Publications list
Living off the Sun: chlorophylls, bacteriochlorophylls and rhodopsins. Photosynthetica. 56:11-43.
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2018.
Origin might matter; people matter, too. A response to the comment by Rejmanek and Simberloff, 2016. Environmental Conservation. 44:100-101.
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2017.
An Arabidopsis GRIP domain protein locates to the trans-Golgi and binds the small GTPase ARL1. Plant Journal. 44:459-470. Abstract
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2005.
Localisation and domain characterisation of Arabidopsis Golgin Candidates. Journal of Experimental Botany. 58:4373-4386. Abstract
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2007.
Holding it all together? Candidate proteins for the plant Golgi matrix Current Opinion in Plant Biology. 8:632-639. Abstract
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2005.
A systematic bayesian integration of epidemiological and genetic data. PLoS Computational Biology. 11:e1004633.
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2015.
New model diagnostics for spatio-temporal systems in epidemiology and ecology. Journal of The Royal Society Interface. 11:ArticleNo.20131093..
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2014.
Inferring influenza dynamics and control in households. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 112:9094-9099.
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2015.
Prevalence, spatial distribution and the effect of control measures on louping-ill virus in the Forest of Bowland, Lancashire. Epidemiology and Infection. 135:963-973. Abstract
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2007.
Carbonate disequilibrium in the external boundary layer of freshwater chrysophytes: implications for contaminant uptake. Environmental Science and Technology. 52:9403-9411.
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2018.
How can large-celled diatoms rapidly modulate sinking rates episodically? Journal of Experimental Botany. 71:3386-3389.
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2020.
Energy cost and putative benefits of cellular mechanisms modulating buoyancy in aflagellate marine phytoplankton. Journal of Phycology. 52:239-251.
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2016.
Energy cost of intracellular metal and metalloid detoxification in wild-type eukaryotic phytoplankton. Metallomics. 8:1097-1109.
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2016.
A novel framework for linking functional diversity of plants with other trophic levels for the quantification of ecosystem services. Journal of Vegetation Science. 24:942-948.
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2013.
Bayesian analysis of non-linear differential equation models with application to a gut microbial ecosystem. Biometrical Journal. 53:543-556.
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2011.
The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology. 257:696-703.
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2009.
An assessment of the fine sediment dynamics in an upland river system: INCA-Sed modifications and implications for fisheries. The Science of the Total Environment. 408(12):2555-2566.
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2010.
Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations. Journal of Nematology. 38:404-410. Abstract
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2006.
Diversity of endosymbiont bacteria associated with a non-filarial nematode group. Nematology. 18:615-623.
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2016.
A restoration experiment on moorland infested by Pterdium aquilinum: Plant species responses. Agriculture, Ecosystems and Environment. 119(1-2):53-59.
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2007.
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2009.
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2007.
Effects of biofertilizer on soil microbial diversity and antibiotic resistance genes. Science of the Total Environment.
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2022.
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2016.
The fetal ovary exhibits temporal sensitivity to a "real-life" mixture of environmental chemicals. Scientific Reports. 6:22279.
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2016.
Effects of maternal undernutrition during early pregnancy on apoptosis regulators in the ovine fetal ovary. Reproduction. 131(1):113-124.
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2006.
Diversity of methodologies to experiment Integrated Pest Management in arable cropping systems: analysis and reflections based on a European network. European Journal of Agronomy. 83:86-99.
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2017.
Diversity of methodologies to experiment Integrated Pest Management in arable cropping systems: analysis and reflections based on a European network. European Journal of Agronomy. 83:86-99.
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2017.
Parental differences in brood provisioning by Hen Harriers Circus cyaneus. Bird Study. 55(2):209-215.
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2008.
The complexities of agent-based modeling output analysis. Journal of Artificial Societies and Social Simulation. 18:ArticleNo.4.
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2015.
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2015.
A surface loop of the potato leafroll virus coat protein is involved in virion assembly, systemic movement and aphid transmission.. Journal of Virology. 79:1207-1214. Abstract
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2005.
GERMINATE - A generic database for integrating genotypic and phenotypic information for plant genetic resource collections. Plant Physiology. 139:619-631. Abstract
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2005.
