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2005
Quesada V, Dean C, Simpson GG.  2005.  Regulated RNA processing in the control of Arabidopsis flowering. International Journal of Developmental Biology. 49:773-780.
Beardall J, Roberts S, Raven JA.  2005.  Regulation of inorganic carbon acquisition by phosphorus limitation in the green alga Chorella emersonii. Canadian Journal of Botany - Review Canadienne de Botanique. 83:859-864. Abstract
Hall NM, Griffiths H, Corlett JA, Jones HG, Lynn J, King GJ.  2005.  Relationships between water-use traits and photosynthesis in Brassica oleracea resolved by quantitative genetic analysis. Plant Breeding. 124:557-564. Abstract
Hill P, Burford D, Martin DMA, Flavell AJ.  2005.  Retrotransposon populations of Vicia species with varying genome size. Molecular Genetics and Genomics. 273:371-381. Abstract
Hinsinger P, Gobran GR, Gregory PJ, Wenzel WW.  2005.  Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract
Cacciola SO, Chimento A, Pane A, Cooke DEL, Magnano di San Lio G.  2005.  Root and foot rot of Lantana caused by Phytophthora cryptogea. Plant Disease. 89:909-909. Abstract
Humphris SN, Bengough AG, Griffiths BS, Killham K, Rodger S, Stubbs V, Valentine TA, Young IM.  2005.  Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize. FEMS Microbiology Ecology. 54:123-130. Abstract
Toth IK, Birch PRJ.  2005.  Rotting softly and stealthily. Current Opinion in Plant Biology. 8:424-429.
Mylnikov SV, Kokko H, K SO, Oparina TI, Davies HV, Stewart D.  2005.  Rubus fruit juices affect lipid peroxidation in a Drosophila melanogaster model in vivo.. Journal of Agricultural and Food Chemistry. 53:7728-7733. Abstract
2006
Littlewood NA, Pakeman RJ, Woodin SJ.  2006.  The response of plant and insect assemblages to the loss of Calluna vulgaris from upland vegetation. Biological Conservation. 128(3):335-345.
Omotoso O, McCarty DK, Hillier S, Kleeberg R.  2006.  Results of the 3rd Reynolds Cup contest in quantitative mineral analysis. Clays and Clay Minerals. 54(6):748-760.
O'Reilly-Wapstra J, Iason GR, Thoss V.  2006.  The role of genetic and chemical variation of Pinus sylvestris seedlings in influencing slug herbivory. Oecologia. 152:82-91.
Courtney P, Hill GW, Roberts D.  2006.  The role of natural heritage in rural development: an analysis of economic linkages in Scotland. Journal of Rural Studies. 22(4):469-484.
Paterson E, Sim A, Standing D, Dorward M, McDonald AJS.  2006.  Root exudation from Hordeum vulgare in response to localised nitrate supply. Journal of Experimental Botany. 57(10):2413-2420.
Soulsby C, Tetzlaff D, Rodgers P, Dunn S, Waldron S.  2006.  Runoff processes, stream water residence times and controlling landscape characteristics in a mesoscale catchment: an initial evaluation. Journal of Hydrology. 325(1-4):197-221.
Holeva R, Phillips MS, Neilson R, Brown DJF, Young V, Boutsika K, Blok VC.  2006.  Real-time PCR detection and quantification of vector trichodorid nematodes and Tobacco rattle virus. Molecular and Cellular Probes. 20:203-211. Abstract
Rostoks N, Ramsay L, MacKenzie K, Cardle L, Bhat PR, Roose ML, Svensson JT, Stein N, Varshney RK, Marshall DF et al..  2006.  Recent history of artificial outcrossing facilitates whole-genome association mapping in elite inbred crop varieties. Proceedings of the National Academy of Sciences, USA. 103:18656-18661. Abstract
Lazarova SS, Malloch G, Oliveira CMG, Hubschen J, Neilson R.  2006.  Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations. Journal of Nematology. 38:404-410. Abstract
Andrews M, Raven JA, Lea PJ, Sprent JI.  2006.  A role for shoot protein in shoot-root dry matter allocation in higher plants. Annals of Botany. 97:3-10. Abstract
Bengough AG, Bransby MF, Hans J, McKenna SJ, Roberts TJ, Valentine TA.  2006.  Root responses to soil physical conditions; growth dynamics from field to cell. Journal of Experimental Botany. 57:437-447. Abstract
Gregory PJ.  2006.  Roots, rhizosphere and soil: the route to a better understanding of soil science? European Journal of Soil Science. 57:2-12. Abstract
2007
Walker KJ, Warman EA, Bhogal A, Cross RB, Pywell RF, Meek WR, Chambers BJ, Pakeman RJ.  2007.  Recreation of lowland heathland on ex-arable land: assessing the limiting processes on two sites with contrasting soil fertility and pH. Journal of Applied Ecology. 44(3):573-582.
