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Found 5892 results

2013
Critchley CNR, Mitchell RJ, Rose RJ, Griffiths JB, Jackson E, Scott H, Davies OD.  2013.  Re-establishment of Calluna vulgaris (L.) Hull in an eight-year grazing experiment on upland acid grassland. Journal of Nature Conservation. 21:22-30.
McKenzie SW, Vanbergen AJ, Hails RS, Jones TH, Johnson SN.  2013.  Reciprocal feeding facilitation between above- and below-ground herbivores. Biology Letters. 9
Matthews KB, Buchan K, Miller DG, Towers W.  2013.  Reforming the CAP - with area-based Pillar 1 payments, who wins and who loses? Land Use Policy. 31:209-222.
Jarvis S, Woodward S, Alexander IJ, Taylor AFS.  2013.  Regional scale gradients of climate and nitrogen deposition drive variation in ectomycorrhizal fungal communities associated with native Scots pine. Global Change Biology. 19:1688-1696.
Poggio L, Gimona A, Brewer M.  2013.  Regional scale mapping of soil properties and their uncertainty with a large number of satellite-derived covariates. Geoderma. 209-210:1-14.
Speed JDM, Austrheim G, Hester AJ, Solberg EJ, Tremblay JP.  2013.  Regional-scale alteration of clear-cut forest regeneration caused by moose browsing. Forest Ecology and Management. 289:289-299.
Hunter LJR, Westwood JH, Heath G, Macaulay K, Smith AG, MacFarlane SA, Palukaitis P, Carr JP.  2013.  Regulation of RNA-dependent RNA polymerase 1 and isochorismate synthase gene expression in arabidopsis. PLoS ONE. 8:e66530.
Coutinho BG, Mitter B, Talbi C, Sessitsch A, Bedmar E, Halliday N, James EK, Camara M, Venturi V.  2013.  Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. Applied and Environmental Microbiology. 79:4421-4432.
Kammer PM, Schoeb C, Eberhard G, Gallina R, Meyer R, Tschanz C.  2013.  The relationship between soil water storage capacity and plant species diversity in high alpine vegetation. Plant Ecology and Diversity. 6:457-466.
Brierley JL, Sullivan L, Hilton AJ, Wale SJ, Hilton AJ, Kielebrink DT, Lees AK.  2013.  Relationship between Spongospora subterranea f.sp. subterranea soil inoculum level, host resistance and powdery scab on potato tubers in the field. Plant Pathology. 62:413-420.
Gushchin VA, Andreev DE, Taliansky M, MacFarlane SA, Solovyev AG, Morozov SY.  2013.  Replacement of amino acid in the ORF6 protein of tobacco mosaic virus prevents the formation of a complex with eEF1A and the cooperative binding to nucleic acids in vitro. Proceedings of the Russian Academy of Sciences. 448:1-5.
Tilsner J, Linnik O, Louveaux M, Roberts IM, Chapman SN, Oparka KJ.  2013.  Replication and trafficking of a plant virus are coupled at the entrances of plasmodesmata. Journal of Cell Biology. 201:981-995.
Jupe F, Witek K, Verweij W, Sliwka J, Pritchard L, Etherington GJ, MacLean D, Cock PJ, Leggett RM, Bryan GJ et al..  2013.  Resistance gene enrichment sequencing (RenSeq) enables reannotation of the NB-LRR gene family from sequenced plant genomes and rapid mapping of resistance loci in segregating populations. Plant Journal. 76:530-544.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2013.  The response of alpine Salix shrubs to long-term experimental browsing varies with elevation and herbivore density. Arctic Antarctic and Alpine Research. 45:584-593.
Mikusinska A, Persson T, Taylor AFS, Ekblad A.  2013.  Response of ectomycorrhizal extramatrical mycelium production and isotopic composition to in-growth bag size and soil fauna. Soil Biology and Biochemistry. 66:154-162.
Bennett AE, Strauss SY.  2013.  Response to soil biota by native, introduced non-pest, and pest grass species: is responsiveness a mechanism for invasion? Biological Invasions. 15:1343-1353.
Deng WN, Iannetta PPM, Hallett PD, Toorop PE, Squire GR, Jeng DS.  2013.  The rheological properties of the seed coat mucilage of Capsella bursa-pastoris L. Medik. (shepherd's purse). Biorheology. 50:57-67.
Duckett D, Busby J.  2013.  Risk amplification as social attribution. Risk Management. 15:132-153.
Raven JA.  2013.  RNA function and phosphorus use by photosynthetic organisms. Frontiers in Plant Science, 4. Published online.. 4
Lyons R, Iwase A, Gansewig T, Sherstnev A, Duc C, Barton GJ, Hanada K, Higuchi-Takeuchi M, Matsui M, Sugimoto K et al..  2013.  The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation. Scientific Reports. 3
Wang MH, Wang L, Jiang N, Jia TY, Luo ZW.  2013.  A robust and efficient statistical method for genetic association studies using case and control samples from multiple cohorts. BMC Genomics. 14:Article88.
Smith P, Ashmore MR, Black HIJ, Burgess PJ, Evans CD, Quine TA, Thomson AM, Hicks K, Orr HG.  2013.  The role of ecosystems and their management in regulating climate, and soil, water and air quality. Journal of Applied Ecology. 50:812-829.
Smith HM, Wall G, Blackstock KL.  2013.  The role of map-based environmental information in supporting integration between river basin planning and spatial planning. Environmental Science and Policy. 30:81-89.
Street LE, Subke JA, Sommerkorn M, Sloan V, Ducrotoy H, Phoenix GK, Williams M.  2013.  The role of mosses in carbon uptake and partitioning in arctic vegetation. New Phytologist. 199:163-175.
Pasare SA, Ducreux LJM, Morris WL, Campbell R, Sharma SK, Roumeliotis E, Kohlen W, van der Krol S, Bramley PM, Roberts AG et al..  2013.  The role of the potato (Solanum tuberosum L.) CCD8 gene in stolon and tuber development. New Phytologist. 198:1108-1120.
