Publications list
Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation. Nature Structural and Molecular Biology. 19:845-852.
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2012.
Directed terminal restriction analysis tool (DRAT): an aid to enzyme selection for directed terminal restriction fragment length polymorphisms. Methods in Ecology and Evolution. 3:24-28.
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2012.
Disease transmission in an extreme environment: Nematode parasites infect reindeer during the Arctic winter. International Journal for Parasitology. 42:789-795.
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2012.
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2012.
Distribution of calcium (Ca) and magnesium (Mg) in the leaves of Brassica rapa under varying exogenous Ca and Mg supply. Annals of Botany. 109:1081-1089.
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2012.
Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand. Biodiversity and Conservation, 21, 2287-2298..
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2012.
Dynamic trajectories of growth and nitrogen capture by competing plants. New Phytologist. 193:948-958.
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2012.
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2012.
Economic prescriptions and policy applications in the implementation of the Water Framework Directive. Environmental Science and Policy. 24:83-91.
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2012.
The economic value of guaranteed water supply for irrigation under scarcity conditions. Agricultural Water Management. 113:10-18.
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2012.
Ecophysiology of photosynthesis in macroalgae. Photosynthesis Research. 113:105-125.
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2012.
Edaphic factors influence the longevity of seeds in the soil. Plant Ecology. 213:57-65.
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2012.
Editor's Choice: crop genome plasticity and its relevance to food and feed safety of genetically engineered breeding stacks. Plant Physiology. 160:1842-1853.
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2012.
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2012.
Effect of a tomato-rich diet on markers of cardiovascular disease risk in moderately overweight, disease-free, middle-aged adults: a randomized controlled trial. American Journal of Clinical Nutrition. 95:1013-1022.
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2012.
The effect of deer management on the abundance of Ixodes ricinus in Scotland. Ecological Applications. 22:658-667.
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2012.
Effect of nitrogen form on gene expression in leaf tissue of greenhouse grown potatoes during three stages of growth. American Journal of Potato Research. 89:315-327.
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2012.
Effect of phosphoglycerate mutase and fructose 1,6-bisphosphatase deficiency on free-living and symbiotic Burkholderia phymatum. Microbiology-SGM. 158:1127-1136.
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2012.
Effect of roasting conditions and grinding on free radical contents of coffee beans stored in air. Food Chemistry. 131:811-816.
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2012.
Effect of supplementation with an 80:20 cis9, trans11 conjugated linoleic acid blend on the human platelet proteome. Molecular Nutrition and Food Research. 56:1148-1159.
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2012.
Effectiveness indicators for forest owner's association in Portugal. Silva Lusitana. 20:55-70.
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2012.
Effector-triggered post-translational modifications and their role in suppression of plant immunity. Frontiers in Plant Science. 3:160.
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2012.
The effects of climate change on the mobilization of diffuse substances from agricultural systems. Advances in Agronomy. 115:41-77.
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2012.
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2012.
Effects of exposure to environmental chemicals during pregnancy on the development of the male and female reproductive axes. Reproduction in Domestic Animals. 47:15-22.
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2012.
Effects of methyl-deficient diets on methionine and homocysteine metabolism in the pregnant rat. American Journal of Physiology - Endocrinology and Metabolism. 302:E1531-E1540.
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2012.
Effects of polychlorinated biphenyls in CD-1 mice: reproductive toxicity and intergenerational transmission. Toxicological Sciences. 126:213-226.
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2012.
Effects of species, root branching order and season on the root traits of 13 perennial grass species. Plant and Soil. 353:47-57.
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2012.
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2012.
Elemental status (Cu, Mo, Co, B, S, and Zn) of Scottish agricultural soils compared with a soil-based risk assessment. Soil Use and Management. 28:167-176.
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2012.
Elevational advance of alpine plant communities is buffered by herbivory. Journal of Vegetation Science. 23:617-625.
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2012.
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2012.
Enhancing flood resilience through improved risk communications. Natural Hazards and Earth System Sciences. 12:2271-2282.
