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In Press
Armstrong MR, Vossen J, Lim TY, Hutten RCB, Xu J, Strachan SM, Harrower B, Champouret N, Gilroy EM, Hein I.  In Press.  Tracking disease resistance deployment in potato breeding by enrichment sequencing. New Phytologist. Published online..
2022
Glushkevich A, Spechenkova N, Fesenko I, Knyazev A, Samarskaya V, O. Kalinina N, Taliansky M, Love A.  2022.  Transcriptomic reprogramming, alternative splicing and RNA methylation in potato (Solanum tuberosum L) plants in response to potato virus Y infection. Plants. 11
2021
Cohen JJ, Azarova V, Klöckner CA, Kollmann A, Löfström E, Pellegrini-Masini G, Polhill JG, Reichl J, Salt D.  2021.  Tackling the challenge of interdisciplinary energy research: A research toolkit. Energy Research and Social Sciences. 74:ArticleNo.101966.
Zhang Y, Zhang J, Chapman SJ, Yao H, Zheng N, Müller C.  2021.  Tea plantation affects soil nitrogen transformations in subtropical China. Journal of Soils and Sediments. 21:441-451.
Engbersen N, Brooker RW, Stefan L, Studer B, Schöb C.  2021.  Temporal differentiation of resource capture and biomass accumulation as a driver of yield increase in intercropping. Frontiers in Plant Science. 12:ArticleNo.668803.
Ceschi A, Sartori R, Dickert S, Scalco A, Tur EM, Tommasi F, Delfini K.  2021.  Testing a norm-based policy for waste management: an agent-based modeling simulation on nudging recycling behavior. Journal of Environmental Management. 294:ArticleNo.112938.
Bach LT, Tamsitt V, Gower J, Hurd CL, Raven JA, Boyd PW.  2021.  Testing the climate intervention potential of ocean afforestation using the Great Atlantic Sargassum Belt. Nature Communications. 12:ArticleNo.2556.
Bach LT, Tamsitt V, Gower J, Hurd CL, Raven JA, Boyd PW.  2021.  Testing the climate intervention potential of ocean afforestation using the Great Atlantic Sargassum Belt. Nature Communications. 12:ArticleNo.2556.
Kranse O, Beasley H, Adams S, Pires-daSilva A, Bell C, Lilley CJ, Urwin PE, Bird D, Miska E, Smant G et al..  2021.  Towards genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles. G3 Genes, Genomes, Genetics. 11:ArticleNo.jkaa058.
Gill N, Allsopp J, Burridge A, Fisher D, Griffiths M, Paszkiewicz N, Rotter R.  2021.  The tribunal atmosphere: On qualitative barriers to access to justice. Geoforum. 119:61-71.
2020
Zhang Y, Zhang J, Chapman SJ, Yao H, Zheng N, Müller C.  2020.  Tea plantation affects soil nitrogen transformations in subtropical China. Journal of Soils and Sediments..
Wu L, Qian L, Deng ZK, Zhou XL, Li BL, Lan SB, Yang L, Zhang ZL.  2020.  Temperature modulating sand-consolidating cyanobacterial biomass, nutrients removal and bacterial community dynamics in municipal wastewater. Bioresource Technology. 301:ArticleNo.122758.
Govigli VM, Alkhaled S, Arnesen T, Barlagne C, Bjerck M, Burlando C, Melnykovych M, Rodriguez Frenandez-Blanco C, Sfeir P, Gorriz Mifsud E.  2020.  Testing a framework to co-construct social innovation actions. Insights from seven marginalized rural areas. Sustainability. 12:ArticleNo.1441.
Holden NJ, Kredics L, Barak J.  2020.  Thematic issue on human pathogens in the environment: biology and risk factors. FEMS Microbiology Letters. 367:ArticleNo.fnaa068.
Ritson JP, Alderson DM, Robinson CH, Burkitt A, Heinemeyer A, Stimson AG, Gallego-Sala A, Harris A, Quillet A, Malik AA et al..  2020.  Towards a microbial process-based understanding of the resilience of peatland ecosystem service provisioning - a research agenda. Science of The Total Environment. 759:ArticleNo.143467.
Roodposhti MS, Hewitt RJ, Bryan BA.  2020.  Towards automatic calibration of neighbourhood influence in cellular automata land-use models. Computers Environment and Urban Systems. 79:ArticleNo.101416.
Orman-Ligeza B, Harwood W, Hedley PE, Hinchcliffe A, Macaulay M, Uauy C, Trafford K.  2020.  TRA1: A locus responsible for controlling agrobacterium-mediated transformability in barley. Frontiers in Plant Science. 11:ArticleNo.355.
Davis N, Jarvis A, Aitkenhead MJ, Polhill JG.  2020.  Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.
Kattge J, Bonisch G, Diaz S, Lavorel S, Prentice IC, Leadley P, Tautenhahn S, Werner GDA, Pakeman RJ, White PJ et al..  2020.  TRY plant trait database - enhanced coverage and open access. Global Change Biology. 26:119-188.
2019
Brennan GL, Potter C, de Vere N, Griffith GW, Skjøth CA, Osborne NJ, Wheeler BW, McInnes RN, Clewlow Y, Barber A et al..  2019.  Temperate airborne grass pollen defined by spatio-temporal shifts in community composition. Nature Ecology and Evolution. 3:750-754.
