-information-content-fingerprinting: the distal region of the wheat ancestor Aegilops tauschii chromosome 3DS. BMC Genomics. 11:-382.
Berry P, Spink J, Foulkes J, White PJ.  2010.  The physiological basis of genotypic differences in nitrogen use efficiency in oilseed rape (Brassica napus L.). Field Crops Research. 119:365-373.
Chichkova NV, Shaw J, Galiullina RA, Drury GE, Tuzhikov AI, Kim S-H, Kalkum M, Hong TB, Gorshkova EN, Torrance L et al..  2010.  Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity. EMBO Journal. 29:1149-1161.
Bos JIB, Armstrong MR, Gilroy EM, Boevink P, Hein I, Taylor RM, Tian ZD, Engelhardt S, Vetukuri RR, Harrower BE et al..  2010.  Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.
Finkel ZV, Beardall J, Flynn KJ, Quigg A, Rees TAV, Raven JA.  2010.  Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
Bengough AG, Hans J, Bransby MF, Valentine TA.  2010.  PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract
Rietman H, Champouret N, Hein I, Niks RE, Vleeshouwers VGAA.  2010.  Plant and oomycetes, an intimate relationship: co-evolutionary principles and impact on agricultural practice. CAB Review. 58:1-17.
Lambers H, Brundett MC, Raven JA, Hopper SD.  2010.  Plant mineral nutrition in ancient landscapes: high plant species diversity on infertile soils is linked to functional diversity for nutritional strategies. Plant and Soil. 334:11-31.
White PJ, Brown PH.  2010.  Plant nutrition for sustainable development and global health. Annals of Botany. 105:1073-1080.
Hinojosa MB, Carreira JA, Garc R, Rodr JM, Daniell TJ, Griffiths BS.  2010.  Plant treatment, pollutant load and soil type effects in the rhizosphere ecology of trace element polluted soils. Ecotoxicology and Environmental Safety. 73:970-981. Abstract
Kim S-H, Spensley M, Choi SK, Calixto CPG, Pendle AF, Koroleva O, Shaw PJ, Brown JWS.  2010.  Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli. Nucleic Acids Research. 38:3054-3067.
Lankau RA, Wheeler E, Bennett AE, Strauss SY.  2010.  Plant-soil feedbacks contribute to an intransitive competitive network that promotes both genetic and species diversity. Journal of Ecology. 99:176-185.
Loades KW, Bengough AG, Bransby MF, Hallett PD.  2010.  Planting density influence on fibrous root reinforcement of soils. Ecological Engineering. 36:276-284. Abstract
Holden N.  2010.  Plants as reservoirs for human enteric pathogens (Review). CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 5, 047:1-11.
Tilsner J, Cowan GH, Roberts AG, Chapman SN, Ziegler A, Savenkov EI, Torrance L.  2010.  Plasmodesmal targeting and intercellular movement of Potato mop-top pomovirus is mediated by a membrane anchored tyrosine-based motif on the lumenal side of the endoplasmic reticulum and the C-terminal transmembrane domain in the TGB3 movement protein. Virology. 402:41-51.
Andrews M, Hodge S, Raven JA.  2010.  Positive plant microbial interactions. Annals of Applied Biology. 157:317-320.
Brulisauer F, Lewis FI, Ganser AG, McKendrick IJ, Gunn GJ.  2010.  The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
Hotchkiss EJ, Dagleish MP, Willoughby K, McKendirck IJ, Finlayson J, Zadoks RN, Newsome E, Brulisauer F, Gunn GJ, Hodgson JC.  2010.  Prevalence of Pasteurella multocida and other respiratory pathogens in the nasal tract of Scottish calves. Veterinary Record. 167:555-560.
Gill CIR, McDougall GJ, Glidewell SM, Stewart D, Shen Q, Tuohy K, Dobbin A, Boyd A, Brown E, Haldar S et al..  2010.  Profiling of phenols in human faecal water after raspberry supplementation. Journal of Agricultural and Food Chemistry. 58:10389-10395.
Johnson SN, Petitjean S, Clark KE, Mitchell C.  2010.  Protected raspberry production accelerates onset of oviposition by vine weevils (Otiorhynchus sulcatus). Agricultural and Forest Entomology. 12:277-283.
Rotariu O, Smith-Palmer A, Cowden J, Bessell PR, Innocent GT, Reid SWJ, Matthews L, Dallas J, Ogden ID, Forbes KJ et al..  2010.  Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
2011
McGavin WJ, Cock PJA, MacFarlane SA.  2011.  Partial sequence and RT-PCR diagnostic test for the plant rhabdovirus Raspberry vein chlorosis virus. Plant Pathology. 60:462-467.