Using spectral indices to estimate water content and GPP in sphagnum moss and other peatland vegetation. IEEE Transactions on Geoscience and Remote Sensing. Published online..
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In Press.
A quantitative polymerase chain reaction assay for the detection of Polyscytalum pustulans, the cause of skin spot disease of potato. Journal of Phytopathology. 157:154-158. Abstract
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2009.
Potential for using remote sensing to estimate carbon fluxes across Northern peatlands. Science of the Total Environment. 615:857-874.
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2018.
The use of molecular diagnostics to investigate the epidemiology of potato diseases. Australasian Plant Pathology. 34:449-455. Abstract
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2005.
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2012.
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2019.
Relative importance of seed-tuber and soilborne inoculum in causing black dot disease of potato. Plant Pathology. 59:693-702.
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2010.
Novel microsatellite markers for the analysis of Phytophthora infestans populations. Plant Pathology. 55:311-319. Abstract
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2006.
Assessing the reliability of peatland GPP measurements by remote sensing: from plot to landscape scale. Science of the Total Environment. 766:ArticleNo.142613.
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2021.
The identification and detection of Spongospora subterranea and factors affecting infection and disease. American Journal of Potato Research. 85:247-252. Abstract
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2008.
Using remote sensing to assess peatland resilience by estimating soil surface moisture and drought recovery. Science of the Total Environment. 761:ArticleNo.143312..
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2021.
A model of gross primary productivity based on satellite data suggests formerly afforested peatlands undergoing restoration regain full photosynthesis capacity after five to ten years. Journal of Environmental Management. 246:594-604.
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2019.
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2012.
Changes in carbon flux and spectral reflectance of Sphagnum mosses as a result of simulated drought. Ecohydrology. 12:ArticleNo.e2123.
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2019.
Proteomic analysis of the potato tuber life cycle. Proteomics. 6:6042-6052. Abstract
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2006.
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2007.
Comparison of tuber proteomes of potato varieties, landraces and genetically modified lines. Plant Physiology. 138:1690-1699. Abstract
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2005.
Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
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2009.
Post-transcriptional regulation FLOWERING LOCUS T modulates heat-dependent source-sink development in potato. Current Biology. 29:1614-1624.
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2019.
Regional land use efficiency and nutritional quality of protein production. Global Food Security. 26:ArticleNo.100386..
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2020.
Estimating stomatal conductance with thermal imagery. Plant Cell and Environment. 29:1508-1518.
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2006.
Selective colonization of insoluble substrates by human faecal bacteria. Environmental Microbiology. 9:667-679. Abstract
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2007.
Sampling bias misrepresents the biogeographical significance of constitutive mixotrophs across global oceans. Global Ecology and Biogeography. 28:418-428.
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2019.
Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance. Proceedings of the Royal Society B, Biological Sciences. 284:ArticleNo.1860.
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2017.
Characterization of the papilionoid-Burkholderia interaction in the Fynbos biome: the diversity and distribution of beta-rhizobia nodulating Podalyria calyptrata (Fabaceae, Podalyrieae). Systematic and Applied Microbiology. 39:41-48.
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2016.
Symbiotic diversity, specificity and distribution of rhizobia in native legumes of the Core Cape Subregion (South Africa). FEMS Microbiology Ecology. 91:1-17.
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2015.
Biogeographical patterns of legume-nodulating Burkholderia spp.: from African Fynbos to continental scales. Applied and Environmental Microbiology. 82:5099-5115.
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2016.
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2011.
Are richness patterns of common and rare species equally well explained by environmental variables? Ecography. 34(4):529-539.
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2010.
Multiscale socio-ecological networks in the age of information. PLoS ONE. 13:ArticleNo.e02056672.
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2018.
Inorganic arsenic and basal cell carcinoma in areas of Hungary, Romania, and Slovakia: A case-control study. Environmental Health Perspectives. 120:721-726.
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2012.
Impact of defoliation intensity and frequency on N uptake and mobilisation in Lolium perenne. Journal Experimental Botany. 57(4):997-1006.
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2006.
Creating contacts between replication and movement at plasmodesmata- a role for membrane contact sites in plant virus infections? Frontiers in Plant Science. 11:ArticleNo.862.
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2020.