Beale CM, Lennon JJ, Elston DA, Brewer MJ, Yearsley JM.  2007.  Red herrings remain in geographical ecology: a reply to Hawkins et al. (2007). Ecography. 30:845-847.
Kay D, Aitken M, Crowther J, Dickson I, Edwards AC, Francis C, Hopkins M, Jeffrey W, Kay C, McDonald MDATD et al..  2007.  Reducing fluxes of faecal indicator compliance parameters to bathing waters from diffuse agricultural sources: The Brighouse Bay study, Scotland. Environmental Pollution. 147(1):138-149.
Szubert J, Reiff C, Thorburn AP, Singh BK.  2007.  REMA: A computer-based mapping tool for analysis of restriction sites in multiple DNA sequences. Journal of Microbiological Methods. 69(2):411-413.
Gotts NM.  2007.  Resilience, panarchy and world-systems analysis. Ecology and Society. 12(1):24.
Le Duc MG, Pakeman RJ, Marrs RH.  2007.  A restoration experiment on moorland infested by Pterdium aquilinum: Plant species responses. Agriculture, Ecosystems and Environment. 119(1-2):53-59.
Pedersen ML, Friberg N, Skriver J, Baattrup-Pedersen A, Larsen SE.  2007.  Restoration of Skjern River and its valley: short-term effects on river habitats, macrophytes and macroinvertebrates. Ecological Engineering. 30(2):145-156.
Paterson E, Gebbing T, Abel C, Sim A, Telfer G.  2007.  Rhizodeposition shapes rhizosphere microbial community structure in organic soil. New Phytologist. 173(3):600-610.
Stutter MI, Langan SJ, Demars BOL.  2007.  River sediments provide a link between catchment pressures and ecological status in a mixed land use Scottish river system. Water Research. 41(12):2803-2815.
Paquette SR, Behncke SM, O'Brien SH, Brenneman RA, Louis EE, Lapointe FJ.  2007.  Riverbeds demarcate distinct conservation units of the radiated tortoise (Geochelone radiata) in southern Madagascar. Conservation Genetics. 8(4):797-807.
Bastias BA, Anderson IC, Xu Z, Cairney WG.  2007.  RNA- and DNA-based profiling of soil fungal communities in a native Australian eucalypt forest and adjacent Pinus elliotti plantation. Soil Biology and Biochemistry. 39(12):3108-3114.
Helliwell RC, Coull MC, Evans CD, Davies JJL, Norris D, Ferrier RC, Jenkins A, Reynolds B.  2007.  The role of catchment characteristics in determining surface water nitrogen in four upland regions in the UK. Hydrology and Earth System Sciences. 11(1):356-371.
Gooding MJ, Gregory PJ, Ford KE, Ruske RE.  2007.  Recovery of nitrogen from different sources following applications to winter wheat at and after anthesis. Field Crops Research. 100:143-154.
Scott D, Welch D, van der Wal R, Elston DA.  2007.  Response of the moss Racomitrium lanuginosum to changes in sheep grazing and snow-lie due to a snow-fence. Applied Vegetation Science. 10:229-238. Abstract
Hermans C, Hammond JP, Verbruggen N, White PJ.  2007.  Response to Andrews et al.: Correlations and causality. Trends in Plant Science. 12:532-533. Abstract
Krogh PH, Griffiths BS, Demsar D, Bohanec M, Debeljak M, Andersen MN, Sausse C, Birch ANE, Caul S, Holmstrup M et al..  2007.  Responses by earthworms to reduced tillage in herbicide tolerant maize and Bt maize cropping systems. Pedobiologia. 51:219-227. Abstract
Forster BP, Herberle-Bors E, Kasha KJ, Touraev A.  2007.  The resurgence of haploids in higher plants. Trends in Plant Science. 12:368-375. Abstract
Jones JT, Furlanetto C, Phillips M.  2007.  The role of flavonoids produced in response to cyst nematode infection of Arabidopsis thaliana. Nematology. 9:671-677. Abstract
de Dorlodot S, Forster BP, Pag L, Price AH, Tuberosa R, Draye X.  2007.  Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science. 12:474-481. Abstract
2008
Lansade L, Bouissou MF, Erhard HW.  2008.  Reactivity to isolation and association with conspecifics: A temperament trait stable across time and situations. Applied Animal Behaviour Science. 109(2-4):355-373.
Jayakody S, Sibbald AM, Lambin X, Gordon IJ.  2008.  Red deer (Cervus elaphus) vigilance behaviour differs according to human disturbance type and habitat. Wildlife Biology. 14:81-91.
Mougeot F, Moseley M, Leckie F, Martinez-Padilla, J.; Millan J, Miller A, Pounds N, Irvine RJ.  2008.  Reducing tick burdens on chicks by treating breeding female grouse with permethrin. Journal of Wildlife Management. 72(2):468-472.
