Publications list
Increased use of bayesian network models has improved environmental risk assessment. Journal of Integrated Environmental Assessment and Management.
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2020.
Increased use of bayesian network models has improved environmental risk assessments. Integrated Environmental Assessment and Management. 17:53-61.
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2021.
High-nature-value grasslands have the capacity to cope with nutrient impoverishment induced by mowing and livestock grazing. Journal of Applied Ecology. 52:1073-1081.
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2015.
Calcium plus magnesium indicates digestibility. Ecology Letters. 21:885-895.
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2018.
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2018.
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2013.
Role of lipopolysaccharide and biofilm formation during endophytic colonization of rice (Oryza sativa L.) and nodulation of Sesbania cannabina by Rhizodium sp. IRBG74. Journal of Experimental Botany. 67:5869-5884.
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2016.
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2016.
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2016.
The role of mixotrophic protists in the biological carbon pump. Biogeosciences. 11:995-1005.
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2014.
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2021.
Ash dieback in the UK: a review of the ecological and conservation implications and potential management options. Biological Conservation. 175:95-109.
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2014.
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2012.
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In Press.
The ecological engineering impact of a single tree species on the soil microbial community. Journal of Ecology. 98(1):50-61.
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2010.
Identifying the ecological and societal consequences of a decline in Buxus forests in Europe and the Caucasus. Biological Invasions. Published online..
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2018.
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2018.
Is vegetation composition or soil chemistry the best predictor of the soil microbe community? Plant and Soil. 333:417-430.
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2010.
Combining plant resistance and a natural enemy to control Amphorophora idaei. BioControl. 55:321-327.
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2010.
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2013.
Potential impacts of the loss of Fraxinus excelsior due to ash dieback on woodland vegetation in Great Britain. New Journal of Botany, Published online.. 6
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2016.
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2020.
Identifying substitute host tree species for epiphytes: the relative importance of tree size and species, bark and site characteristics. Applied Vegetation Science. 24:ArticleNo.e12569.
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2021.
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2021.
Plant defense against herbivorous pests: exploiting resistance and tolerance traits for sustainable crop protection. Frontiers in Plant Science. 7
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2016.
Collapsing foundations: the ecology of the British oak, implications of its decline and mitigation options. Biological Conservation. 233:316-327.
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2019.
The effect of restoration techniques on non-target species: case studies in moorland systems. Applied Vegetation Science. 12(1):81-91.
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2009.
Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract
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2007.
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2016.
Soil microarthropod-plant community relationships in alpine moss- sedge heath. Applied Soil Ecology. 111:1-8.
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2017.
Arthropod pests of currant and gooseberry crops in the UK: their biology, management and future prospects. Agricultural and Forest Entomology. 13:221-237.
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2011.
The cascading effects of birch on heather moorland: a test for the top-down control of an ecosystem engineer. Journal of Ecology. 95(3):540-554.
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2007.
Overstory and understory vegetation interact to alter soil community composition and activity. Plant and Soil. 352:65-84.
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2012.
Forty years of change in Scottish grassland vegetation: increased richness, decreased diversity and increased dominance. Biological Conservation. 212:327-336.
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2017.
Is vegetation composition or soil chemistry the best predictor of the soil microbial community? Plant and Soil. 333(1-2):417-430.
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2010.
Relative importance of local- and large-scale drivers of alpine soil microarthropod communities. Oecologia. 182:913-924.
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2016.
Decline in atmospheric sulphur deposition and changes in climate are the major drivers of long-term change in grassland plant communities in Scotland. Environmental Pollution. 235:956-964.
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2018.
Assessing dietary exposure to cadmium in a metal recycling community in Vietnam: age and gender aspects. Science of the Total Environment. 416:164-171.
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2012.
Evaluating the utility of N-15 and O-18 isotope abundance analyses to identify nitrate sources: a soil zone study. Water Research. 46:3723-3736.
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2012.
Simplifying and improving the extraction of nitrate from freshwater for stable isotope analyses. Journal of Environmental Monitoring. 13:2062-2066.
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2011.
Novel environment exploration and home range size in starlings Sturnus vulgaris. Behavioral Ecology. 21(6):1321-1329.
