Publications list
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2016.
Utilization of low nitrogen barley for production of distilling quality malt. Journal of the American Society of Brewing Chemists.
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2020.
Utilization of low nitrogen barley for production of distilling quality malt. Journal of the American Society of Brewing Chemists. 79:26-32.
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2021.
The utility of spatial data to delineate river riparian functions and management zones: a review. Science of the Total Environment. 757:ArticleNo.143982.
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2021.
Utilisation of the MVA pathway to produce elevated levels of the sesquiterpene alpha copaene in potato tubers. Phytochemistry. 72:2288-2293.
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2011.
Utilisation of the Commonwealth Potato Collection in potato breeding. Euphytica. 146:9-19. Abstract
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2005.
Utilisation of different carbon sources in a shallow estuary identified through stable isotope techniques. Continental Shelf Research. 31:832-840.
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2011.
Using visible and near infrared spectroscopy to estimate carbonates and gypsum in soils in arid and subhumid regions of Isfahan, Iran. Journal of Near Infrared Spectroscopy. 23:155-165.
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2015.
Using time domain and geographic source tracers to conceptualize streamflow generation processes in lumped rainfall-runoff models. Water Resources Research. 47:15pp.
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2011.
Using the truncated auto-Poisson model for spatially correlated counts of vegetation. Journal of Agricultural Biological and Environmental Statistics. 11:1-23. Abstract
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2006.
Using the truncated auto-Poisson model for spatially correlated counts of vegetation. Journal of Agricultural, Biological and Environmental Statistics. 11(1):1-23.
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2006.
Using the ODD protocol for comparing three agent-based social simulation models of land use change. Journal of Artificial Societies and Social Simulation. 11(2):3.
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2008.
Using Tablet for visual exploration of second generation sequencing data. Briefings in Bioinformatics. 14:193-202.
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2013.
Using spectral indices to estimate water content and GPP in sphagnum moss and other peatland vegetation. IEEE Transactions on Geoscience and Remote Sensing. Published online..
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In Press.
Using species records and ecological attributes of bryophytes to develop an ecosystem health indicator. Ecological Indicators. 104:127-136.
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2019.
Using spatial-stream-network models and long-term data to understand and predict dynamics of faecal contamination in a mixed land-use catchment. Science of the Total Environment. 612:840-852.
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2018.
Using size fractionation and Pb isotopes to study Pb transport in the waters of an organic-rich upland catchment. Environmental Science and Technology. 40(4):1250-1256.
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2006.
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2018.
Using remote sensing to assess peatland resilience by estimating soil surface moisture and drought recovery. Science of the Total Environment. 761:ArticleNo.143312..
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2021.
Using qualitative evidence to enhance an agent-based modelling system for studying land use change. Journal of Artificial Societies and Social Simulation.. 13(2)
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2010.
Using plant functional traits as a link between land use and bee foraging abundance. Acta Oecologia. 50:32-39.
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2013.
Using PIT tag technology to target supplementary feeding studies. Wildlife Biology. 15(4):405-411.
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2010.
Using nematode communities to test a European scale soil biological monitoring programme for policy development. Applied Soil Ecology. 97:78-85.
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2016.
Using multistage design-based methods to construct abundance indices and uncertainty measures for delta smelt. Transactions of the American Fisheries Society. 148:710-724.
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2019.
Using model-based proposals for fast parameter inference on discrete state space, continuous-time Markov processes. Journal of the Royal Society Interface. 12:ArticleNo.20150225.
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2015.
Using mental models to understand soil management. Soil Use and Management.
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2016.
Using mental models to understand soil management. Soil Use and Management. 32:36-44.
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2016.
Using lumped conceptual rainfall-runoff models to simulate daily isotope variability with fractionation in a nested mesoscale catchment. Advances in Water Resources. 34:383-394.
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2011.
Using long-term data sets to understand transit times in contrasting headwater catchments. Journal of Hydrology. 367(3-4):237-248.
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2009.
Using local knowledge to model asymmetric preference formation in willingness to pay for environmental services. Journal of Environmental Management. 92:531-541.
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2011.
Using isotopic fractionation to link precursor to product in the synthesis of (±)-mephedrone. A new tool for combating 'legal high' drugs. Analytical Chemistry. 84:8691-8696.
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2012.
Using isotopes to understand the evolution of water ages in disturbed mixed land-use catchments. Hydrological Processes. 34:972-990.
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2020.