Izquierdo SS, Izquierdo LR, Gotts NM.  2008.  Reinforcement learning dynamics in social dilemmas. Journal of Artificial Societies and Social Simulation.. 11(2.1)
Singh BK, Nunan N, Ridgway KP, McNicol J, Young JPW, Daniell TJ, Prosser JI, Millard P.  2008.  Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10(2):534-541.
Nijnik M, Bizikova L.  2008.  Responding to the Kyoto Protocol through forestry: a comparison of opportunities for several countries in Europe. Forest Policy and Economics. 10(4):257-269.
McGechan MB, Lewis DR, Vinten AJA.  2008.  A river water pollution model for assessment of best management practices for livestock farming. Biosystems Engineering. 99(2):292-303.
Fomina M, Charnock JM, Hillier S, Alvarez R, Livens F, Gadd GM.  2008.  Role of fungi in the biochemical fate of depleted uranium. Current Biology. 18(9):R375-R377.
Schmalenberger A, Hodge S, Bryant A, Hawkesford M, Singh B, Kertesz MA.  2008.  The role of Variovorax and other Comamonadaceae in sulphur transformations by microbial wheat rhizosphere communities exposed to different sulphur fertilization regimes. Environmental Microbiology. 10(6):1486-1500.
Hopkins DW, Sparrow AD, Gregorich EG, Novis P, Elberling B, Greenfield LG.  2008.  Redistributed lacustrine detritus as a spatial subsidy of biological resources for soils in an Antarctic dry valley. Geoderma. 144:86-92. Abstract
Debeljak M, Squire GR, Demsar D, Young MW, Dzeroski S.  2008.  Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
Singh BK, Nunan N, Ridgway KP, McNicol JW, Young JPW, Daniell TJ, Prosser JI, Millard P.  2008.  Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10:534-541. Abstract
Zhan J, Fitt BDL, Pinnschmidt HO, Oxley SJP, Newton AC.  2008.  Resistance, epidemiology and sustainable management of Rhynchosporium secalis populations on barley. Plant Pathology. 57:1-14. Abstract
Iglesias-Rodriguez MD, Buitenhuis ET, Raven JA, Schofield O, Poulton AJ, Gibbs S, Halloran PR, de Baar HJW.  2008.  Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
Nart P, Naylor SW, Huntley JF, McKendrick IJ, Gally DL, Low JC.  2008.  Responses of cattle to gastrointestinal colonization by Escherichia coli O157:H7. Infection and Immunity. 76:5366-5372. Abstract
Griffiths BS, Liu Q, Wang H, Zhang B, Kuan HL, McKenzie BM, Hallett PD, Neilson R, Daniell TJ.  2008.  Restoration of soil physical and biological stability are not coupled in response to plants and earthworms. Ecological Restoration. 26:102-104. Abstract
Hancock RD, Roberts AG, Viola R.  2008.  A role for symplastic gating in the control of the potato tuber life cycle. Plant Signaling and Behaviour. 3:27-29. Abstract
Ingram JSI, Gregory PJ, Izac AM.  2008.  The role of agronomic research in climate change and food security policy. Agriculture, Ecosystems and Environment. 126:4-12. Abstract
Mahmood-ul-Hassan M, Gregory PJ.  2008.  The role of rainfall intensity and soil in determining rates of flow through cryoturbated chalk. Pakistan Journal of Science and Industrial Research. 51:235-241.
Brown JWS, Shaw PJ.  2008.  The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.
2009
Warren CR, Birnie RVB.  2009.  Re-powering Scotland: windfarms and the "Energy or Environment" debate. Scottish Geographical Journal. 125(2):97-126.
Grelet GA, Johnson D, Paterson E, Anderson IC, Alexander IJ.  2009.  Reciprocal carbon and nitrogen transfer between an ericaceous dwarf shrub and fungi isolated from Piceirhiza bicolorata ectomycorrhizas. New Phytologist. 182(2):359-366.
Friberg N, Christensen JB, Olafsson JS, Gislason GM.  2009.  Relationships between structure and function in streams contrasting in temperature: possible impacts of climate change on running water ecosystems. Freshwater Biology. 54(10):2051-2068.
Pakeman RJ, Leps J, Kleyer M, Lavorel S, Garnier E, consortium V.  2009.  Relative climatic, edaphic and management controls of plant functional trait signatures. Journal of Vegetation Science. 20(1):148-159.
Singh BK, Nunan N, Millard P.  2009.  Response of fungal, bacterial and ureolytic communities to synthetic sheep urine deposition in a grassland soil. FEMS Microbiology Ecology. 70(1):109-117.
Shipley LA, Sorensen-Forbey JS, Moore BD.  2009.  Revisiting the dietary niches: when is a mammalian herbivore a specialist? Integrative and Comparative Biology. 49(3):274-290.
