Publications list
.
2009.
Chemical characterisation of bog peat and dried peat of the Australian Alps. Australian Journal of Soil Research. 43:963-971. Abstract
.
2005.
Determinants of courses of action in bioenergy villages responding to changes in renewable heat utilization policy. Utilities Policy. 41:183-192.
.
2016.
A molecular approach to explore the extent of the threatened fungus Hypocreopsis rhododendri within wood. Fungal Biology. 116:354-362.
.
2012.
Bioconda: A sustainable and comprehensive software distribution for the life sciences. Nature Methods. 15:475-476.
.
2018.
Berry polyphenols inhibit a-amylase in vitro: Identifying active components in rowanberry and raspberry. Journal of Agricultural and Food Chemistry. 59:2324-2331.
.
2011.
Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move. Machine Learning. 71:265-305. Abstract
.
2008.
Modelling non-stationary dynamic gene regulatory processes with the BGM model. Computational Statistics. 26:199-218.
.
2011.
A non-homogeneous dynamic bayesian network with sequentially coupled interaction parameters for applications in systems and synthetic biology. Statistical Applications in Genetics and Molecular Biology. 11
.
2012.
Non-homogeneous dynamic Bayesian networks for continuous data. Machine Learning. 83:355-419.
.
2011.
.
2011.
Modelling nonstationary gene regulatory processes. Advances in Bioinformatics. :-749848.
.
2010.
Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract
.
2008.
Ensuring water resource security in China; the need for advances in evidence-based policy to support sustainable management. Environmental Science and Policy. 75:65-69.
.
2017.
Second-order analysis of inhomogeneous spatial point processes with proportional intensity functions. Journal of American Statistical Association. 103(482):769-777.
.
2008.
.
2019.
.
2006.
The dynamics of Phytophthora infestans populations in the major potato-growing regions of Asia - a review. Plant Pathology. 70:1015-1031.
.
2021.
On the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology. 148:1908-1912.
.
2008.
Putting transdisciplinarity into practice: a mixed mode procedure for stakeholder participation in natural resource management. Journal of Environmental Planning and Management. 58:1827-1852.
.
2015.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
.
2018.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
.
2018.
Preceding crop and weed management history affect denitrification and denitrifier community structure throughout the development of durum wheat. Agriculture, Ecosystems and Environment. 212:49-63.
.
2015.
Carbon in tundra soils in the Lake Labaz region of arctic Siberia. European Journal of Soil Science. 58(5):1164-1174.
.
2007.
Evaluation of a survey approach to estimating the prevalence of cattle carrying antimicrobial-resistant Escherichia coli. Veterinary Journal. 175:416-418. Abstract
.
2008.
Water safety plan enhancements with improved drinking water quality detection techniques. Science of the Total Environment. 698:ArticleNo.134185.
.
2020.
.
2020.
Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size. BMC Systems Biology. 11:ArticleNo.62.
.
2017.
TSIS: an R package to infer alternative splicing isoform switches for time-series data. Bioinformatics. 33:3308-3310.
.
2017.
.
2021.
Dynamic localization of two tobamovirus ORF6 proteins involves distinct organellar compartments. Journal of General Virology. 94:230-240.
.
2013.
Single amino acid substitution in the tobacco mosaic virus ORF6 protein suppresses formation of complex with eEF1A and cooperative nucleic acids binding in vitro. Doklady Biochemistry and Biophysics. 448:1-4.
.
2013.
Replacement of amino acid in the ORF6 protein of tobacco mosaic virus prevents the formation of a complex with eEF1A and the cooperative binding to nucleic acids in vitro. Proceedings of the Russian Academy of Sciences. 448:1-5.
.
2013.
.
2014.
The spliceosome assembly factor GEMIN2 attenuates the effects of temperature on alternative splicing and circadian rhythms. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112:9382-9387.
.
2015.
Effects of pre- and postnatal polychlorinatedbiphenylexposure on emotional reactivity observed in lambs before weaning. Ecotoxicology and Environmental Safety. 74:1396-1401.