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2012.
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2012.
Environmental conditions influence red grouse ornamentation at a population level. Biological Journal of the Linnean Society. 107:788-798.
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2012.
Environmental controls on coccolithophore calcification. Marine Ecology Progress Series. 470:137-166.
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2012.
Environmental heterogeneity influences the reliability of secondary sexual traits as condition indicators. Journal of Evoluationary Biology. 25:20-28.
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2012.
Epigenetic remodeling of meiotic crossover frequency in arabidopsis thaliana DNA methyltransferase mutants. PLoS Genetics. 8:e1002844.
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2012.
Equine cestodosis: a sero-epidemiological study of Anoplocephala perfoliata infection in Ethiopia. Veterinary Research Communication. 36:93-98.
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2012.
Estimating carbon price from a closed emission trading scheme in the agricultural sector. Journal of Land Use Science. 6:1-18.
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2012.
Estimating greenhouse gas abatement potential of biomass crops in Scotland under various management options. Biomass and Bioenergy. 47:211-227.
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2012.
Estimating root-soil contact from 3-D X-ray microtomographs. European Journal of Soil Science. 63:776-786.
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2012.
Evaluating the utility of N-15 and O-18 isotope abundance analyses to identify nitrate sources: a soil zone study. Water Research. 46:3723-3736.
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2012.
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2012.
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2012.
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2012.
An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies. BMC Genomics. 13:42-42.
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2012.
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2012.
First comprehensive peat depositional records for tin, lead and copper associated with the antiquity of Europe’s largest cassiterite deposits. Journal of Archaeological Science. 39:717-727.
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2012.
Fisheries conservation and management: finding consensus in the midst of competing paradigms. Animal Conservation. 15:1-3.
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2012.
The flux of dissolved nitrogen from the UK - Evaluating the role of soils and land use. Science of the Total Environment. 434:90-100.
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2012.
The flux of DOC from the UK - predicting the role of soils, land use and net watershed losses. Journal of Hydrology. 448-449:149-150.
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2012.
Foetal and post-natal exposure of sheep to sewage sludge chemicals disrupts sperm production in adulthood in a subset of animals. International Journal of Andrology. 35:317-329.
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2012.
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2012.
Foundation species influence trait-based community assembly. New Phytologist. 196:824-834.
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2012.
From pure to applied: legume research reports from down under. New Phytologist. 194:318-320.
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2012.
Functional roles for redox genes in ethanol sensitivity in Drosophila. Functional and Integrative Genomics. 12:305-315.
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2012.
Functional roles of effectors of plant-parasitic nematodes. Gene. 492:19-31.
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2012.
Funding nature conservation: who pays? Animal Conservation. 15:215-216.
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2012.
Fungal and bacterial denitrification are differently affected by long-term pH amendment and cultivation of arable soil. Soil Biology and Biochemistry. 54:25-35.
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2012.
Gasterophilosis: a major cause of rectal prolapse in working donkeys in Ethiopia. Tropical Animal Health and Production. 44:757-762.
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2012.
Generating genomic tools for blueberry improvement. International Journal of Fruit Science. 12:276-287.
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2012.
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2012.
Genetic characterization of a reciprocal translocation present in a widely grown barley variety. Molecular Breeding. 30:1109-1119.
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2012.
Genetic characterization of the HrpL regulon of the fire blight pathogen Erwinia amylovora reveals novel virulence factors. Molecular Plant Pathology. 13:160-173.
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2012.
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2012.
Genetic diversity in European Pisum germplasm collections. Theoretical and Applied Genetics. 125:367-380.
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2012.
The genetic ghost of an invasion past: colonization and extinction revealed by historical hybridisation in Senecio. Molecular Ecology. 21:369-387.
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2012.
Genetic linkage mapping in an F2 perennial ryegrass population saturated with DArT markers. Plant Breeding. 131:345-349.
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2012.
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2012.
Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathogens. 8:e1002940.