Hancock RD.  2009.  Recent patents on vitamin C: Opportunities for crop improvement and single-step biological manufacture. Recent Patents on Food, Nutrition and Agriculture. 1:39-49. Abstract
Salse J, Abrouk M, Bolot S, Guilhot N, Courcelle E, Faraut T, Waugh R, Close TJ, Messing J, Feuillet C.  2009.  Reconstruction of monocotyledonous proto-chromosomes reveals faster evolution in plants than in animals. Proceedings of the National Academy of Sciences, USA. 106:14908-14913.
White PJ, Bradshaw JE, Dale MFB, Ramsay G, Hammond JP, Broadley MR.  2009.  Relationships between yield and mineral concentrations in potato tubers. Hortscience. 44:6-11. Abstract
Spezia L.  2009.  Reversible jump and the label switching problem in hidden Markov models. Journal of Statistical Planning and Inference. 139:2305-2315.
Barr P, Hallett PD.  2009.  Rheological stabilisation of wet soils by model root and fungal exudates depends on clay mineralogy. European Journal of Soil Science. 60:525-538. Abstract
Hinsinger P, Bengough AG, Vetterlein D, Young IM.  2009.  Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.
Ma'shum M, Tisdall JM, Borrell AK, McKenzie BM, Gill JS, Kusnarta IGM, Sukartono M, Van Cooten DE.  2009.  Rice responses to soil management in rice-based cropping system in the semi-arid tropics of southern Lombok, Eastern Indonesia. Field Crops Research. 110:197-206. Abstract
Rosso MN, Jones JT, Abad P.  2009.  RNAi and functional genomics in plant parasitic nematodes. Annual Review of Phytopathology. 47:207-232.
Wang MH, Hu XH, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo ZW.  2009.  Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Computational Biology. 5:-e1000317.
Lewsey M, Surette M, Robertson FC, Ziebell H, Choi SH, Ryu KH, Canto T, Palukaitis P, Payne T, Walsh JA et al..  2009.  The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant-Microbe Interactions. 22:642-654. Abstract
Lawson DJ, Jensen HJ.  2009.  The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology. 257:696-703.
Gregory PJ, Bengough AG, Grinev DV, Schmidt S, Thomas WTB, Wojciechowski T, Young IM.  2009.  Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
McGavin WJ, MacFarlane SA.  2009.  Rubus chlorotic mottle virus, a new Sobemovirus infecting raspberry and bramble. Virus Research. 139:10-13. Abstract
2010
Matthews KB, Rivington M, Blackstock KL, McCrum G, Buchan K, Miller DG.  2010.  Raising the bar? The challenge of evaluating the outcomes of environmental modelling and software Environmental Modelling and Software. 26(3):247-257.
Shaw RF, Iason GR, Pakeman RJ, Young MR.  2010.  Regeneration of Salix arbuscula and Salix lapponum within a large mammal exclosure: the impacts of microsite and herbivory. Restoration Ecology. 18(Suppl. 1):1-9.
Beale CM, Lennon JJ, Yearsley JM, Brewer MJ, Elston DA.  2010.  Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
Beale CM, Lennon JJ, Yearsley JM, Brewer MJ, Elston DA.  2010.  Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
Villar-Salvador P, Norberto H, Millard P.  2010.  Remobilization of acorn nitrogen for seedling growth in holm oak (Quercus ilex), cultivated with contrasting nutrient availability. Tree Physiology.. 30(2):257-263.
Rousidou C, Papadopoulou K, Zervakis G, Singh BK, Ehaliotis C, Karpouzas DG.  2010.  Repeated application of diluted olive mill wastewater induces changes in the structure of the soil microbial community. European Journal of Soil Biology. 46(1):34-40.
Stutter MI, Richards S, Langan SJ, Lumsdon DG.  2010.  Reply to comment on 'Multi-element' signatures of stream sediments and their sources under moderate to low flow conditions. Applied Geochemistry. 25(10):1617-1619.
Vittoz P, Bayfield N, Brooker R, Elston DA, Duff EI, Theurillat JP, Guisan A.  2010.  Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.
Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2010.  The response of organic matter mineralisation to nutrient and substrate additions in sub-arctic soils. Soil Biology and Biochemistry. 42(1):92-100.
Gastal F, Dawson LA, Thornton B.  2010.  Responses of plant traits of four grasses from contrasting habitats to defoliation and N supply. Nutrient Cycling in Agroecosystems. 88(2):245-258.
Milns I, Beale CM, Smith VA.  2010.  Revealing ecological networks using Bayesian network inference algorithms. Ecology. 91(7):1892-1899.
Sawyer AM, Pasternack GB, Moir HJ, Fulton AA.  2010.  Riffle-pool maintenance and flow convergence routing confirmed on a large gravel bed river. Geomorphology. 114(3):143-160.
Hough RL, Towers W, Aalders IH.  2010.  The risk of peat erosion from climate change: land management combinations: an assessment with bayesian belief networks. Human and Ecological Risk Assessment. 16(5):962-976.
