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Publications list

Found 5892 results

2012
Clark KE, Hartley SE, Brennan RM, MacKenzie K, Johnson SN.  2012.  Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status. Agricultural and Forest Entomology. 14:157-163.
Davies AL.  2012.  Palaeo-environments and human experience. Archaeological Dialogues. 19:51-54.
Marion G, McInerny GJ, Pagel J, Catterall S, Cook AR, Hartig F, O'Hara RB.  2012.  Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. Journal of Biogeography. 39:2225-2239.
Zhan J, Yang L, Zhu W, Newton AC.  2012.  Pathogen populations evolve to greater race complexity in agricultural systems - evidence from analysis of Rhynchosporium secalis virulence data. PLoS ONE. 7:e38611.
Chase-Topping ME, Rosser T, Allison LJ, Courcier, Evans J, McKendrick IJ, Pearce MC, Handel I, Caprioli A, Karch H et al..  2012.  Pathogenic potential to humans of bovine Escherichia coli O26, Scotland. Emerging Infectious Diseases. 18:439-448.
Zetsche E, Bulling MT, Witte U.  2012.  Permeability of intertidal sandflats: Impact of temporal variability on sediment metabolism. Continental Shelf Research. 42:41-50.
Brown EM, McDougall GJ, Stewart D, Pereira Caro G, Gonzalez-Barrio R, Allsopp P, Magee P, Crozier A, Rowland I, Gill CIR.  2012.  Persistence of anticancer activity in berry extracts after simulated gastrointestinal digestion and colonic fermentation. PLoS ONE. 7:e49740.
Greer E, Martin AC, Pendle A, Colas I, Jones AME, Moore G, Shaw P.  2012.  The Ph1 locus suppresses Cdk2-type activity during premeiosis and meiosis in wheat. The Plant Cell. 24:152-162.
Burthe S, Daunt F, Butler A, Elston DA, Frederiksen M, Johns D, Newell M, Thackeray SJ, Wanless S.  2012.  Phenological trends and trophic mismatch across multiple levels of a North Sea pelagic food web. International Journal of Plant Genomics. 454:119-133.
Roberts WM, Stutter MI, Haygarth PM.  2012.  Phosphorus retention and remobilization in vegetated buffer strips: a review. Journal of Environmental Quality. 41:389-399.
McIntosh FM, Maison N, Holtrop G, Young P, Stevens VJ, Ince J, Johnstone AM, Lobley GE, Flint HJ, Louis P.  2012.  Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology. 14:1876-1887.
Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ et al..  2012.  A physical, genetic and functional sequence assembly of the barley genome. Nature. 491:711-716.
Wallace JM, Horgan GW, Bhattacharya S.  2012.  Placental weight and efficiency in relation to maternal body mass index and the risk of pregnancy complications in women delivering singleton babies. Placenta. 33:611-618.
Chichkova NV, Tuzhikov AI, Taliansky ME, Vartapetian AB.  2012.  Plant phytaspases and animal caspases: structurally unrelated death proteases with a common role and specificity. Physiologia Plantarum. 145:77-84.
Kerchev P, Fenton B, Foyer CH, Hancock RD.  2012.  Plant responses to insect herbivory: interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways (Review). Plant Cell and Environment. 35:441-453.
Cowan GH, Roberts AG, Chapman SN, Ziegler A, Savenkov EI, Torrance L.  2012.  The potato mop-top virus TGB2 protein and viral RNA associate with chloroplasts and viral infection induces inclusions in the plastids. Frontiers in Plant Science. 3
Vinh NC, Oborn I, Ha PQ, Minh ND, Hough RL, Khai NM, Thuy LT.  2012.  Potential environment and public health risk due to contamination of heavy metals from industrial waste water in Lam Thao, Phu Tho, Vietnam. American Journal of Environmental Sciences. 8:71-78.
Hartley IP, Garnett MH, Sommerkorn M, Hopkins DW, Fletcher BJ, Sloan VL, Phoenix GK, Wookey PA.  2012.  A potential loss of carbon associated with greater plant growth in the European Arctic. Nature Climate Change. 2:875-879.
Merz U, Lees AK, Sullivan L, Schwarzel R, Hebeisen T, Kirk HG, Bouchek-Mechiche K, Hofferbert HR.  2012.  Powdery scab resistance in Solanum tuberosum: an assessment of cultivar x environment effect. Plant Pathology. 61:29-36.