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2012.
Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen phytophthora capsici. Molecular Plant-Microbe Interactions. 25:1350-1360.
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2012.
Genome-wide analysis of the response of Dickeya dadantii 3937 to plant antimicrobial peptides. Molecular Plant-Microbe Interactions. 25:523-533.
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2012.
Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars. Theoretical and Applied Genetics. 124:233-246.
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2012.
Genome-wide identification of genes regulated by the Rcs phosphorelay system in Erwinia amylovora. Molecular Plant-Microbe Interactions. 25:6-17.
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2012.
Glasshouse vs field experiments: do they yield ecologically similar results for assessing N impacts on peat mosses? New Phytologist. 195:408-418.
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2012.
Global change and the world's mountains: research needs and emerging themes for sustainable development. A synthesis from the 2010 Perth II conference. Mountain Research and Development. 32:S47-S54.
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2012.
Grazing exclusion and phosphorus addition as potential local management options for the restoration of alpine moss-sedge heath. Biological Conservation. 153:17-24.
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2012.
Grazing impacts on Auchenorrhyncha diversity and abundance on a Scottish upland estate. Insect Conservation and Diversity. 5:67-74.
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2012.
A hierarchical Bayesian mixture model for repeated dietary records. Food and Chemical Toxicology. 50:320-327.
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2012.
Hierarchical Bayesian models in ecology: Reconstructing species interaction networks from non-homogeneous species abundance data. Ecological Informatics. 11:55-64.
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2012.
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2012.
High-frequency storm event isotope sampling reveals time-variant transit time distributions and influence of diurnal cycles. Hydrological Processes. 26:308-316.
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2012.
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana. Nucleic Acids Research. 40:11240-11255.
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2012.
Host gene expression changes in cattle infected with Alcelaphine herpesvirus 1. Virus Research. 169:246-254.
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2012.
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2012.
Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner. Proceedings of the National Academy of Sciences. 109:2096-2101.
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2012.
How conserved are the bacterial communities associated with aphids? A detailed assessment of the cabbage aphid (Brevicoryne brassicae) using 16S rDNA Environmental Entomology. 41:1386-1397.
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2012.
How do rootstocks control shoot water relations? New Phytologist. 194:301-303.
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2012.
How fen vegetation structure affects the transport of oil sands process-affected waters. Wetlands. 32:557-570.
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2012.
How national context, project design, and local community characteristics influence success in community-based conservation projects. Proceedings of the National Academy of Sciences (PNAS). 109:2165-21270.
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2012.
How should regional biodiversity be monitored? Environmental and Ecological Statistics. 19:601-626.
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2012.
How to manage the impact of gene flow on oilseed rape grain quality? Simulation case studies of three contrasted landscapes European Journal of Agronomy. 38:32-42.
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2012.
The identification and interpretation of differences in the transcriptomes of organically and conventionally grown potato tubers. Journal of Agricultural and Food Chemistry. 60:2090-2101.
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2012.
Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics. 13:1-14.
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2012.
Immuno-epidemiology of chronic bacteria-helminth co-infections: observations from the field and evidence from the laboratory. International Journal of Parasitology. 42:647-655.
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2012.
Impact of endocrine-disrupting compounds (EDCs) on female reproductive health. Molecular and Cellular Endocrinology. 355:231-239.
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2012.
Impact of external sources of infection on the dynamics of bovine tuberculosis in modelled badger populations. BMC Veterinary Research. 8:92.
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2012.
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2012.
Impacts of artificial structures on the freshwater pearl mussel Margaritifera margaritifera in the River Dee, Scotland. Aquatic Conservation: Marine and Freshwater Ecosystems. 22:318-330.
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2012.
Impacts of atmospheric nitrogen deposition: responses of multiple plant and soil parameters across contrasting ecosystems in long-term field experiments. Global Change Biology. 18:1197-1215.
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2012.
Impacts of climate, host and landscape factors on Culicoides species in Scotland. Medical and Veterinary Entomology. 26:168-177.
