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2005
Dyckmans J, Scrimgeour CM, Schmidt O.  2005.  A simple and rapid method for labelling earthworms with 15N and 13C. Soil Biology & Biochemistry. 37:989-993. Abstract
Stafne ET, Clark JR, Weber CA, Graham J, Lewers KS.  2005.  Simple sequence repeat (SSR) markers for genetic mapping of raspberry and blackberry. Journal of the American Society of Horticultural Science. 130:722-728. Abstract
Spooner DM, McLean K, Ramsay G, Waugh R, Bryan GJ.  2005.  A single domestication for potato based on multilocus amplified fragment length polymorphism genotyping. Proceedings of the National Academy of Sciences, USA. 102:14694-14699. Abstract
Rostoks N, Borevitz JO, Hedley PE, Russell JR, Mudie S, Morris J, Cardle L, Marshall DF, Waugh R.  2005.  Single feature polymorphism discovery in the barley transcriptome. Genome Biology. 6:-R54. Abstract
Boag B, Deeks L, Orr A, Neilson R.  2005.  A spatio-temporal analysis of a New Zealand flatworm (Arthurdendyus triangulatus) population in western Scotland. Annals of Applied Biology. 147:81-88. Abstract
Forbes GA, Chac MG, Kirk HG, Huarte MA, Van Damme M, Distel S, Mackay GR, Stewart HE, Lowe R, Duncan JM et al..  2005.  Stability of resistance to Phytophthora infestans in potato: an international evaluation. Plant Pathology. 54:364-372. Abstract
Rangel-Castro JI, Killham K, Ostle N, Nicol GW, Anderson IC, Scrimgeour CM, Ineson P, Meharg A, Prosser JI.  2005.  Stable isotope probing analysis of the influence of liming on root exudate utilization by soil microrganisms. Environmental Microbiology. 7:828-838. Abstract
Canto T, Palukaitis P.  2005.  Subcellular distribution of mutant movement proteins of Cucumber mosaic virus fused to green fluorescent proteins. Journal of General Virology. 86:1223-1228. Abstract
Malloch G, Fenton B.  2005.  Super-infections of Wolbachia in byturid beetles and evidence for genetic transfer between A and B super groups of Wolbachia. Molecular Ecology. 14:627-637. Abstract
Lee L, Kaplan IB, Ripoll DR, Liang D, Palukaitis P, Gray SM.  2005.  A surface loop of the potato leafroll virus coat protein is involved in virion assembly, systemic movement and aphid transmission.. Journal of Virology. 79:1207-1214. Abstract
2006
Soulsby C, Tetzlaff D, Dunn SM, Waldron S.  2006.  Scaling up and out in runoff process understanding - insights from nested experimental catchment studies. Hydrological Processes - HP Today. 20:2461-2465.
Gimona A, Birnie RVB, Sibbald AR.  2006.  Scaling up of a mechanistic dynamic model in a GIS environment to assess temperate grassland production at the regional scale. Grass and Forage Science. 61(3):315-331.
Omer RM, Hester AJ, Gordon IJ, Swaine MD, Raffique SM.  2006.  Seasonal changes in pasture biomass, production and offtake under the transhumance system in northern Pakistan. Journal of Arid Environments. 67(4):641-660.
Edgar P, Hursthouse A, Matthews J, Davies I, Hillier S.  2006.  Sediment Influence on congener-specific PCB bioaccumulation by Mytilus Edulis: a case study from an intertidal hot spot, Clyde Estuary, UK. Journal of Environmental Monitoring. 8(9):887-896.
Ramos JA, Bugalho MN, Cortez P, Iason GR.  2006.  Selection of trees for rubbing by red and roe deer in forest plantations. Forest Ecology and Management. 222(1-3):39-45.
Bacon JR, Farmer JG, Dunn SM, Graham MC, Vinogradoff SI.  2006.  Sequential extraction combined with isotope analysis as a tool for the investigation of lead mobilization in soils. Application to organic-rich soils in an upland catchment in Scotland. Environmental Pollution. 141(3):469-481.
Boone RB, Thirgood SJ, Hopcraft JGC.  2006.  Serengeti wildebeest migratory patterns modelled from rainfall and new vegetation growth. Ecology. 87(8):1987-1994.
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser J, Wheateley R, McNicol J, Millard P.  2006.  Sheep urine deposition is a source of heterogeneity in upland grassland soil microbial community structure. FEMS Microbiology Ecology. 56(2):310-320.
Gauci V, Chapman SJ.  2006.  Simultaneous inhibition of CH4 efflux and stimulation of sulphate reduction in peat subject to simulated acid rain. Soil Biology and Biochemistry. 38(12):3506-3510.
Barton ME, Hillier S, Watson GVR.  2006.  The slip surface in the D zone of the barton clay. Quarterly Journal of Engineering Geology and Hydrogeology. 39(4):357-370.
Urama KC, Dilks CF, Dunn SM, Ferrier RC.  2006.  Socio-economic and bio-physical modelling of diffuse pollution: closing the gaps. Archiv fur Hydrobiologie. Large Rivers Supplement. 17:175-199.
Slee B.  2006.  The socio-economic evaluation of the impact of forestry on rural development: a regional level analysis. Forest Policy and Economics. 8(5):542-544.
Aitkenhead MJ, McDonald AJS.  2006.  The state of play in machine/environment interactions. Artificial Intelligence Review. 25:247-276.
Walker DM, Perez-Barberia FJ, Marion G.  2006.  Stochastic modelling of ecological processes using hybrid Gibbs samplers. Ecological Modelling. 198(1-2):40-52.
Artz RRE, Chapman SJ, Campbell CD.  2006.  Substrate utilisation profiles of microbial communities in peat are depth-dependent and correlate with whole soil FTIR profiles. Soil Biology and Biochemistry. 38(9):2958-2962.