.
2011.
Legume-nodulating betaproteobacteria: diversity, host range, and future prospects. Molecular Plant-Microbe Interactions. 24:1276-1288.
.
2011.
Microbial community structure in soils with decomposing residues from plants with genetic modifications to lignin biosynthesis. FEMS Microbiology Letters. 263:68-75. Abstract
.
2006.
Low genetic variation support bottlenecks in Scandinavian red deer. European Journal of Wildlife Research. 57:1137-1150.
.
2011.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
.
2009.
Soil characterisation by bacterial community analysis for forensic applications: a quantitative comparison of environmental technologies. Forensic Science International. 26:21-29.
.
2016.
Soil characterisation by bacterial community analysis for forensic applications: a quantitative comparison of environmental technologies. Forensic Science International. 26:21-29.
.
2017.
Multi-environment QTL mapping in blackcurrant (Ribes nigrum L.) using mixed models. Theoretical and Applied Genetics. 121:1483-1488.
.
2010.
Unpredicted impacts of insect endosymbionts on interactions between soil organisms, plants and aphids. Proceedings of the Royal Society B. 280:1471-2954.
.
2013.
.
2013.
.
2018.
TetraploidMap for Windows: Linkage map construction and QTL mapping in autotetraploid species. Journal of Heredity. 98:727-729. Abstract
.
2007.
TetraploidSNPMap: Software for linkage analysis and QTL mapping in autotetraploid populations using SNP dosage data. Journal of Heredity. 108:438-442.
.
2017.
Functional roles of effectors of plant-parasitic nematodes. Gene. 492:19-31.
.
2012.
Horizontal gene transfer in nematodes: a catalyst for plant parasitism? Molecular Plant-Microbe Interactions. 24:879-887.
.
2011.
Selective autophagy limits Cauliflower mosaic virus infection by NBR1-mediated targeting of viral capsid protein and particles. Proceedings of the National Academy of Sciences (PNAS). 114:E2026-E2035.
.
2017.
Shortcomings of political instruments for agricultural soil conservation. Berichte uber Landwirtschaft. 89:331-350.
.
2011.
Costs of implementing agricultural soil protection policies - insights from two German cases. Journal of Environmental Policy and Planning. 17:656-672.
.
2015.
Folate in pregnancy and imprinted gene and repeat element methylation in the offspring. American Journal of Clinical Nutrition. 97:94-99.
.
2013.
Vitamin D in pregnancy at high latitude in Scotland. British Journal of Nutrition. 109:898-905.
.
2013.
Integrated near infrared and ultraviolet spectroscopy techniques for determination of hydrate inhibitors in the presence of NaCl. Industrial and Engineering Chemistry Research. 57:11728-11737.
.
2018.
.
2021.
Inter-laboratory calibration of new silver orthophosphate comparison materials for stable oxygen isotope analysis of phosphates. Rapid Communications in Mass Spectrometry. 25:579-584.
.
2011.
Differences in nutrient foraging among Trifolium subterraneum cultivars deliver improved P-acquisition efficiency. Plant and Soil. 424:539-554.
.
2018.
Root hairs improve root penetration, root-soil contact, and phosphorus acquisition in soils of different strength. Journal of Experimental Botany. 64:3711-3721.
.
2013.
.
2014.
The relationship between forest cover and diet quality: a case study of rural southern Malawi. Food Security. 11:635-650.
.
2019.
The impact of population growth and climate change on food security in Africa: looking ahead to 2050. International Journal of Agricultural Sustainability. 15:124-135.
.
2017.
.
2005.
The potential for use of gastropod molluscs as bioindicators of endocrine disrupting compounds in the terrestrial environment. Journal of Environmental Monitoring. 11(3):491-497.
.
2009.
Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract
.
2009.
Biophysics of the Vadose Zone: from reality to model systems and back again. Vadose Zone Journal. 12
.
2013.