Colley K, Currie M, Irvine KN.  2019.  Then and now: Examining older people’s engagement in outdoor recreation across the life course. Leisure Sciences. 41:186-202.
Dello Jacovo E, Valentine TA, Maluk M, Toorop P, Lopez del Egido L, Frachon N, Kenicer G, Park L, Goff M, Ferro VA et al..  2019.  Towards a characterisation of the wild legume bitter vetch (Lathyrus linifolius L. (Reichard) Bässler): heteromorphic seed germination, root nodule structure and N-fixing rhizobial symbionts. Plant Biology.. 2:523-532.
Secco L, Pisani E, Da Re R, Rogelja T, Burlando C, Vicentini K, Pettenella D, Masiero M, Miller DR, Nijnik M.  2019.  Towards a method of evaluating social innovation in forest-dependent communities: Firsy suggestions from a a science-stakeholder collaboration. Forest Policy and Economics. 104:9-22.
Arts K, Macleod CJA, Ioris AAR, Han XW, Sripada S, Braga JF, Maffey G, Jekjantuk N, Zeng C, van der Wal R.  2019.  Towards more effective online environmental information provision through tailored natural language generation: Profiles of Scottish river user groups and an evaluative online experiment. Science of the Total Environment. 673:643-655.
Pont C, Leroy T, Seidel M, Tondelli A, Duchemin W, Armisen D, Lang D, Bustos-Korts D, Goue N, Balfourier F et al..  2019.  Tracing the ancestry of modern bread wheats. Nature Genetics. 51:905-911.
Armstrong MR, Vossen J, Lim TY, Hutten RCB, Xu JF, Strachan SM, Harrower B, Champouret N, Gilroy EM, Hein I.  2019.  Tracking disease resistance deployment in potato breeding by enrichment sequencing. Plant Biotechnology Journal. 17:540-549.
Manning AD, Evans MJ, Banks SC, Batson WG, Belton E, Crisp HA, Fletcher DB, Gordon IJ, Grarock K, Munro N et al..  2019.  Transition to density dependence in a reintroduced ecosystem engineer. Biodiversity and Conservation. 28:3803-3830.
Squire GR, Quesada N, Begg GS, Iannetta PPM.  2019.  Transitions to greater legume inclusion in cropland: defining opportunities and estimating benefits for the nitrogen economy. Food and Energy Security. 8:ArticleNo.e00175.
Craig T, Polhill JG, Colley K, Carrus G, Maricchiolo F, Bonaiuto M, Bonnes M, Dumitru A, Mira RG.  2019.  Transmission of pro-environmental norms in large organizations. Sustainable Production and Consumption. 19:25-32.
Smith J, Nayak D, Albanito F, Balana B, Black HIJ, Boke S, Brand A, Byg A, Dinato M, Habte M et al..  2019.  Treatment of organic resources before soil incorporation in semi-arid regions improves resilience to El Nino, and increases crop production and economic returns. Environmental Research Letters. 14:ArticleNo.085004.
Blöschl G, Bierkens MFP, Chambel A, Cudennec C, Destouni G, Fiori A, Kirchner JW, McDonnell J, Savenije HHG, Sivapalan M et al..  2019.  Twenty three unsolved problems in hydrology (UPH) - a community perspective. Hydrological Sciences Journal.. 64:1141-1158.
2018
Giordano M, Olivieri C, Ratti S, Norici A, Raven JA, Knoll AH.  2018.  A tale of two eras: Phytoplankton composition influenced by oceanic paleochemistry. Geobiology. 16:498-506.
Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel HM, Glassman SI, Hirooka Y et al..  2018.  Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys. 28:65-82.
Nilsson RH, Taylor AFS, Adams RI, Baschien C, Bengtsson-Palme J, Cangren P, Coleine C, Daniel HM, Glassman SI, Hirooka Y et al..  2018.  Taxonomic annotation of public fungal ITS sequences from the built environment - a report from an April 10-11, 2017 workshop (Aberdeen, UK). MycoKeys. 28:65-82.
Moinet GYK, Hunt JE, Kirschbaum MUF, Morcom CP, Midwood AJ, Millard P.  2018.  The temperature sensitivity of soil organic matter decomposition is constrained by microbial access to substrates'. Soil Biology and Biochemistry. 116:333-339.
Schofield EJ, Rowntree JK, Paterson E, Brooker RW.  2018.  Temporal dynamism of resource capture: a missing factor in ecology? Trends in Ecology and Evolution. 33:277-286.
Dessi P, Porca E, Waters NR, Lakaniemi AM, Collins G, Lens PNL.  2018.  Thermophilic versus mesophilic dark fermentation in xylose-fed fluidised bed reactors: Biohydrogen production and active microbial community. International Journal of Hydrogen Energy. 43:5473-5485.
Skelsey P, Humphris SN, Campbell EJ, Toth IK.  2018.  Threat of establishment of non-indigenous potato blackleg and tuber soft rot pathogens in Great Britain under climate change. PLoS One. 13:ArticleNo.e0205711.
Pinker A.  2018.  Tinkering with turbines: ethics and energy decentralisation in Scotland. Anthropological Quarterly. 91:709-748.
Brooker RW, Brewer M, Britton AJ, Eastwood AJ, Ellis C, Gimona A, Poggio L, Genney DR.  2018.  Tiny niches and translocations: the challenge of identifying suitable recipient sites for small and immobile species. Journal of Applied Ecology. 55:621-630.