Using imperfect data in predictive mapping of vectors: a regional example of Ixodes ricinus distribution. Parasites and Vectors. 12:ArticleNo.536.
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2019.
Using hooves for high-resolution isotopic reconstruction of bovine dietary history. Rapid Communications in Mass Spectrometry. 21:479-486. Abstract
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2007.
Using historical climate observations to understand future climate change crop yield impacts in the Southeastern US. Climatic Change. 134:311-326.
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2016.
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2012.
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2013.
Using compositional and functional indicators for biodiversity conservation monitoring of semi-natural grasslands in Scotland. Biological Conservation. 175:82-93.
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2014.
Using combined diagnostic test results to hindcast trends of infection from cross-sectional data. PLoS Computational Biology. 12:ArticleNo.e1004901.
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2016.
Using combined diagnostic test results to hindcast trends of infection from cross-sectional data. PLOS Computational Biology.. 12
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2016.
Using artificial fluorescent particles as tracers of livestock wastes within an agricultural catchment. Science of the Total Environment. 409:1095-1103.
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2011.
Using agent-based models for prediction in complex and wicked systems. Journal of Artificial Societies and Soicial Simulation. 24:ArticleNo.2.
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2021.
Using agent-based modelling to simulate social-ecological systems across scales. Geoinformatica. 23:269-298.
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2019.
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2007.
Using a head-mounted video camera to understand social worlds and experiences. Sociological Research Online. 13(6)
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2008.
Using a general index approach to analyse camera-trap abundance indices. Journal of Wildlife Management. 75:1222-1227.
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2011.
Use of wild genotypes in breeding program increases strawberry fruit sensorial and nutritional quality. Journal of Agricultural and Food Chemistry. 62:3944-3953.
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2014.
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2007.
The use of transient expression systems for the rapid production of virus-like particles in plants. Current Pharmaceutical Design. 19:5564-5573.
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2013.
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2014.
Use of simple rainfall-runoff models as a baseline for the benchmarking of the hydrological component of complex catchment models. Archiv fur Hydrobiologie. Large Rivers Supplement.. 17(102):75-96.
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2006.
The use of sheep movement data to inform design and interpretation of slaughterhouse-based surveillance activities. Frontiers in Veterinary Science. 7:ArticleNo.205.
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2020.
Use of real-time RT-PCR to determine the prevalence of louping ill virus in live red grouse chicks. Veterinary Record. 161:660-661.
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2007.
Use of quantitative molecular diagnostic assays to investigate Fusarium dry rot in potato stocks and soil. Phytopathology. 95:1462-1471. Abstract
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2005.
Use of potato virus X (PVX)-based vectors for gene expression and virus induced gene silencing (VIGS). Current Protocols in Microbiology. 8:16I.1.1-16I.1.13. Abstract
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2008.
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2010.
Use of near-infrared reflectance spectroscopy to predict the percentage of dead versus living grass roots. Plant and Soil. 317(1-2):309-320.
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2008.
Use of multiplex terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial community. Applied and Environmental Microbiology. 72(11):7278-7285.
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2006.
Use of multicriteria decision analysis to address conservation conflicts. Conservation Biology. 27:936-944.
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2013.
The use of molecular diagnostics to investigate the epidemiology of potato diseases. Australasian Plant Pathology. 34:449-455. Abstract
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2005.
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2012.
The use of indirect or proxy markers in plant physiology. Plant Cell and Environment.
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2014.
Use of hydraulic binders for reducing sulphate leaching: application to gypsiferous soil sampled in Ile-de-France region (France). Environmental Science and Pollution Research. 25:ArticleNo.22977.
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2018.
Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection. 137:131-138.
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2009.
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2014.
Use of genome sequence data in the design and testing of SSR markers for Phytophthora species. BMC Genomics. 9:620-643. Abstract
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2008.
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2009.
The use of even-chain alkanes sprayed onto herbage as rate of passage markers in goats. Livestock Production Science. 100:195-202.
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2006.
Use of artificial neural networks in measuring characteristics of shielded radioactive plutonium for arms control. Journal of Analytical Atomic Spectrometry.. 27:432-439.
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2012.
Use of artificial drinkers by unhandled semi-feral ponies. Applied Animal Behaviour Science. 139:86-95.
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2012.
Use of a novel camera trapping approach to measure small mammal responses to peatland restoration. European Journal of Wildlife Research. 67:ArticleNo.12.
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2021.
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2014.