Gao W, Ren T, Bengough AG, Auneau L, Watts CW, Whalley WR.  2012.  Predicting penetrometer resistance from the compression characteristic of soil. Soil Science Society of America Journal. 76:361-369.
Aitkenhead MJ, Coull MC, Towers W, Hudson G, Black HIJ.  2012.  Predicting soil chemical composition and other soil parameters from field observations using a neural network. Computers and Electronics in Agriculture. 82:108-116.
Nielsen UN, Osler GHR, Campbell CD, Burslem DFRP, van der Wal R.  2012.  Predictors of fine-scale spatial variation in soil mite and microbe community composition differ between biotic groups and habitats. Pedobiologia. 55:83-91.
Slee B.  2012.  Present opportunities for sustainable and multifunctional forest management for the development of rural areas. L’Italia Forestale e Montana. 67:147-160.
Avery LM, Booth P, Campbell CD, Tompkins D, Hough RL.  2012.  Prevalence and survival of potential pathogens in source segregated green waste compost. Science of the Total Environment. 431:128-138.
Humphry RW, Bruelisauer F, McKendrick IJ, Nettleton PF, Gunn GJ.  2012.  Prevalence of antibodies to bovine viral diarrhoea virus in bulk tank milk and associated risk factors in Scottish dairy herds. Veterinary Record. 171:445..
Urquhart J, Courtney P, Slee W.  2012.  Private woodland owners' perspectives on multifunctionality in English woodlands. Journal of Rural Studies. 28:95-106.
Wheelhouse NM, Sait M, Aitchison K, Livingstone M, Wright F, McLean K, Inglis NF, Smith DGE, Longbottom D.  2012.  Processing of chlamydia abortus polymorphic membrane protein 18D during the chlamydial developmental cycle. PLoS ONE. 7:e49190.
Arts K, Fischer A, van der Wal R.  2012.  The promise of wilderness between paradise and hell: a cultural-historical exploration of a Dutch National Park. Landscape Research. 37:239-256.
Johnson SN, Young MW, Karley AJ.  2012.  Protected raspberry production alters aphid-plant interactions but not aphid population size. Agricultural and Forest Entomology. 14:217-224.
Bragg JG, Quigg A, Raven JA, Wagner A.  2012.  Protein elemental sparing and codon usage bias are correlated among bacteria. Molecular Ecology. 21:2480-2487.
Lloyd LJ, Foster T, Rhodes P, Rhind SM, Gardner DS.  2012.  Protein energy malnutrition during early gestation in sheep blunts fetal renal vascular and nephron development and compromises adult renal function. Journal of Physiology. 590:377-393.
Raven JA.  2012.  Protein turnover and plant RNA and phosphorus requirements in relation to nitrogen fixation. Plant Science. 188-189:25-35.
Hughes V, Garcia-Sanchez A, Smith S, McLean K, Lainson A, Nath M, Stevenson K.  2012.  Proteome-determined type-specific proteins of Mycobacterium avium subspecies paratuberculosis. Veterinary Microbiology. 158:153-162.
Bennett AE.  2012.  Pushing boundaries in above-belowground interactions. Functional Ecology. 26:305-306.
Ryan CM, Hill T, Woollen E, Ghee C, Mitchard E, Cassells G, Grace J, Woodhouse IH, Williams M.  2012.  Quantifying small-scale deforestation and forest degradation in African woodlands using radar imagery. Global Change Biology. 18:243-257.
Denwood MJ, Love S, Innocent GT, Matthews L, McKendrick IJ, Hillary N, Smith A, Reid SWJ.  2012.  Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method. Veterinary Parasitology. 188:120-126.
Foito A, Hackett CA, Byrne SL, Stewart D, Barth S.  2012.  Quantitative trait loci analysis to study the genetic regulation of non-polar metabolites in perennial ryegrass. Metabolomics. 11:412-424.
Ponce-Molina LJ, Casas AM, Gracia MP, Silvar C, Mansour E, Thomas WTB, Schweizer G, Herz M, Igartua E.  2012.  Quantitative trait loci and candidate loci for heading date in a large population of a wide barley cross. Crop Science. 52:2469-2480.