Guggenheim S, Adams JM, Bain DC, Bergaya F, Brigatti MF, Drits VA, Eberl DD, Formoso MLL, Galan E, Kogure T et al..  2006.  Summary of recommendations of nomenclature committees relevant to clay mineralogy: report of the Association Internationale pour l'Etude des Argiles (AIPEA) Nomenclature Committee for 2006. Clays and Clay Minerals. 54(6):761-772.
Zhan J, Stefanato FL, McDonald BA.  2006.  Selection for increased cyproconazole tolerance in Mycosphaerella graminicola through local adaptation and in response to host resistance. Molecular Plant Pathology. 7:259-268. Abstract
Raven JA.  2006.  Sensing inorganic carbon: C02 and HCO3. Biochemical Journal. 396:e5-e7.
Nunan N, Singh B, Reid E, Ord B, Papert A, Squires J, Prosser JI, Wheatley RE, McNicol JW, Millard P.  2006.  Sheep-urine-induced changes in soil microbial community structure. FEMS Microbiology Ecology. 56:310-320. Abstract
Hassall M, Adl S, Berg M, Griffiths BS, Scheu S.  2006.  Soil fauna-microbe interactions: towards a conceptual framework for research. European Journal of Soil Biology. 42:S54-S60. Abstract
Griffiths BS, Caul S, Thompson J, Birch ANE, Scrimgeour CM, Cortet J, Foggo A, Hackett CA, Krogh PH.  2006.  Soil microbial and faunal community responses to Bt maize and insecticide in two soils. Journal of Environmental Quality. 35:734-741. Abstract
Wall DH, Adams BJ, Barrett JE, Hopkins DW, Virginia RA.  2006.  A synthesis of soil biodiversity and ecosystem functioning in Victoria Land, Antarctica. Soil Biology & Biochemistry. 38:3001-3002. Abstract
Niehl A, Lacomme C, Erban A, Kopka J, Kr U, Fisahn J.  2006.  Systemic Potato virus X infection induces defence gene expression and accumulation of . Functional Plant Biology. 33:593-604. Abstract
2007
Pakeman RJ, Quested HM.  2007.  Sampling plant functional traits: what proportion of the species need to be measured? Applied Vegetation Science. 10(1):91-96.
Demars BOL, Edwards AC.  2007.  A seasonal survey of surface water habitats within the River Spey basin, Scotland: major nutrient properties. Aquatic Conservation: Marine and Freshwater Ecosystems. 17(6):565-583.
Fleurance G, Duncan P, Fritz H, Cabaret J, Cortet J, Gordon IJ.  2007.  Selection of feeding sites by horses at pasture: Testing the anti-parasite theory. Applied Animal Behaviour Science. 108(3-4):288-301.
Polhill JG, Pignotti E, Gotts NM, Edwards P, Preece A.  2007.  A semantic grid service for experimentation with an agent-based model of land use change. Journal of Artificial Societies and Social Simulation.. 10(2):2.
Matthiopoulos J, Graham K, Smout S, Asseburg C, Redpath S, Thirgood SJ, Hudson P, Harwood J.  2007.  Sensitivity to assumptions in models of generalist predation on a cyclic prey. Ecology. 88(10):2576-2586.
Carranza J, Perez-Barberia FJ.  2007.  Sexual selection and senescence: Male size-dimorphic ungulates evolved relatively smaller molars than females. American Naturalist. 170(3):370-380.
Freppaz M, Williams BL, Edwards AC, Scalenghe R, Zanini E.  2007.  Simulating soil freeze/thaw cycles typical of early and late winter alpine conditions: implications for N and P availability. Applied Soil Ecology. 35(1):247-255.
Aherne J, Helliwell RC, Lilly A, Ferrier RC, Jenkins A.  2007.  Simulation of soil and surface water acidification: Divergence between one-box and two-box models? Applied Geochemistry. Special Issue on Acid Rain2005, 7th International Conference on Acid Deposition, June 12-17th 2005, Prague, Czech Republic.. 22(6):1167-1173.
Evans KL, Lennon JJ, Gaston KJ.  2007.  Slopes of avian species - area relationships, human population density, and environmental factors. Avian Conservation and Ecology, Ecologie et Conservation des Oiseaux 2(2): 7..
Hewitson LA, Gordon IJ, Dumont B.  2007.  Social context affects patch-leaving decisions of sheep in a variable environment. Animal Behaviour. 74(2):239-246.
Slee B.  2007.  Social indicators of multifunctional rural land use: the case of forestry in the UK. Agriculture, Ecosystems and Environment. 120(1):31-40.
Hough RL.  2007.  Soil and human health: an epidemiological review. European Journal of Soil Science. 58(5):1200-1212.
Jensen OP, Barbara BJ, Magnuson JJ, Card VM, Futter MN, Soranno PA, Stewart KM.  2007.  Spatial analysis of ice phenology trends across the Laurentian Great Lakes region during a recent warming period. Limnology and Oceanography. 52:2013-2026.
Helliwell RC, Davies JJL, Jenkins A, Evans CD, Coull MC, Reynolds B, Norris D, Ferrier RC.  2007.  Spatial and seasonal variations in nitrogen leaching and acidity across four acid-impacted regions of the UK. Water, Air and Soil Pollution. 185(1-4):3-19.
Aitkenhead-Peterson JA, Smart RP, Aitkenhead MJ, Cresser MS, McDowell WH.  2007.  Spatial and temporal variation of dissolved organic carbon export from gauged and ungauged watersheds of Dee Valley, Scotland: Effect of land cover and C:N. Water Resources Research article no. W05442.. 43(5)
Kerlin D, Haydon D, Miller D, Aebischer N, Smith A, Thirgood SJ.  2007.  Spatial synchrony in red grouse population dynamics. Oikos. 116(12):2007-2016.