Application of a sensitive and reproducible label-free proteomic approach to explore the proteome of individual meiotic-phase barley anthers. Frontiers in Plant Science. 10:ArticleNo.393.
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2019.
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2013.
A unified approach to model selection using the likelihood ratio test. Methods in Ecology and Evolution. 2:155-162.
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2011.
Identifying the multi-scale spatial structure of plant community determinants of an important national resource. Journal of Vegetation Science. 25:184-197.
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2014.
Assessing the importance of soil erosion to the seedbank biodiversity in arable agro-ecosystems. Progress in Physical Geography. 37:622-641.
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2013.
Using compositional and functional indicators for biodiversity conservation monitoring of semi-natural grasslands in Scotland. Biological Conservation. 175:82-93.
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2014.
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2013.
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2009.
Diagnostic accuracy of PCR for Jaagsiekte sheep retrovirus using field data from 125 Scottish sheep flocks. Veterinary Journal. 187:104-108.
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2011.
Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein. Plant Journal. 50:240-252. Abstract
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2007.
The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant-Microbe Interactions. 22:642-654. Abstract
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2009.
Symptom induction and RNA silencing suppression by the cucumber mosaic virus 2b protein. Plant Signaling & Behaviour. 5:705-708.
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2010.
Defence gene expression and phloem quality contribute to mesophyll and phloem resistance to aphids in wild barley. Journal of Experimental Botany. 70:4011-4026.
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2019.
Drought stress increases the expression of barley defence genes with negative consequences for infesting cereal aphids. Journal of Experimental Botany.
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2022.
Drought has negative consequences on aphid fitness and plant vigour: Insights from a meta-analysis. Ecology and Evolution. Published online..
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2021.
The price of protection: a defensive endosymbiont impairs nymph growth in the bird cherry-oat aphid, Rhopalosiphum padi. Insect Science. Published online..
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2019.
A fitness cost resulting from Hamiltonella defensa infection is associated with altered probing and feeding behaviour in Rhopalosiphum padi. Journal of Experimental Biology. 223:ArticleNo.jeb207936..
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2020.
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2020.
Biological nitrification inhibition by sorghum root exudates impacts ammonia-oxidizing bacteria but not ammonia-oxidizing archaea. Biology and Fertility of Soils. 57:399-407.
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2021.
Detection of nitrogen deficiency in potato plants using gene expression markers. American Journal of Potato Research. 87(1):50-59.
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2010.
Soil nitrogen availability alters rhizodeposition carbon flux into the soil microbial community. Journal of Soils and Sediments. 16:1472-1480.
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2016.
Hierarchical Bayesian calibration of nitrous oxide (N2O) and nitrogen monoxide (NO) flux module of an agro-ecosystem model: ECOSSE. Ecological Modelling. 316:14-27.
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2015.
yy Modelling the seasonality of Lyme disease risk and the potential impacts of a warming climate within the heterogeneous landscapes of Scotland. Journal of the Royal Society Interface. 13:ArticleNo.20160140.
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2016.
Modelling the seasonality of Lyme disease risk and the potential impacts of a warming climate within the heterogeneous landscapes of Scotland. Journal of the Royal Society Interface. 13:ArticleNo.20160140.
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2016.
A SPE-HPLC-MSMS method for the simultaneous determination of prioritised pharmaceuticals and EDCs with high environmental risk potential in freshwater. Journal of Environmental Science. 100:18-27.
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2021.
Estimating agro-ecosystem carbon balance of northern Japan, and comparing the change in carbon stock by soil inventory and net biome productivity. Science of the Total Environment. 554:293-302.
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2016.
Hierarchical Bayesian model approach for estimating soil CO2 flux: a case study in central Hokkaido, Japan. Soil Science and Plant Nutrition. 61:116-132.
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2015.
Utilizing low-cost natural waste for the removal of pharmaceuticals from water: Mechanisms, isotherms and kinetics at low concentrations. Journal of Cleaner Production. 227:88-97.
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2019.
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2019.
Comparative genome and transcriptome analysis unravels key factors of nitrogen use efficiency in Brassica napus L. Plant Cell and Environment. 43:712-731.
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2020.
A novel cleavage site within the potato leafroll virus P1 polyprotein. Journal of General Virology. 88:1620-1623. Abstract
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2007.