Wening S, Croxford AE, Ford CS, Thomas WTB, Forster BP, Okyere-Boateng G, Nelson SPC, Caligari PDS, Wilkinson MJ.  2012.  Ranking the value of germplasm: new oil palm (Elaeis guineensis) breeding stocks as a case study. Annals of Applied Biology. 160:145-156.
McGavin WJ, Mitchell C, Cock PJA, Wright KM, MacFarlane SA.  2012.  Raspberry leaf blotch virus, a putative new member of the genus Emaravirus, encodes a novel genomic RNA. Journal of General Virology. 93:430-437.
McMenemy LS, Hartley SE, MacFarlane SA, Karley AJ, Shepherd T, Johnson SN.  2012.  Raspberry viruses manipulate the behaviour of their insect vectors. Entomologia Experimentalis et Applicata. 144:56-68.
Stopher KV, Nussey DH, Clutton-Brock TH, Guinness F, Morris A, Pemberton JM.  2012.  Re-mating across years and intralineage polygyny are associated with greater than expected levels of inbreeding in wild red deer. Journal of Evolutionary Biology. 25:2457-2469.
Stutter MI, Shand CA, George TS, Blackwell MSA, Bol R, Mackay RL, Richardson AE, Condron LM, Turner BL, Haygrath PM.  2012.  Recovering phosphorus from soil - A root solution? Environmental Science and Technology. 46:1977-1978.
Arts K, Fischer A, van der Wal R.  2012.  Reintroducing charismatic species to Scotland: the rhetoric and politics of a 21st century agenda. ECOS. 33:61-67.
Dunn SM, Brown I, Sample J, Post H.  2012.  Relationships between climate, water resources, land use and diffuse pollution and the significance of uncertainty in climate change. Journal of Hydrology. 434:19-35.
Stutter MI, Richards S.  2012.  Relationships between soil physicochemical, microbiological properties, and nutrient release in buffer soils compared to field soils. Journal of Environmental Quality. 41:400-409.
Kang IM, Hillier S, Song Y, Kim IJ.  2012.  Relative coherent stacking potential of fundamental particles of illite-smectite and its relationship to geological environment. Clay Minerals. 47:319-327.
Engelhardt S, Boevink PC, Armstrong MR, Ramos M, Hein I, Birch PRJ.  2012.  Relocalization of late blight resistance protein R3a to endosomal compartments is associated with effector recognition and required for the immune response. The Plant Cell. 24:5142-5158.
Haregeweyn N, Melese B, Tsunekawa A, Tsubo M, Meshesha D, Balana B.  2012.  Reservoir sedimentation and its mitigating strategies: a case study of Angereb reservoir (NW Ethiopia). Journal of Soil and Sediments. 12:291-305.
Mayor DJ, Thornton B, Hay S, Zuur AF, Nicol GW, McWilliam JM, Witte UFM.  2012.  Resource quality affects carbon cycling in deep-sea sediments. ISME Journal. 6:1740-1748.
Mayor DJ, Thornton B, Zuur AF.  2012.  Resource quantity affects benthic microbial community structure and growth efficiency in a temperate intertidal mudflat. PLoS ONE. 7:e38582.
Sutherland LA.  2012.  Return of the gentleman farmer?: conceptualising gentrification in UK agriculture Journal of Rural Studies. 28:568-576.
Schulte RPO, Fealy R, Creamer RE, Towers W, Harty T, Jones RJA.  2012.  A review of the role of excess soil moisture conditions in constraining farm practices under Atlantic conditions. Soil Use and Management. 28:580-589.
Dahlin AS, Edwards AC, Lindstrom BEM, Ramezanian A, Shand CA, Walker RL, Watson CA, Oborn I.  2012.  Revisiting herbage sample collection and preparation procedures to minimise risks of trace element contamination. European Journal of Agronomy. 43:33-39.
Houston K, Wolff K.  2012.  Rhinanthus minor population genetic structure and subspecies: Potential seed sources of a keystone species in grassland restoration projects. Perspectives in Plant Ecology Evolution and Systematics. 14:423-433.