Gaston KJ, Davies RC, David C, Orme L, Olson VA, Thomas GH, Ding TS, Rasmussen PC, Lennon JJ, Bennett PM et al..  2007.  Spatial turnover in the global avifauna. Proceedings of the Royal Society of London, B. 274(1618):1567-1574.
Garnier E, Ansquer P, Castro H, Cruz P, Dolezal J, Eriksson O, Fortunel C, Freitas H, Golodets C, Grigulis C et al..  2007.  A standardized methodology to assess the effects of land use change on plant traits, communities and ecosystem functioning in grasslands. Annals of Botany. 99(5):967-985.
Eaton MA, Marshall KB, Gregory RD.  2007.  The status of Capercaillie, Tetrao urogallus, in Scotland in the winter 2003-04. Bird Study. 54:145-153.
Lutz E, Birkeland KW, Kronholm K, Hansen K, Aspinall RJ.  2007.  Surface hoar characteristics derived from a snow micropenetrometer using moving window statistical operations. Cold Regions Science and Technology. 47(1-2):118-133.
Small LA.  2007.  Sustainable (rural) livelihoods: a critical review. Canadian Journal of Development Studies. 28:27-38.
Fischer A, Petersen L, Feldkoetter C, Huppert W.  2007.  Sustainable governance of natural resources and institutional change - an analytical framework. Public Administration and Development. 27(2):123-137.
Poulsen M, Schroder M, Wilcks A, Kroghsbo S, Lindecrona RH, Miller A, Frenzel T, Danier J, Rychlik M, Shu QY et al..  2007.  Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
Horgan GW.  2007.  Sample size and replication in 2D gel electrophoresis studies. Journal of Proteome Research. 6:2884-2887. Abstract
Mitchell A, Oommen M, Bhatia P, Scott P, Robertson ZC, Stewart D, McDougall GJ, Wallace HM.  2007.  Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract
Armstrong MR, Husmeier D, Phillips MS, Blok VC.  2007.  Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida. Journal of Molecular Evolution. 64:689-701. Abstract
Leitch ECM, Walker AW, Duncan SH, Holtrop G, Flint HJ.  2007.  Selective colonization of insoluble substrates by human faecal bacteria. Environmental Microbiology. 9:667-679. Abstract
Lewsey M, Robertson FC, Canto T, Palukaitis P, Carr JP.  2007.  Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein. Plant Journal. 50:240-252. Abstract
Gibson T, Blok VC, Dowton M.  2007.  Sequence and characterization of six mitochondrial subgenomes from Globodera rostochiensis: multipartite structure is conserved amongst close nematode relatives. Journal of Molecular Evolution. 65:308-315. Abstract
Syed NH, Flavell AJ.  2007.  Sequence-specific amplification polymorphisms (SSAPs): a multi-locus approach for analyzing transposon insertions. Nature Protocols. 1:2746-2752.
Zhan J, Mundt CC, McDonald BA.  2007.  Sexual reproduction facilitates the adaptation of parasites to antagonistic host environments: Evidence from empirical study on the wheat-Mycosphaerella graminicola system. International Journal of Parasitology. 37:861-870. Abstract
Luo ZW, Potokina E, Druka A, Wise R, Waugh R, Kearsey MJ.  2007.  SFP genotyping from Affymetrix arrays is robust but largely detects cis-acting expression regulators. Genetics. 176:789-800. Abstract
Zhan J, Torriani SFF, McDonald BA.  2007.  Significant difference in pathogencity between MAT1-1 and MAT1-2 isolates in the wheat pathogen Mycosphaerella graminicola.. Fungal Genetics and Biology. 44:339-346. Abstract
Wood JC, McKendrick IJ, Gettingby G.  2007.  A simulation model to assess herd-level intervention strategies against E. coli O157. Epidemiology and Infection. 135:749-764. Abstract
Velikova V, Edreva AM, Tsonev T, Jones HG.  2007.  Singlet oxygen quenching by phenylamides and their parent compounds. Zeischrift f. 62c:833-838.
Begg GS, Cullen DW, Iannetta PPM, Squire GR.  2007.  Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots. Transgenic Research. 16:51-63. Abstract
Moora M, Daniell TJ, Kalle H, Liira J, P K, Roosaluste E, Opik M, Wheatley RE, Zobel M.  2007.  Spatial pattern and species richness of boreonemoral forest understorey and its determinants - A comparison of differently managed forests. Forest Ecology & Management. 250:64-70. Abstract
Spooner DM, Fajardo D, Bryan GJ.  2007.  Species limits of Solanum berthaultii Hawkes and S. tarijense Hawkes and the implications for species boundaries in Solanum sect. Petota. Taxon. 56:987-999. Abstract
Sharma SK, Bryan GJ, Winfield MO, Millam S.  2007.  Stability of potato (Solanum tuberosum L.) plants regenerated via somatic embryos, axillary bud proliferated shoots, microtubers and true potato seeds: a comparative phenotypic, cytogenetic and molecular assessment.. Planta. 226:1449-1458. Abstract
Chung BN, Canto T, Palukaitis P.  2007.  Stability of recombinant plant viruses containing genes of unrelated plant viruses. Journal of General Virology. 88:1347-1355. Abstract
Cerm J, Gasp J, De Lorenzi F, Jones HG.  2007.  Stand biometry and leaf area distribution in an old olive grove at Andria, southern Italy. Annals of Forest Science. 64:491-501. Abstract
Bohan DA, Hawes C, Haughton AJ, Denholm I, Champion GT, Perry JN, Clark SJ.  2007.  Statistical models to evaluate invertebrate-plant trophic interactions in arable systems. Bulletin of Entomological Research. 97:265-280. Abstract
Krivtsov V, Garside A, Brendler A, Liddell K, Griffiths BS, Staines HJ.  2007.  A study of population numbers and ecological interactions of soil and forest floor microfauna. Animal Biology. 57:467-484. Abstract
Viola R, Pelloux J, van der Ploeg A, Gillespie T, Marquis N, Roberts AG, Hancock RD.  2007.  Symplastic connection is required for bud outgrowth following dormancy in potato (Solanum tuberosum L.) tubers. Plant, Cell and Environment. 30:973-983. Abstract
2008
Kenyon W, Hill G, Shannon P.  2008.  Scoping the role of agriculture in sustainable flood management. Land Use Policy. 25(3):351-360.