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2012.
Impacts of flow regulation on freshwater pearl mussel (Margaritifera margaritifera) habitat in a Scottish montane river. Science of the Total Environment. 432:318-328.
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2012.
Impacts of warming on the structure and functioning of aquatic communities: individual- to ecosystem-level responses. Chapter 2. Advances in Ecological Research. 47:81-176.
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2012.
Improved real-time PCR estimation of gene copy number in soil extracts using an artificial reference. Journal of Microbiological Methods. 91:38-44.
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2012.
In planta production of a candidate vaccine against bovine papillomavirus type 1. Planta. 236:1305-1313.
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2012.
In vivo expression and binding activity of scFv-RWAV, which recognises the coat protein of tomato leaf curl New Delhi virus (family Geminivirdae). Archives of Virology. 157:1291-1299.
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2012.
Inactivation of PbTopo III beta causes hyper-excision of the Pathogenicity Island HAI2 resulting in reduced virulence of Pectobacterium atrosepticum. Molecular Microbiology. 84:648-663.
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2012.
Incorporating uncertainty in predictive species distribution modelling. Philosophical Transactions of the Royal Society B. 367:247-258.
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2012.
Incorporation of 13C-labelled rice rhizodeposition carbon into soil microbial communities under different water status. Soil Biology and Biochemistry. 53:72-77.
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2012.
Induced mutations in circadian clock regulator Mat-a facilitated short-season adaptation and range extension in cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:4326-4331.
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2012.
Infestation of potato (Solanum tuberosum L.) by the peach-potato aphid (Myzus persicae Sulzer) alters cellular redox status and is influenced by ascorbate. Plant Cell and Environment. 35:430-440.
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2012.
The influence of herbage mass and supplementary feeding on nutrient flows and animal performance in grazing, lactating ewes. Journal of Agricultural Science. 150:644-662.
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2012.
Influence of pit removal methods on river network position. Hydrological Processes. 26:1984-1990.
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2012.
The influence of steep regime and germination period on the malting properties of some hull-less barley lines. Journal of the Institute of Brewing. 118:186-191.
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2012.
The influences of actual and perceived familiarity on environmental preferences for the design of a proposed urban square. Urban Studies Research, Article id 767048, 9pp..
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2012.
Inhibition of acetylcholinesterase by green and white tea and their simulated intestinal metabolites. Food and Function. 3:651-661.
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2012.
Inorganic arsenic and basal cell carcinoma in areas of Hungary, Romania, and Slovakia: A case-control study. Environmental Health Perspectives. 120:721-726.
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2012.
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2012.
Integrated genetic and computation methods for in planta cytometry. Nature Methods. 9:483-485.
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2012.
Integrating economic and biophysical data in assessing cost-effectiveness of buffer strip placement. Journal of Environmental Quality. 41:380-388.
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2012.
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2012.
Interactions between a collectivist culture and Buddhist teachings influence environmental concerns and behaviors, in the Republic of Kalmykia, Russia. Society and Natural Resources. 25:1118-1133.
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2012.
Interactions between profit and welfare on extensive sheep farms. Animal Welfare. 21:57-64.
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2012.
Investigating preference-performance relationships in aboveground-belowground life cycles: a laboratory and field study with the vine weevil (Otiorhynchus sulcatus). Bulletin of Entomological Research. 102:63-70.
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2012.
Investigating riparian margins for vegetation patterns and plant-environment relationships in northeast Scotland. Journal of Environmental Quality. 41:364-372.
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2012.
An investigation into the fruit firmness properties of some progeny and cultivars of red raspberry (Rubus idaeus). IOSR Journal of Environmental Science, Toxicology and Food Technology. 1:4-12.
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2012.
Is D-methionine bioavailable to the dairy cow? Journal of Dairy Science. 95:353-362.
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2012.
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2012.
Kale population improvement and cultivar production. Euphytica. 184:275-288.
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2012.