Tan HW, Weir BS, Carter N, Heenan PB, Ridgway HJ, James EK, Sprent JI, Young JPW, Andrews M.  2012.  Rhizobia with 16S rRNA and nifH similar to Mesorhizobium huakuii but Novel recA, glnII, nodA and nodC genes are symbionts of New Zealand Carmichaelinae. PLoS ONE, e47677. 7
Avrova AO, Knogge W.  2012.  Rhynchosporium commune: a persistent threat to barley cultivation. Molecular Plant Pathology. 13:986-997.
Stutter MI, Chardon WJ, Kronvang B.  2012.  Riparian buffer strips as a multifunctional management tool in agricultural landscapes: introduction. Journal of Environmental Quality. 41:297-303.
Cole LJ, Brocklehurst S, Elston DA, McCracken DI.  2012.  Riparian field margins: can they enhance the functional structure of ground beetle (Coleoptera: Carabidae) assemblages in intensively managed grassland landscapes? Journal of Applied Ecology. 49:1384-1395.
Cole LJ, Brocklehurst S, McCracken DI, Harrison W, Robertson D.  2012.  Riparian field margins: their potential to enhance biodiversity in intensively managed grasslands. Insect Conservation and Diversity. 5:86-94.
Hough RL, Booth P, Avery LM, Rhind SM, Crews C, Bacon J, Campbell CD, Tompkins D.  2012.  Risk assessment of the use of PAS100 green composts in sheep and cattle production in Scotland. Waste Management. 32:117-130.
Bradford RA, O'Sullivan JJ, van der Craats IM, Krywkow J, Rotko P, Bonaiuto M, Waylen K, Schelfaut K.  2012.  Risk perception - Issues for flood management in Europe. Natural Hazards and Earth System Sciences. 12:2299-2309.
Demars BOL, Potts J, Tremolieres M, Thiebaut G, Gougelin N, Nordmann V.  2012.  River macrophyte indices: not the Holy Grail!. Freshwater Biology. 57:1745-1759.
Gonzalez I, Rakitina DV, Semashko MA, Taliansky ME, Praveen S, Palukaitis P, Carr JP, Kalinina N, Canto T.  2012.  RNA binding is more critical to the suppression of silencing function of Cucumber mosaic virus 2b protein than nuclear localization. RNA. 18:771-782.
James EK, Baldani JI.  2012.  The role of biological nitrogen fixation by non-legumes in the sustainable production of food and biofuels. Plant and Soil. 356:1-3.
Seresinhe T, Madushika SAC, Seresinhe Y, Lal PK, Orskov ER.  2012.  The role of free radicals in brassica-induced anaemia of sheep: an ESR spin trapping study. Asian-Australiasian Journal of Animal Sciences. 25:1404-1410.
Dunn SM, Darling WG, Birkel C, Bacon JR.  2012.  The role of groundwater characteristics in catchment recovery from nitrate pollution. Hydrology Research. 43:560-575.
Matthies E, Selge S, Klockner CA.  2012.  The role of parental behaviour for the development of behaviour specific environmental norms - the example of recycling and re-use behaviour. Journal of Environmental Psychology. 32:277-284.
Charkowski A, Blanco C, Condemine G, Expert D, Franza T, Hayes C, Hugouvieux-Cotte-Pattat N, Lopez Solanilla E, Low D, Moleleki L et al..  2012.  The role of secretion systems and small molecules in soft-rot enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50:425-449.
Bengough AG.  2012.  Root elongation is restricted by axial but not by radial pressures: so what happens in field soil? Plant and Soil. 360:15-18.
Graham SL, Millard P, Hunt JE, Rogers GND, Whitehead D.  2012.  Roots affect the response of heterotrophic soil respiration to temperature in tussock grass microcosms. Annals of Botany. 110:253-258.
Ibarra JT, Galvez N, Gimona A, Altamirano TA, Rojas I, Hester AJ, Laker AJ, Bonacic C.  2012.  Rufous-legged owl (Strix rufipes) and Austral pygmy owl (Glaucidium nanum) stand use in a gradient of disrupted and old growth Andean temperate forests, Chile. Studies on Neotropical Fauna and Environment. 47:33-40.
Nicholson A, Wilkinson ME, O'Donnell G, Quinn PF.  2012.  Runoff attenuation features: a sustainable flood mitigation strategy in the Belford catchment, UK. Area. 44:463-469.