Palacio S, Milla R, Albuixech J, Perez-Rontome C, Camarero JJ, Maestro M, Montserrat-Marti G.  2008.  Seasonal variability of dry matter content and its relationship with shoot growth and nonstructural carbohydrates. New Phytologist. 180(1):133-142.
Guan Y, Waagepetersen R, Beale CM.  2008.  Second-order analysis of inhomogeneous spatial point processes with proportional intensity functions. Journal of American Statistical Association. 103(482):769-777.
DeGabriel JL, Wallis IR, Moore BD, Foley WJ.  2008.  A simple integrative assay to quantify nutritional quality for browsing herbivores. Oecologia. 156(1):107-116.
Milne E, Williams S, Brye K, Easter M, Killian K, Paustian K.  2008.  Simulating soil organic carbon in a rice-soybean-wheat-soybean chronosequence in Prairie County, Arkansas using the Century model. Electronic Journal of Integrative Biosciences. 6(1):41-52.
Michelena P, Gautrais J, Gird JF, Bon R, Deneubourg JL.  2008.  Social cohesion in groups of sheep: Effect of activity level, sex composition and group size. Applied Animal Behaviour Science. 112(1-2):81-93.
Osler GHR, Harrison L, Kanashiro DK, Clapperton MJ.  2008.  Soil microarthropod assemblages under different arable crop rotations in Alberta, Canada. Applied Soil Ecology. 38(1):71-78.
Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA.  2008.  Soil microbial respiration in arctic soil does not acclimate to temperature. Ecology Letters. 11(10):1092-1100.
Nielsen UN, Osler GHR, van der Wal R, Campbell CD, Burslem DFRP.  2008.  Soil pore volume and the abundance of soil mites in two contrasting habitats. Soil Biology and Biochemistry. 40(6):1538-1541.
Stutter MI, Langan SJ, Cooper RJ.  2008.  Spatial and temporal dynamics of stream water particulate and dissolved N, P and C forms along a catchment transect, NE Scotland. Journal of Hydrology. 350(3-4):187-202.
Stutter MI, Langan SJ, Cooper RJ.  2008.  Spatial contributions of diffuse inputs and within-channel processes to the form of stream water phosphorus over storm cycles. Journal of Hydrology. 350(3-4):203-214.
Sang N, Birnie RVB.  2008.  Spatial sampling and public opinion in environmental management: A case study of the Ythan catchment. Land Use Policy. 25(1):30-42.
Weigang Y, Artz RRE, Johnson D.  2008.  Species-specific effects of plants colonising cut-over peatlands on patterns of carbon source utilisation by soil microorganisms. Soil Biology and Biochemistry. 40(2):544-549.
Ryan PC, Hillier S, Wall AJ.  2008.  Stepwise effects of the BCR sequential chemical extraction procedure on dissolution and metal release from common ferromagnesian clay minerals: a combined solution chemistry and X-ray powder diffraction study. The Science of the Total Environment. 407(1):603-614.
Winward G, Avery LM, Frazer-Williams RAD, Jeffrey P, Stephenson T, Jefferson B.  2008.  A study of the microbial quality of grey water and an evaluation of treatment technologies for reuse. Ecological Engineering. 32(2):187-197.
Toberman H, Freeman C, Evans C, Fenner N, Artz RRE.  2008.  Summer drought decreases soil fungal diversity and associated phenol oxidase activity in upland Calluna heathland soil. FEMS Microbiology Ecology. 66(2):426-436.
Toberman H, Evan C, Freeman C, Fenner N, Artz RRE.  2008.  Summer drought effects upon soil and litter phenol oxidase activity and soluble carbon release in an upland Calluna heathland. Soil Biology and Biochemistry. 40(6):1519-1532.
Avery LM, Williams AP, Killham K, Jones DL.  2008.  Survival of Eschericgia coli O157:H7 in waters from lakes, troughs, rivers, puddles and animal drinking troughs. The Science of the Total Environment. 389(2-3):378-385.
Gelan A, Shannon P, Aitkenhead M.  2008.  Sustainable local land use policy: rhetoric and reality. Local Environment. 13(4):291-308.