Ge J, Polhill JG, Craig TP.  2018.  Too much of a good thing? Using a spatial agent-based model of transport to evaluate workplace sharing programs in Aberdeen Journal of Transport Geography. 69:83-97.
Glendell M, Jones R, Dungait JAJ, Meusburger K, Schwendel AC, Barclay R, Barker S, Haley S, Quine TA, Meersmans J.  2018.  Tracing of particulate organic C sources across the terrestrial-aquatic continuum, a case study at the catchment scale (Carminowe Creek, South West England). Science of the Total Environment. 616-617:1077-1088.
Jarret DA, Morris J, Cullen DW, Gordon SL, Verrall SR, Milne L, Hedley PE, Allwood JW, Brennan RM, Hancock RD.  2018.  A transcript and metabolite atlas of blackcurrant fruit development highlights hormonal regulation and reveals the role of key transcription factors. Frontiers in Plant Science. 9:ArticleNo.1235.
Langan C, Farmer J, Rivington M, Smith J.  2018.  Tropical wetland ecosystem service assessments in East Africa; A review of approaches and challenges. Environmental Modelling and Software. 102:260-273.
Shortall O, Sutherland LA, Ruston A, Kaler J.  2018.  True cowmen and commercial farmers: Exploring vets’ and dairy farmers’ contrasting views of "good farming" in relation to biosecurity. Sociologia Ruralis. 58:583-603.
Wubs ERJ, Woodin SJ, Stutter MI, Wipf S, Sommerkorn M, van der Wal R.  2018.  Two decades of altered snow cover does not affect soil microbial ability to catabolize carbon compounds in an oceanic alpine heath. Soil Biology and Biochemistry. 124:101-104.
Guiomar N, Godinho S, Pinto-Correia T, Almeida M, Bartolini F, Bezak P, Biro M, Bjorkhaug H, Bojnec S, Brunori G et al..  2018.  Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
Guiomar N, Godinho S, Pinto-Correia T, Almeida M, Bartolini F, Bezak P, Biro M, Bjorkhaug H, Bojnec S, Brunori G et al..  2018.  Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
2017
Bölscher T, Paterson E, Freitag T, Thornton B, Herrmann AM.  2017.  Temperature sensitivity of substrate-use efficiency can result from altered microbial physiology without change to community composition. Soil Biology and Biochemistry. 109:59-69.
von der Luhe B, Fiedler S, Mayes RW, Dawson LA.  2017.  Temporal fatty acid profiles of human decomposition fluid in soil. Organic Geochemistry. 111:26-33.
Garcia-Mira R, Dumitru A, Alonso-Betanzos A, Sánchez-Maroño N, Fontenla-Romero O, Craig T, Polhill JG.  2017.  Testing scenarios to achieve workplace sustainability goals using backcasting nad agent-based modeling. Environment and Behavior. 49:1007-1037.
Glendell M, McShane G, Farrow L, James MR, Quinton J, Anderson K, Evans M, Benaud P, Rawlins B, Morgan D et al..  2017.  Testing the utility of structure-from-motion photogrammetry reconstructions using small unmanned aerial vehicles and ground photography to estimate the extent of upland soil erosion. Earth Surface Processes and Landforms. Published online..
Glendell M, McShane G, Farrow L, James MR, Quinton J, Anderson K, Evans M, Benaud P, Rawlins B, Morgan D et al..  2017.  Testing the utility of structure-from-motion photogrammetry reconstructions using small unmanned aerial vehicles and ground photography to estimate the extent of upland soil erosion. Earth Surface Processes and Landforms. 42:1860-1871.
Hackett CA, Boskamp B, Vogogias A, Preedy KF, Milne I.  2017.  TetraploidSNPMap: Software for linkage analysis and QTL mapping in autotetraploid populations using SNP dosage data. Journal of Heredity. 108:438-442.
Colley K, Currie M, Irvine KN.  2017.  Then and now: Examining older people’s engagement in outdoor recreation across the life course. Leisure Sciences. Published online..
Vinten AJA, Sample J, Ibiyemi A, Abdul-Salam Y, Stutter MI.  2017.  A tool for cost-effectiveness analysis of field scale sediment-bound phosphorus mitigation measures and applications. Science of the Total Environment. 586:631-641.
de Ruiter HR, Macdiarmid JI, Matthews RB, Kastner T, Lynd LR, Smith P.  2017.  Total global agricultural land footprint associated with UK food supply 1986-2011. Global Environmental Change. 43:72-81.
Mustin K, Newey S, Slee B.  2017.  Towards the construction of a typology of management models of shooting opportunities in Scotland. Scottish Geographical Journal. Published online..
Ahmadi BV, Nath M, Hyslop JJ, Morgan CA, Stott AW.  2017.  Trade-offs between indicators of performance and sustainability in breeding suckler beef herds. Journal of Agricultural Science. 155:156-170.
Danchin EGJ, Perfus-Barbeoch L, Rancurel C, Thorpe P, Da Rocha M, Bajew S, Neilson R, Sokolova E, Dasilva C, Guy J et al..  2017.  The transcriptomes of xiphinema index and longidorus elongatus suggest independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes. Genes. 8:ArticleNo.287.
Fazey I, Moug P, Allen S, Beckman K, Blackwood D, Bonaventura M, Burnett K, Danson M, Fanconer R, Gagnon A et al..  2017.  Transformation in a changing climate: a research agenda. Climate and Development. Published online..