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2010.
Soil carbon 4 per mille. Geoderma. 292:59-86.
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2017.
Soil carbon 4 per mille. Geoderma. 292:59-86.
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2017.
Rejoinder to Comments on Minasny et al., 2017 Soil carbon 4 per mille. Geoderma, 292, 59-86. Geoderma. 309:124-129.
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2018.
Rejoinder to Comments on Minasny et al., 2017 Soil carbon 4 per mille. Geoderma, 292, 59-86. Geoderma. 309:124-129.
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2018.
Digital mapping of peatlands - A critical review. Earth Science Reviews. 196
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2019.
Smoothed particle hydrodynamics for root growth mechanics. Engineering Analysis with Boundary Elements. 105:20-30.
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2019.
Revealing ecological networks using Bayesian network inference algorithms. Ecology. 91(7):1892-1899.
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2010.
A multi-agent system model of pastoralist behaviour in Kazakhstan. Ecological Complexity. 3(1):23-36.
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2006.
Genebank genomics highlights the diversity of a global barley collection. Nature Genetics.
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2019.
Genebank genomics highlights the diversity of a global barley collection. Nature Genetics.
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2019.
EORNA, a barley gene and transcript abundance database. Scientific Data. 8:ArticleNo.90.
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2021.
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2009.
Tablet - next generation sequence assembly visualization. Bioinformatics. 26:401-402.
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2010.
Simulating soil organic carbon in a rice-soybean-wheat-soybean chronosequence in Prairie County, Arkansas using the Century model. Electronic Journal of Integrative Biosciences. 6(1):41-52.
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2008.
Using Tablet for visual exploration of second generation sequencing data. Briefings in Bioinformatics. 14:193-202.
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2013.
Flapjack - graphical genotype visualization. Bioinformatics. 26:3133-3134.
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2010.
Integrated modelling of natural and social systems in land change science PREFACE. Landscape Ecology. 24(9):1145-1147.
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2009.
Managing small populations in practice: black rhino in the Ngorongoro Crater, Tanzania. Oryx. 40(3):319-323.
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2006.
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2015.
Landscape structure affects the prevalence and distribution of a tick-borne zoonotic pathogen. Parasites and Vectors. 11:ArticleNo.621.
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2018.
Effects of conservation management of landscapes and vertebrate communities on Lyme borreliosis risk in the United Kingdom. Philosophical Transactions of the Royal Society B, Biological Sciences. 372:ArticleNo.20160123.
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2017.
An invasive mammal (the gray squirrel, Sciurus carolinensis) commonly hosts diverse and atypical genotypes of the zoonotic pathogen Borrelia burgdorferi Sensu Lato. Applied and Environmental Microbiology. 81:4236-4245.
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2015.
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2018.
The effectiveness of old and new strategies for the long-term control of Pteridium aquilinum, an 8-year test. Weed Research. 56:247-257.
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2016.
How do different competing species influence the response of Betula pubescens Ehrh. to browsing? Basic and Applied Ecology. 7(2):123-132.
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2006.
Above- and below-ground competition effects of two heathland species: Implications for growth and response to herbivory in birch saplings. Basic and Applied Ecology. 9(1):55-66.
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2008.
Incorporating spatial dependence in predictive vegetation models. Ecological Modelling. 202(3-4):225-242.
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2007.
Testing the spatial applicability of the Johnson-Woodward method for estimating solar radiation from sunshine duration data. Agriculture and Forest Meteorology. 148(3):466-480.
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2008.
Quantifying the contribution of soil organic matter turnover to forest soil respiration using natural abundance delta 13C. Soil Biology and Biochemistry. 42(6):935-943.
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2010.
Tree competition and defense against herbivores: currency matters when counting the cost. Tree Physiology. 31:579-581.
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2011.
Partitioning soil surface CO2 efflux into autotrophic and heterotrophic components, using natural gradients in soil &13C in an undisturbed savannah soil. Soil Biology and Biochemistry. 40(7):1575-1582.
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2008.
Nitrogen storage and remobilization by trees: ecophysiological relevance in a changing world. Tree Physiology. 30(9):1083-1095.
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2010.