Wooldridge S, Done T, Thomas C, Gordon IJ, Marshall P.  2012.  Safeguarding coastal coral communities on the central Great Barrier Reef (Australia) against climate change: realizable local and global actions. Climatic Change. 112:945-961.
Littlewood NA, Stewart AJA, Woodcock BA.  2012.  Science into practice - how can fundamental science contribute to better management of grasslands for invertebrates? Insect Conservation and Diversity. 5:1-8.
Slee B, Feliciano D, Nijnik M, Pajot G.  2012.  The scope of the land-based sector to mitigate climate change in North-east Scotland: opportunities and challenges with particular reference to the role of forests. International Journal of Environment and Sustainable Development.. 11:274-292.
Street LE, Stoy PC, Sommerkorn M, Fletcher BJ, Sloan VL, Hill TC, Williams M.  2012.  Seasonal bryophyte productivity in the sub-Arctic: a comparison with vascular plants. Functional Ecology. 26:365-378.
Shand CA, Eriksson J, Dahlin S, Lumsdon DG.  2012.  Selenium concentrations in national inventory soils from Scotland and Sweden and their relationships with geochemical factors. Journal of Geochemical Exploration. 121:4-14.
Wilson K, Sammin D, Harmeyer S, Nath M, Livingstone M, Longbottom D.  2012.  Seroprevalence of chlamydial infection in cattle in Ireland. Veterinary Journal. 193:583-585.
Brown KM.  2012.  Sharing public space across difference: attunement and the contested burdens of choreographing encounter. Social and Cultural Geography. 13:801-820.
Matthews R, de Pinto A.  2012.  Should REDD+ fund "sustainable intensification" as a means of reducing tropical deforestation? Carbon Management. 3:117-120.
Templer PH, Mack MC, Chapin FS, Christenson LM, Compton JE, Crook HD, Currie WS, Curtis CJ, Dail DB, D'Antonio CM et al..  2012.  Sinks for nitrogen inputs in terrestrial ecosystems: a meta-analysis of N-15 tracer field studies. Ecology. 93:1816-1829.
Busby J, Duckett D.  2012.  Social risk amplification as an attribution: the case of zoonotic disease outbreaks. Journal of Risk Research. 15:1049-1074.
Veresoglou SD, Thornton B, Menexes G, Mamolos AP, Veresoglou DS.  2012.  Soil fertilization leads to a decline in between-samples variability of microbial community delta C-13 profiles in a grassland fertilization experiment. PLoS ONE. 7:e44203.
Dennis PG, Rushton SP, Laudicina VA, Daniell TJ, Ord V, Newsham KK, O'Donnell AG, Hopkins DW.  2012.  Soil fungal community composition does not alter along a latitudinal gradient through the maritime and sub-Antarctic. Fungal Ecology. 5:403-408.
Bouma J, Broll G, Crane TA, Dewitte O, Gardi C, Schulte R, Towers W.  2012.  Soil information in support of policy making and awareness raising. Current Opinion in Environmental Sustainability. 4:1-7.
White PJ, Crawford J, Alvarez MCD, Moreno RG.  2012.  Soil management for sustainable agriculture (Editorial). Applied and Environmental Soil Science. 2012
Giles M, Morley N, Baggs EM, Daniell TJ.  2012.  Soil nitrate reducing processes - drivers, mechanisms for spatial variation, and significance for nitrous oxide production. Frontiers in Microbiology. 3:407.
Valentine TA, Hallett PD, Binnie K, Young MW, Squire GR, Hawes C, Bengough AG.  2012.  Soil strength and macropore volume limit root elongation rates in many UK agricultural soils. Annals of Botany. 110:259-270.
Newton AC, Guy DC, Bengough AG, Gordon DC, McKenzie BM, Sun B, Valentine TA, Hallett PD.  2012.  Soil tillage effects on the efficacy of cultivars and their mixtures in winter barley. Field Crops Research. 128:91-100.
Broadley MR, White PJ.  2012.  Some elements are more equal than others: soil-to-plant transfer of radiocaesium and radiostrontium, revisited. Plant and Soil. 355:23-27.
Edwards AC, Watson HA, Cook YEM.  2012.  Source strengths, transport pathways and delivery mechanisms of nutrients, suspended solids and coliforms within a small agricultural headwater catchment. Science of the Total Environment. 434:123-129.