Fazey I, Moug P, Allen S, Beckman K, Blackwood D, Bonaventura M, Burnett K, Danson M, Fanconer R, Gagnon A et al..  2017.  Transformation in a changing climate: a research agenda. Climate and Development. Published online..
Byg A, Novo P, Dinato M, Moges A, Tefera T, Balana B, Woldeamanual T, Black HIJ.  2017.  Trees, soils, and warthogs - distribution of services and disservices from reforestation areas in southern Ethiopia. Forest Policy and Economics. 84:112-119.
Gädeke A, Pohle I, Koch H, Grünewald U.  2017.  Trend analysis for integrated regional climate change impact assessments in the Lusatian river catchments (north-eastern Germany). Regional Environmental Change. 17:1751-1762.
Guo WB, Calixto CPG, Brown JWS, Zhang RX.  2017.  TSIS: an R package to infer alternative splicing isoform switches for time-series data. Bioinformatics. 33:3308-3310.
2016
Duckett D, Feliciano D, Martin-Ortega J, Munoz-Rojas J.  2016.  Tackling wicked environmental problems: The discourse and its influence on practice in Scotland. Landscape and Urban Planning. Published online..
Duckett D, Feliciano D, Martin-Ortega J, Munoz-Rojas J.  2016.  Tackling wicked environmental problems: The discourse and its influence on practice in Scotland. Landscape and Urban Planning. 154:44-56.
O'Gorman EJ, Olafsson OP, Demars BOL, Friberg N, Gudbergsson G, Hannesdottir ER, Jackson MC, Johansson LS, McLaughlin OB, Olafsson JS et al..  2016.  Temperature effects on fish production across a natural thermal gradient. Global Change Biology. 22:3206-3220.
Richards S, Withers PJA, Paterson E, McRoberts CW, Stutter MI.  2016.  Temporal variability in domestic point source discharges and their associated impact on receiving waters. Science of the Total Environment. 571:1275-1283.
Stocker BD, Prentice IC, Cornell SE, Davies-Barnard T, Finzi AC, Franklin O, Janssens I, Larmola T, Manzoni S, Nasholm T et al..  2016.  Terrestrial nitrogen cycling in earth system models revisited. New Phytologist. 210:1165-1168.
Sherwood P, Bonello P.  2016.  Testing the systemic induced resistance hypothesis with Austrian pine and Diplodia sapinea. Physiological and Molecular Plant Pathology. 94:118-125.
Sang N, Gold C, Miller DR.  2016.  The topological viewshed; embedding topological pointers into digital terrain models to improve GIS capability for visual landscape analysis. International Journal of Digital Earth. 9:1185-1205.
Creaney R, Niewiamdomski P.  2016.  Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. Published online..
Creaney R, Niewiamdomski P.  2016.  Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. 132:210-233.
Basso B, Giola P, Dumont B, Migliorati MD, Cammarano D, Pruneddu G, Giunta F.  2016.  Tradeoffs between maize silage yield and nitrate leaching in a Mediterranean nitrate-vulnerable zone under current and projected climate scenarios. PLoS ONE. 11:e0146360.
Tsai IJ, Tanaka R, Kanzaki N, Akiba M, Yokoi T, Espada M, Jones JT, Kikuchi T.  2016.  Transcriptional and morphological changes in the transition from mycetophagous to phytophagous phase in the plant-parasitic nematode Bursaphelenchus xylophilus. Molecular Plant Pathology. 17:77-83.
Jager NW, Challies E, Kochskämper E, Newig J, Benson D, Blackstock KL, Collins K, Ernst A, Evers M, Feichtinger J et al..  2016.  Transforming European water governance? EU water framework directive implementation in 13 member states Water. :ArticleNo.156.
Snell HSK, Robinson D, Midwood AJ.  2016.  Tree species' influences on soil carbon dynamics revealed with natural abundance C-13 techniques. Plant and Soil. 400:285-296.
2015
Tilsner J.  2015.  Techniques for RNA in vivo imaging in plants. Journal of Microscopy. 258:1-5.
Pirttioja N, Carter TR, Fronzek S, Bindi M, Hoffmann H, Palosuo T, Ruiz-Ramos M, Tao F, Trnka M, Acutis M et al..  2015.  Temperature and precipitation effects on wheat yield across a European transect: a crop model ensemble analysis using impact response surfaces. Climate Research. 65:87-105.
Kamoun S, Furzer O, Jones JDG, Judelson HS, Ali GS, Dalio RJD, Roy SG, Schena L, Zambounis A, Panabieres F et al..  2015.  The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.
Graham J, Smith K, McCallum S, Hedley PE, Cullen DW, Dolan A, Milne L, McNicol JW, Hackett CA.  2015.  Towards an understanding of the control of 'crumbly' fruit in red raspberry. SpringerPlus. 4:223.
Mason S, Dubey JP, Smith JE, Boag B.  2015.  Toxoplasma gondii coinfection with diseases and parasites in wild rabbits in Scotland. Parasitology. 142:1415-1421.
Pakeman RJ, Karley AJ, Newton AC, Morcillo L, Brooker RW, Schob C.  2015.  A trait-based approach to crop-weed interactions. European Journal of Agronomy. 70:22-32.