Bahar B, Schmidt O, Moloney AP, Scrimgeour CM, Begley IS, Monahan FJ.  2008.  Seasonal variation in the C, N and S stable isotope composition of retail organic and conventional Irish beef. Food Chemistry. 106:1299-1305. Abstract
Phillips MS, Blok VC.  2008.  Selection for reproductive ability in Globodera pallida populations in relation to quantitative resistance form Solanum vernei and S.tuberosum ssp. andigena CPC2802. Plant Pathology. 57:573-580. Abstract
Holeva RC, Brown DJF, Curtis RHC, Neilson R.  2008.  Selective recovery of the virus-vector trichodorid nematode Paratrichodorus anemones from soil samples by immunomagnetic capture. European Journal of Plant Pathology. 120:85-89. Abstract
Broadley MR, Hammond JP, King GJ, Astley D, Bowen HC, Meacham MC, Mead A, Pink DAC, Teakle G, Hayden R et al..  2008.  Shoot calcium and magnesium concentrations differ between subtaxa, are highly heritable, and associate with potentially pleiotropic loci in Brassica oleracea. Plant Physiology. 146:1707-1720. Abstract
Jones MR, Raven JA, Leith ID, Cape JN, Smith RI, Fowler D.  2008.  Short-term flux chamber experiment to quantify the deposition of gaseous 15N-NH3 to Calluna vulgaris. Agricultural and Forest Meteorology. 148:893-901. Abstract
Peter KA, Liang D, Palukaitis P, Gray SM.  2008.  Small deletions in the potato leafroll virus readthrough protein affect particle morphology, aphid transmission, virus movement and accumulation. Journal of General Virology. 89:2037-2045. Abstract
Griffiths BS, Caul S, Thompson J, Hackett CA, Cortet J, Pernin C, Krogh PH.  2008.  Soil microbial and faunal responses to herbicide tolerant maize and herbicide in two soils. Plant and Soil. 308:93-103. Abstract
Hartley IP, Hopkins DW, Garnett MH, Sommerkorn M, Wookey PA.  2008.  Soil microbial respiration in arctic soil does not acclimate to temperature. Ecology Letters. 11:1092-1100. Abstract
Mahmood-ul-Hassan M, Akhtar MS, Gregory PJ.  2008.  Solute movement through intact columns of cryoturbated Upper Chalk. Hydrological Processes. 22:2086-2093. Abstract
Kasprowicz L, Malloch G, Pickup J, Fenton B.  2008.  Spatial and temporal dynamics of Myzus persicae clones in fields and suction traps. Agricultural and Forest Entomology. 10:91-100. Abstract
Orfanus T, Bedrna Z, Lichner L, Hallett PD, Knava K, Sebin M.  2008.  Spatial variability of water repellency in pine forest soil. Soil and Water. 3:S123-S129. Abstract
Glasbey CA, Allcroft DJ.  2008.  A spatiotemporal auto-regressive moving average model for solar radiation. Journal of the Royal Statistical Society Series C - Applied Statistics. 57:343-355. Abstract
Nisbet AJ, Redmond DL, Matthews JB, Watkins C, Yaga R, Jones JT, Nath M, Knox DP.  2008.  Stage-specific gene expression in Teladorsagia circumcincta (Nematoda: Strongylida) infective larvae and early parasitic stages. International Journal for Parasitology. 38:829-838. Abstract
Brueggeman R, Druka A, Nirmala J, Cavileer T, Drader T, Rostoks N, Mirlohi A, Bennypaul H, Gill U, Kudrna D et al..  2008.  The stem rust resistance gene Rpg5 encodes a protein with nucleotide binding site, leucine-rich and protein kinase domains. Proceedings of the National Academy of Sciences, USA. 105:14970-14975. Abstract
Shillam LL, Hopkins DW, Badalucco L, Laudicina VA.  2008.  Structural diversity and enzyme activity of volcanic soils at different stages of development and response to experimental disturbance. Soil Biology & Biochemistry. 40:2182-2185. Abstract
Hammond JP, White PJ.  2008.  Sucrose transport in the phloem; integrating root responses to phosphorus starvation. Journal of Experimental Botany. 59:93-109. Abstract
Garc R, Ochoa V, Hinojosa MB, Carreira JA.  2008.  Suitability of enzyme activities for the monitoring of soil quality improvement in organic agricultural systems. Soil Biology & Biochemistry. 40:2137-2145. Abstract
2009
Scott A, Carter C, Brown KM, White V.  2009.  Seeing is not everything: Exploring the landscape experiences of different publics. Landscape and Urban Planning.. 34(4):397-424.
Ritz K, Black HIJ, Campbell CD, Harris J, Wood CM.  2009.  Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development. Ecological Indicators. 9(6):1212-1221.
Pakeman RJ, Nolan AJ.  2009.  Setting sustainable grazing levels for heather moorland: a multi-site analysis. Journal of Applied Ecology. 46(2):363-368.
Singh BK, Campbell CD, Sorenson SJ, Zhou J.  2009.  Soil genomics. Nature Reviews in Microbiology.. 7(10):756.
Singh BK, Tate K, Ross D, Dando J, Singh J, Thomas N, Millard P, Murrell JC.  2009.  Soil methane oxidation and methanotroph responses to afforestation of pastures with Pinus radiata stands of different ages. Soil Biology and Biochemistry.. 41:2196-2205.
McGregor BA, Kerven C, Toigonbaev S.  2009.  Sources of variation contributing to production and quality attributes of Kyrgyz cashmere in Osh and Naryn provinces: Implications for industry development. Small Ruminant Research. 84(1-3):89-99.
Robinson CH, Szaro TM, Izzo AD, Anderson IC, Parkin PI, Bruns TD.  2009.  Spatial distribution of fungal communities in a coastal grassland soil. Soil Biology and Biochemistry. 41(2):414-416.
van der Linde S, Alexander IJ, Anderson IC.  2009.  Spatial distribution of sporocarps of stipitate hydnoid fungi and their belowground mycelium. FEMS Microbiology Ecology. 69(3):344-352.
Lilly A, Ball B, McTaggart I, DeGroote J.  2009.  Spatial modelling of nitrous oxide emissions at the national scale by upscaling using soil, climate and land use information. Global Change Biology. 15:2321-2332.
Stutter MI, Lumsdon DG, Billett MF, Low D, Deeks LK.  2009.  Spatial variability in properties affecting organic horizon carbon storage in upland soils. Soil Science Society of America Journal.. 73(5):1724-1732.
Keith AM, van der Wal R, Brooker RW, Brooker GHR, Chapman SJ, Burslem DFRP.  2009.  Strong impacts of belowground tree inputs on soil nematode trophic composition. Soil Biology and Biochemistry. 41(6):1060-1065.