Stutter MI, Demars BOL, Langan SJ.  2010.  River phosphorus cycling: separating biotic and abiotic uptake during short-term changes in sewage effluent loading. Water Research.. 44(15):4425-4436.
Fominai M, Burford EP, Hillier S, Kierans M, Gadd GM.  2010.  Rock building fungi. Geomicrobiology Journal. 27(6-7):624-629.
Ruiz-Fons F, Gilbert L.  2010.  The role of deer as vehicles to move ticks, Ixodes ricinus, between contrasting habitats. International Journal for Parasitology. 40(9):1013-1020.
Robinson D, Trinder C, Davidson H, Brooker RW.  2010.  Root-shoot growth responses during interspecific competition quantified using allometric modelling. Annals of Botany. 106(6):921-926.
Robinson G, Wright S, Elwin K, Hadfield SJ, Katzer F, Bartley PM, Hunter PR, Nath M, Innes EA, Chalmers RM.  2010.  Re-description of Cryptosporidium cuniculus Inman and Takeuchi 1979 (Apicomplexa:Cryptosporidiidae): morphology, biology and phylogeny. International Journal for Parasitology. 40:1539-1548.
Oliva R, Win J, Raffaele S, Boutemy L, Bozkurt TO, Chaparro-Garcia A, Segretin ME, Stam R, Schornack S, Cano LM et al..  2010.  Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.
Beale CM, Lennon JJ, Yearsley JM, Brewer MJ, Elston DA.  2010.  Regression analysis of spatial data. Ecology Letters. 13:246-264.
Simpson CG, Manthri S, Raczynska KD, Kalyna M, Lewandowska D, Kusenda B, Maronova M, Szweykowska-Kulinska Z, Jarmolowski A, Barta A et al..  2010.  Regulation of plant gene expression by alternative splicing. Biochemical Society Transactions. 38:667-671.
Morris WL, Shepherd T, Verrall SR, McNicol JW, Taylor MA.  2010.  Relationships between volatile and non-volatile metabolites and attributes of processed potato flavour. Phytochemistry. 71:1765-1773.
Lees AK, Brierley JL, Stewart JA, Hilton AJ, Wale SJ, Gladders P, Bradshaw NJ, Peters JC.  2010.  Relative importance of seed-tuber and soilborne inoculum in causing black dot disease of potato. Plant Pathology. 59:693-702.
Wattegedera S, Watson DM, Hope JC, Kaiser P, Sales J, McInnes CJ, Entrican G.  2010.  Relative quantitative kinetics of interferon-gamma and interleukin-10 mRNA and protein production by activated ovine peripheral blood mononuclear cells. Veterinary Immunology and Immunopathology. 136:34-42.
Vittoz P, Bayfield N, Brooker R, Elston DA, Duff EI, Theurillat JP, Guisan A.  2010.  Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.
Thorsen MK, Hopkins DW, Woodward S, McKenzie BM.  2010.  Resilience of microorganisms and aggregation of a sandy calcareous soil to amendment with organic and synthetic fertilizer. Soil Use and Management. 26:149-157.
Mickovski SB, Bransby MF, Bengough AG, Davies MCR, Hallett PD.  2010.  Resistance of simple plant root systems to uplift loads. Canadian Geotechnical Journal. 47:78-95. Abstract
Hartley IP, Hopkins DW, Sommerkorn M, Wookey PA.  2010.  The response of organic matter mineralisation to nutrient and substrate additions in subarctic soils. Soil Biology & Biochemistry. 42:92-100.
Paroli R, Spezia L.  2010.  Reversible jump markov chain Monte Carlo methods and segmentation algorithms in hidden Markov models. Australian & New Zealand Journal of Statistics. 52:151-166.
Davies HV.  2010.  The role of 'omics' technologies in food safety assessment. Food Control. 21:1601-1610.
Dupuy L, Gregory PJ, Bengough AG.  2010.  Root growth models: Towards a new generation of continuous approaches. Journal of Experimental Botany. 61:2131-2143.
Kylli P, Nohynek L, Puupponen-Pimia R, Westerlund-Wikstrom B, McDougall GJ, Stewart D, Heinonen M.  2010.  Rowanberry phenolics: compositional analysis and bioactivites. Journal of Agricultural and Food Chemistry. 58:11985-11992.
2011
Matthews KB, Rivington M, Blackstock KL, McCrum G, Buchan K, Miller DG.  2011.  Raising the bar? The challenge of evaluating the outcomes of environmental modelling and software Environmental Modelling and Software. 26:247-257.
Belenguer A, Holtrop G, Duncan SH, Anderson SE, Calder AG, Flint HJ, Lobley GE.  2011.  Rates of production and utilization of lactate by microbial communities from the human colon. FEMS Microbiology Ecology. 77:107-119.
Mantelin S, Peng H, Li B, tamian HS, Takken FLW, Kaloshian I.  2011.  The receptor-like kinase SlSERK1 is required for Mi-1-mediated resistance to potato aphids in tomato. Plant Journal. 67:459-471.