Wiesel L, Davis JL, Milne L, Fernandez VR, Herold MB, Williams JM, Morris J, Hedley PE, Harrower B, Newton AC et al..  2015.  A transcriptional reference map of defence hormone responses in potato. Scientific Reports. 5
Martin-Ortega J, Perni A, Jackson-Blake L, Balana BB, Dunn SM, McKee A, Helliwell RC, Psaltopoulos D, Skuras D, Cooksley S et al..  2015.  A transdisciplinary approach to the economic analysis of the European Water Framework Directive. Ecological Economics. 116:34-45.
Batson WG, Gordon IG, Fletcher DB, Manning AD.  2015.  Translocation tactics: a framework to support the IUCN guidelines for wildlife translocations and improve the quality of applied methods. Journal of Applied Ecology. 52:1598-1607.
Fischer A, Weldesemaet YT, Czajkowski M, Tadie D, Hanley N.  2015.  Trophy hunters' willingness to pay for wildlife conservation and community benefits. Conservation Biology. 29:1111-1121.
2014
Herwig A, Campbell G, Mayer CD, Boelen A, Anderson RA, Ross AW, Mercer JG, Barrett P.  2014.  A thyroid hormone challenge in hypothyroid rats identifies T3 regulated genes in the hypothalamus and in models with altered energy balance and glucose homeostasis. Thyroid. 24:1575-1593.
Hold GL, Berry S, Saunders KA, Drew J, Mayer C, Brookes H, Gay NJ, El-Omar EM, Bryant CE.  2014.  The TLR4 D299G and T399I SNPs are constitutively active to up-regulate expression of Trif-dependent genes. PLoS ONE. 9:e111460.
Hentley WT, Hails RS, Johnson SN, Jones TH, Vanbergen AJ.  2014.  Top-down control by Harmonia axyridis mitigates the impact of elevated atmospheric CO2 on a plant-aphid interaction. Agricultural and Forest Entomology. 16:350-358.
Tomkins JL, Aungier J, Hazel W, Gilbert L.  2014.  Towards an evolutionary understanding of host questing behaviour in the tick lxodes ricinus. PLoS ONE. 9:e110028.
McDougall GJ, Conner S, Pereira-Caro G, Gonzalez-Barrio R, Brown EM, Verrall S, Stewart D, Moffet T, Ibars M, Lawther R et al..  2014.  Tracking (poly)phenol components from raspberries in ileal fluid. Journal of Agricultural and Food Chemistry. 62:7631-7641.
McGrann GRD, Stavrinides A, Russell J, Corbitt MM, Booth A, Chartrain L, Thomas WTB, Brown JKM.  2014.  A trade off between mlo resistance to powdery mildew and increased susceptibility of barley to a newly important disease, Ramularia leaf spot. Journal of Experimental Botany. 65:1025-1037.
Elliott RM, de Roos B, Duthie SJ, Bouwman FG, Rubio-Aliaga I, Crosley LK, Mayer C, Polley AC, Heim C, Coort SL et al..  2014.  Transcriptome analysis of peripheral blood mononuclear cells in human subjects following a 36 h fast provides evidence of effects on genes regulating inflammation, apoptosis and energy metabolism. Genes and Nutrition. 9:ArticleNo.432.
Eves-van den Akker S, Lilley CJ, Danchin EGJ, Rancurel C, Cock PJA, Urwin PE, Jones JT.  2014.  The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biology and Evolution. 6:2181-2194.
Ceci A, Rhee YJ, Kierans M, Hillier S, Pendlowski H, Gray N, Persiani AM, Gadd GM.  2014.  Transformation of vanadinite (Pb5(VO4)3Cl) by fungi. Environmental Microbiology. Published online..
Downie H, Valentine TA, Otten W, Spiers AJ, Dupuy LX.  2014.  Transparent soil microcosms allow 3D spatial quantification of soil microbiological processes in vivo. Plant Signaling and Behavior. 9
Farmer J, Matthews RB, Smith P, Smith JU.  2014.  The tropical peatland plantation-carbon assessment tool: estimating CO2 emissions from tropical peat soils under plantations. Mitigation and Adaptation Strategies for Global Change. 19:863-885.
Russell JR, Hedley PE, Cardle L, Dancey S, Morris J, Booth A, Odee D, Mwaura L, Omondi W, Angaine P et al..  2014.  tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species. PLoS ONE. 9:e102502.
2013
Zheng Y, Byg A, Thorsen BJ, Strange N.  2013.  A temporal dimension of household vulnerability in three rural communities in Lijiang, China. Human Ecology. Published online.
Biere A, Bennett AE.  2013.  Three-way interactions between plants, microbes and insects. Functional Ecology. 27:567-573.
Dresboll DB, Thorup-Kristensen K, McKenzie BM, Dupuy LX, Bengough AG.  2013.  Timelapse scanning reveals spatial variation in tomato (Solanum lycopersicum L.) root elongation rates during partial waterlogging. Plant and Soil. 369:467-477.
Jones JT, Haegeman A, Danchin EGJ, Gaur HS, Helder J, Jones MGK, Kikuchi T, Manzanilla-Lopez R, Palomares-Rius JE, Wesemael WML et al..  2013.  Top 10 plant parasitic nematodes in molecular plant pathology. Molecular Plant Pathology. 14:946-961.
Rodriguez PA, Bos JIB.  2013.  Toward understanding the role of aphid effectors in plant infestation. Molecular Plant Microbe Interactions. 26:25-30.
Koljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AFS, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM et al..  2013.  Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology. 22:5271-5277.
