Publications list
Filters: First Letter Of Title is T [Clear All Filters]
.
2005.
Thermal time - concepts and utility. Annals of Applied Biology. 146:1-14. Abstract
.
2005.
The tomato sequencing project, the first cornerstone of the international Solanaceae project (SOL). Comparative and Functional Genomics. 6:153-158. Abstract
.
2005.
Translocation of 15N indicates nitrogen recycling in the mat-forming lichen Cladonia portentosa. New Phytologist. 168:423-434. Abstract
.
2005.
Two grapevine viruses in an ornamental Vitis species from Scotland. Journal of Plant Pathology. 87:-76. Abstract
.
2005.
Two plant-viral movement proteins traffic in the endocytic recycling pathway. Plant Cell. 17:164-181. Abstract
.
2005.
Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.
.
2005.
A test for measuring individual variation in how far grazing animals will move away from a social group to feed. Applied Animal Behaviour Science. 98:89-99.
.
2006.
Testing five hypotheses of sexual segregation in an arctic ungulate. Journal of Animal Ecology. 75(2):485-496.
.
2006.
A theory of associating food types with their post-ingestive consequences. American Naturalist. 167(5):705-716.
.
2006.
To graze or not to graze? Sheep, voles, forestry and nature conservation in the British uplands Journal of Applied Ecology. 43(3):499-505.
.
2006.
.
2006.
Tracing N, K, Mg and Ca released from decomposing biomass to new tree growth. Part II: A model system simulating root decomposition on clearfell sites. Biomass and Bioenergy. 30(12):1060-1066.
.
2006.
Transhumance livestock production in the Northern Areas of Pakistan: nutritional inputs and productive outputs. Agriculture, Ecosystems and Environment. 117(2-3):195-204.
.
2006.
Translocation of N in the xylem of cherry and poplar during remobilization: scaling up to field-grown trees. Tree Physiology. 26:527-536.
.
2006.
Taxonomy of Longidorid nematodes and dichotomous keys for the identification of Xiphinema and Xiphidorus species recorded in Brazil. Arquivos Instituto Biologico. 73:131-141.
.
2006.
Three-dimensional microorganisation of the soil-root-microbe system. Microbial Ecology. 52:151-158. Abstract
.
2006.
Tillage-induced environmental conditions in soil and substrate limitation determine biogenic gas production. Soil Biology & Biochemistry. 38:2614-2628. Abstract
.
2006.
Tracheids in an early vascular plant: a tale of two branches. Botanical Journal of the Linnean Society. 150:115-130. Abstract
.
2006.
Trafficking arms: oomycete effectors enter host plant cells. Trends in Microbiology. 14:8-11. Abstract
.
2006.
.
2006.
Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract
.
2006.
Temperature and soil moisture effects on dissolved organic matter release from a moorland Podzol O horizon under field and controlled laboratory. European Journal of Soil Science. 58(5):1007-1016.
.
2007.
Temporal responses of propagule banks during ecological restoration in the UK. Restoration Ecology. 15(1):103-117.
.
2007.
Tissue nutrient concentrations in freshwater aquatic macrophytes: high inter-taxon differences and low phenotypic response to nutrient supply. Freshwater Biology. 52(22):2073-2086.
.
2007.
Towards a complete soil C and N cycle: incorporating the soil fauna. Ecology. 88:1611-1621.
.
2007.
Tradeoffs between income, biodiversity, and ecosystem functioning during tropical rainforest conversion and agroforestry intensification. Proceedings of the National Academy of Sciences of the United States of America. 104(12):4973-4978.
.
2007.
The transfer of 239/240Pu to cow milk. Journal of Environmental Radioactivity. 98(1-2):191-204.
.
2007.
The transfer of different forms of 35S to goat milk. Journal of Environmental Radioactivity. 98(1-2):177-190.
.
2007.
The transfer of radiocaesium to ewes through a breeding cycle - an illustration of the pitfalls of the transfer coefficient. Journal of Environmental Radioactivity. 98(1-2):24-35.
.
2007.