Environmental change and carbon limitation in trees: a biochemical, ecophysiological and ecosystem appraisal. New Phytologist. 175(1):11-28.
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2007.
Translocation of N in the xylem of cherry and poplar during remobilization: scaling up to field-grown trees. Tree Physiology. 26:527-536.
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2006.
Does grassland vegetation drive soil microbial diversity? Nutrient Cycling in Agro-Ecosystems. 88(2):147-158.
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2010.
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2016.
Plant cell and biotechnology studies in Linum usitatissimum - a review. Plant Cell, Tissue and Organ Culture. 82:93-103. Abstract
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2005.
Response of ectomycorrhizal extramatrical mycelium production and isotopic composition to in-growth bag size and soil fauna. Soil Biology and Biochemistry. 66:154-162.
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2013.
Host immunity shapes the impact of climate changes on the dynamics of parasite infections. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 113:2970-2975.
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2016.
Challenges in measuring the d13C of the soil surface CO2 efflux. Rapid Communications in Mass Spectrometry. 25:232-242.
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2011.
Measuring the 13C content of soil respired CO2 using a novel open chamber system. Rapid Communications in Mass Spectrometry. 22:2073-2081.
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2008.
Collection and storage of CO2 for 13C analysis: an application to separate soil CO2 efflux into root and soil derived components. Rapid Communications in Mass Spectrometry. 20(22):3379-3384.
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2006.
Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia. Persoonia - Molecular Phylogeny and Evolution of Fungi. 41:39-55.
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2018.
Laboratory study on the potential use of recycled inert construction waste material in the substrate mix for extensive green roofs. Ecological Engineering. 61:706-714.
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2013.
Mechanical reinforcement of soil by willow roots: impacts of root properties and root failure mechanism. Soil Science Society of America Journal. 73:1276-1285. Abstract
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2009.
Material stiffness, branching pattern, and soil water matric potential affect the pullout resistance of model root systems. European Journal of Soil Science. 58:1471-1481. Abstract
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2007.
Resistance of simple plant root systems to uplift loads. Canadian Geotechnical Journal. 47:78-95. Abstract
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2010.
Bats as bushmeat: a global review. Oryx. 43(2):217-234.
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2009.
Effects of group size and personality on social foraging: the distribution of sheep across patches. Behavioural Ecology. 20(1):145-152.
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2009.
Personality and collective decision-making in foraging herbivores. Proceedings of the Royal Society of London, B. 277(1684):1093-1099.
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2010.
Social cohesion in groups of sheep: Effect of activity level, sex composition and group size. Applied Animal Behaviour Science. 112(1-2):81-93.
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2008.
Do biotic interactions shape both sides of the humped-back model of species richness in plant communities? Ecology Letters. 9(7):767-773.
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2006.
Partitioning net interactions among plants along altitudinal gradients to study community responses to climate change. Functional Ecology. 28:75-86.
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2014.
Disentangling direct and indirect effects of a legume shrub on its understorey community. Oikos. 124:1251-1262.
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2015.
Oxalate production by fungi: significance in geomycology, biodeterioration and bioremediation. Fungal Biology Reviews. 28:36-55.
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2014.
What do we know about soil biological interactions and phosphorus acquisition in plants? Soil Biology and Biochemistry. 142
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2020.
Effect of citrate on Aspergillus niger phytase adsorption and catalytic activity in soil. Geoderma. 305:346-353.
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2017.
Knowledge sharing, problem solving and professional development in a Scottish ecosystem services community of practice. Regional Environmental Change. Published online..
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2019.
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2008.
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2009.
The economic value of guaranteed water supply for irrigation under scarcity conditions. Agricultural Water Management. 113:10-18.
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2012.
Powdery scab resistance in Solanum tuberosum: an assessment of cultivar x environment effect. Plant Pathology. 61:29-36.
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2012.
Influence of plant species, tissue type, and temperature on the capacity of shiga-toxigenic escherichia coli to colonize, grow, and be internalized by plants. Applied and Environmental Microbiology. 85:ArticleNo.UNSPe00123-19.
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2019.