Duc C, Sherstnev A, Cole C, Barton GJ, Simpson GG.  2013.  Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA. PLoS Genetics. 9:e1003867.
Wells B, Innocent GT, Eckersall PD, McCulloch E, Nisbet AJ, Burgess STG.  2013.  Two major ruminant acute phase proteins, haptoglobin and serum amyloid A, as serum biomarkers during active sheep scab infestation. Veterinary Research. 44:103.
Mosher S, Seybold H, Rodriguez PA, Stahl M, Davies KA, Davaratne S, Morillo SA, Wierzba M, Favery B, Keller H et al..  2013.  The tyrosine-sulfated peptide receptors PSKR1 and PST1R modify the immunity of Arabidopsis to biotrophic and necrotrophic pathogens in an antagonistic manner. The Plant Journal. 73:469-482.
2012
Bergfur J, Demars BOL, Stutter MI, Langan SJ, Friberg N.  2012.  The Tarland Catchment Initiative and its effect on stream water quality and macroinvertebrate indices. Journal of Environmental Quality. 41:314-321.
White PJ, Broadley MR, Thompson JA, McNicol JW, Crawley MJ, Poulton PR, Johnston AE.  2012.  Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment. New Phytologist. 196:101-109.
Tilsner J, Linnik O, Wright KM, Bell K, Roberts AG, Lacomme C, Santa Cruz S, Oparka KJ.  2012.  The TGB1 movement protein of potato virus X reorganises actin and endomembranes into the X--body, a viral replication factory. Plant Physiology. 158:1359-1370.
Clemente MR, Bustos-Sanmamed P, Loscos J, James EK, Perez-Rontome C, Navascues J, Gay M, Becana M.  2012.  Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
Dai F, Nevo E, Wu DZ, Comadran J, Zhou MX, Qiu L, Chen ZH, Beiles A, Chen GX, Zhang GP.  2012.  Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:16969-16973.
Sato S, Tabata S, Hirakawa H, Asamizu E, Shirasawa K, Isobe S, Bryan G, et al..  2012.  The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485:635-641.
Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow M, Verdier V, Beer SV, Machado MA et al..  2012.  Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology. 13:614-629.
Halliday AM, Lainson FA, Yaga R, Inglis NF, Bridgett S, Nath M, Knox DP.  2012.  Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
Zysko A, Sanguin H, Hayes A, Wardleworth L, Zeef L, Sim A, Paterson E, Singh BK, Kertesz MA.  2012.  Transcriptional response of Pseudomonas aeruginosa to a phosphate-deficient Lolium perenne rhizosphere. Plant and Soil. 359:25-44.
Marquez Y, Brown JWS, Simpson CG, Barta A, Kalyna M.  2012.  Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Research. 22:1184-1195.
Podevin N, Devos Y, Davies HV, Nielsen KM.  2012.  Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
Downie H, Holden N, Otten W, Spiers AJ, Valentine TA, Dupuy LX.  2012.  Transparent soil for imaging the rhizosphere. PLoS ONE. 7:e44276.
Nwankno AJ, Gordon SL, Verrall SR, Brennan RM, Hancock RD.  2012.  Treatment with fungicides influences phytochemical quality of blackcurrant juice. Annals of Applied Biology. 160:86-96.
Sutherland LA, Burton RJF, Ingram J, Blackstock KL, Slee B, Gotts N.  2012.  Triggering change: towards a conceptualisation of major change processes in farm decision-making. Journal of Environmental Management. 104:142-151.
2011
O' Lochlainn SE, Bowen HC, Fray RG, Hammond JP, King GJ, White PJ, Graham NS, Broadley MR.  2011.  Tandem quadruplication of HMA4 in the zinc (Zn) and cadmium (Cd) hyperaccumulator Noccaea caerulescens. PLoS ONE. 6:e17814.
Bengsen AJ, Leung LKP, Lapidge SJ, Gordon IJ.  2011.  Target-specificity of feral pig baits under different conditions in a tropical rainforest. Wildlife Research. 38:370-378.
Alexandrov GA, Ames D, Aumann C, Bellocchi G, Bruen M, Crout N, Erechtchoukova M, Hildebrandt A, Hoffman F, Jackisch C et al..  2011.  Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26:328-336.
Martin-Fernandez JA, Palarea-Albaladejo J, Barcelo-Vidal C.  2011.  Tecnicas composicionales para concentraciones geoquimicas por debajo del limite de deteccion. Boletin Instituto Geologico y Minero de Espana. 122:459-468.
Dicker AJ, Nath M, Yaga R, Nisbet AJ, Lainson FA, Gilleard JS, Skuce PJ.  2011.  Teladorsagia circumcincta: The transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro. Experimental Parasitology. 127:351-356.
Demars BOL, Manson JR, Olafsson JS, Gislason GM, Gudmundsdottir R, Woodward G, Reiss J, Pichler D, Rasmussen JJ, Friberg N.  2011.  Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.
Tolkamp BJ, Allcroft DJ, Barrio JP, Bley TAG, Howie JA, Jacobsen TB, Morgan CA, Schweitzer DPN, Wilkinson S, Yeates MP et al..  2011.  The temporal structure of feeding behaviour. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology. 301:R378-R393.
Zetsche E, Paterson DM, Lumsdon DG, Witte U.  2011.  Temporal variation in the sediment permeability of an intertidal sandflat. Marine Ecology Progress Series. 441:49-63.