The transfer of radionuclides from saltmarsh vegetation to sheep tissues and milk. Journal of Environmental Radioactivity. 98(1-2):36-49.
.
2007.
Transient and asymptotic dynamics of reinforcement learning in games. Games and Economic Behavior. 61(2):259-276.
.
2007.
Two lowland stream riffles - linkages between physical habitats and macroinvertebrates across multiple spatial scales. Aquatic Ecology. 41(3):475-490.
.
2007.
The tagged microarray marker (TAM) method for high-throughput detection of single nucleotide and indel polymorphisms. Nature Protocols. 2:168-177.
.
2007.
Tansley Review. Zinc in plants. New Phytologist. 173:677-702. Abstract
.
2007.
.
2007.
Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: Evidence from FRAP. Addendum. Plant Signaling & Behaviour. 2:180-181. Abstract
.
2007.
TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract
.
2007.
Thermal imaging as a viable tool for monitoring plant stress. Journal International des Sciences de la Vigne et du Vin. 41:77-84.
.
2007.
Three-dimensional growth of bovine hoof as recorded by carbon stable isotope ratios. Rapid Communications in Mass Spectrometry. 21:3971-3976. Abstract
.
2007.
Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology. 8:333-341. Abstract
.
2007.
Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract
.
2007.
Tracking the sudden oak death pathogen. Molecular Ecology. 16:3735-3736.
.
2007.
.
2007.
Temporal patterns of litter production by vascular plants colonising cut-over peatlands. Wetlands. 28(1):245-250.
.
2008.
Testing seasonal and long-term controls of streamwater DOC using empirical and process-based models. The Science of the Total Environment. 407(1):698-707.
.
2008.
Testing the spatial applicability of the Johnson-Woodward method for estimating solar radiation from sunshine duration data. Agriculture and Forest Meteorology. 148(3):466-480.
.
2008.
.
2008.
Tissue nutrient concentrations in aquatic macrophytes: comparison across biophysical zones, surface water habitats and plant life forms. Chemistry and Ecology. 24(6):413-422.
.
2008.
.
2008.
Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere. Biology and Fertility of Soils. 44:897-901. Abstract
.
2008.
Tissue disruption activates a plant caspase-like protease with TATD cleavage specificity. Plant Stress. 2:89-95. Abstract
.
2008.
Tissue-dependent limited pleiotropy affects gene expression in barley. Plant Journal. 56:287-296.
.
2008.
Towards fruitful metabolomics: High throughput analyses of polyphenol composition in berries using direct infusion mass spectrometry. Journal of Chromatography B. 871:362-369. Abstract
.
2008.
.
2008.
Transpiration: how many functions? New Phytologist. 179:905-908. Abstract
.
2008.
Temporal dynamics of marginal steppic vegetation over a 26-year period of substantial environmental change. Journal of Vegetation Science. 20:299-310.
.
2009.
Through the eye of the needle: A review of isotope approaches to quantify processes mediating soil carbon balance. New Phytologist. 184:19-33.
.
2009.
Topographic impacts on wheat yields under climate change: two contrasted case studies in Europe. Theoretical and Applied Climatology. Published online.
.
2009.
Trace elements in recent groundwater of an artesian flow system and comparison with snow: enrichments, depletions, and chemical evolution of the water. Journal of Environmental Monitoring, 12, 208-217..
.
2009.
.
2009.
The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.
.
2009.
Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.
.
2009.
Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
.
2009.
Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
.
2009.
.
2009.
Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
.
2009.
.
2009.
Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
.
2009.
Transcriptional and metabolic profiles of Lolium perenne L. genotypes in response to a PEG induced water stress. Plant Biotechnology Journal. 7:719-732.
.
2009.
The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
.
2009.
Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract
.
2009.
Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
.
2009.
Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
.
2009.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.
.
2010.
Tenancy in Norwegian agriculture. Land Use Policy. 27(3):946-956.
.
2010.
Terricolous alpine lichens are sensitive to both load and concentration of applied nitrogen and have potential as bioindicators of nitrogen deposition. Environmental Pollution. 158(5):1296-1302.
.
2010.