A brief overview of the causes, impacts and amelioration of soil water repellency - a Review. Soil and Water Research. 3:S21-S29.
.
2008.
Describing soil crack formation using elastic-plastic fracture mechanics. European Journal of Soil Science. 56:31-38. Abstract
.
2005.
.
2006.
.
2011.
Biohydrology: coupling biology and soil hydrology from pores to landscapes preface. Ecohydrology. 3:379-381.
.
2010.
Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
.
2012.
Cell biology: up against the wall. Current Biology. 23:R1048-R1050.
.
2013.
Gene stacking in transgenic plants - the challenge for 21st century plant biotechnology. Plant Biotechnology Journal. 3:141-155. Abstract
.
2005.
Lignin engineering to improve saccharification and digestibility in grasses. Current Opinion in Biotechnology. 56:223-229.
.
2019.
Net ecosystem exchange from two formerly afforested peatlands undergoing restoration in the Flow Country of northern Scotland. Mires and Peat. 23:ArticleNumber05.
.
2019.
Begomoviruses from mungbeans in Pakistan: epitope profiles, DNA A sequences and phylogenetic relationships. Archives of Virology. 149:809-819. Abstract
.
2005.
Cohort variation in individual body mass dissipates with age in large herbivores. Ecological Monographs. 86:517-543.
.
2016.
Cohort variation in individual body mass dissipates with age in large herbivores. Ecological Monographs. 86:517-543.
.
2016.
Amplification of chloroplast DNA using the polymerase chain reaction (PCR): a practical activity for secondary school students. Journal of Biological Education. 40:172-177. Abstract
.
2006.
.
2005.
Comparative virulence of Caribbean, Brazilian and European isolates of Toxoplasma gondii. Parasites and Vectors. 12:ArticleNo.104.
.
2019.
Sucrose transport in the phloem; integrating root responses to phosphorus starvation. Journal of Experimental Botany. 59:93-109. Abstract
.
2008.
Sugar signalling in root responses to low phosphorus availability. Plant Physiology. 156:1033-1040.
.
2011.
Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa. Plant Physiology. 156:1230-1241.
.
2011.
.
2011.
Shoot yield drives phosphorus use efficiency in Brassica oleracea and correlates with root architecture traits. Journal of Experimental Botany. 60:1953-1965.
.
2009.
Biomechanics of plant roots: estimating localised deformation with particle image velocimetry. Biosystems Engineering. 94:119-132. Abstract
.
2006.
.
2008.
.
2020.
Improving the nutritional value of crops through enhancement of L-ascorbic acid (vitamin C) content: rationale and biotechnological opportunities. Journal of Agricultural and Food Chemistry. 53:5248-5257. Abstract
.
2005.
Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature. Plant Cell and Environment. 37:439-450.
.
2014.
Biosynthesis and catabolism of L-ascorbic acid in plants. Critical Reviews in Plant Sciences. 24:167-188. Abstract
.
2005.
L-Ascorbic acid accumulation in fruit of Ribes nigrum occurs by in situ biosynthesis via the L-galactose pathway. Functional Plant Biology. 34:1080-1091. Abstract
.
2007.
Ascorbic acid conjugates isolated from the phloem of Cucurbitaceae. Phytochemistry. 69:1850-1858. Abstract
.
2008.
Recent patents on vitamin C: Opportunities for crop improvement and single-step biological manufacture. Recent Patents on Food, Nutrition and Agriculture. 1:39-49. Abstract
.
2009.
Mechanisms of plant-insect interaction Preface. Journal of Experimental Botany. 66:421-424.
.
2015.
A role for symplastic gating in the control of the potato tuber life cycle. Plant Signaling and Behaviour. 3:27-29. Abstract
.
2008.
A novel technique for retrospective genetic analysis of the response to vaccination or infection using cell-free DNA from archived sheep serum and plasma. Veterinary Research. 51:ArticleNo.9..
.
2020.
The economic benefits of invasive species management. People and Nature. 1:124-137.