Hoolahan A, Blok VC, Gibson T, Dowton M.  2011.  Paternal leakage of Mitochondrial DNA in experimental crosses of populations of the potato cyst nematode Globodera pallida. Genetica. 139:1509-1519.
Comadran J, Ramsay L, MacKenzie K, Hayes P, Close TJ, Muehlbauer G, Stein N, Waugh R.  2011.  Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theoretical and Applied Genetics. 122:523-531.
Ross HA, Morris WL, Ducreux LJM, Hancock RD, Verrall SR, Morris JA, Tucker GA, Stewart D, Hedley PE, McDougall GJ et al..  2011.  Pectin engineering to modify product quality in potato. Plant Biotechnology Journal. 9:848-856.
Spezia L, Futter MN, Brewer MJ.  2011.  Periodic multivariate normal hidden Markov models for the analysis of water quality time series. Environmetrics. 22:304-317.
Smkal P, Kenicer G, Flavell AJ, Corander J, Kosterin O, Redden RJ, Ford R, Coyne CJ, Maxted M, Ambrose MJ et al..  2011.  Phylogeny, phylogeography and genetic diversity of the Pisum genus. Plant Genetic Resources. 9:4-18.
Peng X, Hallett PD, Zhang B, Horn R.  2011.  Physical response of rigid and non-rigid soils to analogues of biological exudates. European Journal of Soil Science. 62:676-684.
White PJ, Broadley MR.  2011.  Physiological limits to zinc biofortification of edible crops. Frontiers in Plant Science. 2:article80.
Bjorkman M, Klingen I, Birch ANE, Bones AM, Bruce T, Johansen T, Meadow R, Molmann J, Selijasen R, Smart L et al..  2011.  Phytochemicals of Brassicaceae in plant protection and human health - influences of climate, environment and agronomic practice. Phytochemistry. 72:538-556.
Vartapetian AB, Tuzhikov AI, Chichkova NV, Taliansky ME, Wolpert TJ.  2011.  A plant alternative to animal caspases: subtilisin-like proteases. Cell Death and Differentiation. 18:1289-1297.
Skiba MW, George TS, Baggs EM, Daniell TJ.  2011.  Plant influence on nitrification. Biochemical Society Transactions. 39:275-278.
Johnson SN, Staley JT, McLeod FAL, Hartley SE.  2011.  Plant-mediated effects of soil invertebrates and summer drought on above-ground multitrophic interactions. Journal of Ecology. 99:57-65.
Tilsner J, Amari K, Torrance L.  2011.  Plasmodesmata viewed as specialised membrane adhesion sites. Protoplasma. 248:39-60.
Veronico P, Melillo MT, Saponaro C, Leonetti P, Picardi E, Jones JT.  2011.  A polygalacturonase-inhibiting protein with a role in pea defence against the cyst nematode Heterodera goettingianna. Molecular Plant Pathology. 12:275-287.
Mattila PH, Hellstrom J, McDougall GJ, Dobson G, Pihlava JM, Tiirikka.T, Stewart D, Karjalainen RO.  2011.  Polyphenol and vitamin C content in European commercial blackcurrant juice products. Food Chemistry. 127:1216-1223.
Moloney PD, Hearne JW, Gordon IJ, McLeod S.  2011.  Portfolio optimisation techniques for a mixed-grazing scenario for Australia's rangelands. Natural Resource Modeling. 24:102-116.
Andrews M, Edwards GR, Ridgway HJ, Cameron KC, Di HJ, Raven JA.  2011.  Positive plant microbial interactions in perennial ryegrass dairy pasture systems. Annals of Applied Biology. 159:79-92.
Ross HA, Wright KM, McDougall GJ, Roberts AG, Chapman SN, Morris WL, Hancock RD, Stewart D, Tucker GA, James EK et al..  2011.  Potato tuber pectin structure is influenced by pectin methyl esterase activity and impacts on cooked potato texture. Journal of Experimental Botany. 62:371-381.
Elston DA, Nevison IM, Scott WA, Sier ARJ, Morecroft MD.  2011.  Power calculations for monitoring studies: a case study with alternative models for random variation. Environmetrics. 22:618-625.
Fox NJ, White PCL, McClean CJ, Marion G, Evans A, Hutchings MR.  2011.  Predicting impacts of climate change on Fasciola hepatica risk. PLoS ONE. 6:e16126.
Wojniusz S, Vogele C, Ropstad E, Evans N, Robinson J, Suetterlin S, Erhard HW, Solbakk AK, Endestad T, Oldberg DE et al..  2011.  Prepubertal gonadotropin-releasing hormone analog leads to exagerrated behavioral and emotional sex differences in sheep. Hormones and Behavior. 59:22-27.