Crampton BG, Hein I, Berger DK.  2009.  Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
Andrews M, Maule HG, Hodge S, Cherrill A, Raven JA.  2009.  Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.
Lehrach WP, Husmeier D.  2009.  Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
Visser RGF, Bachem CWB, de Boer JM, Bryan GJ, Chakrabati SK, Feingold S, Gromadka R, van Ham RCHJ, Huang SW, Jacobs JME et al..  2009.  Sequencing the potato genome: Outline and first results to come from the elucidation of the sequence of the world's most important food crop. American Journal of Potato Research. 86:417-429.
Hammond JP, Broadley MR, White PJ, King GJ, Bowen HC, Hayden R, Meacham MC, Mead A, Overs T, Spracklen WP et al..  2009.  Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.
Maestre FT, Bowker M, Puche MD, Bowker M, Hinojosa MB, Mart I, Garc P, Castillo AP, Soliveres S, Luzuriaga AL et al..  2009.  Shrub encroachment can reverse desertification in semi-arid Mediterranean grasslands. Ecology Letters. 12:930-941. Abstract
Bradshaw JE, Titley M, Wilson RN.  2009.  Single seed descent as a breeding method for swedes (Brassica napus L. var. napobrassica Peterm). Euphytica. 169:387-401.
McKenzie BM, K S, MacKenzie K, Peth S, Horn R.  2009.  Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.
Garc R, Ochoa V, Vi B, Hinojosa MB, Pe R, Li G, Linares JC, Carreira JA.  2009.  Soil enzymes, nematode community and selected physico-chemical properties as soil quality indicators in organic and conventional olive oil farming: influence of seasonality and site features. Applied Soil Ecology. 41:305-314. Abstract
Hopkins DW, Waite IS, McNicol JW, Poulton PR, MacDonald AJ, O'Donnell AG.  2009.  Soil organic carbon contents in long-term experimental grassland plots in the UK (Palace Leas and Park Grass) have not changed consistently in recent decades. Global Change Biology. 15:1739-1754. Abstract
White PJ, Hammond JP.  2009.  The sources of phosphorus in the waters of Great Britain. Journal of Environmental Quality. 38:13-26. Abstract
Polechov J, Barton N, Marion G.  2009.  Species' range: adaptation in space and time. American Naturalist. 174:E186-E204.
Ki LP, Felber F, Flavell AJ, Guadagnuolo R, Guiatti D, Hauser TP, Olivieri AM, Scotti I, Syed NH, Vischi M et al..  2009.  Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.. Genetic Resources and Crop Evolution. 56:405-419.
Shi B-J, Symons RH, Palukaitis P.  2009.  Stability and competitiveness of interviral recombinant RNAs derived from a chimeric cucumovirus. Virus Research. 140:216-221. Abstract
Farmer N, Meier-Augenstein W, Lucy D.  2009.  Stable isotope analysis of white paints and likelihood ratios. Science and Justice. 49:114-119. Abstract
Neumann G, George TS, Plassard C.  2009.  Strategies and methods for studying the rhizosphere - the plant science toolbox. Plant and SoilPlant and Soil. 321:431-456.
Tyler A, Hunter PD, Carvalho L, Codd GA, Elliott JA, Ferguson CA, Hanley ND, Hopkins DW, Maberly SC, Mearns KJ et al..  2009.  Strategies for monitoring and managing mass populations of toxic cyanobacteria in recreational waters: A multi-interdisciplinary approach. Environmental Health. 8 Supplement 1:-S11.
Weaver J, Briscoe T, Hou M, Goodman C, Kata S, Ross HA, McDougall GJ, Stewart D, Riches A.  2009.  Strawberry polyphenols are equally cytotoxic to tumourigenic and normal human breast and prostate cell lines. International Journal of Oncology. 34:777-786.
Mess A, Squire GR, Perry JN, Angevin F, Gomez M, Townend P, Sausse C, Breckling B, Langrell S, Dzeroski S et al..  2009.  Sustainable introduction of GM crops into European agriculture: a summary report of the FP6 SIGMEA research project. Ol. 16:37-51.
2010
Woodward G, Dybkjaer JB, Olafsson JS, Gislason GM, Hannesdottir ER, Friberg N.  2010.  Sentinel systems on the razor's edge: effects of warming on Arctic geothermal stream ecosystems. Global Change Biology. 16(7):1979-1991.
Perez-Barberia FJ, Yearsley JM.  2010.  Sexual selection for fighting skills as a driver of sexual segregation in polygynous ungulates: an evolutionary model. Animal Behaviour. 80(4):745-755.
Castellazzi MS, Matthews J, Angevin F, Wood GA, Burgess PJ, Brown I, Conrad KF, Perry PN.  2010.  Simulation scenarios of spatio-temporal arrangement of crops at the landscape scale. Environmental Modelling and Software. 25(12):1881-1889.
Gotts NM, Polhill JG.  2010.  Size matters: large-scale replications of experiments with FEARLUS. Advances in Complex Systems. 13(4):453-467.
Poggio L, Gimona A, Brown I, Castellazzi MS.  2010.  Soil available water capacity interpolation and spatial uncertainty modelling at multiple geographical extents. Geoderma. 160(2):175-188.
Shibu ME, van Keulen H, Leffelaar PA, Aggarwal PK.  2010.  Soil carbon balance of rice-based cropping systems of the Indo-Gangetic Plains. Geoderma. 160:143-154.
Pickles BJ, Genney DR, Potts JM, Lennon JJ, Anderson IC, Alexander IJ.  2010.  Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186(3):755-768.
Nijnik M, Nijnik, M.; Mather A, Lundin L, Staszewski T, Postolache C.  2010.  Stakeholder attitudes to multi-functional forests in Europe. Forests, Trees and Livelihoods. 19(4):341-358.