Influence of plant species, tissue type, and temperature on the capacity of shiga-toxigenic escherichia coli to colonize, grow, and be internalized by plants. Applied and Environmental Microbiology. 85:ArticleNo.UNSPe00123-19.
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2019.
Variability in growth responses of non-O157 EHEC isolates in leafy vegetables, sprouted seeds and soil extracts occurs at the isolate level. FEMS Microbiology Letters. 367:ArticleNo.fnaa030.
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2020.
Adopting soil organic carbon management practices in soils of varying quality: implications and perspectives in Europe. Soil and Tillage Research. 165:95-106.
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2017.
Nitrification and urease inhibitors improve rice nitrogen uptake and prevent denitrification in alkaline paddy soil. Applied Soil Ecology. 154:ArticleNo.UNSP103665.
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2020.
A holistic approach to understanding the desorption of phosphorus in soils. Environmental Science and Technology. 50:3371-3381.
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2016.
Simultaneous quantification of soil phosphorus labile pool and desorption kinetics using DGTs and 3D-DIFS. Environmental Science and Technology. 53:6718-6728.
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2019.
Opportunities for mobilizing recalcitrant phosphorus from agricultural soils: a review. Plant and Soil. 427:5-16.
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2018.
Bioprospection of natural sources of polyphenols with therapeutic potential for redox-related diseases. Antioxidants. 9:ArticleNo.789.
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2020.
Barley has two peroxisomal ABC transporters with multiple functions in beta-oxidation. Journal of Experimental Botany. 65:4833-4847.
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2014.
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2016.
Estimating fuel demand elasticities to evaluate CO2 emissions: Panel data evidence for the Lisbon Metropolitan Area. Transportation Research Part A; Policy and Practice. 67:30-46.
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2014.
Does work-life balance affect pro-environmental behaviour? Evidence for the UK using longitudinal microdata Ecological Economics. 145:170-181.
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2018.
Driving down road transport CO2 emissions in Scotland. International Journal of Sustainable Transportation. 10:906-916.
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2016.
Can analysis of a small clod of soil help to solve a murder case? Science and Justice. 59:667-677.
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2019.
Agglomeration, accessibility, and productivity: evidence for large metropolitan areas in the US. Urban Studies. 54:179-195.
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2017.
Sorption and desorption of cadmium and zinc in two tropical soils amended with sugarcane-straw-derived biochar. Journal of Soils and Sediments. 16:226-234.
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2016.
Modelling small area at-risk-of-poverty rates for the UK using the World Bank methodology and the EU-SILC. Applied Spatial Analysis and Policy. 9:97-117.
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2016.
Home telework and household commuting patterns in Great Britain. Transportation Research, Part A - Policy and Practice. 103:1-24.
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2017.
People, places and earnings differentials. Regional Studies. 561:389-403.
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2017.
Agglomeration, accessibility, and productivity: evidence for urbanized areas in the US. Urban Studies, Published online..
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2016.
Social-ecological innovation in remote mountain areas: Adaptive responses of forest-dependent communities to the challenges of a changing world. Science of the Total Environment. 613-614:894-906.
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2018.
The geographical patterns of symbiont diversity in the invasive legume Mimosa pudica can be explained by the competitiveness of its symbionts and by the host genotype. Environmental Microbiology. 16:2099-2111.
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2014.
Association mapping and genetic dissection of drought-induced canopy temperature differences in rice. Journal of Experimental Botany. 71:1614-1627.
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2020.
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2018.
Analysis of coupled axial and lateral deformation of roots in soil. International Journal for Numerical and Analytical Methods in Geomechanics. 43:684-707.
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2019.
In situ root identification through blade penetrometer testing - part 2: field testing. Geotechnique. 68:320-331.
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2018.
In situ measurement of root reinforcement using corkscrew extraction method. Canadian Geotechnical Journal. 55:1372-1390.
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2018.
New in situ techniques for measuring the properties of root-reinforced soil - laboratory evaluation. Geotechnique. 66:27-40.
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2016.
N2: A potential pitfall for bulk 2H isotope analysis of explosives and other nitrogen-rich compounds by continuous-flow isotope-ratio mass spectrometry. Rapid Communications in Mass Spectrometry. 23:2011-2016.