The threatened plant intermediate wintergreen (Pyrola media Sw.) associates with a wide range of biotrophic fungi in native Scottish pine woods. Biodiversity and Conservation. 19(14):3963-3971.
.
2010.
Towards a mechanistic understanding of dispersal evolution in plants: conservation implications. Diversity and Distributions. 16(4):690-702.
.
2010.
Towards a more exact definition of the importance of competition - a reply to Freckleton et al. (2009). Journal of Ecology. 98(4):719-724.
.
2010.
Towards a simple dynamic process conceptualization in rainfall runoff models using multi-criteria calibration and tracers in temperate, upland catchments. Hydrological Processes.. 24(3):260-275.
.
2010.
Transit time distributions of a conceptual model: their characteristics and sensitivities. Hydrological Processes. 24(12):1719-1729.
.
2010.
Turnover of labile and recalcitrant soil carbon differ in response to nitrate and ammonium deposition in an ombrotrophic peatland. Global Change Biology. 16(8):2307-2321.
.
2010.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
.
2010.
Tablet - next generation sequence assembly visualization. Bioinformatics. 26:401-402.
.
2010.
Tobraviruses - plant pathogens and tools for biotechnology (Review). Molecular Plant Pathology. 11:577-583.
.
2010.
Towards an understanding of how RxLR-effector proteins are translocated from oomycetes into host cells. Fungal Genetics Reviews. 24:27-36.
.
2010.
Tracking the green invaders: advances in imaging virus infection in plants. Biochemical Journal. 430:21-37.
.
2010.
Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.
.
2010.
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
.
2010.
.
2011.
Target-specificity of feral pig baits under different conditions in a tropical rainforest. Wildlife Research. 38:370-378.
.
2011.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26:328-336.
.
2011.
Tecnicas composicionales para concentraciones geoquimicas por debajo del limite de deteccion. Boletin Instituto Geologico y Minero de Espana. 122:459-468.
.
2011.
Teladorsagia circumcincta: The transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro. Experimental Parasitology. 127:351-356.
.
2011.
Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.
.
2011.
The temporal structure of feeding behaviour. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology. 301:R378-R393.
.
2011.
Temporal variation in the sediment permeability of an intertidal sandflat. Marine Ecology Progress Series. 441:49-63.
.
2011.
Tensile fracture properties of seven tropical grass species at different phenological stages. Grass and Forage Science. 66:551-559.
.
2011.
Testing target-specific bait delivery for controlling feral pigs in a tropical rainforest. Ecological Management and Restoration. 12:226-229.
.
2011.
The three dimensional distribution of minerals in potato tubers. Annals of Botany. 107:681-691.
.
2011.
.
2011.
Toward a regional and world geography under a changed climate. Eurasian Geography and Economics. 52:1-11.
.
2011.
Towards a cross-sectoral analysis of land use decision-making in Scotland. Landscape and Urban Planning. 100:1-10.
.
2011.
Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry. Theoretical and Applied Genetics. 123:585-601.
.
2011.
Trait assembly in plant assemblages and its modulation by productivity and disturance. Oecologia. 167:209-218.
.
2011.
.
2011.
Transcriptome sequencing of an ecologically important graminivorous sawfly: a resource for marker development. Conservation Genetics Resources. 3:789-795.
.
2011.
Tree competition and defense against herbivores: currency matters when counting the cost. Tree Physiology. 31:579-581.
.
2011.
Turnover of recently assimilated carbon in arctic bryophytes. Oecologia. 167:325-337.
.
2011.
Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates. Nucleic Acids Research. 39:8869-8880.
.
2011.
Two year dynamics of foliage labelling in 8 year-old Pinus pinaster trees with 15N 26Mg and 42Ca - simulation of Ca transport using an upscaling approach. Annals of Forest Science. 68:169-178.
.
2011.
The Tarland Catchment Initiative and its effect on stream water quality and macroinvertebrate indices. Journal of Environmental Quality. 41:314-321.
.
2012.
Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment. New Phytologist. 196:101-109.
.
2012.