.
2019.
Late-season foliar urea applications can increase berry yeast-assimilable nitrogen in winegrapes (Vitis vinifera L.). American Journal of Enology and Viticulture. 65:89-95.
.
2014.
.
2016.
Amino acid composition of grape (Vitis vinifera L.) juice in response to applications of urea to the soil or foliage. American Journal of Enology and Viticulture. 67:47-55.
.
2016.
Spatial heterogeneity in climate change effects decouples the long-term dynamics of wild reindeer populations in the high Arctic. Global Change Biology. 25:2656-2668.
.
2019.
More frequent extreme climate events stabilize reindeer population dynamics. Nature Communications. 10:ArticleNo.1616.
.
2019.
Capturing coastal geomorphological change within regional integrated assessment: an outcome-driven fuzzy logic approach. Journal of Coastal Research. 26(5):831-842.
.
2010.
The influence of pedology and changes in soil moisture status on manganese release from upland catchments: soil core laboratory experiments. Water Air and Soil Pollution. 182(1-4):369-382.
.
2007.
Agro-meteorological indices and climate model uncertainty over the UK. Climatic Change. 128:113-126.
.
2015.
Impact of external sources of infection on the dynamics of bovine tuberculosis in modelled badger populations. BMC Veterinary Research. 8:92.
.
2012.
Modelling the impact of vaccination on tuberculosis in badgers. Epidemiology and Infection. 141:1417-1427.
.
2013.
Reservoir sedimentation and its mitigating strategies: a case study of Angereb reservoir (NW Ethiopia). Journal of Soil and Sediments. 12:291-305.
.
2012.
Drought-induced nitrous oxide flux dynamics in an enclosed tropical forest. Global Change Biology. 11:1247-1257. Abstract
.
2005.
.
2009.
Error propagation in measured streamflow and water quality data for small rural watersheds. Transactions of the American Society of Agricultural Engineers. 49:689-701.
.
2006.
Faecal biomarkers can distinguish specific mammalian species in modern and past environments. PLoS ONE. 14:ArticleNo.e0211119.
.
2019.
The 2015 Bioinformatics Open Source Conference (BOSC 2015). PLoS Computational Biology. 12:e1004691.
.
2016.
.
2016.
Global decline in aggregated migrations of large terrestrial mammals. Endangered Species Research. 7:55-76.
.
2009.
Another quarter century of great progress in understanding the biological properties of plant viruses. Annals of Applied Biology. 146:15-37. Abstract
.
2005.
Using hooves for high-resolution isotopic reconstruction of bovine dietary history. Rapid Communications in Mass Spectrometry. 21:479-486. Abstract
.
2007.
Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
.
2016.
A brief outline of the development of plant virology in the 20th century. Journal of Plant Pathology. 91:509-520.
.
2009.
Breast cancer risk and imprinting methylation in blood. Clinical Epigenetics. 7:ArticleNo.92.
.
2015.
Three-dimensional growth of bovine hoof as recorded by carbon stable isotope ratios. Rapid Communications in Mass Spectrometry. 21:3971-3976. Abstract
.
2007.
Plant virology in the 20th century. Phytopathology. 98, Supplement:S193-S194. Abstract
.
2008.
Culling wildlife hosts to control disease: mountain hares, red grouse and louping ill virus. Journal of Applied Ecology. 46(4):926-930.
.
2010.
Quantifying turnover in biodiversity of British breeding birds. Journal of Applied Ecology. 53:469-478.
.
2015.
.
2011.
No evidence for compensatory thermal adaptation of soil microbial respiration in the study of Bradford et al. (2008). Ecology Letters. 12:E12-E14.
.
2009.
Soil microbial respiration in arctic soil does not acclimate to temperature. Ecology Letters. 11:1092-1100. Abstract
.
2008.
The response of organic matter mineralisation to nutrient and substrate additions in sub-arctic soils. Soil Biology and Biochemistry. 42(1):92-100.
.