Urinary metabolite profiling identifies novel colonic metabolites and conjugates of phenolics in healthy volunteers. Molecular Nutrition and Food Research. 58:1414-1425.
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2014.
Urbanization, rural development and environmental health in China. Environmental Development. 28:101-110.
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2018.
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2016.
Urban geochemistry: research strategies to assist risk assessment and remediation of brownfield sites in urban areas. Environmental Geochemistry and Health. 30:565-576.
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2008.
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2021.
Uranium phosphate biomineralization by fungi. Environmental Microbiology. 17:2064-2075.
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2015.
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2006.
An unusual structure at one end of potato potyvirus particles. Journal of Molecular Biology. 357:1-8.
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2006.
Unusual long-distance movement strategies of Potato mop-top virus RNAs in Nicotiana benthamiana. Molecular Plant-Microbe Interactions. 22:381-390.
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2009.
Unusual features of pomoviral RNA movement. Frontiers in Plant Microbe Interactions. 2:259.
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2011.
Unstable dynamics and population regulation in mountain hares: a review. Biological Reviews. 82(4):527-549.
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2007.
Unravelling complexity in inter-species interaction through nonlinear dynamical models. Acta Ethologica. 16:21-30.
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2013.
Unraveling the structure of viral replication complexes at super-resolution. Frontiers in Plant Science. 4
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2013.
Unpredicted impacts of insect endosymbionts on interactions between soil organisms, plants and aphids. Proceedings of the Royal Society B. 280:1471-2954.
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2013.
Unpredictable assembly of arbuscular mycorrhizal fungal communities. Pedobiologia. 59:11-15.
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2016.
Unpacking the people - biodiversity paradox: a conceptual framework. Bioscience. 66:576-583.
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2016.
Unlocking the barley genome by chromosomal and comparative genomics. Plant Cell. 23:1249-1263.
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2011.
Universal criteria for species conservation priorities? Findings from a survey of public views across Europe Biological Conservation. 144:998-1007.
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2011.
A universal agro-hydrological model for water and nitrogen cycles in the soil-crop system SMCR_N: Critical update and further validation. Agricultural Water Management. 97:1411-1422.
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2010.
The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications. Nucleic Acids Research. 47:D259-D264.
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2019.
The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.
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2010.
A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics. 8:973-982. Abstract
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2007.
A unified approach to model selection using the likelihood ratio test. Methods in Ecology and Evolution. 2:155-162.
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2011.
The unfolded protein response and programmed cell death are induced by expression of garlic virus X p11 in Nicotiana benthamiana. Journal of General Virology. 97:1462-1468.
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2016.
Unearthing the picturesque: the validity of the preference matrix as a measure of landscape aesthetics. Landscape and Urban Planning. 124:1-13.
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2014.
Unearthing human pathogens at the agricultural-environment interface: A review of current methods for the detection of Escherichia coli O157 in freshwater ecosystems. Agriculture, Ecosystems and Environment. 140:354-360.
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2011.
Understorey plant community composition reflects invasion history decades after invasive Rhododendron has been removed. Journal of Applied Ecology. 55:874-884.
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2018.
Understanding the materialities and moralities of property: reworking collective claims to land. Transactions of the Institute of British Geographers. 32(4):507-522.
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2007.
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2014.
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2010.
Understanding the economic value of water ecosystem services from tropical forests: a systematic review for South and Central America. Journal of Forest Economics. 21:97-106.
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2015.
Understanding the economic barriers to the adoption of agroforestry A Real Options analysis. Journal of Environmental Management. 302
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2021.
Understanding the cognitive basis for human-wildlife relationships. International Journal of Sociology. 40:104-123.
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2010.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments (vol 26, pg 2413, 2012). (Correction). Rapid Communications in Mass Spectrometry. 27:284.
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2013.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments. Rapid Communications in Mass Spectrometry. 26:2413-2421.
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2012.
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2013.
Understanding social innovation for the well-being of forest-dependent communities: a preliminary theoretical framework. Forest Policy and Economics. 97:163-174.
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2018.
Understanding plantation transformation using a size-structured spatial population model. Forest Ecology and Management. 261:799-809.
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2011.
Understanding people's ideas on natural resource management: research on social representations of nature. Society and Natural Resources.. 25:1167-1181.
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2012.
Understanding mental constructs of biodiversity - implications for biodiversity management and conservation. Biological Conservation. 136(2):271-282.
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2007.