Hammond JP, Mayes S, Bowen HC, Graham NS, Hayden RM, Love CG, Spracklen WP, Wang J, Welham SJ, White PJ et al..  2011.  Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa. Plant Physiology. 156:1230-1241.
Rojas I, Becerra P, Galvez N, Laker J, Bonacic C, Hester AJ.  2011.  Relationship between fragmentation, degradation and native and exotic species richness in an Andean temperate forest in Chile. Gayana Botanica. 68:163-175.
Silvar C, Casas AM, Igartua E, Ponce-Molina LJ, Gracia MP, Schweizer G, Herz M, Flath K, Waugh R, Kopahnke D et al..  2011.  Resistance to powdery mildew in Spanish barley landraces is controlled by different sets of quantitative trait loci. Theoretical and Applied Genetics. 123:1019-1028.
Sparrow AD, Gregorich EG, Hopkins DW, Novis P, Elberling B, Greenfield LG.  2011.  Resource limitations on soil microbial activity in an Antarctic dry valley. Soil Science Society of America Journal. 75:2188-2197.
Nazaries L, Tate KR, Ross DJ, Singh J, Dando J, Saggar S, Baggs EM, Millard P, Murrell JC, Singh BK.  2011.  Response of methanotrophic communities to afforestation and reforestation in New Zealand. ISME Journal. 5:1832-1836.
Crawfurd KJ, Raven JA, Wheeler GL, Baxter EJ, Joint I.  2011.  The response of Thalassiosira pseudonana to long-term exposure to increased CO2 and decreased pH. PLoS ONE. 6:e26995.
Sibbald AM, Hooper RJ, McLeod JE, Gordon IJ.  2011.  Responses of red deer (Cervus elaphus) to regular disturbance by hill walkers. European Journal of Wildlife Research. 57:817-825.
Kennedy E, Curran J, Mayes B, McEvoy M, Murphy JP, O'Donovan M.  2011.  Restricting dairy cow access time to pasture in early lactation: the effects on milk production, grazing behaviour and dry matter intake. Animal. 5:1805-1813.
Beesley L, Moreno-Jimenez E, Gomez-Eyles JL, Harris E, Robinson B, Sizmur T.  2011.  A review of biochars' potential role in the remediation, revegetation and restoration of contaminated soils. Environmental Pollution. 159:3269-3282.
Fuschino JR, Guschina IA, Dobson G, Yan ND, Harwood JL, Arts MT.  2011.  Rising water temperatures alter lipid dynamics and reduce N-3 essential fatty acid concentrations in Scenedesmus obliquus (Chlorophyta). Journal of Phycology. 47:763-774.
Fuschino JR, Guschina IA, Dobson G, Yan ND, Harwood JL, Arts MT.  2011.  Rising water temperatures alter lipid dynamics and reduce N-3 essential fatty acid concentrations in Scenedesmus obliquus (chlorophyta). Journal of Phycology. 47:763-764.
Aalders IH, Hough RL, Towers W.  2011.  Risk of erosion in peat soils - an investigation using Bayesian belief networks. Soil Use and Management. 27:538-549.
Ashfaq M, McGavin WJ, MacFarlane SA.  2011.  RNA2 of TRV SYM breaks the rules for tobravirus genome structure. Virus Research. 160:435-438.
Jiang N, Wang MH, Jia TY, Wang L, Leach L, Hackett CA, Marshall DF, Luo ZW.  2011.  A robust statistical method for association-based eQTL analysis. PLoS ONE. 6:e23192.
Bengough AG, McKenzie BM, Hallett PD, Valentine TA.  2011.  Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits. Journal of Experimental Botany. 62:59-68.
Carvalhais LC, Dennis PG, Fedoseyenko D, Hajirezaei MR, Borriss R, von Wiren N.  2011.  Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency. Journal of Plant Nutrition and Soil Science. 174:3-11.
Lux A, Martinka M, Vaculik M, White PJ.  2011.  Root responses to cadmium in the rhizosphere: a review. Journal of Experimental Botany. 62:21-37.
2012
Wening S, Croxford AE, Ford CS, Thomas WTB, Forster BP, Okyere-Boateng G, Nelson SPC, Caligari PDS, Wilkinson MJ.  2012.  Ranking the value of germplasm: new oil palm (Elaeis guineensis) breeding stocks as a case study. Annals of Applied Biology. 160:145-156.
McGavin WJ, Mitchell C, Cock PJA, Wright KM, MacFarlane SA.  2012.  Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA. Journal of General Virology. 93:430-437.
McMenemy LS, Hartley SE, MacFarlane SA, Karley AJ, Shepherd T, Johnson SN.  2012.  Raspberry viruses manipulate the behaviour of their insect vectors. Entomologia Experimentalis et Applicata. 144:56-68.