Schmidt S, Gregory PJ, Grinev DV, Bengough AG.  2013.  Root elongation rate is correlated with the length of the bare root apex of maize and lupin roots despite contrasting responses of root growth to compact and dry soils. Plant and Soil. 372:609-618.
Haling RE, Brown LK, Bengough AG, Young IM, Hallett PD, White PJ, George TS.  2013.  Root hairs improve root penetration, root-soil contact, and phosphorus acquisition in soils of different strength. Journal of Experimental Botany. 64:3711-3721.
McKenzie BM, Mullins CE, Tisdall JM, Bengough AG.  2013.  Root-soil friction: quantification provides evidence for measurable benefits for manipulation of root-tip traits. Plant Cell and Environment. 36:1085-1092.
Wang X, Richards J, Gross T, Druka A, Kleinhofs A, Steffenson B, Acevedo M, Brueggeman R.  2013.  The rpg4-mediated resistance to wheat stem rust (Puccinia graminis) in barley (Hordeum vulgare) requires Rpg5 gene, a second NBS-LRR gene, and an actin depolymerization factor. Molecular Plant-Microbe Interactions. 26:407-418.
Raven JA.  2013.  Rubisco: still the most abundant protein of Earth? New Phytologist. 198:1-3.
McLellan H, Boevink PC, Armstrong MR, Pritchard L, Gomez S, Morales J, Whisson SC, Beynon JL, Birch PRJ.  2013.  An RxLR effector from Phytophthora infestans prevents re-localisation of two plant NAC transcription factors from the endoplasmic reticulum to the nucleus. PLoS Pathogens. 9:e1003670.
Feliciano D, Hunter C, Slee RW, Smith P.  2013.  Selecting land-based mitigation practices to reduce GHG emissions from the rural land use sector: a case study of North East Scotland. Journal of Environmental Management. 120:93-104.
Juedtz K, Aberdein N, Stewart D, McDougall GJ.  2013.  Sequential extraction of black currant residues produce anthocyanin-rich extracts containing anthocyanin dimers. Journal of Berry Research. 3:53-64.
Hodgson JC, Dagleish MP, Gibbard L, Bayne CW, Finlayson J, Moon GM, Nath M.  2013.  Seven strains of mice as potential models of bovine pasteurellosis following intranasal challenge with a bovine pneumonic strain of Pasteurella multocida A:3; comparisons of disease and pathological outcomes. Research in Veterinary Science. 94:634-640.
Pakeman RJ, Eastwood A.  2013.  Shifts in functional traits and functional diversity between vegetation and seedbank. Journal of Vegetation Science. 24:865-876.
Rhind SM, Kyle CE, Ruffie H, Calmettes E, Osprey M, Zhang ZL, Hamilton D, McKenzie C.  2013.  Short and long term temporal changes in soil concentrations of selected endocrine disrupting compounds (EDCs) following single or multiple applications of sewage sludge to pastures. Environmental Pollution. 181:262-270.
Foito A, Byrne SL, Hackett CA, Hancock RD, Stewart D, Barth S.  2013.  Short-term response in leaf metabolism of perennial ryegrass (Lolium perenne) to alterations in nitrogen supply. Metabolomics. 9:145-156.
McNicol J.  2013.  Significance testing after analysis of variance. Annals of Applied Biology. 162:288-289.
Palacio S, Hester AJ, Maestro M, Millard P.  2013.  Simulated browsing affects leaf shedding phenology and litter quality of oak and birch saplings. Tree Physiology. 33:438-445.
Gushchin VA, Andreev DE, Taliansky ME, MacFarlane SE, Solovyev AG, Morozov SY.  2013.  Single amino acid substitution in the tobacco mosaic virus ORF6 protein suppresses formation of complex with eEF1A and cooperative nucleic acids binding in vitro. Doklady Biochemistry and Biophysics. 448:1-4.
Podevin N, Davies HV, Hartung F, Nogue F, Casacuberta JM.  2013.  Site-directed nucleases, a paradigm shift in predictable, knowledge-based plant breeding. Trends in Biotechnology. 31:373-383.
Streitner C, Simpson CG, Shaw P, Danisman S, Brown JWS, Staiger D.  2013.  Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana. Plant Signalling and Behaviour. 8:e24638.
Goddard PJ.  2013.  Small ruminant welfare: Levelling the playing field or raising the bar - a European perspective. Small Ruminant Research. 110:108-111.
Cheke RA, Adranyi E, Cox JR, Farman DI, Magoma RN, Mbereki C, McWilliam AN, Mtobesya BN, van der Walte E.  2013.  Soil contamination and persistence of pollutants following organophosphate sprays and explosions to control red-billed quelea (Quelea quelea). Pest Management Science. 69:386-396.
Paterson E, Sim A.  2013.  Soil-specific response functions of organic matter mineralization to the availability of labile carbon. Global Change Biology. 19:1562-1571.
Filatova T, Verburg PH, Parker DC, Stannard CA.  2013.  Spatial agent-based models for socio-ecological systems: challenges and prospects. Environmental Modelling and Software. 45:1-7.
Winder L, Alexander CJ, Woolley C, Perry JN, Holland JM.  2013.  The spatial distribution of canopy-resident and ground-resident cereal aphids (Sitobion avenae and Metopolophium dirhodum) in winter wheat. Arthropod-Plant Interactions. 7:21-32.
Salmela MJ, Cavers S, Cottrell JE, Iason GR, Ennos RA.  2013.  Spring phenology shows genetic variation among and within populations in seedlings of Scots pine (Pinus sylvestris L.) in the Scotish Highlands. Plant Ecology and Diversity. 6:523-536.
Bragard C, Caciagli P, Lemaire O, Lopez-Moya JJ, MacFarlane S, Peters D, Susi P, Torrance L.  2013.  Status and prospects of plant virus control through interference with vector transmission. Annual Review of Phytopathology, 51,177-201.. 51:177-201.