Kerlin D, Thirgood, S.J.; Redpath S, Miller DR, Aebischer N, Smith A, Haydon D.  2010.  State dependent dynamics of cycles in red grouse abundance. Ecography. 33(5):896-905.
Moir HJ, Pasternack GB.  2010.  Substrate requirements of spawning Chinook salmon (Oncorhynchus tshawytscha) are dependent on local channel hydraulics. River Research and Applications. 26(4):456-468.
K A, Kuiper HA, Marvin HJP, Boon PE, Busk L, Cnudde FC, Cope S, Davies HV, Dreyer M, Frewer LJ et al..  2010.  The SAFE FOODS framework for improved risk analysis of foods. Food Control. 21:1566-1587.
Kuiper HA, Davies HV.  2010.  The SAFE FOODS risk analysis framework suitable for GMOs? A case study. Food Control. 21:1662-1676.
Cock PJA, Fields CJ, Goto N, Heuer ML, Rice PM.  2010.  The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research. 38:1767-1771.
Montero-Serrano JC, Palarea-Albaladejo J, Martin-Fern JA, Mart M, Guti JV.  2010.  Sedimentary chemofacies characterization by means of multivariate analysis. Sedimentary Geology. 228:218-228.
Broadley MR, Alcock J, Alford J, Cartwright P, Foot I, Fairweather-Tait SJ, Hart DJ, Hurst R, Knott P, McGrath SP et al..  2010.  Selenium biofortification of high-yielding winter wheat (Triticum aestivum L.) by liquid or granular Se fertilisation. Plant and Soil. 332:5-18.
McGavin WJ, MacFarlane SA.  2010.  Sequence similarities between Raspberry leaf mottle virus, Raspberry leaf spot virus and the closterovirus Raspberry mottle virus. Annals of Applied Biology. 156:439-448.
Broadley MR, O'Lochlainn S, Hammond JP, Bowen HC, Cakmak I, Eker S, Erdem H, King GJ, White PJ.  2010.  Shoot zinc (Zn) concentration varies widely within Brassica oleracea L. and is affected by soil Zn and phosphorus (P) levels. Journal of Horticultural Science & Biotechnology. 85:375-380.
Carr JP, Lewsey MG, Palukaitis P.  2010.  Signaling in induced resistance. Advances in Virus Research. 76:57-121.
Praveen S, Ramesh SV, Mishra AK, Koundal V, Palukaitis P.  2010.  Silencing potential of viral-derived RNAi constructs in Tomato leaf curl virus-AC4 gene suppression in tomato. Transgenic Research. 19:45-55.
Bingham IJ, Bengough AG, Rees RM.  2010.  Soil compaction - N interactions in barley: Root growth and tissue composition. Soil and Tillage Research. 106:241-246.
Stroud JL, Broadley MR, Foot I, Fairweather-Tait SJ, Hart DJ, Hurst R, Knott P, Mowat H, Norman K, Scott P et al..  2010.  Soil factors affecting selenium concentration in wheat grain and the fate and speciation of Se fertilisers applied to soil. Plant and Soil. 332:19-30.
Pickles BJ, Genney DR, Potts JM, Lennon JJ, Anderson IC, Alexander IJ.  2010.  Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186:755-768.
Rustenholz C, Hedley PE, Morris J, Choulet F, Feuillet C, Waugh R, Paux E.  2010.  Specific patterns of gene space organisation revealed in wheat by using the combination of barley and wheat genomic resources. BMC Genomics. 11:-714.
Hornyik C, Terzi LC, Simpson GG.  2010.  The Spen family protein FPA controls alternative cleavage and polyadenylation of RNA. Developmental Cell. 18:203-213.
Zhang X-S, Chase-Topping ME, McKendrick IJ, Savill NJ, Woolhouse MEJ.  2010.  Spread of E. coli O157 infection among Scottish cattle farms: Stochastic models and model selection. Epidemics. 2:11-20.
Hodgson JG, Sharafi M, Jalili A, Diaz S, Montserrat-Marti G, Palmer C, Cerabolini B, Pierce S, Hamzehee B, Asri Y et al..  2010.  Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
Tetzlaff D, Brewer MJ, Malcolm IA, Soulsby C.  2010.  Storm flow and baseflow response to reduced acid deposition - using Bayesian compositional analysis in hydrograph separation with changing end members. Hydrological Processes. 24:2300-2312.
Newton AC, Duncan JM, Augustin NH, Guy DC, Cooke DEL.  2010.  Survival, distribution and genetic variability of inoculum of the strawberry red core pathogen, Phytophthora fragariae var. fragariae, in soil. Plant Pathology. 59:472-479.
Iannetta PPM, Begg GS, Valentine TA, Wishart J.  2010.  Sustainable disease control using weeds as indicators: Capsella bursa pastoris and Tobacco Rattle Virus. Weed Research. 50:511-514.
Lewsey MG, Gonz I, Kalinina NO, Palukaitis P, Canto T, Carr JP.  2010.  Symptom induction and RNA silencing suppression by the cucumber mosaic virus 2b protein. Plant Signaling & Behaviour. 5:705-708.
2011
Luo S, Tai H, Zebarth B, Li XQ, Millard P, De Koeyer D, Xiong X.  2011.  Sample collection protocol effects on quantification of gene expression in potato leaf tissue. Plant Molecular Biology Reporter. 29:369-378.
Newton AC, Guy DC.  2011.  Scale and spatial structure effects on the outcome of barley cultivar mixture trials for disease control. Field Crops Research. 123:74-79.
Warren CR, McKee AJ.  2011.  The Scottish revolution? Evaluating the impacts of post devolution land reform Scottish Geographical Journal. 127:17-39.
Dawson JJC, Tetzlaff D, Speed M, Hrachowitz M, Soulsby C.  2011.  Seasonal controls on DOC dynamics in nested upland catchments in NE Scotland. Hydrological Processes. 25:1647-1658.