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2009.
Human provenancing based on stable isotope forensic intellgence. Science & Justice. 50:35-36.
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2010.
Detection of counterfeit Scotch whisky by H-2 and O-18 stable isotope analysis. Food Chemistry. 133:1070-1074.
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2012.
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2013.
Discrimination of unprocessed cotton on the basis of geographic origin using multi-element stable isotope signatures. Rapid Communications in Mass Spectrometry. 28:545-552.
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2014.
An inter-laboratory comparative study into sample preparation for both reproducible and repeatable forensic H-2 isotope analysis of human hair by continuous flow isotope ratio mass spectrometry. Rapid Communications in Mass Spectrometry. 25:3331-3338.
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2011.
Forensic isotope analysis leads to identification of a mutilated murder victim. Science and Justice. 48:153-159. Abstract
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2008.
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2015.
The Globodera pallida SPRYSEC effector GpSPRY-414-2 that suppresses plant defenses targets a regulatory component of the dynamic microtubule network. Frontiers in Plant Science. 9:ArticleNo.1019.
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2018.
Effect of DTPA on Cd solubility in soil - accumulation and subsequent toxicity to lettuce. Chemosphere. 90:1805-1810.
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2013.
Ancient manuring practices pollute arable soils at the St Kilda World Heritage Site, Scottish North Atlantic. Chemosphere. 64:1818-1828. Abstract
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2006.
First comprehensive peat depositional records for tin, lead and copper associated with the antiquity of Europe’s largest cassiterite deposits. Journal of Archaeological Science. 39:717-727.
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2012.
Codeposition of organic carbon and arsenic in Bengal Delta aquifers. Environmental Science & Technology. 40:4928-4935. Abstract
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2006.
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2010.
Operationalizing an ecosystem services-based approach using Bayesian Belief Networks: An application to a riparian buffer zone. Ecological Economics. 110:15-27.
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2015.
Significance testing after analysis of variance. Annals of Applied Biology. 162:288-289.
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2013.
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2015.
Whole-body and splanchnic amino acid metabolism in sheep during an acute endotoxin challenge. British Journal of Nutrition. 116:211-222.
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2016.
The influence of afforestation and tree species on soil methane fluxes from shallow organic soils at the UK Gisburn Forest Experiment. Soil Use and Management. 24(1):1-7.
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2008.
Impact of water table depth on forest soil methane turnover in laboratory soil cores deduced from natural abundance and tracer 13C stable isotope experiments. Isotopes in Environmental and Health Studies. 42(4):379-390.
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2006.
Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. Molecular Plant Pathology. 13:160-173.
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2012.
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2014.
Biology of the European large raspberry aphid (Amphorophora idaei); its role in virus transmission and resistance breakdown in red raspberry. Agricultural and Forest Entomology. 11:61-71. Abstract
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2009.
Raspberry viruses manipulate the behaviour of their insect vectors. Entomologia Experimentalis et Applicata. 144:56-68.
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2012.
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2009.
Modelling larval movement data from individual bioassays. Biometrical Journal. 57:485-501.
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2015.
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2013.
A high-fat diet induces rapid changes in the mouse hypothalamic proteome. Nutrition and Metabolism. 16:ArticleNo.26.
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2019.
Pharmacological perspectives on the detoxification of plant secondary metabolites: implications for ingestive behaviour of herbivores. Journal of Chemical Ecology. 32(6):1213-1228.
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2006.
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2018.
The inflammatory microenvironment in colorectal neoplasia. PLoS ONE. 6:e15366.
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2011.
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2012.
Endemic foot and mouth disease: pastoral in-herd disease dynamics in sub-Saharan Africa. Scientific Reports. 9:ArticleNo.17349.
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2019.
Seasonal regulation of petal number. Plant Physiology. 175:886-903.
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2017.
Interpretation of reflectance spectra of clay mineral-silica mixtures: implications for Martian clay mineralogy at Mawrth Vallis. Clays and Clay Minerals. 59:400-415.
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2011.
Reciprocal feeding facilitation between above- and below-ground herbivores. Biology Letters. 9
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2013.