2010.
A potential loss of carbon associated with greater plant growth in the European Arctic. Nature Climate Change. 2:875-879.
.
2012.
Soil microbial respiration in arctic soil does not acclimate to temperature. Ecology Letters. 11(10):1092-1100.
.
2008.
The age of CO2 released from soils in contrasting ecosystems during the arctic winter. Soil Biology and Biochemistry. 63:1-4.
.
2013.
The response of organic matter mineralisation to nutrient and substrate additions in subarctic soils. Soil Biology & Biochemistry. 42:92-100.
.
2010.
The impact of injury on apparent survival of whale sharks (Rhincodon typus) in South Ari Atoll Marine Protected Area, Maldives. Scientific Reports. 11:ArticleNo.937.
.
2021.
.
2020.
Soil fauna-microbe interactions: towards a conceptual framework for research. European Journal of Soil Biology. 42:S54-S60. Abstract
.
2006.
A genome wide association study of arabinoxylan content in 2-row spring barley grain. PLoS ONE. 12:e0182537.
.
2017.
Marine litter: Progress in developing an integrated policy approach in Scotland. Marine Policy. 42:49-55.
.
2013.
Answering biological questions by analysis of the strawberry metabolome. Metabolomics. 14:ArticleNo.145.
.
2018.
.
2019.
Two plant-viral movement proteins traffic in the endocytic recycling pathway. Plant Cell. 17:164-181. Abstract
.
2005.
Nucleolar localisation of Potato leafroll virus capsid proteins. Journal of General Virology. 86:2891-2896. Abstract
.
2005.
.
2013.
Whole-systems analysis of environmental and economic sustainability in arable cropping systems: a case study. Agronomy. 9:ArticleNo.438.
.
2019.
Agroecological practices for whole system sustainability. CABI Review, 16..
.
2021.
.
2005.
Arable plant communities as indicators of farming practice. Agriculture, Ecosystems and Environment. 138:17-26.
.
2010.
Functional approaches for assessing plant and invertebrate abundance patterns in arable systems. Basic and Applied Ecology. 10:34-42. Abstract
.
2009.
.
2018.
Combining qualitative and quantitative methods in the measurement of rural poverty: The case of Iran. Social Indicators Research. 75(3):361-394.
.
2006.
Cinnamon shows antidiabetic properties that are species-specific: effects on enzyme activity inhibition and starch digestion. Plant Foods for Human Nutrition. 74:544-552.
.
2019.
Strain identity of the ectomycorrhizal fungus Laccaria bicolor is more important than richness in regulating plant and fungal performance under nutrient rich conditions. Frontiers in Microbiology. 8:ArticleNo.1874.
.
2017.
.
2017.
U-box E3 ubiquitin ligase PUB17 acts in the nucleus to promote specific immune pathways triggered by Phytophthora infestans. Journal of Experimental Botany. 66:3189-3199.
.
2015.
.
2017.
The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: Enoplea):considerable economization in the length and structural features of encoded genes. Journal of Molecular Evolution. 61:819-833. Abstract
.
2005.
Efficient degradation of diclofenac sodium by periodate activation using Fe/Cu bimetallic modified sewage sludge biochar/UV system. Science of the Total Environment. 783:ArticleNo.146794.
.
2021.
Phytophthora infestans effector SFI3 targets potato UKB to suppress early immune transcriptional response. New Phytologist. 222:438-454.
.
2019.
Plant pathogen effector utilizes host susceptibility factor NRL1 to degrade the immune regulator SWAP70. Proceedings of the National Academy of Sciences of the USA. 115:E7834-E7843.
.
2018.
Effects of successive seasons of genetically modified herbicide-tolerant maize cropping on weeds and invertebrates. Annals of Applied Biology. 149:249-254. Abstract
.
2006.
DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna. Epigenetics and Chromatin. 14:ArticleNo.4.
.
2021.
.
2006.
Candidate genes associated with bud dormancy release in blackcurrant (Ribes nigrum L.). BMC Plant Biology. 10:-202.