Understanding knowledge-workers’ interactions with workplace greenspace: Open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. Published online..
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2016.
Understanding knowledge-workers’ interactions with workplace greenspace: open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. Published online..
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2016.
Understanding knowledge-workers’ interactions with workplace greenspace: open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. 49:314-338.
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2017.
Understanding H-2/H-1 systematics of leaf wax n-alkanes in coastal plants at Stiffkey saltmarsh, Norfolk, UK. Geochimica et Cosmochimica Acta.. 128:13-28.
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2014.
Understanding environmental regulation: disciplinary interactions and path dependency. Environment and Planning C. 25:250-268.
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2007.
Understanding biological diversity in soil: the UK's Soil Biodiversity Research Programme. Applied Soil Ecology. 33(2):101-113.
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2006.
Understanding and influencing behaviour change by farmers to improve water quality. The Science of the Total Environment. Published online. 408(23):5631-5638.
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2010.
Undernutrition and stage of gestation influence fetal adipose tissue gene expression. Journal of Molecular Endocrinology. 54:263-275.
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2015.
Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack. Ecology Letters. 16:835-843.
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2013.
Underground allies: how and why do mycelial networks help plants defend themselves? BioEssays. 36:21-26.
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2014.
Uncovering mechanisms behind mosquito seasonality by integrating mathematical models and daily empirical population data: Culex pipiens in the UK. Parasites and Vectors. 12:ArticleNo.74.
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2019.
Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research. 198:80-92.
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2016.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
Uncertainty evaluation of mass discharge estimates from a contaminated site using a fully Bayesian framework. Water Resources Research. 46(W12552)
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2010.
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2013.
Umami compunds are a determinant of the flavor of potato (Solanum tuberosum L.).. Journal of Agricultural and Food Chemistry. 55:9627-9633. Abstract
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2007.
Ultrasonographic examination of ocular lesions in farmed halibut. Veterinary Journal. 173(2):456-458.
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2007.
Ultradian activity rhythms in large groups of newly hatched chicks (Gallus gallus domesticus). Behavioural Processes. 78(3):408-415.
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2008.
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2016.
UK land-use change and its impact on SOC: 1925-2007. Global Biogeochemical Cycles. 25
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2011.
UK food and nutrition security during and after the COVID-19 pandemic. Nutrition Bulletin. 46:88-97.
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2021.
The UK Environmental Change Network: Emerging trends in the composition of plantand animal communities and the physical environment. Biological Conservation. 142(12):2814-2832.
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2009.
Ubiquitination in plant meiosis: recent advances and high throughput methods. Frontiers in Plant Science. 12:ArticleNo.667314.
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2021.
U12-dependent intron splicing in plants. Current Topics in Microbiology and Immunology. 326:61-82.
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2008.
U-box E3 ubiquitin ligase PUB17 acts in the nucleus to promote specific immune pathways triggered by Phytophthora infestans. Journal of Experimental Botany. 66:3189-3199.
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2015.
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2013.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
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2010.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.
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2005.
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2013.
A two-point method for determining the soil water characteristic of typical northern temperate boreal soils. Geoderma Regional. 5:71-76.
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2015.
Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
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2009.
Two year dynamics of foliage labelling in 8 year-old Pinus pinaster trees with 15N 26Mg and 42Ca - simulation of Ca transport using an upscaling approach. Annals of Forest Science. 68:169-178.
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2011.
Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates. Nucleic Acids Research. 39:8869-8880.
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2011.
Two plant-viral movement proteins traffic in the endocytic recycling pathway. Plant Cell. 17:164-181. Abstract
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2005.
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2013.
Two lowland stream riffles - linkages between physical habitats and macroinvertebrates across multiple spatial scales. Aquatic Ecology. 41(3):475-490.
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2007.
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2022.
Two grapevine viruses in an ornamental Vitis species from Scotland. Journal of Plant Pathology. 87:-76. Abstract
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2005.
Two decades of altered snow cover does not affect soil microbial ability to catabolize carbon compounds in an oceanic alpine heath. Soil Biology and Biochemistry. 124:101-104.
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2018.
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
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2010.
Twenty three unsolved problems in hydrology (UPH) - a community perspective. Hydrological Sciences Journal.. 64:1141-1158.
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2019.
Turnover of recently assimilated carbon in arctic bryophytes. Oecologia. 167:325-337.
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2011.