Geddes A, Elston DA, Hodgson MEA, Birnie RV.  2013.  Stochastic model-based methods for handling uncertainty in areal interpolation. International Journal of Geographical Information Science. 27:785-803.
Tondelli A, Xu X, Moragues M, Sharma R, Schnaithmann F, Ingvardsen C, Manninen O, Comadran J, Russell J, Waugh R et al..  2013.  Structural and temporal variation in genetic diversity of European spring two-row barley cultivars and association mapping of quantitative traits. Plant Genome. 6
Askarianzadeh A, Birch ANE, Ramsay G, Minaeimoghadam M.  2013.  Study of wild Solanum species to identify sources of resistance against the green peach aphid, Myzus persicae (Sulzer). American Journal of Potato Research.. 90:66-70.
Pasare S, Wright K, Campbell R, Morris WL, Ducreux LJM, Chapman S, Bramley PM, Fraser PD, Roberts AG, Taylor MA.  2013.  The sub-cellular localisation of the potato (Solanum tuberosum L.) carotenoid biosynthetic enzymes, CrtRb2 and PSY2. Protoplasma. 250:1381-1392.
O'Malley-James JT, Greaves JS, Raven JA, Cockell CS.  2013.  Swansong biospheres: refuges for life and novel microbial biospheres on terrestrial planets near the end of their habitable lifetimes. International Journal of Astrobiology. 12:99-112.
Bender FS, Plantenga F, Neftel A, Jocher M, Oberholzer HR, Kohl L, Giles M, Daniell T, Van der Heijden MGA.  2013.  Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. ISME Journal. 8:1336-1345.
Sargent F, Davidson FA, Kelly CL, Binny R, Christodoulides N, Gibson D, Johansson E, Kozyrska K, Lado LL, MacCallum J et al..  2013.  A synthetic system for expression of components of a bacterial microcompartment. Microbiology-SGM. 159:2427-2436.
Demars BOL, Manson JR.  2013.  Temperature dependence of stream aeration coefficients and the effect of water turbulence: a critical review. Water Research. 47:1-15.
Zheng Y, Byg A, Thorsen BJ, Strange N.  2013.  A temporal dimension of household vulnerability in three rural communities in Lijiang, China. Human Ecology. Published online.
Biere A, Bennett AE.  2013.  Three-way interactions between plants, microbes and insects. Functional Ecology. 27:567-573.
Dresboll DB, Thorup-Kristensen K, McKenzie BM, Dupuy LX, Bengough AG.  2013.  Timelapse scanning reveals spatial variation in tomato (Solanum lycopersicum L.) root elongation rates during partial waterlogging. Plant and Soil. 369:467-477.
Jones JT, Haegeman A, Danchin EGJ, Gaur HS, Helder J, Jones MGK, Kikuchi T, Manzanilla-Lopez R, Palomares-Rius JE, Wesemael WML et al..  2013.  Top 10 plant parasitic nematodes in molecular plant pathology. Molecular Plant Pathology. 14:946-961.
Rodriguez PA, Bos JIB.  2013.  Toward understanding the role of aphid effectors in plant infestation. Molecular Plant Microbe Interactions. 26:25-30.
Koljalg U, Nilsson RH, Abarenkov K, Tedersoo L, Taylor AFS, Bahram M, Bates ST, Bruns TD, Bengtsson-Palme J, Callaghan TM et al..  2013.  Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology. 22:5271-5277.
Duc C, Sherstnev A, Cole C, Barton GJ, Simpson GG.  2013.  Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA. PLoS Genetics. 9:e1003867.
Wells B, Innocent GT, Eckersall PD, McCulloch E, Nisbet AJ, Burgess STG.  2013.  Two major ruminant acute phase proteins, haptoglobin and serum amyloid A, as serum biomarkers during active sheep scab infestation. Veterinary Research. 44:103.
Lu JK, Kang LH, Sprent JI, Xu DP, He XH.  2013.  Two-way transfer of nitrogen between Dalbergia odorifera and its hemiparasite Santalum album is enhanced when the host is effectively nodulated and fixing nitrogen. Tree Physiology. 33:464-474.
Mosher S, Seybold H, Rodriguez PA, Stahl M, Davies KA, Davaratne S, Morillo SA, Wierzba M, Favery B, Keller H et al..  2013.  The tyrosine-sulfated peptide receptors PSKR1 and PST1R modify the immunity of Arabidopsis to biotrophic and necrotrophic pathogens in an antagonistic manner. The Plant Journal. 73:469-482.
Demars BOL.  2013.  Uncertainties in biotic indicators and a corrigendum to Ponader et al. (2007): Implications for biomonitoring. Ecological Indicators..
Babikova Z, Gilbert L, Bruce TJA, Birkett M, Caulfield JC, Woodcock C, Pickett JA, Johnson D.  2013.  Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack. Ecology Letters. 16:835-843.
Baxter C, Rowan JS, McKenzie BM, Neilson R.  2013.  Understanding soil erosion impacts in temperate agroecosystems: bridging the gap between geomorphology and soil ecology using nematodes as a model organism. Biogeosciences. 10:7133-7145.
Peukert S, Bol R, Roberts W, Macleod CJA, Murray PJ, Dixon ER, Brazier RE.  2013.  Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments (vol 26, pg 2413, 2012). (Correction). Rapid Communications in Mass Spectrometry. 27:284.
Hackett SC, Karley AJ, Bennett AE.  2013.  Unpredicted impacts of insect endosymbionts on interactions between soil organisms, plants and aphids. Proceedings of the Royal Society B. 280:1471-2954.
Linnik O, Liesche J, Tilsner J, Oparka KJ.  2013.  Unraveling the structure of viral replication complexes at super-resolution. Frontiers in Plant Science. 4
Kattas GD, Perez-Barberia FJ, Small M, Xu XK, Walker DM.  2013.  Unravelling complexity in inter-species interaction through nonlinear dynamical models. Acta Ethologica. 16:21-30.