Jacobs AAA, Scheper JA, Benvenutti MA, Gordon IJ, Poppi DP, Elgersma A.  2011.  Tensile fracture properties of seven tropical grass species at different phenological stages. Grass and Forage Science. 66:551-559.
Bengsen AJ, Leung L, Lapidge SJ, Gordon IJ.  2011.  Testing target-specific bait delivery for controlling feral pigs in a tropical rainforest. Ecological Management and Restoration. 12:226-229.
Subramanian NK, White PJ, Broadley MR, Ramsay G.  2011.  The three dimensional distribution of minerals in potato tubers. Annals of Botany. 107:681-691.
Aspinall RJ.  2011.  Toward a regional and world geography under a changed climate. Eurasian Geography and Economics. 52:1-11.
Sutherland LA, Barnes A, McCrum G, Blackstock KL, Toma L.  2011.  Towards a cross-sectoral analysis of land use decision-making in Scotland. Landscape and Urban Planning. 100:1-10.
Graham J, Hackett CA, Smith K, Woodhead M, MacKenzie K, Tierney I, Cooke DEL, Bayer MM, Jennings N.  2011.  Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry. Theoretical and Applied Genetics. 123:585-601.
Pakeman RJ, Lennon JJ, Brooker RW.  2011.  Trait assembly in plant assemblages and its modulation by productivity and disturance. Oecologia. 167:209-218.
Massa AN, Childs KL, Lin HN, Bryan GJ, Giuliano G, Buell CR.  2011.  The transcriptome of the reference potato genome Solanum tuberosum group phureja clone DM1-3 516R44. PLoS ONE. 6:e26801.
Cook N, Aziz N, Hedley PE, Morris J, Milne L, Karley AJ, Hubbard SF, Russell JR.  2011.  Transcriptome sequencing of an ecologically important graminivorous sawfly: a resource for marker development. Conservation Genetics Resources. 3:789-795.
Millard P, Way D.  2011.  Tree competition and defense against herbivores: currency matters when counting the cost. Tree Physiology. 31:579-581.
Street LE, Subke JA, Sommerkorn M, Heinemeyer A, Williams M.  2011.  Turnover of recently assimilated carbon in arctic bryophytes. Oecologia. 167:325-337.
Rakitina DV, Taliansky ME, Brown JWS, Kalinina NO.  2011.  Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates. Nucleic Acids Research. 39:8869-8880.
Augusto L, Zeller B, Midwood AJ, Swanston C, Dambrine E, Schneider A, Bosc A.  2011.  Two year dynamics of foliage labelling in 8 year-old Pinus pinaster trees with 15N 26Mg and 42Ca - simulation of Ca transport using an upscaling approach. Annals of Forest Science. 68:169-178.
2010
Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall DF.  2010.  Tablet - next generation sequence assembly visualization. Bioinformatics. 26:401-402.
MacFarlane SA.  2010.  Tobraviruses - plant pathogens and tools for biotechnology (Review). Molecular Plant Pathology. 11:577-583.
Grouffaud S, Whisson SC, Birch PRJ, van West P.  2010.  Towards an understanding of how RxLR-effector proteins are translocated from oomycetes into host cells. Fungal Genetics Reviews. 24:27-36.
Tilsner J, Oparka KJ.  2010.  Tracking the green invaders: advances in imaging virus infection in plants. Biochemical Journal. 430:21-37.
Ballingall KT, Rocchi M, McKeever DJ, Wright F.  2010.  Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.
Joshi MV, Mann SG, Antelmann H, Widdick DA, Fyans JK, Chandra G, Hutchings MI, Toth IK, Hecker M, Loria R et al..  2010.  The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
Alexandrov GA, Ames D, Aumann C, Bellocchi G, Bruen M, Crout N, Erechtchoukova M, Hildebrandt A, Hoffman F, Jackisch C et al..  2010.  Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.
Dramstad D, Sang N.  2010.  Tenancy in Norwegian agriculture. Land Use Policy. 27(3):946-956.
Toftegaard T, Iason GR, Alexander IJ, Rosendahl S, Taylor AFS.  2010.  The threatened plant intermediate wintergreen (Pyrola media Sw.) associates with a wide range of biotrophic fungi in native Scottish pine woods. Biodiversity and Conservation. 19(14):3963-3971.
Travis JMJ, Smith HS, Ranwala SMW.  2010.  Towards a mechanistic understanding of dispersal evolution in plants: conservation implications. Diversity and Distributions. 16(4):690-702.
Kikvidze Z, Brooker RW.  2010.  Towards a more exact definition of the importance of competition - a reply to Freckleton et al. (2009). Journal of Ecology. 98(4):719-724.
Dunn SM, Birkel C, Tetzlaff D, Soulsby C.  2010.  Transit time distributions of a conceptual model: their characteristics and sensitivities. Hydrological Processes. 24(12):1719-1729.
Currey PM, Johnson D, Sheppard LJ, Leith ID, Toberman H, van der Wal R, Dawson LA, Artz RRE.  2010.  Turnover of labile and recalcitrant soil carbon differ in response to nitrate and ammonium deposition in an ombrotrophic peatland. Global Change Biology. 16(8):2307-2321.
Phillip S, Hunter C, Blackstock KL.  2010.  A typology for defining agritourism. Tourism Management. 31(6):754-758.