Stopher KV, Nussey DH, Clutton-Brock TH, Guinness F, Morris A, Pemberton JM.  2012.  Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer. Journal of Evolutionary Biology. 25:2457-2469.
Stutter MI, Shand CA, George TS, Blackwell MSA, Bol R, Mackay RL, Richardson AE, Condron LM, Turner BL, Haygrath PM.  2012.  Recovering phosphorus from soil - A root solution? Environmental Science and Technology. 46:1977-1978.
Engelhardt S, Boevink PC, Armstrong MR, Ramos M, Hein I, Birch PRJ.  2012.  Relocalization of late blight resistance protein R3a to endosomal compartments is associated with effector recognition and required for the immune response. The Plant Cell. 24:5142-5158.
Haregeweyn N, Melese B, Tsunekawa A, Tsubo M, Meshesha D, Balana B.  2012.  Reservoir sedimentation and its mitigating strategies: a case study of Angereb reservoir (NW Ethiopia). Journal of Soil and Sediments. 12:291-305.
Mayor DJ, Thornton B, Hay S, Zuur AF, Nicol GW, McWilliam JM, Witte UFM.  2012.  Resource quality affects carbon cycling in deep-sea sediments. ISME Journal. 6:1740-1748.
Sutherland LA.  2012.  Return of the gentleman farmer?: conceptualising gentrification in UK agriculture Journal of Rural Studies. 28:568-576.
Schulte RPO, Fealy R, Creamer RE, Towers W, Harty T, Jones RJA.  2012.  A review of the role of excess soil moisture conditions in constraining farm practices under Atlantic conditions. Soil Use and Management. 28:580-589.
Dahlin AS, Edwards AC, Lindstrom BEM, Ramezanian A, Shand CA, Walker RL, Watson CA, Oborn I.  2012.  Revisiting herbage sample collection and preparation procedures to minimise risks of trace element contamination. European Journal of Agronomy. 43:33-39.
Houston K, Wolff K.  2012.  Rhinanthus minor population genetic structure and subspecies: Potential seed sources of a keystone species in grassland restoration projects. Perspectives in Plant Ecology Evolution and Systematics. 14:423-433.
Tan HW, Weir BS, Carter N, Heenan PB, Ridgway HJ, James EK, Sprent JI, Young JPW, Andrews M.  2012.  Rhizobia with 16S rRNA and nifH similar to Mesorhizobium huakuii but Novel recA, glnII, nodA and nodC genes are symbionts of New Zealand Carmichaelinae. PLoS ONE, e47677. 7
Avrova AO, Knogge W.  2012.  Rhynchosporium commune: a persistent threat to barley cultivation. Molecular Plant Pathology. 13:986-997.
Stutter MI, Chardon WJ, Kronvang B.  2012.  Riparian buffer strips as a multifunctional management tool in agricultural landscapes: introduction. Journal of Environmental Quality. 41:297-303.
Cole LJ, Brocklehurst S, McCracken DI, Harrison W, Robertson D.  2012.  Riparian field margins: their potential to enhance biodiversity in intensively managed grasslands. Insect Conservation and Diversity. 5:86-94.
Hough RL, Booth P, Avery LM, Rhind SM, Crews C, Bacon J, Campbell CD, Tompkins D.  2012.  Risk assessment of the use of PAS100 green composts in sheep and cattle production in Scotland. Waste Management. 32:117-130.
Bradford RA, O'Sullivan JJ, van der Craats IM, Krywkow J, Rotko P, Bonaiuto M, Waylen K, Schelfaut K.  2012.  Risk perception - Issues for flood management in Europe. Natural Hazards and Earth System Sciences. 12:2299-2309.
Demars BOL, Potts J, Tremolieres M, Thiebaut G, Gougelin N, Nordmann V.  2012.  River macrophyte indices: not the Holy Grail!. Freshwater Biology. 57:1745-1759.
Gonzalez I, Rakitina DV, Semashko MA, Taliansky ME, Praveen S, Palukaitis P, Carr JP, Kalinina N, Canto T.  2012.  RNA binding is more critical to the suppression of silencing function of Cucumber mosaic virus 2b protein than nuclear localization. RNA. 18:771-782.
Seresinhe T, Madushika SAC, Seresinhe Y, Lal PK, Orskov ER.  2012.  The role of free radicals in brassica-induced anaemia of sheep: an ESR spin trapping study. Asian-Australiasian Journal of Animal Sciences. 25:1404-1410.
Dunn SM, Darling WG, Birkel C, Bacon JR.  2012.  The role of groundwater characteristics in catchment recovery from nitrate pollution. Hydrology Research. 43:560-575.
Matthies E, Selge S, Klockner CA.  2012.  The role of parental behaviour for the development of behaviour specific environmental norms - the example of recycling and re-use behaviour. Journal of Environmental Psychology. 32:277-284.