.
2010.
Measuring plant-available MG, Ca and K pools in the soil - an isotopic dilution assay. ACS Earth and Space Chemistry. 2:292-313.
.
2018.
.
2013.
SPICY: towards automated phenotyping of large pepper plants in the greenhouse. Functional Plant Biology. 39:870-877.
.
2012.
The zig-zag-zig in oomycete-plant interactions. Molecular Plant Pathology. 10:547-562.
.
2009.
.
2009.
Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley. Plant Physiology. 138:2155-2164. Abstract
.
2005.
Generation and screening of a BAC library from a diploid potato clone to unravel durable late blight resistance on linkage group IV. International Journal of Plant Genomics. :-51421. Abstract
.
2007.
.
2005.
.
2016.
.
2010.
Spatial and seasonal variations in nitrogen leaching and acidity across four acid-impacted regions of the UK. Water, Air and Soil Pollution. 185(1-4):3-19.
.
2007.
Who put the N in PristiNe? Impacts of nitrogen enrichment in fragile mountain environments Mountain Research and Development. 28(3-4):210-215.
.
2008.
The role of catchment characteristics in determining surface water nitrogen in four upland regions in the UK. Hydrology and Earth System Sciences. 11(1):356-371.
.
2007.
Assessing recovery from acidification of European surface waters in the year 2010: evaluation of projections made with the MAGIC model in 1995. Environmental Science and Technology. 48:13280-13288.
.
2014.
Modelling the long-term response of stream water chemistry to forestry in Galloway, Southwest Scotland. Ecological Indicators. 37:396-411.
.
2014.
The present is the key to the past, but what does the future hold for the recovery of surface waters from acidification? Water Research. 44(10):3166-3180.
.
2010.
.
2014.
.
2010.
The relationship between soil inoculum and the development of Fusarium dry rot in potato cultivars Asterix and Saturna. European Journal of Plant Pathology. 146:711-714.
.
2014.
An outlook on protein S-acylation in plants: what are the next steps? Journal of Experimental Botany. 68:3155-3164.
.
2017.
Progress in understanding the mechanisms and functional importance of protein-membrane interactions in plants. New Phytologist. 204:741-743.
.
2014.
The importance of lipid modified proteins in plants. New Phytologist. 205:476-489.
.
2015.
An allelic series reveals essential roles for FY in plant development in addition to flowering-time control. Development. 132:3597-3607. Abstract
.
2005.
British Escherichia coli O157 in Cattle Study (BECS): to determine the prevalence of E-coli O157 in herds with cattle destined for the food chain. Epidemiology and Infection. 145:3168-3179.
.
2017.
.
2019.
The potential of chlorhexidine lavage to reduce the shedding of VTEC 0157 from cattle. Cattle Practice. 22:280-280.
.
2014.
Efficient generation of transgenic barley: The way forward to modulate plant-microbe interactions. Journal of Plant Physiology. 165:71-82. Abstract
.
2008.
Elevated atmospheric CO2 impairs aphid escape responses to predators and conspecific alarm signals. Journal of Chemical Ecology. 40:1110-1114.
.
2014.
Antagonistic interactions between an invasive alien and a native coccinellid species may promote coexistence. Journal of Animal Ecology. 85:1087-1097.
.
2016.
Top-down control by Harmonia axyridis mitigates the impact of elevated atmospheric CO2 on a plant-aphid interaction. Agricultural and Forest Entomology. 16:350-358.
.
2014.
.
2010.
Diversity of carbon use strategies in a kelp forest community: implications for a high CO2 ocean. Global Change Biology. 17:2488-2497.
.
2011.
E-coli O157 on Scottish cattle farms: Evidence of local spread and persistence using repeat cross-sectional data. BMC Veterinary Research. 10
.
2014.
Associational relationships at multiple spatial scales affect forest damage by moose. Forest Ecology and Management. 348:97-107.
.
2015.