Land use and a low-carbon society. Earth and Environmental Science Transactions of the Royal Society of Edinburgh, 103, 165-173..
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2012.
Landscape genetics of a top neotropical predator. Molecular Ecology. 21:5969-5985.
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2012.
Landscapes of challenge and change: contested views of the Cairngorms National Park. Landscape Research. 37:451-466.
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2012.
Lead transformation to pyromorphite by fungi. Current Biology. 22:237-241.
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2012.
Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators. 23:301-311.
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2012.
Linking process to outcomes - internal and external criteria for a stakeholder involvement in River Basin Management Planning. Ecological Economics. 77:113-122.
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2012.
Lipophilic components in black currant seed and pomace extracts. European Journal of Lipid Science and Technology. 114:575-582.
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2012.
Long-term dynamics of soil C and N in intensive rice-based cropping systems of the Indo-Gangetic Plains (IGP): A modelling approach. Ecological Modelling. 232:40-63.
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2012.
Long-term spatial pattern change in a semi-arid plant community: The role of climate and composition. Acta Oecologia. 45:8-15.
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2012.
Lotus japonicus ARPC1 is required for rhizobial infection. Plant Physiology. 160:917-928.
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2012.
Macroinvertebrate abundance and proportion of trait categories in river biotopes across England and Wales. PANGEAE database Supplement to: Demars, B.O.L.; Kemp, J.L.; Friberg, N.; Usseglio-Polatera, P.; Harper, D.M. (2012): Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators.. 23:301-311.
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2012.
Male attractiveness regulates daughter fecundity non-genetically via maternal investment. Proceedings of the Royal Society of London, B.. 279:523-528.
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2012.
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2012.
Managed honey bee colony losses in Canada, China, Europe, Israel and Turkey, for the winters of 2008-9 and 2009-10. Journal of Agricultural Research. 51:91-114.
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2012.
Managing the nutrition of plants and people. Applied and Environmental Soil Science, 2012, Article id 104826, 13pp..
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2012.
Mapping of earthworm distribution for the British Isles and Eire highlights the under-recording of an ecologically important group. Biodiversity and Conservation. 21:475-485.
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2012.
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2012.
A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris L. Medic (shepherd's purse). Annals of Botany. 109:419-427.
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2012.
Mechanisms underlying the anti-proliferative effects of berry components in in vitro models of colon cancer. Current Pharmaceutical Biotechnology. 13:200-209.
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2012.
Media surface properties and the development of nitrifying biofilms in mixed cultures for wastewater treatment. Process Safety and Environmental Protection. Published online. 91:321-324.
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2012.
Metabolite profiling of maize kernels - genetic modification versus environmental influence. Journal of Agricultural and Food Chemistry. 60:3005-3012.
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2012.
Microbial response to organic matter enrichment in the oligotrophic Levantine Basin (Eastern Mediterranean). Geomicrobiology Journal. 29:648-655.
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2012.
Mind the gap: the ration of yolk androgens and antioxidants varies between sons and daughters dependent on paternal attractiveness. Behavioral Ecology and Sociobiology. 66:519-527.
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2012.
Mineralogy and chemical forms of lead and zinc in abandoned mine wastes and soils: an example from Morocco. Journal of Geochemical Exploration. 113:56-67.
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2012.
Missing links? The connection between replication and movement of plant RNA viruses Current Opinion in Virology. 2:705-711.
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2012.
Modeling self-censoring of polluter pays protest votes in stated preference research to support resource damage estimations in environmental liability. Resource and Energy Economics. 34:151-166.
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2012.
Modelling the dynamics of feral alfalfa populations and its management implications. PLoS One. 7:e39440.
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2012.
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2012.
A molecular approach to explore the extent of the threatened fungus Hypocreopsis rhododendri within wood. Fungal Biology. 116:354-362.
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2012.
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2012.
More green space is linked to less stress in deprived communities: evidence from salivary cortisol patterns. Landscape and Urban Planning. 105:221-229.