Charkowski A, Blanco C, Condemine G, Expert D, Franza T, Hayes C, Hugouvieux-Cotte-Pattat N, Lopez Solanilla E, Low D, Moleleki L et al..  2012.  The role of secretion systems and small molecules in soft-rot enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50:425-449.
Graham SL, Millard P, Hunt JE, Rogers GND, Whitehead D.  2012.  Roots affect the response of heterotrophic soil respiration to temperature in tussock grass microcosms. Annals of Botany. 110:253-258.
Ibarra JT, Galvez N, Gimona A, Altamirano TA, Rojas I, Hester AJ, Laker AJ, Bonacic C.  2012.  Rufous-legged owl (Strix rufipes) and Austral pygmy owl (Glaucidium nanum) stand use in a gradient of disrupted and old growth Andean temperate forests, Chile. Studies on Neotropical Fauna and Environment. 47:33-40.
Nicholson A, Wilkinson ME, O'Donnell G, Quinn PF.  2012.  Runoff attenuation features: a sustainable flood mitigation strategy in the Belford catchment, UK. Area. 44:463-469.
2013
McGeoch SC, Johnstone AM, Lobley GE, Adamson J, Hickson K, Holtrop G, Fyfe C, Clark LF, Pearson DWM, Abraham P et al..  2013.  A randomized crossover study to assess the effect of an oat-rich diet on glycaemic control, plasma lipids and postprandial glycaemia, inflammation and oxidative stress in Type 2 diabetes. Diabetic Medicine. 30:1314-1323.
Kildea S, Quinn L, Mehenni-Ciz J, Cooke DEL, Perez FM, Deahl KL, Griffin D, Cooke LR.  2013.  Re-emergence of the Ib mitochondrial haplotype within the British and Irish Phytophthora infestans populations. European Journal of Plant Pathology. 135:237-242.
Critchley CNR, Mitchell RJ, Rose RJ, Griffiths JB, Jackson E, Scott H, Davies OD.  2013.  Re-establishment of Calluna vulgaris (L.) Hull in an eight-year grazing experiment on upland acid grassland. Journal of Nature Conservation. 21:22-30.
McKenzie SW, Vanbergen AJ, Hails RS, Jones TH, Johnson SN.  2013.  Reciprocal feeding facilitation between above- and below-ground herbivores. Biology Letters. 9
Matthews KB, Buchan K, Miller DG, Towers W.  2013.  Reforming the CAP - with area-based Pillar 1 payments, who wins and who loses? Land Use Policy. 31:209-222.
Jarvis S, Woodward S, Alexander IJ, Taylor AFS.  2013.  Regional scale gradients of climate and nitrogen deposition drive variation in ectomycorrhizal fungal communities associated with native Scots pine. Global Change Biology. 19:1688-1696.
Speed JDM, Austrheim G, Hester AJ, Solberg EJ, Tremblay JP.  2013.  Regional-scale alteration of clear-cut forest regeneration caused by moose browsing. Forest Ecology and Management. 289:289-299.
Hunter LJR, Westwood JH, Heath G, Macaulay K, Smith AG, MacFarlane SA, Palukaitis P, Carr JP.  2013.  Regulation of RNA-dependent RNA polymerase 1 and isochorismate synthase gene expression in arabidopsis. PLoS ONE. 8:e66530.
Coutinho BG, Mitter B, Talbi C, Sessitsch A, Bedmar E, Halliday N, James EK, Camara M, Venturi V.  2013.  Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. Applied and Environmental Microbiology. 79:4421-4432.
Kammer PM, Schoeb C, Eberhard G, Gallina R, Meyer R, Tschanz C.  2013.  The relationship between soil water storage capacity and plant species diversity in high alpine vegetation. Plant Ecology and Diversity. 6:457-466.
Brierley JL, Sullivan L, Hilton AJ, Wale SJ, Hilton AJ, Kielebrink DT, Lees AK.  2013.  Relationship between Spongospora subterranea f.sp. subterranea soil inoculum level, host resistance and powdery scab on potato tubers in the field. Plant Pathology. 62:413-420.
Gushchin VA, Andreev DE, Taliansky M, MacFarlane SA, Solovyev AG, Morozov SY.  2013.  Replacement of amino acid in the ORF6 protein of tobacco mosaic virus prevents the formation of a complex with eEF1A and the cooperative binding to nucleic acids in vitro. Proceedings of the Russian Academy of Sciences. 448:1-5.
Tilsner J, Linnik O, Louveaux M, Roberts IM, Chapman SN, Oparka KJ.  2013.  Replication and trafficking of a plant virus are coupled at the entrances of plasmodesmata. Journal of Cell Biology. 201:981-995.
Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, MacLean D, Cock PJ, Leggett RM, Bryan GJ et al..  2013.  Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. Plant Journal. 76:530-544.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2013.  The response of alpine Salix shrubs to long-term experimental browsing varies with elevation and herbivore density. Arctic Antarctic and Alpine Research. 45:584-593.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.