The TGB1 movement protein of potato virus X reorganises actin and endomembranes into the X--body, a viral replication factory. Plant Physiology. 158:1359-1370.
.
2012.
Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
.
2012.
Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:16969-16973.
.
2012.
The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485:635-641.
.
2012.
Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology. 13:614-629.
.
2012.
Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
.
2012.
Transcriptional response of Pseudomonas aeruginosa to a phosphate-deficient Lolium perenne rhizosphere. Plant and Soil. 359:25-44.
.
2012.
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Research. 22:1184-1195.
.
2012.
Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
.
2012.
Transparent soil for imaging the rhizosphere. PLoS ONE. 7:e44276.
.
2012.
Treatment with fungicides influences phytochemical quality of blackcurrant juice. Annals of Applied Biology. 160:86-96.
.
2012.
Triggering change: towards a conceptualisation of major change processes in farm decision-making. Journal of Environmental Management. 104:142-151.
.
2012.
.
2013.
A temporal dimension of household vulnerability in three rural communities in Lijiang, China. Human Ecology. Published online.
.
2013.
Three-way interactions between plants, microbes and insects. Functional Ecology. 27:567-573.
.
2013.
.
2013.
Top 10 plant parasitic nematodes in molecular plant pathology. Molecular Plant Pathology. 14:946-961.
.
2013.
Toward understanding the role of aphid effectors in plant infestation. Molecular Plant Microbe Interactions. 26:25-30.
.
2013.
Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology. 22:5271-5277.
.
2013.
Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA. PLoS Genetics. 9:e1003867.
.
2013.
.
2013.
.
2013.
.
2013.
.
2014.
.
2014.
.
2014.
Top-down control by Harmonia axyridis mitigates the impact of elevated atmospheric CO2 on a plant-aphid interaction. Agricultural and Forest Entomology. 16:350-358.
.
2014.
.
2014.
Tracking (poly)phenol components from raspberries in ileal fluid. Journal of Agricultural and Food Chemistry. 62:7631-7641.
.
2014.
A trade off between mlo resistance to powdery mildew and increased susceptibility of barley to a newly important disease, Ramularia leaf spot. Journal of Experimental Botany. 65:1025-1037.
.
2014.
.
2014.
The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biology and Evolution. 6:2181-2194.
.
2014.
Transformation of vanadinite (Pb5(VO4)3Cl) by fungi. Environmental Microbiology. Published online..
.
2014.
Transparent soil microcosms allow 3D spatial quantification of soil microbiological processes in vivo. Plant Signaling and Behavior. 9
.
2014.
The tropical peatland plantation-carbon assessment tool: estimating CO2 emissions from tropical peat soils under plantations. Mitigation and Adaptation Strategies for Global Change. 19:863-885.
.
2014.
tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species. PLoS ONE. 9:e102502.
.
2014.
Techniques for RNA in vivo imaging in plants. Journal of Microscopy. 258:1-5.
.
2015.
Technology for older adults: maximising personal and social interaction: exploring opportunities for eHealth to support the older rural population with chronic pain. Scottish Geographical Journal. 131:181-193.
.
2015.
.
2015.
The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.
.
2015.
Towards an understanding of the control of 'crumbly' fruit in red raspberry. SpringerPlus. 4:223.
.
2015.
Toxoplasma gondii coinfection with diseases and parasites in wild rabbits in Scotland. Parasitology. 142:1415-1421.
.
2015.
A trait-based approach to crop-weed interactions. European Journal of Agronomy. 70:22-32.
.
2015.
A transcriptional reference map of defence hormone responses in potato. Scientific Reports. 5
.
2015.
A transdisciplinary approach to the economic analysis of the European Water Framework Directive. Ecological Economics. 116:34-45.
.
2015.
Translocation tactics: a framework to support the IUCN guidelines for wildlife translocations and improve the quality of applied methods. Journal of Applied Ecology. 52:1598-1607.
.
2015.
Trophy hunters' willingness to pay for wildlife conservation and community benefits. Conservation Biology. 29:1111-1121.
.
2015.