Davies AL, Bryce R, Redpath SM.  2013.  Use of multicriteria decision analysis to address conservation conflicts. Conservation Biology. 27:936-944.
Thuenemann EC, Lenzi P, Love AJ, Taliansky M, Becares M, Zuniga S, Enjuanes L, Zahmanova GG, Minkov IN, Matic S et al..  2013.  The use of transient expression systems for the rapid production of virus-like particles in plants. Current Pharmaceutical Design. 19:5564-5573.
Storkey J, Brooks D, Haughton A, Hawes C, Smith BM, Holland JM.  2013.  Using functional traits to quantify the value of plant communities to invertebrate ecosystem service providers in arable landscapes. Journal of Ecology. 101:38-46.
Pakeman RJ, Stockan J.  2013.  Using plant functional traits as a link between land use and bee foraging abundance. Acta Oecologia. 50:32-39.
Milne I, Stephen G, Bayer MM, Cock PJA, Pritchard L, Cardle L, Shaw P, Marshall DF.  2013.  Using Tablet for visual exploration of second generation sequencing data. Briefings in Bioinformatics. 14:193-202.
Palarea-Albaladejo J, Martin-Fernandez JA.  2013.  Values below detection limit in compositional chemical data. Analytica Chimica Acta. 764:32-43.
Schoeb C, Armas C, Guler M, Prieto I, Pugnaire FI.  2013.  Variability in functional traits mediates plant interactions along stress gradients. Journal of Ecology. 101:753-762.
Van Kuren AT, Boag B, Hruban E, Cattadori IM.  2013.  Variability in the intensity of nematode larvae from gastrointestinal tissues of a natural herbivore. Parasitology. 140:632-640.
Houston K, McKim S, Comadran J, Bonar N, Druka I, Uzrek E, Cirillo E, Guzy-Wrobelska J, Collins N, Halpin C et al..  2013.  Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence. Proceedings of the National Academy of Sciences of the USA. 110:16675-16680.
Martin RR, MacFarlane S, Sabanadzovic S, Quito D, Poudel B, Tzanetakis IE.  2013.  Viruses and virus diseases of Rubus. Plant Disease. 97:168-182.
Kerchev PI, Karpinska B, Morris JA, Hussain A, Verrall SR, Hedley PE, Fenton B, Foyer CH, Hancock RD.  2013.  Vitamin C and the abscisic acid-insensitive 4 transcription factor are important determinants of aphid resistance in arabidopsis. Antioxidants and Redox Signalling. 18:2091-2105.
Haggarty P, Campbell DM, Knox S, Horgan GW, Hoad G, Boulton E, McNeill G, Wallace AM.  2013.  Vitamin D in pregnancy at high latitude in Scotland. British Journal of Nutrition. 109:898-905.
Marselle MR, Irvine KN, Warber SL.  2013.  Walking for well-being: are group walks in certain types of natural environments better for well-being than group walks in urban environments? International Journal of Environmental Research and Public Health. 10:5603-5628.
Koichi K, Cottrell A, Sangha KK, Gordon IJ.  2013.  What determines the acceptability of wildlife control methods? A case of feral pig management in the wet tropics world heritage area, Australia Human Dimensions of Wildlife. 18:97-108.
Dawson IK, Guariguata MR, Loo J, Weber JC, Lengkeek A, Bush D, Cornelius J, Guarino L, Kindt R, Orwa C et al..  2013.  What is the relevance of smallholders' agroforestry systems for conserving tropical tree species and genetic diversity in circa situm, in situ and ex situ settings? A review Biodiversity and Conservation. 22:301-324.
Skelsey P, With KA, Garrett KA.  2013.  Why dispersal should be maximised at intermediate scales of heterogeneity. Theoretical Ecology. 6:203-211.
Sing L, Towers W, Ellis J.  2013.  Woodland expansion in Scotland: an assessment of the opportunities and constraints using GIS. Scottish Forestry. 67
2012
Jackson G, Macdonald LM, Brewer MJ, Dawson LA.  2012.  A conceptual framework for expert opinions in forensic geoscience. Science and Justice.
Orskov ER.  2012.  Small scale farmers in Asia with an emphasis on livestock. Academic Journal of Kanchanaburi Rajabhat University, August 2012..
Sutherland LA, Gabriel D, Hathaway-Jenkins L, Pascual U, Schmutz U, Rigby D, Godwin R, Sait S, Sakrabani R, Kunin B et al..  2012.  The 'neighbourhood effect': a multidisciplinary assessment of the case for farmer co-ordination in agri-environmental programmes. Land Use Policy. 29:502-512.
Foyer CH, Kerchev P, Hancock RD.  2012.  The ABA-Insensitive-4 (AB14) transcription factor links redox, hormone and sugar signalling pathways (Review). Plant Signaling and Behavior. 7:276-281.
Koichi K, Mayer R, Kaur K, Cottrell AA, Gordon IJ.  2012.  Aboriginal rangers' perspectives on feral pigs: are they a pest or a resource? A case study in the wet tropics world heritage area of Northern Queensland Journal of Australian Indigenous Issues. 15:2-19.
Johnson SN, Clark KE, Hartley SE, Jones TH, McKenzie SW, Koricheva J.  2012.  Aboveground-belowground herbivore interactions: a meta-analysis. Ecology. 93:2208-2215.
Catterall S, Cook AR, Marion G, Butler A, Hulme PE.  2012.  Accounting for uncertainty in colonisation times: a novel approach to modelling the spatio-temporal dynamics of alien invasions using distribution data. Ecography. 35:901-911.
Santos PM, Thornton B, Corsi M.  2012.  Adaptation of the C-4 grass panicum maximum to defoliation is related to plasticity of N uptake, mobilisation and allocation patterns. Scientia Agricola. 69:293-299.
Cammarano D, Payero J, Basso B, Stefanova L, Grace P.  2012.  Adapting wheat sowing dates to projected climate change in the Australian sub-tropics: analysis of crop water use and yield. Crop and Pasture Science.