DeGabriel JL, Albon SD, Fielding DA, Riach DJ, Westaway S, Irvine RJ.  2011.  The presence of sheep leads to increases in plant diversity and reductions in the impact of deer on heather. Journal of Applied Ecology. 48:1269-1277.
Gilroy EM, Breen S, Whisson SC, Squires J, Hein I, Kaczmarek M, Turnbull D, Boevink P, Lokossou A, Cano LM et al..  2011.  Presence/absence, differential expression and sequence polmorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants. New Phytologist. 191:763-776.
Evans J, Knight H, McKendrick IJ, Stevenson H, Barbudo AV, Gunn GJ, Low JC.  2011.  Prevalence of Escherichia coli O157: H7 and serogroups O26, O103, O111 and O145 in sheep presented for slaughter in Scotland. Journal of Medical Microbiology. 60:653-660.
Coyle DR, Clark KE, Raffa KF, Johnson SN.  2011.  Prior host feeding experience influences ovipositional but not feeding preference in a polyphagous insect herbivore. Entomologia Experimentalis et Applicata. 138:137-145.
Poggio L, Soille P.  2011.  A probabilistic approach to river network detection in digital elevation models. Catena. 87:341-350.
Gontikaki E, Mayor DJ, Thornton B, Black K, Witte U.  2011.  Processing of 13C-labelled diatoms by a bathyal community at sub-zero temperatures. Marine Ecology Progress Series. 421:39-50.
Selge S, Fischer A, van der Wal R.  2011.  Public and professional views on invasive non-native species - a qualitative social scientific investigation. Biological Conservation. 144:3089-3097.
Nijnik M, Miller DR, Nijnik, M.; Mather A, Fiorini S, Vogt N, Brondizio E, Morrice JG.  2011.  Public participation for planning the sustainable use of natural resources and landscape changes. International Journal of Interdisciplinary Social Sciences. 5:303-320.
Moles AT, Wallis IR, Foley WJ, Warton DI, Bisigato AJ, Clark CJ, Cohen PS, Cornwell WK, Edwards EWR, Gonzales-Ojeda T et al..  2011.  Putting plant defences on the map: a test of the idea that plants are better defended at lower latitudes. New Phytologist. 191:777-788.
Donnelly RE, Katzner T, Gordon IJ, Gompper ME, Redpath S, Garner TWJ, Altwegg R, Reed DH, Acevedo-Whitehouse K, Pettorelli N.  2011.  Putting the eco back in ecotourism. Animal Conservation. 14:325-327.
2012
Davies AL.  2012.  Palaeo-environments and human experience. Archaeological Dialogues. 19:51-54.
Marion G, McInerny GJ, Pagel J, Catterall S, Cook AR, Hartig F, O'Hara RB.  2012.  Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. Journal of Biogeography. 39:2225-2239.
Zhan J, Yang L, Zhu W, Newton AC.  2012.  Pathogen populations evolve to greater race complexity in agricultural systems - evidence from analysis of Rhynchosporium secalis virulence data. PLoS ONE. 7:e38611.
Chase-Topping ME, Rosser T, Allison LJ, Courcier, Evans J, McKendrick IJ, Pearce MC, Handel I, Caprioli A, Karch H et al..  2012.  Pathogenic potential to humans of bovine Escherichia coli O26, Scotland. Emerging Infectious Diseases. 18:439-448.
Zetsche E, Bulling MT, Witte U.  2012.  Permeability of intertidal sandflats: Impact of temporal variability on sediment metabolism. Continental Shelf Research. 42:41-50.
Brown EM, McDougall GJ, Stewart D, Pereira Caro G, Gonzalez-Barrio R, Allsopp P, Magee P, Crozier A, Rowland I, Gill CIR.  2012.  Persistence of anticancer activity in berry extracts after simulated gastrointestinal digestion and colonic fermentation. PLoS ONE. 7:e49740.
Greer E, Martin AC, Pendle A, Colas I, Jones AME, Moore G, Shaw P.  2012.  The Ph1 locus suppresses Cdk2-type activity during premeiosis and meiosis in wheat. The Plant Cell. 24:152-162.
Burthe S, Daunt F, Butler A, Elston DA, Frederiksen M, Johns D, Newell M, Thackeray SJ, Wanless S.  2012.  Phenological trends and trophic mismatch across multiple levels of a North Sea pelagic food web. International Journal of Plant Genomics. 454:119-133.
Roberts WM, Stutter MI, Haygarth PM.  2012.  Phosphorus retention and remobilization in vegetated buffer strips: a review. Journal of Environmental Quality. 41:389-399.