Nitrification and nitrifiers in acidic soils. Soil Biology and Biochemistry. 116:290-301.
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2018.
Efficient multiplex simple sequence repeat genotyping of the oomycete plant pathogen Phytophthora infestans. Journal of Microbiological Methods. 92:316-322.
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2013.
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2011.
Group size affects foraging and vigilance in migratory Tibetan antelope. Behavioural Processes. 76(3):192-197.
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2007.
Modelling the seismic performance of root-reinforced slopes using the finite-element method. Geotechnique. 70:375-391.
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2020.
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2017.
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2017.
Phosphatase-mediated bioprecipitation of lead by soil fungi. Environmental Microbiology. 18:219-231.
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2016.
Dynamics of microbial biomass and community composition after short-term water status change in Chinese paddy soils. Environmental Science and Pollution Research. 25:2932-2941.
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2018.
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2007.
Algae influence the hydrophysical parameters of a sandy soil. Catena. 108:58-68.
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2013.
Vegetation impact on the hydrology of an aeolian sandy soil in a continental climate. Ecohydrology. 3:413-420.
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2010.
Just the tonic! Legume biorefining for alcohol has the potential to reduce Europe’s protein deficit and mitigate climate change. Environment International. 130:ArticleNo.104870.
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2019.
Data for life cycle assessment of legume biorefining for alcohol. Data in Brief. 25:ArticleNo.UNSP104242.
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2019.
Can you be bothered? The role of participant motivation in the valuation of species conservation measures Journal of Environmental Planning and Management. 52(4):519-534.
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2009.
Fine mapping of a major QTL for awn length in barley using a multiparent mapping population. Theoretical and Applied Genetics. 130:269-281.
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2017.
Effector gene birth in plant parasitic nematodes: Neofunctionalization of a housekeeping glutathione synthetase gene. PLoS Genetics. 14:ArticleNo.e1007310.
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2018.
Probabilistic approach to the identification of input variables to estimate hydraulic conductivity. Soil Science Society of America Journal. 72(1):16-24.
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2008.
Assessing changes in carbon stocks of Scottish soils: lessons learnt. Earth and Environmental Science. 25:ArticleNo.01201.
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2015.
Changes in the carbon concentrations and other soil properties of some Scottish agricultural soils: Evidence from a resampling campaign. Soil Use and Management. 36:299-307.
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2020.
The potential for Scottish cultivated top soils to lose or gain soil organic carbon. Soil Use and Management. 29:39-47.
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2013.
Spatial modelling of nitrous oxide emissions at the national scale by upscaling using soil, climate and land use information. Global Change Biology. 15:2321-2332.
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2009.
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2018.
Magnetic ligand fishing using immobolized DPP-IV for identification of antidiabetic ligands in lingonberry extract. PLOS ONE. 16:ArticleNo.e0247329.
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2021.
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2012.
Glasshouse vs field experiments: do they yield ecologically similar results for assessing N impacts on peat mosses? New Phytologist. 195:408-418.
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2012.
Climatic modifiers of the response to nitrogen deposition in peat-forming Sphagnum mosses: a meta-analysis. New Phytologist. 191:496-507.
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2011.
Effect of composting on the conjugative transmission of sulfonamide resistence and sulfonamide-resistant baterial population. Journal of Cleaner Production. 285:ArticleNo.125483.
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2021.
Simultaneous reductions in antibiotics and heavy metal pollution during manure composting. Science of the Total Environment. 788:ArticleNo.147830.
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2021.
Effects of manure and mineral fertilization strategies on soil antibiotic resistance gene levels and microbial community in a paddy-upland rotation system. Environmental Pollution. 211:332-337.
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2016.
A compositional shift in the soil microbiome induced by tetracycline, sulfamonomethoxine and ciprofloxacin entering a plant-soil system. Environmental Pollution. 212:440-448.
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2016.
Fate of tetracycline and sulfonamide resistance genes in a grassland soil amended with different organic fertilizers. Ecotoxicology and Environmental Safety. 170:39-46.
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2019.
RLP/K enrichment sequencing; a novel method to identify receptor-like protein (RLP) and receptor-like kinase (RLK)genes. New Phytologist. Published online..
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2020.
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2020.