Nijnik M, Oskam A, Nijnik, M.; Mather A.  2012.  Afforestation for the provision of multiple ecosystem services: a Ukrainian case study. International Journal of Forestry Research, 2012, Article ID 295414, 12pp..
Raven JA.  2012.  Algal biogeography: metagenomics shows distribution of a picoplanktonic pelagophyte. Current Biology. 22:R682-R683.
Raven JA, Giordano M, Beardall J, Maberly SC.  2012.  Algal evolution in relation to atmospheric CO2: carboxylases, carbon-concentrating mechanisms and carbon oxidation cycles. Philosophical Transactions of the Royal Society, B. 367:493-507.
Dupuy LX, Vignes M.  2012.  An algorithm for the simulation of the growth of root systems on deformable domains. Journal of Theoretical Biology. 310:164-174.
Pritchard L, Holden NJ, Bielaszewska M, Karch H, Toth IK.  2012.  Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104:H4 outbreak strains. PLoS ONE. 7:e34498.
Spies A, Korzun V, Bayles R, Rajaraman J, Himmelback A, Hedley PE, Schweizer P.  2012.  Allele mining in barley genetic resources reveals genes of race-non-specific powdery mildew resistance. Frontiers in Plant Science. 2:113.
Rodriguez-Gutierrez G, Duthie GG, Wood S, Morrice P, Nicol F, Reid M, Cantlay LL, Kelder T, Horgan GW, Fernandez-Bolanos Guzman J et al..  2012.  Alperujo extract, hydroxytyrosol, and 3,4-dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin e-deficient ratsua proteomics and network analysis approach. Molecular Nutrition and Food Research. 56:1131-1147.
Kalyna M, Simpson CG, Syed NH, Lewandowska D, Marquez Y, Kusenda B, Marshall J, Fuller J, Cardle L, McNicol JW et al..  2012.  Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Research. 40:2454-2469.
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JWS.  2012.  Alternative splicing in plants - coming of age. Trends in Plant Science. 17:616-623.
James A, Syed NH, Bordage S, Marshall J, Nimmo GA, Jenkins GI, Herzyk P, Brown JWS, Nimmo HG.  2012.  Alternative splicing mediates responses of the Arabidopsis thaliana circadian clock to temperature changes. The Plant Cell. 24:961-981.
Bingham IJ, Karley AJ, White PJ, Thomas WTB, Russell JR.  2012.  Analysis of improvements in nitrogen use efficiency associated with 75 years of spring barley breeding. European Journal of Agronomy. 42:49-58.
Houston K, Druka A, Bonar N, Macaulay M, Lundqvist U, Franckowiak JD, Morgante M, Stein N, Waugh R.  2012.  Analysis of the barley bract suppression gene Trd1. Theoretical and Applied Genetics. 125:33-45.
De Smet I, White PJ, Bengough AG, Dupuy L, Parizot B, Casimiro I, Heidstra R, Laskowski M, Lepetit M, Hochholdinger F et al..  2012.  Analyzing lateral root development: how to move forward. The Plant Cell. 24:15-20.
Morenoa FC, Gordon IJ, Knox MR, Summer PM, Skerrat LF, Benvenutti MA, Saumell CA.  2012.  Anthelmintic efficacy of five tropical native Australian plants against Haemonchus contortus and Trichostrongylus colubriformis in experimentally infected goats (Capra hircus). Veterinary Parasitology. 187:237-243.
Rhind SM.  2012.  Anthropogenic pollutants - a insidious threat to animal health and productivity? Acta Veterinaria Scandinavica. 54:S2.
Bernaert N, De Paepe D, Bouten C, Declercq H, Stewart D, Van Bockstaele E, De Loose M, Van Droogenbroeck B.  2012.  Antioxidant capacity, total phenolic and ascorbate content as a function of the genetic diversity of leek (Allium ampeloprasum var. porrum). Food Chemistry. 134:669-677.
Troldborg M, Nowak W, Lange IV, Santos MC, Binning PJ, Bjerg PL.  2012.  Application of Bayesian geostatistics for evaluation of mass discharge uncertainty at contaminated sites. Water Resources Research. 48
Vinten AJA, Martin-Ortega J, Glenk K, Booth P, Balana BB, MacLeod M, Lago M, Moran D, Jones M.  2012.  Application of the WFD cost proportionality principle to diffuse pollution mitigation: a case study for Scottish Lochs. Journal of Environmental Management. 97:28-37.
Koichi K, Cottrell A, Sangha KK, Gordon IJ.  2012.  Are feral pigs (Sus scrofa) a pest to rainforest tourism? Journal of Ecotourism. 11:132-148.
Ascher J, Sartori G, Graefe U, Thornton B, Ceccherini MT, Pietramellara G, Egli M.  2012.  Are humus forms, mesofauna and microflora in subalpine forest soils sensitive to thermal conditions? Biology and Fertility of Soils. 48:709-725.
Minh ND, Hough RL, Thuy LT, Nyberg Y, Mai LB, Vinh NC, Khai NM, Oborn I.  2012.  Assessing dietary exposure to cadmium in a metal recycling community in Vietnam: age and gender aspects. Science of the Total Environment. 416:164-171.
Wemelsfelder F, Hunter AE, Paul ES, Lawrence AB.  2012.  Assessing pig body language: agreement and consistency between pig farmers, veterinarians, and animal activists. Journal of Animal Science. 90:3652-3665.
Kleyer M, Dray S, de Bello F, Leps J, Pakeman RJ, Strauss B, Thuiller W, Lavorel S.  2012.  Assessing species and community functional responses to environmental gradients: which multivariate methods? Journal of Vegetation Science. 23:805-821.
Bartley K, Huntley JF, Wright HW, Nath M, Nisbet AJ.  2012.  Assessment of cathepsin D and L-like proteinases of poultry red mite, Dermanyssus gallinae (De Geer), as potential vaccine antigens. Parasitology. 139:755-765.
Berbel J, Kolberg S, Martin-Ortega J.  2012.  Assessment of the draft hydrological basin plan of the Guadalquivir River Basin (Spain). Water Resources Development.. 28:43-55.