Turnover of labile and recalcitrant soil carbon differ in response to nitrate and ammonium deposition in an ombrotrophic peatland. Global Change Biology. 16(8):2307-2321.
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2010.
Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
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2009.
TSIS: an R package to infer alternative splicing isoform switches for time-series data. Bioinformatics. 33:3308-3310.
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2017.
TRY plant trait database - enhanced coverage and open access. Global Change Biology. 26:119-188.
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2020.
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2018.
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2020.
tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species. PLoS ONE. 9:e102502.
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2014.
Tropical wetland ecosystem service assessments in East Africa; A review of approaches and challenges. Environmental Modelling and Software. 102:260-273.
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2018.
The tropical peatland plantation-carbon assessment tool: estimating CO2 emissions from tropical peat soils under plantations. Mitigation and Adaptation Strategies for Global Change. 19:863-885.
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2014.
Trophy hunters' willingness to pay for wildlife conservation and community benefits. Conservation Biology. 29:1111-1121.
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2015.
Triggering change: towards a conceptualisation of major change processes in farm decision-making. Journal of Environmental Management. 104:142-151.
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2012.
The tribunal atmosphere: On qualitative barriers to access to justice. Geoforum. 119:61-71.
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2021.
Trend analysis for integrated regional climate change impact assessments in the Lusatian river catchments (north-eastern Germany). Regional Environmental Change. 17:1751-1762.
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2017.
Trees, soils, and warthogs - distribution of services and disservices from reforestation areas in southern Ethiopia. Forest Policy and Economics. 84:112-119.
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2017.
Tree species' influences on soil carbon dynamics revealed with natural abundance C-13 techniques. Plant and Soil. 400:285-296.
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2016.
Tree competition and defense against herbivores: currency matters when counting the cost. Tree Physiology. 31:579-581.
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2011.
Treatment with fungicides influences phytochemical quality of blackcurrant juice. Annals of Applied Biology. 160:86-96.
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2012.
Treatment of organic resources before soil incorporation in semi-arid regions improves resilience to El Nino, and increases crop production and economic returns. Environmental Research Letters. 14:ArticleNo.085004.
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2019.
Transpiration: how many functions? New Phytologist. 179:905-908. Abstract
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2008.
Transparent soil microcosms allow 3D spatial quantification of soil microbiological processes in vivo. Plant Signaling and Behavior. 9
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2014.
Transparent soil for imaging the rhizosphere. PLoS ONE. 7:e44276.
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2012.
Transmission of pro-environmental norms in large organizations. Sustainable Production and Consumption. 19:25-32.
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2019.
Translocation tactics: a framework to support the IUCN guidelines for wildlife translocations and improve the quality of applied methods. Journal of Applied Ecology. 52:1598-1607.
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2015.
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2007.
Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract
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2006.
Translocation of N in the xylem of cherry and poplar during remobilization: scaling up to field-grown trees. Tree Physiology. 26:527-536.
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2006.
Translocation of 15N indicates nitrogen recycling in the mat-forming lichen Cladonia portentosa. New Phytologist. 168:423-434. Abstract
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2005.
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2017.
Transitions to greater legume inclusion in cropland: defining opportunities and estimating benefits for the nitrogen economy. Food and Energy Security. 8:ArticleNo.e00175.
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2019.
Transition to density dependence in a reintroduced ecosystem engineer. Biodiversity and Conservation. 28:3803-3830.
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2019.
Transit time distributions of a conceptual model: their characteristics and sensitivities. Hydrological Processes. 24(12):1719-1729.
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2010.
Transient and asymptotic dynamics of reinforcement learning in games. Games and Economic Behavior. 61(2):259-276.
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2007.
Transhumance livestock production in the Northern Areas of Pakistan: nutritional inputs and productive outputs. Agriculture, Ecosystems and Environment. 117(2-3):195-204.
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2006.
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2006.
Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
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2012.
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2016.
Transformation of vanadinite (Pb5(VO4)3Cl) by fungi. Environmental Microbiology. Published online..
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2014.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
The transfer of radionuclides from saltmarsh vegetation to sheep tissues and milk. Journal of Environmental Radioactivity. 98(1-2):36-49.
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2007.
The transfer of radiocaesium to ewes through a breeding cycle - an illustration of the pitfalls of the transfer coefficient. Journal of Environmental Radioactivity. 98(1-2):24-35.
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2007.
The transfer of different forms of 35S to goat milk. Journal of Environmental Radioactivity. 98(1-2):177-190.
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2007.