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2012.
Mountain forestry policy and strategies in response to climate change challenges: the case of the Ukrainian Carpathians. Journal of Economy and Ecology..
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2012.
Movement protein of hordeivirus interacts in vitro and in vivo with coilin, a major structural protein of Cajal bodies. Doklady Biochemistry and Biophysics. 442:57-60.
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2012.
Multi-level governance: opportunities and barriers in moving to a low-carbon Scotland. Earth and Environmental Science, Transactions of the Royal Society of Edinburgh. 103:175-186.
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2012.
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2012.
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2012.
Mutation of Arabidopsis spliceosomal timekeeper locus 1 causes circadian clock defects. The Plant Cell. 24:4066-4082.
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2012.
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2012.
Nature and nurture: The importance of seed phosphorus content. Plant and Soil. 357:1-8.
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2012.
Neuroprotective effect of blackberry (Rubus sp.) polyphenols is potentiated after simulated gastronintestinal digestion. Food Chemistry. 131:1443-1452.
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2012.
The neuroprotective potential of phenolic-enriched fractions from four juniperus species found in Portugal. Food Chemistry. 135:562-570.
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2012.
A new approach to simulating stream isotope dynamics using Markov switching autoregressive models. Advances in Water Resources. 46:20-30.
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2012.
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2012.
A new physical interpretation of plant root capacitance. Journal of Experimental Botany. 63:6149-6159.
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2012.
A newly isolated Na+/H+ antiporter gene, DmNHX1, confers salt tolerance when expressed transiently in Nicotiana benthamiana or stably in Arabidopsis thaliana. Plant Cell Tissue and Organ Culture. 110:189-200.
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2012.
Nitrogen deposition enhances moss growth but leads to an overall decline in habitat condition in mountain moss-sedge heath. Global Change Biology. 18:290-300.
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2012.
Nodulation and ecological significance of indigenous legumes in Scotland and Sweden. Symbiosis. 57:133-48.
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2012.
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2012.
Nodulation of legumes from the Thar desert of India and molecular characterization of their rhizobia. Plant and Soil. 357:227-243.
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2012.
A non-homogeneous dynamic bayesian network with sequentially coupled interaction parameters for applications in systems and synthetic biology. Statistical Applications in Genetics and Molecular Biology. 11
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2012.
A novel application of natural fluorescence to understand the sources and transport pathways of pollutants from livestock farming in small headwater catchments. Science of the Total Environment. 417:169-182.
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2012.
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2012.
A novel molecular approach for rapid assessment of soil nematode assemblages û variation, validation and potential applications. Methods in Ecology and Evolution. 3:12-23.
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2012.
Now you see it, now you don't: The challenge of detecting, monitoring and conserving ectomycorrhizal fungi. Fungal Ecology. 5:633-640.
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2012.
Nucleoli: Composition, function and dynamics (Review). Plant Physiology. 158:44-51.
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2012.
Nutrient emissions to water from septic tank systems in rural catchments: uncertainties and implications for policy. Environmental Science and Policy.. 24:71-82.
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2012.
Oceans of opportunity or stormy seas? What does the future hold for developments in European marine policy Philosophical Transactions of the Royal Society of London, A.. 370:5682-5700.
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2012.
Of organic farmers and "good farmers": changing habitus in rural England. Journal of Rural Studies. 28:232-240.
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2012.
On the role of women in bushmeat hunting - insights from Tanzania and Ethiopia. Journal of Rural Studies. 28:622-630.
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2012.
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2012.
The oomycete broad-host-range pathogen Phytophthora capsici. Molecular Plant Pathology. 13:329-337.
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2012.
Opportunities for improving phosphorus-use efficiency in crop plants. New Phytologist. 195:306-320.
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2012.
Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry. Journal of Agricultural and Food Chemistry. 60:5360-5366.
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2012.
Overstory and understory vegetation interact to alter soil community composition and activity. Plant and Soil. 352:65-84.
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2012.