MacKenzie K, Hackett CA.  2012.  Association mapping in a simulated barley population. Euphytica. 183:337-347.
Gregory PJ, Marshall B.  2012.  Attribution of climate change: a methodology to estimate the potential contribution to increases in potato yield in Scotland since 1960. Global Change Biology. 18:1372-1388.
Wang C, Wan TR, Palmer IJ.  2012.  Automatic reconstruction of 3D environment using real terrain data and satellite images. Intelligent Automation and Soft Computing. 18:49-63.
Jordan MO, Wendler R, Millard P.  2012.  Autumnal N storage determines the spring growth, N uptake and N internal cycling of young peach trees. Trees - Structure and Function. 26:393-404.
Wawra S, Agacan M, Boddey JA, Davidson I, Gachon CMM, Zanda M, Grouffaud S, Whisson SC, Birch PRJ, Porter AJ et al..  2012.  Avirulence protein 3a (AVR3a) from the potato pathogen Phytophthora infestans forms homodimers through its predicted translocation region and does not specifically bind phospholipids. Journal of Biological Chemistry. 287:38101-38109.
Thomas CR, Gordon IJ, Wooldridge S, Marshall P.  2012.  Balancing the trade-offs between ecological and economic risks in the Great Barrier Reef: a pragmatic conceptual framework. Human and Ecological Risk Assessment.. 18:69-91.
Martin-Ortega J, Brouwer R, Ojea E, Berbel J.  2012.  Benefit transfer and spatial heterogeneity of preferences for water quality improvements. Journal of Environmental Management. 106:22-29.
Boath AS, Stewart D, McDougall GJ.  2012.  Berry components inhibit alpha-glucosidase in vitro: synergies between acarbose and polyphenols from black currant and rowanberry. Food Chemistry. 135:929-936.
Boath AS, Grussu D, Stewart D, McDougall GJ.  2012.  Berry polyphenols inhibit digestive enzymes: a source of potential health benefits? Food Digestion. 3:1-7.
White PJ, Broadley MR, Hammond JP, Ramsay G, Subramanian NK, Thompson JA, Wright GM.  2012.  Bio-fortification of potato tubers using foliar zinc-fertiliser. Journal of Horticultural Science and Biotechnology. 87:123-129.
Talevich E, Invergo BM, Cock PJA, Chapman BA.  2012.  Bio.Phylo: a unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biophyton. BMC Bioinformatics. 13:209.
Dawson JJC, Adhikari YR, Soulsby C, Stutter MI.  2012.  The biogeochemical reactivity of suspended particulate matter at nested sites in the Dee basin, NE Scotland. Science of the Total Environment. 434:159-170.
Griffiths BS, Daniell TJ, Donn S, Neilson R.  2012.  Bioindication potential of using molecular characterisation of the nematode community: response to soil tillage. European Journal of Soil Biology. 49:92-97.
Blok VC, Phillips MS.  2012.  Biological characterisation of Globodera pallida from Idaho. Nematology. 14:817-826.
Subbarao GV, Sahrawat KL, Nakahara K, Ishikawa T, Rao GP, Hash CT, George TS, Kishii M, Rao PS, Nardi P et al..  2012.  Biological nitrification inhibition (BNI) - a novel strategy to regulate nitrification in agricultural systems. Advances in Agronomy. 114:249-302.
Chen WM, Prell J, James EK, Sheu D, Sheu S.  2012.  Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica. Microbiology. 158:1758-1766.
Ross L, Woodin S, Hester AJ, Thompson DBA, Birks HJ.  2012.  Biotic homogenization of upland vegetation: patterns and drivers at multiple spatial scales over five decades. Journal of Vegetation Science. 23:755-770.
Linder HP, Bykova O, Dyke J, Etienne RS, Hickler T, Kuehn I, Marion G, Ohlemueller R, Schymanski SJ, Singer A.  2012.  Biotic modifiers, environmental modulation and species distribution models. Journal of Biogeography. 39:2179-2190.
Wei Z, Hillier S, Gadd GM.  2012.  Biotransformation of manganese oxides by fungi: solubilization and production of manganese oxalate biominerals. Environmental Microbiology. 14:1744-1752.
Liu XY, Wei S, Wang F, James EK, Zagar C, Wang YP, Dong X, Hui T, Xia LG.  2012.  Burkholderia and Cupriavidus spp. are the preferred symbionts of Mimosa spp. in Southern China. FEMS Microbiology Ecology. 80:417-426.
Sheu SY, Chou JH, Bontemps C, Elliott GN, Gross E, James EK, Sprent JI, Young JPW, Chen WM.  2012.  Burkholderia symbiotica sp. Nov., isolated from root nodules of Mimosa spp. native to North East Brazil. International Journal of Systematic and Evolutionary Microbiology. 62:2272-2278.
Whisson SC, Vetukuri R, Avrova AO, Dixelius C.  2012.  Can silencing of transposons contribute to variation in effector gene expression in Phytophthora infestans? Mobile Genetic Elements. 2:110-114.
Beesley L.  2012.  Carbon storage and fluxes in existing and newly created urban soils. Journal of Environmental Management. 104:158-165.
Xu Y.  2012.  Carbon tax or cap-and-trade: a computable general equilibrium analysis of Chinese economy. EconModels, March 2012..
Love AJ, Geri C, Laird J, Carr C, Yun BW, Loake GJ, Tada Y, Sadanandom A, Milner JJ.  2012.  Cauliflower mosaic virus protein P6 inhibits signaling responses to salicylic acid and regulates innate immunity. PLoS One. 7:e47535.
Logie L, Harthill J, Patel K, Bacon S, Hamilton DL, Macrae K, McDougall GJ, Wang HH, Xue L, Jiang H et al..  2012.  Cellular responses to the metal-binding properties of metformin. Diabetes. 61:1423-1433.