McIntosh FM, Maison N, Holtrop G, Young P, Stevens VJ, Ince J, Johnstone AM, Lobley GE, Flint HJ, Louis P.  2012.  Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ et al..  2012.  A physical, genetic and functional sequence assembly of the barley genome. Nature. 491:711-716.
Wallace JM, Horgan GW, Bhattacharya S.  2012.  Placental weight and efficiency in relation to maternal body mass index and the risk of pregnancy complications in women delivering singleton babies. Placenta. 33:611-618.
Chichkova NV, Tuzhikov AI, Taliansky ME, Vartapetian AB.  2012.  Plant phytaspases and animal caspases: structurally unrelated death proteases with a common role and specificity. Physiologia Plantarum. 145:77-84.
Kerchev P, Fenton B, Foyer CH, Hancock RD.  2012.  Plant responses to insect herbivory: interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways (Review). Plant Cell and Environment. 35:441-453.
Cowan GH, Roberts AG, Chapman SN, Ziegler A, Savenkov EI, Torrance L.  2012.  The potato mop-top virus TGB2 protein and viral RNA associate with chloroplasts and viral infection induces inclusions in the plastids. Frontiers in Plant Science. 3
Vinh NC, Oborn I, Ha PQ, Minh ND, Hough RL, Khai NM, Thuy LT.  2012.  Potential environment and public health risk due to contamination of heavy metals from industrial waste water in Lam Thao, Phu Tho, Vietnam. American Journal of Environmental Sciences. 8:71-78.
Hartley IP, Garnett MH, Sommerkorn M, Hopkins DW, Fletcher BJ, Sloan VL, Phoenix GK, Wookey PA.  2012.  A potential loss of carbon associated with greater plant growth in the European Arctic. Nature Climate Change. 2:875-879.
Merz U, Lees AK, Sullivan L, Schwarzel R, Hebeisen T, Kirk HG, Bouchek-Mechiche K, Hofferbert HR.  2012.  Powdery scab resistance in Solanum tuberosum: an assessment of cultivar x environment effect. Plant Pathology. 61:29-36.
Gao W, Ren T, Bengough AG, Auneau L, Watts CW, Whalley WR.  2012.  Predicting penetrometer resistance from the compression characteristic of soil. Soil Science Society of America Journal. 76:361-369.
Aitkenhead MJ, Coull MC, Towers W, Hudson G, Black HIJ.  2012.  Predicting soil chemical composition and other soil parameters from field observations using a neural network. Computers and Electronics in Agriculture. 82:108-116.
Nielsen UN, Osler GHR, Campbell CD, Burslem DFRP, van der Wal R.  2012.  Predictors of fine-scale spatial variation in soil mite and microbe community composition differ between biotic groups and habitats. Pedobiologia. 55:83-91.
Slee B.  2012.  Present opportunities for sustainable and multifunctional forest management for the development of rural areas. L’Italia Forestale e Montana. 67:147-160.
Avery LM, Booth P, Campbell CD, Tompkins D, Hough RL.  2012.  Prevalence and survival of potential pathogens in source segregated green waste compost. Science of the Total Environment. 431:128-138.
Humphry RW, Bruelisauer F, McKendrick IJ, Nettleton PF, Gunn GJ.  2012.  Prevalence of antibodies to bovine viral diarrhoea virus in bulk tank milk and associated risk factors in Scottish dairy herds. Veterinary Record. 171:445..
Urquhart J, Courtney P, Slee W.  2012.  Private woodland owners' perspectives on multifunctionality in English woodlands. Journal of Rural Studies. 28:95-106.
Wheelhouse NM, Sait M, Aitchison K, Livingstone M, Wright F, McLean K, Inglis NF, Smith DGE, Longbottom D.  2012.  Processing of chlamydia abortus polymorphic membrane protein 18D during the chlamydial developmental cycle. PLoS ONE. 7:e49190.
Arts K, Fischer A, van der Wal R.  2012.  The promise of wilderness between paradise and hell: a cultural-historical exploration of a Dutch National Park. Landscape Research. 37:239-256.
Johnson SN, Young MW, Karley AJ.  2012.  Protected raspberry production alters aphid-plant interactions but not aphid population size. Agricultural and Forest Entomology. 14:217-224.
Bragg JG, Quigg A, Raven JA, Wagner A.  2012.  Protein elemental sparing and codon usage bias are correlated among bacteria. Molecular Ecology. 21:2480-2487.
Lloyd LJ, Foster T, Rhodes P, Rhind SM, Gardner DS.  2012.  Protein energy malnutrition during early gestation in sheep blunts fetal renal vascular and nephron development and compromises adult renal function. Journal of Physiology. 590:377-393.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.