Root herbivores drive changes to plant primary chemistry, but root loss is mitigated under elevated atmospheric CO2. Frontiers in Plant Science. 7
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2016.
Moire as a low-cost, robust, optical-technique to quantify soil surface condition. Soil and Tillage Research. 158:147-155.
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2016.
Global climate change and above-belowground insect herbivore interactions. Frontiers in Plant Science. 4:412.
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2013.
Root-soil friction: quantification provides evidence for measurable benefits for manipulation of root-tip traits. Plant Cell and Environment. 36:1085-1092.
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2013.
Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research. 104:320-323.
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2009.
Deep rooting and drought screening of cereal crops: A novel field-based method and its application.. Field Crops Research. 112:165-171. Abstract
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2009.
Scotland's natural capital asset index: tracking nature's contribution to national wellbeing. Ecological Indicators. 107:ArticleNo.105645.
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2019.
Legitimising the laird? Communicative action and the role of private landowner and community engagement in rural sustainability. Development Journal of Rural Studies. 41:23-36.
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2015.
Social capital accumulation and the role of the researcher: An example of a transdisciplinary visioning process for the future of agriculture in Europe. Environmental Science and Policy. 50:88-99.
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2015.
Modelling the hydrological impacts of rural land use change. Hydrology Research. 45:737-754.
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2014.
Environmental decision support systems (EDSS) development - challenges and best practices. Environmental Modelling and Software. 26:1389-1402.
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2011.
Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
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2012.
Sources of variation contributing to production and quality attributes of Kyrgyz cashmere in Osh and Naryn provinces: Implications for industry development. Small Ruminant Research. 84(1-3):89-99.
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2009.
Cox regression survival analysis with compositional covariates: Application to modelling mortality risk from 24-h physical activity patterns. Statistical Methods in Medical Research. :ArticleNo.UNSP0962280219864125.
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2019.
A trade off between mlo resistance to powdery mildew and increased susceptibility of barley to a newly important disease, Ramularia leaf spot. Journal of Experimental Botany. 65:1025-1037.
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2014.
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2011.
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2013.
A river water pollution model for assessment of best management practices for livestock farming. Biosystems Engineering. 99(2):292-303.
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2008.
Rubus chlorotic mottle virus, a new Sobemovirus infecting raspberry and bramble. Virus Research. 139:10-13. Abstract
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2009.
Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA. Journal of General Virology. 93:430-437.
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2012.
The complete sequence of a UK strain of Black raspberry necrosis virus. Archives of Virology. 155:1897-1899.
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2010.
Partial sequence and RT-PCR diagnostic test for the plant rhabdovirus Raspberry vein chlorosis virus. Plant Pathology. 60:462-467.
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2011.
Sequence similarities between Raspberry leaf mottle virus, Raspberry leaf spot virus and the closterovirus Raspberry mottle virus. Annals of Applied Biology. 156:439-448.
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2010.
The complete nucleotide sequence of Pelargonium leaf curl virus. Archives of Virology. 161:1415-1417.
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2016.
Novel colon-available triterpenoids identified in raspberry fruits exhibit antigenotoxic activities in vitro. Molecular Nutrition and Food Research. 61:ArticleNo.1600327.
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2017.
Effect of different cooking regimes on rhubarb polyphenols. Food Chemistry. 119:758-764.
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2010.
Anthocyanin-flavanol condensation products from blackcurrant (Ribes nigrum L.). Journal of Agricultural and Food Chemistry. 53:7878-7885. Abstract
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2005.
The inhibitory effects of berry polyphenols on digestive enzymes. Biofactors. 23:189-195. Abstract
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2005.
Phenolic-enriched foods: sources and processing for enhanced benefits. Proceedings of the Nutrition Society. 76:163-171.
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2017.
Berry polyphenols inhbit pancreatic lipase actvity in vitro. Food Chemistry. 115:193-199. Abstract
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2009.
Towards fruitful metabolomics: High throughput analyses of polyphenol composition in berries using direct infusion mass spectrometry. Journal of Chromatography B. 871:362-369. Abstract
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2008.
Anthocyanins from red cabbage - stability to simulated gastrointestinal digestion. Phytochemistry. 68:1285-1294. Abstract
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2007.