Sonnenberg R, Bransby MF, Bengough AG, Hallett PD, Davies MCR.  2012.  Centrifuge modelling of soil slopes containing model plant roots. Canadian Geotechnical Journal. 49:1-17.
Flynn KJ, Blackford JC, Baird ME, Raven JA, Clark DR, Beardall J, Brownlee C, Fabian H, Wheeler GL.  2012.  Changes in pH at the exterior surface of plankton with ocean acidification. Nature Climate Change. 2:510-513.
Valdes Y, Viaene N, Blok V, Palomares-Rius JE, Moens M.  2012.  Changes in the pre-parasitic developmental stage of Globodera rostochiensis in response to green manures. Nematology. 14:925-932.
Newton AC, Torrance L, Holden N, Toth IK, Cooke DEL, Blok VC, Gilroy EM.  2012.  Chapter three - climate change and defence against pathogens in plants. Advances in Applied Microbiology. 81:89-132.
Farrugia K, Bandey H, Dawson LA, NicDaeid NN.  2012.  Chemical enhancement of soil based footwear impressions on fabric. Forensic Science International. 219:12-28.
Brittain SR, Cox AG, Tomos AD, Paterson E, Siripinyanond A, McLeod CW.  2012.  Chemical speciation studies on DU contaminated soils using flow field flow fractionation linked to inductively coupled plasma mass spectrometry (FIFFF-ICP-MS). Journal of Environmental Monitoring. 14:782-790.
Limmer D, Kohler C, Hillier S, Moreton S, Tabrez A, Clift P.  2012.  Chemical weathering and provenance evolution of Holocene-Recent sediments from the Western Indus Shelf, Northern Arabian Sea inferred from physical and mineralogical properties. Marine Geology. 326-328:101-115.
Alizai A, Hillier S, Clift PD, Giosan L, Hurst A, VanLaningham S, Macklin M.  2012.  Clay mineral variations in holocene terrestrial sediments from the Indus Basin. Quaternary Research. 77:368-381.
Fischer A, Peters V, Neebe M, Vavra J, Kriel A, Lapka M, Megyesi B.  2012.  Climate change? No, wise resource use is the issue: social representations of energy, climate change and the future Environmental Policy and Governance. 22:161-176.
Toorop PE, Cuerva RC, Begg GS, Locardi B, Wishart J, Squire GR, Iannetta PPM.  2012.  Co-adaptation of seed dormancy and flowering time in the arable weed Capsella bursa-pastoris (shepherd's purse). Annals of Botany. 109:481-489.
Davies AL, White RM.  2012.  Collaboration in natural resource governance: Reconciling stakeholder expectations in deer management in Scotland. Journal of Environmental Management.. 112:160-169.
Sutherland WJ, Bellingan L, Bellingham JR, Blackstock JJ, Bloomfield RM, Bravo M, Cadman VM, Cleevely DD, Clements A, Cohen AS et al..  2012.  A collaboratively-derived science-policy research agenda. PloS ONE. 7:e31824.
Lumsdon DG.  2012.  Comment on "Fertilization and pH effects on processes and mechanisms controlling dissolved inorganic phosphorus in soils" by Nicolas Devau et al. (2011). Geochimica et Cosmochimica Acta. 92:260-264.
Fridley JD, Grime JP, Huston MA, Pierce S, Smart SM, Thompson K, Boerger L, Brooker RW, Cerabolini BEL, Gross N et al..  2012.  Comment on "Productivity Is a Poor Predictor of Plant Species Richness". Science. 335:1441.
Suarez-Moreno ZR, Caballero-Mellado J, Coutinho BG, Mendonca-Previato L, James EK, Venturi V.  2012.  Common features of environmental and potentially beneficial plant-associated Burkholderia. Microbial Ecology. 63:249-266.
Arts K, Fischer A, van der Wal R.  2012.  Common stories of reintroduction: A discourse analysis of documents supporting animal reintroductions to Scotland. Land Use Policy. 29:911-920.
Krueger T, Quinton JN, Freer J, Macleod CJA, Bilotta GS, Brazier RE, Hawkins JMB, Haygarth PM.  2012.  Comparing empirical models for sediment and phosphorus transfer from soils to water at field and catchment scale under data uncertainty. European Journal of Soil Science. 63:221-223.
Roberts AMI.  2012.  Comparison of regression methods for phenology. International Journal of Biometeorology. 56:707-717.
Hoolahan A, Blok VC, Gibson T, Dowton M.  2012.  A comparison of three molecular markers for the identification of populations of Globodera pallida. Journal of Nematology. 44:7-17.
Palomares-Rius JE, Hedley PE, Cock PJA, Morris JA, Jones JT, Vovlas N, Blok V.  2012.  Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes. Molecular Plant Pathology. 13:1120-1134.
Cognat C, Shepherd T, Verrall SR, Stewart D.  2012.  Comparison of two headspace sampling techniques for the analysis of off-flavour volatiles from oat based products. Food Chemistry. 134:1592-1600.
Langkilde S, Schroder M, Frank T, Shepherd LVT, Conner S, Davies HV, Meyer O, Danier J, Rychlik M, Belknap WR et al..  2012.  Compositional and toxicological analysis of a GM potato line with reduced alpha-solanine content - A 90-day feeding study in the Syrian Golden hamster. Food and Chemical Toxicology. 64:177-185.
Vergara P, Mougeot F, Martinez-Padilla, J.; Millan J, Leckie F, Redpath SM.  2012.  The condition dependence of a secondary sexual trait is stronger under high parasite infection level. Behavioural Ecology. 23:502-511.
Stien A, Ims RA, Albon SD, Fuglei E, Irvine RJ, Ropstad E, Halvorsen O, Langvatn R, Loe LE, Veiberg V et al..  2012.  Congruent responses to weather variability in high arctic herbivores. Biology Letters. 8:1002-1005.
Perkins DM, Yvon-Durocher G, Demars BOL, Reiss J, Pichler DE, Friberg N, Trimmer M, Woodward G.  2012.  Consistent temperature dependence of respiration across ecosystems contrasting in thermal history. Global Change Biology. 18:1300-1311.