A two-point method for determining the soil water characteristic of typical northern temperate boreal soils. Geoderma Regional. 5:71-76.
.
2015.
Tackling wicked environmental problems: The discourse and its influence on practice in Scotland. Landscape and Urban Planning. Published online..
.
2016.
Tackling wicked environmental problems: The discourse and its influence on practice in Scotland. Landscape and Urban Planning. 154:44-56.
.
2016.
Temperature effects on fish production across a natural thermal gradient. Global Change Biology. 22:3206-3220.
.
2016.
Temporal variability in domestic point source discharges and their associated impact on receiving waters. Science of the Total Environment. 571:1275-1283.
.
2016.
Terrestrial nitrogen cycling in earth system models revisited. New Phytologist. 210:1165-1168.
.
2016.
Testing the systemic induced resistance hypothesis with Austrian pine and Diplodia sapinea. Physiological and Molecular Plant Pathology. 94:118-125.
.
2016.
The topological viewshed; embedding topological pointers into digital terrain models to improve GIS capability for visual landscape analysis. International Journal of Digital Earth. 9
.
2016.
The topological viewshed; embedding topological pointers into digital terrain models to improve GIS capability for visual landscape analysis. International Journal of Digital Earth. 9:1185-1205.
.
2016.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. Published online..
.
2016.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. 132:210-233.
.
2016.
.
2016.
.
2016.
.
2016.
Tree species' influences on soil carbon dynamics revealed with natural abundance C-13 techniques. Plant and Soil. 400:285-296.
.
2016.
Temperature sensitivity of substrate-use efficiency can result from altered microbial physiology without change to community composition. Soil Biology and Biochemistry. 109:59-69.
.
2017.
Temporal fatty acid profiles of human decomposition fluid in soil. Organic Geochemistry. 111:26-33.
.
2017.
Testing scenarios to achieve workplace sustainability goals using backcasting nad agent-based modeling. Environment and Behavior. 49:1007-1037.
.
2017.
Testing the utility of structure-from-motion photogrammetry reconstructions using small unmanned aerial vehicles and ground photography to estimate the extent of upland soil erosion. Earth Surface Processes and Landforms. Published online..
.
2017.
Testing the utility of structure-from-motion photogrammetry reconstructions using small unmanned aerial vehicles and ground photography to estimate the extent of upland soil erosion. Earth Surface Processes and Landforms. 42:1860-1871.
.
2017.
TetraploidSNPMap: Software for linkage analysis and QTL mapping in autotetraploid populations using SNP dosage data. Journal of Heredity. 108:438-442.
.
2017.
Then and now: Examining older people’s engagement in outdoor recreation across the life course. Leisure Sciences. Published online..
.
2017.
.
2017.
A tool for cost-effectiveness analysis of field scale sediment-bound phosphorus mitigation measures and applications. Science of the Total Environment. 586:631-641.
.
2017.
Total global agricultural land footprint associated with UK food supply 1986-2011. Global Environmental Change. 43:72-81.
.
2017.
Towards the construction of a typology of management models of shooting opportunities in Scotland. Scottish Geographical Journal. Published online..
.
2017.
Trade-offs between indicators of performance and sustainability in breeding suckler beef herds. Journal of Agricultural Science. 155:156-170.
.
2017.
.
2017.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
.
2017.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
.
2017.
.
2017.
Trees, soils, and warthogs - distribution of services and disservices from reforestation areas in southern Ethiopia. Forest Policy and Economics. 84:112-119.
.
2017.
Trend analysis for integrated regional climate change impact assessments in the Lusatian river catchments (north-eastern Germany). Regional Environmental Change. 17:1751-1762.
.
2017.
TSIS: an R package to infer alternative splicing isoform switches for time-series data. Bioinformatics. 33:3308-3310.
.
2017.
A tale of two eras: Phytoplankton composition influenced by oceanic paleochemistry. Geobiology. 16:498-506.
.
2018.
.
2018.
.
2018.
The temperature sensitivity of soil organic matter decomposition is constrained by microbial access to substrates'. Soil Biology and Biochemistry. 116:333-339.
.
2018.