Effects of manure and mineral fertilization strategies on soil antibiotic resistance gene levels and microbial community in a paddy-upland rotation system. Environmental Pollution. 211:332-337.
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2016.
Hydropedology: synergistic integration of pedology and hydrology. Water Resources Research. 42(5):W05301.
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2006.
Genetic diversity of the subterranean Gansu zokor in a semi-natural landscape. Journal of Zoology. 275(2):153-159.
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2008.
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2016.
Genetic variation and molecular evolution of endangered Kozlov's pika (Ochotona Koslowi Buchner) based on mitochondrial cytochrome B gene. Polish Journal of Ecology. 58(3):563-568.
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2010.
Exposure to pastures fertilised with sewage sludge disrupts bone tissue homeostasis in sheep. The Science of the Total Environment. 407(7):2200-2208.
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2009.
Pregnant ewes exposed to multiple endocrine disrupting pollutants through sewage sludge-fertilised pasture show an anti-estrogenic effect in their trabecular bone. The Science of the Total Environment. 408:2340-2346.
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2010.
Now you see it, now you don't: The challenge of detecting, monitoring and conserving ectomycorrhizal fungi. Fungal Ecology. 5:633-640.
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2012.
A PCR-based method for detecting the mycelia of stipitate hydnoid fungi in soil. Journal of Microbiological Methods. 75(1):40-46.
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2008.
Spatial distribution of sporocarps of stipitate hydnoid fungi and their belowground mycelium. FEMS Microbiology Ecology. 69(3):344-352.
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2009.
Biotic modifiers, environmental modulation and species distribution models. Journal of Biogeography. 39:2179-2190.
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2012.
Editorial. Journal of Biogeography. 46:1625-1626.
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2019.
Unraveling the structure of viral replication complexes at super-resolution. Frontiers in Plant Science. 4
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2013.
Using agent-based modelling to simulate social-ecological systems across scales. Geoinformatica. 23:269-298.
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2019.
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2014.
Use of a novel camera trapping approach to measure small mammal responses to peatland restoration. European Journal of Wildlife Research. 67:ArticleNo.12.
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2021.
A field assessment of the success of moorland restoration in the rehabilitation of whole plant assemblages. Applied Vegetation Science. 9(2):295-306.
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2006.
Isolation of habitat patches limits colonisation by moorland Hemiptera. Journal of Insect Conservation. 13:29-36.
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2009.
The response of plant and insect assemblages to the loss of Calluna vulgaris from upland vegetation. Biological Conservation. 128(3):335-345.
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2006.
A habitat suitability model for the narrow-headed ant formica exsecta evaluated against independent data. Insect Conservation and Diversity. 1(2):108-113.
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2008.
Moorland restoration aids the reassembly of associated phytophagous insects. Biological Conservation. 132(3):395-404.
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2006.
Science into practice - how can fundamental science contribute to better management of grasslands for invertebrates? Insect Conservation and Diversity. 5:1-8.
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2012.
Grazing impacts on moth diversity and abundance on a Scottish upland estate. Insect Conservation and Diversity. 1:151-160.
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2008.
Long-term trends in restored moorland vegetation assemblages. Community Ecology.. 15:104-112.
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2014.
Grazing impacts on Auchenorrhyncha diversity and abundance on a Scottish upland estate. Insect Conservation and Diversity. 5:67-74.
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2012.
Invertebrate species at risk from ash dieback in the UK. Journal of Insect Conservation. 19:75-85.
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2015.
Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Molecular Biology and Evolution. 22:659-672. Abstract
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2005.
Counter urbanisation, planning and house prices: an analysis of the Aberdeen housing market area, 1984 - 2010. Town Planning Review. 84:81-105.
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2013.
Global wheat production with 1.5 and 2.0 degrees C above pre-industrial warming. Global Change Biology. 25:1428-1444.
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2019.
Highly parallel gene-to-BAC addressing using microarrays. Biotechniques. 50:165-174.
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2011.
Yield loss of oilseed rape (Brassica napus L.) under nitrogen deficiency is associated with under-regulation of plant population density. European Journal of Agronomy. 103:80-89.
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2019.
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2014.
Kinetic constraints for formation of steady states in biochemical networks. Biophysical Journal. 88:3212-3223. Abstract
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2005.