Walters DR, Avrova A, Bingham IJ, Burnett FJ, Fountaine J, Havis ND, Hoad SP, Hughes G, Looseley M, Oxley SJP et al..  2012.  Control of foliar diseases in barley: towards an integrated approach. European Journal of Plant Pathology. 133:33-73.
Jackson-Blake LA, Helliwell RC, Britton A, Gibbs S, Coull MC, Dawson LA.  2012.  Controls on soil solution nitrogen along an altitudinal gradient in the Scottish uplands. Science of the Total Environment. 431:100-108.
Hrynkiewicz K, Toljander YK, Baum C, Fransson PMA, Taylor AFS, Weih M.  2012.  Correspondence of ectomycorrhizal diversity and colonisation of willows (Salix spp.) grown in short rotation coppice on arable sites and adjacent natural stands. Mycorrhiza. 22:603-613.
Balana BB, Muys B, Haregeweyn N, Descheemaeker K, Deckers J, Poesen J, Nyssen J, Mathijs E.  2012.  Cost-benefit analysis of soil and water conservation measures: The case of exclosures in northern Ethiopia. Forest Policy and Economics. 15:27-36.
Martin-Ortega J, Balana BB.  2012.  Cost-effectiveness analysis in the implementation of the Water Framework Directive: a comparative analysis of the United Kingdom and Spain. European Waters. 37:15-25.
Bakam I, Balana BB, Matthews RB.  2012.  Cost-effectiveness analysis of policy instruments for greenhouse gas emission mitigation in the agricultural sector. Journal of Environmental Management. 112:33-44.
Martin-Ortega J, Gonzalez-Eguino M, Markandya A.  2012.  The costs of drought: the 2007-2008 case of Barcelona. Water Policy. 14:539-560.
Birch PRJ, Bryan GJ, Fenton B, Gilroy EM, Hein I, Jones JT, Prashar A, Taylor MA, Torrance L, Toth IK.  2012.  Crops that feed the world 8: potato: are the trends of increased global production sustainable? Food Security. 4:477-508.
Deffuant G, Alvarez I, Barreteau O, de Vries B, Edmonds B, Gilbert N, Gotts N, Jabot F, Janssen S, Hilden M et al..  2012.  Data and models for exploring sustainability of human well-being in global environmental change. European Physical Journal Special Topics.. 214:519-545.
Palarea-Albaladejo J, Antoni Martin-Fernandez J, Soto JA.  2012.  Dealing with distances and transformations for fuzzy c-means clustering of compositional data. Journal of Classification. 29:144-169.
Hu D, Boning P, Kohler CM, Hillier S, Pressling N, Wan S, Brumsack HJ, Clift PD.  2012.  Deep sea records of the continental weathering and erosion response to East Asian monsoon intensification since 14ka in the South China Sea. Chemical Geology. 326-327:1-18.
Deflorio G, Horgan GW, Jaspars M, Woodward S.  2012.  Defence response of Sitka spruce before and after inoculation with Heterobasidion annosum: 1H NMR fingerprinting of bark and sapwood metabolites. Analytical and Bioanalytical Chemistry. 402:3333-3344.
Ojea E, Martin-Ortega J, Chiabai A.  2012.  Defining and classifying ecosystem services for economic valuation: the case of forest water services. Environmental Science and Policy. 19-20:1-15.
Wright J, Lees AK, van der Waals JE.  2012.  Detection and eradication of Spongospora subterranea in mini-tuber production tunnels. South African Journal of Science. 108:85-88.
Meier-Augenstein W, Kemp HF, Hardie SML.  2012.  Detection of counterfeit Scotch whisky by H-2 and O-18 stable isotope analysis. Food Chemistry. 133:1070-1074.
Sorin R, Gordon IJ.  2012.  Developing a methodology to assess children's perceptions of the tropical environment. International Education Studies, 6. 96-109.. 6:96-109.
McCallum S, Woodhead M, Jorgensen L, Gordon SL, Brennan RM, Graham J, Hackett CA, Rowland LJ, Hancock JF, Olmstead JW et al..  2012.  Developing tools for long term breeding of blueberry germplasm for UK production. International Journal of Fruit Science. 12:294-303.
Carlsson AM, Wilson K, Irvine RJ.  2012.  Development and application of a delayed-release anthelmintic intra-ruminal bolus system for experimental manipulation of nematode worm burdens. Parasitology. 139:1086-1092.
Lees AK, Sullivan L, Lynott JS, Cullen DW.  2012.  Development of a quantitative real-time PCR assay for Phytophthora infestans and its applicability to leaf, tuber and soil samples. Plant Pathology. 61:867-876.
George D, Rind FC, Bendall MW, Taylor MA, Gatehouse AMR.  2012.  Developmental studies of transgenic maize expressing Cry1Ab on the African stem borer, Busseola fusca; effects on midgut cellular structure. Pest Management Science. 68:330-339.
Holtrop G, Johnstone AM, Fyfe C, Gratz SW.  2012.  Diet composition is associated with endogenous formation of n-nitroso compounds in obese men. Journal of Nutrition. 142:1652-1658.
Pilot M, Jedrzejewski W, Sidorovich VE, Meier-Augenstein W, Kemp HF, Hoelzel AR.  2012.  Dietary differentiation and the evolution of population genetic structure in a highly mobile carnivore. PLoS ONE. 7:e39341.
Broadley MR, Chilimba ADC, Joy EJM, Young SD, Black CR, Ander EL, Watts MJ, Hurst R, Fairweather-Tait SJ, White PJ et al..  2012.  Dietary requirements for magnesium but not calcium are likely to be met in Malawi based on national food supply data. International Journal for Vitamin and Nutrition Research. 82:192-199.
Gromov AV, Gray N, Szilagyi PA, Campbell EEB.  2012.  Direct grafting of carbon nanotubes with ethylenediamine. Journal of Materials Chemistry. 22:21242-21248.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.