Salmela MJ, Cavers S, Wachowiak W, Cottrell JE, Iason GR, Ennos RA.  2011.  Seasonal patterns of photochemical capacity and spring phenology reveal genetic differentiation among native Scots pine (Pinus sylvetsris L.) populations in Scotland. Forest Ecology and Management. 262:1020-1029.
Chen YP, Hocking PM, Wang L, Povazay B, Prashar A, To CH, Erichsen JT, Feldkaemper M, Hofer B, Drexler W et al..  2011.  Selective breeding for susceptibility to myopia reveals a gene-environment interaction. Investigative Ophthalmology and Visual Science. 52:4003-4011.
Zhang Z, Rhind SM, Kerr C, Osprey M, Kyle C.  2011.  Selective pressured liquid extraction of estrogenic compounds in soil and analysis by gas chromatography - mass spectrometry. Analytica Chimica Acta. 685:29-35.
Hart DJ, Fairweather-Tait SJ, Broadley MR, Dickinson SJ, Foot I, Knott P, McGrath SP, Mowat H, Norman K, Scott PR et al..  2011.  Selenium concentration and speciation in biofortified flour and bread: Retention of selenium during grain biofortification, processing and production of Se-enriched food. Food Chemistry. 126:1771-1778.
Scott V, Kettle H, Merchant C.  2011.  Sensitivity analysis of an ocean carbon cycle model in the North Atlantic: An investigation of parameters affecting the air-sea CO2 flux, primary production and export of detritus. Ocean Science. 7:405-419.
Hagemann N, Prager K.  2011.  Shortcomings of political instruments for agricultural soil conservation. Berichte uber Landwirtschaft. 89:331-350.
Vetukuri RR, Tian ZD, Avrova AO, Savenkov EI, Dixelius C, Whisson SC.  2011.  Silencing of the PiAtvr3a effector-encoding gene from Phytophthora infestans by transcriptional fusion to a short interspersed element. Fungal Biology. 115:1225-1233.
Minet E, Goodhue R, Coxon CE, Kalin RM, Meier-Augenstein W.  2011.  Simplifying and improving the extraction of nitrate from freshwater for stable isotope analyses. Journal of Environmental Monitoring. 13:2062-2066.
Zhang Z, Ohiozebau E, Rhind SM.  2011.  Simultaneous extraction and clean-up of polybrominated diphenyl ethers and polychlorinated biphenyls from sheep liver tissue by selective pressurized liquid extraction and analysis by gas chromatography - mass spectrometry. Journal of Chromatography A. 1218:1203-1209.
Corby HDL, Smith DL, Sprent JI.  2011.  Size, structure and nitrogen content of seeds of Fabaceae in relation to nodulation. Botanical Journal of the Linnean Society. 167:251-280.
Prager K, Schuler J, Helming K, Zander P, Ratinger T, Hagedorn K.  2011.  Soil degradation, farming practices, institutions and policy responses: An analytical framework. Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies.. 22:32-46.
Powlson DS, Gregory PJ, Whalley WR, Quinton JN, Hopkins DW, Whitmore AP, Hirsch PR, Goulding KWT.  2011.  Soil management in relation to sustainable agriculture and ecosystem services. Food Policy. 36:S72-S87.
Krivtsov V, Griffiths BS, Liddell K, Garside A, Salmond R, Bezginova T, Thompson J.  2011.  Soil nitrogen availability is reflected in the bacterial pathway. Pedosphere. 21:26-30.
Powlson DS, Brookes PC, Whitmore AP, Goulding KWT, Hopkins DW.  2011.  Soil organic matters. European Journal of Soil Science. 62:1-4.
Yao H, Campbell CD, Qiao XR.  2011.  Soil pH controls nitrification and carbon substrate utilization more than urea or charcoal in some highly acidic soils. Biology and Fertility of Soils. 47:515-522.
Taylor MA, Fraser PD.  2011.  Solanesol: added value from solanaceous waste. Phytochemistry. 72:1323-1327.
Brewer MJ, Tetzlaff D, Malcolm IA, Soulsby C.  2011.  Source distribution modelling for end-member mixing in hydrology. Environmetrics. 22:921-932.
Ceccon C, Panzacchi P, Scandellari F, Prandi L, Ventura M, Russo B, Millard P, Tagliavini M.  2011.  Spatial and temporal effects of soil temperature and moisture and the relation to fine root density on root and soil respiration in a mature apple orchard. Plant and Soil. 342:195-206.
Polhill JG, Gimona A, Aspinall R.  2011.  Special issue: agent-based modelling of land use effects on ecosystem processes and services. Journal of Land Use Science. 6:75-81.
Andrivon D, Avendano-Corcoles J, Cameron AM, Carnegie SF, Cooke LR, Corbiere R, Detourne D, Dowley LJ, Evans D, Forisekova K et al..  2011.  Stability and variability of virulence of Phytophthora infestans assessed in a ring test across European laboratories. Plant Pathology. 60:556-565.
Squire GR, Breckling B, Pfeilstetter AD, Jorgensen RB, Lecomte J, Pivard S, Reuter H, Young MW.  2011.  Status of feral oilseed rape in Europe: its minor role as a GM impurity and its potential as a reservoir of transgene persistence. Environmental Science and Pollution Research. 18:111-115.
Giammaria V, Grandellis C, Bachmann S, Gargantini PR, Feingold SE, Bryan GJ, Ulloa RM.  2011.  StCDPK2 expression and activity reveal a highly responsive potato calcium-dependent protein kinase involved in light signalling. Planta. 233:593-609.
Rasmussen JJ, Baattrup-Pedersen A, Riis T, Friberg N.  2011.  Stream ecosystem properties and processes along a temperature gradient. Aquatic Ecology. 45:231-242.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.