Pretreatment is an important method for increasing the conversion efficiency of rice straw by black soldier fly larvae based on the function of gut microorganisms. Science of the Total Environment. 762:ArticleNo.144118.
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2021.
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2008.
Partitioning of soil phosphorus among arbuscular and ectomycorrhizal trees in tropical and subtropical forests. Ecology Letters. 21:713-723.
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2018.
Burkholderia and Cupriavidus spp. are the preferred symbionts of Mimosa spp. in Southern China. FEMS Microbiology Ecology. 80:417-426.
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2012.
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2014.
Collapse of single stable states via a fractal attraction basin: analysis of a representative metabolic network. Proceedings of the Royal Society of London Series A. 461:2327-2338. Abstract
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2005.
Impacts of residence time during storage on potential of water saving for grey water recycling system. Water Research. 44(1):267-277.
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2010.
Storage nitrogen co-ordinates leaf expansion and photosynthetic capacity in winter oilseed rape. Journal of Experimental Botany. 69:2995-3007.
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2018.
A genetic screen for plant mutants with altered nodulation phenotypes in response to rhizobial glycan mutants. New Phytologist. 220:526-538.
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2018.
Dissipation and maintenance of stable states in an enzymatic system: analysis and simulation. Biophysical Chemistry. 120:207-214. Abstract
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2006.
Biomass partitioning and rhizosphere responses of maize and faba bean to phosphorus deficiency. Crop and Pasture Science. 67:847-856.
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2016.
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2005.
Farmers' uptake of animal health and welfare technological innovations. Implications for animal health policies. Frontiers in Veterinary Science. 6:ArticleNo.410.
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2019.
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2018.
A longitudinal study of escalation in crime seriousness. Journal of Quantitative Criminology. 27:175-196.
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2011.
Farmers' uptake of animal health and welfare technological innovations. Implications for animal health policies. Frontiers in Veterinary Science. 6:ArticleNo.410.
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2019.
Protein energy malnutrition during early gestation in sheep blunts fetal renal vascular and nephron development and compromises adult renal function. Journal of Physiology. 590:377-393.
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2012.
Planting density influence on fibrous root reinforcement of soils. Ecological Engineering. 36:276-284. Abstract
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2010.
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2015.
Biomechanics of nodal, seminal and lateral roots of barley: effects of diameter, waterlogging and mechanical impedance. Plant and Soil. 370:407-418.
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2013.
Glucose uptake by the brain on chronic high-protein weight-loss diets with either moderate or low amounts of carbohydrate. British Journal of Nutrition. 111:586-597.
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2014.
Impact of high protein diets with either moderate or low carbohydrate on weight loss, body composition, blood pressure and glucose tolerance in rats. British Journal of Nutrition. 97:1099-1108. Abstract
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2007.
Responses in gut hormones and hunger to diets with either high protein or a mixture of protein plus free amino acids supplied under weight-loss conditions. British Journal of Nutrition. 113:1254-1270.
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2015.
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2013.
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2011.
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2012.
The neglected season: warmer autumns counteract harsher winters and promote growth in Arctic reindeer. Global Change Biology. 27:993-1002.
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2020.
Behavioral buffering of extreme weather events in a high- Arctic herbivore. Ecosphere. 7:ArticleNo.e01374..
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2016.
Activity pattern of arctic reindeer in a predator-free environment - no need to keep a daily rhythm. Oecologia. 152(4):617-624.
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2007.
Behavioral buffering of extreme weather events in a high- Arctic herbivore. Ecosphere. 7:1-13.
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2016.
Testing five hypotheses of sexual segregation in an arctic ungulate. Journal of Animal Ecology. 75(2):485-496.
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2006.
Antler growth as a cost of reproduction in female reindeer. Oecolgia. 189:601-609.
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2019.
Regulation of hepatic glucose production and AMPK by AICAR but not by metformin depends on drug uptake through the equilibrative nucleoside transporter 1 (ENT1). Diabetes, Obesity and Metabolism. 20:2748-2758.
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2018.
Cellular responses to the metal-binding properties of metformin. Diabetes. 61:1423-1433.
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2012.
Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV. Molecular Plant-Microbe Interactions. 22:630-641.
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2009.
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2006.