2009
Pearce MC, Chase-Topping ME, McKendrick IJ, Mellor DJ, Locking ME, Allison L, Ternent HE, Matthews L, Knight HI, Smith AW et al..  2009.  Temporal and spatial patterns of bovine Escherichia coli O157 prevalence and comparison of temporal changes in the patterns of phage types associated with bovine shedding and human E. coli O157 cases in Scotland between 1998-2000 and 2002-2004. BMC Microbiology. 9:-276.
Wright HW, Bartley K, Nisbet AJ, McDevitt RM, Sparks NHC, Brocklehurst S, Huntley JF.  2009.  The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental and Applied Acarology. 48:81-91.
Hurd CL, Hepburn CD, Currie KI, Raven JA, Hunter KA.  2009.  Testing the effects of ocean acidification on algal metabolism: considerations for experimental designs. Journal of Phycology. 45:1236-1251.
Jones HG, Serraj R, Loveys BR, Xiong LH, Wheaton A, Price AH.  2009.  Thermal infrared imaging of crop canopies for the remote diagnosis and quantification of plant responses to water stress in the field.. Functional Plant Biology. 36:978-989.
Goodall N, Kisiswa L, Prashar A, Faulkner S, Tokarczuk P, Singh K, Erichsen JT, Guggenheim J, Halfter W, Wride MA.  2009.  Three-dimensional modelling of chick embryo eye development and growth using high resolution magnetic resonance imaging. Experimental Eye Research. 89:511-521.
Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F.  2009.  TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics. 25:126-127.
Birch PRJ, Armstrong MR, Bos J, Boevink P, Gilroy EM, Taylor RM, Wawra S, Pritchard L, Conti L, Ewan R et al..  2009.  Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
Margaritopoulos JT, Kasprowicz L, Malloch GL, Fenton B.  2009.  Tracking the global dispersal of a cosmopolitan insect pest, the peach potato aphid. BMC Ecology. 9:-13. Abstract
Potokina E, Druka A, Kearsey MJ.  2009.  Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
Foito A, Byrne SL, Shepherd T, Stewart D, Barth S.  2009.  Transcriptional and metabolic profiles of Lolium perenne L. genotypes in response to a PEG induced water stress. Plant Biotechnology Journal. 7:719-732.
Potokina E, Druka A, Luo ZW, Waugh R, Kearsey MJ.  2009.  The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
van Dijk JP, Cankar K, Scheffer SJ, Beenen HGJ, Shepherd LVT, Stewart D, Davies HV, Wilcockson SJ, Leifert C, Gruden K et al..  2009.  Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract
Bahar B, Moloney AP, Monahan FJ, Harrison SM, Zazzo A, Scrimgeour CM, Begley IS, Schmidt O.  2009.  Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
Glasbey CA.  2009.  Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
Matesanz S, Brooker RW, Valladares F, Klotz S.  2009.  Temporal dynamics of marginal steppic vegetation over a 26-year period of substantial environmental change. Journal of Vegetation Science. 20:299-310.
Paterson E, Midwood AJ, Millard P.  2009.  Through the eye of the needle: A review of isotope approaches to quantify processes mediating soil carbon balance. New Phytologist. 184:19-33.
Ferrera R, Trevisol P, Acutis M, Rana G, Richter G, Baggaley NJ.  2009.  Topographic impacts on wheat yields under climate change: two contrasted case studies in Europe. Theoretical and Applied Climatology. Published online.
Shotyk W, Krachler M, Aeschbach-Hertig W, Hillier S, Zheng J.  2009.  Trace elements in recent groundwater of an artesian flow system and comparison with snow: enrichments, depletions, and chemical evolution of the water. Journal of Environmental Monitoring, 12, 208-217..
2008
Tilston EL, Halpin C, Hopkins DW.  2008.  Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere. Biology and Fertility of Soils. 44:897-901. Abstract
Chichkova NV, Galiullina RA, Taliansky ME, Vartapetian AB.  2008.  Tissue disruption activates a plant caspase-like protease with TATD cleavage specificity. Plant Stress. 2:89-95. Abstract
Potokina E, Druka A, Luo ZW, Moscou M, Wise R, Waugh R, Kearsey MJ.  2008.  Tissue-dependent limited pleiotropy affects gene expression in barley. Plant Journal. 56:287-296.
McDougall GJ, Martinussen I, Stewart D.  2008.  Towards fruitful metabolomics: High throughput analyses of polyphenol composition in berries using direct infusion mass spectrometry. Journal of Chromatography B. 871:362-369. Abstract
Druka A, Druka I, Centeno AG, Li H, Sun Z, Thomas WTB, Bonar N, Steffenson BJ, Ullrich SE, Kleinhofs A et al..  2008.  Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork. BMC Genetics. 9:-73. Abstract
Raven JA.  2008.  Transpiration: how many functions? New Phytologist. 179:905-908. Abstract
Trinder CJ, Artz RRE, Johnson D.  2008.  Temporal patterns of litter production by vascular plants colonising cut-over peatlands. Wetlands. 28(1):245-250.
Futter MN, de Wit HA.  2008.  Testing seasonal and long-term controls of streamwater DOC using empirical and process-based models. The Science of the Total Environment. 407(1):698-707.
Miller DG, Rivington M, Matthews KB, Buchan K, Bellocchi G.  2008.  Testing the spatial applicability of the Johnson-Woodward method for estimating solar radiation from sunshine duration data. Agriculture and Forest Meteorology. 148(3):466-480.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.