Pickles BJ, Genney DR, Anderson IC, Alexander IJ.  2012.  Spatial analysis of ectomycorrhizal fungi reveals that root tip communities are structured by competitive interactions. Molecular Ecology. 21:5110-5123.
Poggio L, Gimona A, Brown I.  2012.  Spatio-temporal MODIS EVI gap filling under cloud cover: an example in Scotland. ISPRS Journal of Photogrammetry and Remote Sensing. 72:56-72.
Higgins JD, Perry RM, Barakate A, Ramsay L, Waugh R, Halpin C, Armstrong SJ, Franklin FCH.  2012.  Spatiotemporal asymmetry of the meiotic program underlies the predominantly distal distribution of meiotic crossovers in barley. Plant Cell. 24:4096-4109.
van der Heijden G, Song Y, Horgan G, Polder G, Dieleman A, Bink M, Palloix A, van Eeuwijk F, Glasbey C.  2012.  SPICY: towards automated phenotyping of large pepper plants in the greenhouse. Functional Plant Biology. 39:870-877.
Nelson SE, Tisdall JM, Wilkinson K, Smith SE, McKenzie BM.  2012.  Stabilisation of soil against wind erosion by six saprotrophic fungi. Soil Biology and Biochemistry. 50:134-141.
Puttock A, Dungait JAJ, Bol R, Dixon ER, Macleod CJA, Brazier RE.  2012.  Stable carbon isotope analysis of fluvial sediment fluxes over two contrasting C4-C3 semi-arid vegetation transitions. Rapid Communications in Mass Spectrometry. 26:2386-2392.
Beattie JH, Gordon M, Duthie SJ, McNeil CJ, Horgan GW, Nixon GF, Feldmann J, Kwun I.  2012.  Suboptimal dietary zinc intake promotes vascular inflammation and atherogenesis in a mouse model of atherosclerosis. Molecular Nutrition and Food Research. 56:1097-1105.
Deeks MJ, Calcutt JR, Ingle EKS, Hawkins TJ, Chapman SN, Richardson AC, Mentlak DA, Dixon MR, Cartwright F, Smertenko AP et al..  2012.  A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Current Biology. 22:1595-1600.
Burgess CGS, Bartley Y, Redman E, Skuce PJ, Nath M, Whitelaw F, Tait A, Gilleard JS, Jackson F.  2012.  A survey of the trichostrongylid nematode species present on UK sheep farms and associated anthelmintic control practices. Veterinary Parasitology. 189:299-307.
Macdiarmid JI, Kyle J, Horgan GW, Loe J, Fyfe C, Johnstone A, McNeill G.  2012.  Sustainable diets for the future: can we contribute to reducing greenhouse gas emissions by eating a healthy diet? American Journal of Clinical Nutrition. 96:632-639.
Bizikova L, Nijnik M, Kluvanokova-Oravska T.  2012.  Sustaining multifunctional forestry through the developing of social capital and promoting participation: A case of multiethnic mountain communities. Small Scale Forestry Journal. 11:301-319.
Gorelkin P, Kalinina N, Love A, Makarov V, Taliansky M, Yaminsky I.  2012.  Synthesis of nanoparticles using plants. Nanoindustry. 7:16-22.
Smith P, Albanito F, Bell M, Bellarby J, Blagodatskiy S, Datta A, Dondini M, Fitton N, Flynn H, Hastings A et al..  2012.  Systems approaches in global change and biogeochemistry research. Philosophical Transactions of the Royal Society. Series B. Biological Sciences.. 367:311-321.
Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W.  2012.  A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis. The Plant Cell. 24:3506-3529.
Bergfur J, Demars BOL, Stutter MI, Langan SJ, Friberg N.  2012.  The Tarland Catchment Initiative and its effect on stream water quality and macroinvertebrate indices. Journal of Environmental Quality. 41:314-321.
White PJ, Broadley MR, Thompson JA, McNicol JW, Crawley MJ, Poulton PR, Johnston AE.  2012.  Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment. New Phytologist. 196:101-109.
Tilsner J, Linnik O, Wright KM, Bell K, Roberts AG, Lacomme C, Santa Cruz S, Oparka KJ.  2012.  The TGB1 movement protein of potato virus X reorganises actin and endomembranes into the X--body, a viral replication factory. Plant Physiology. 158:1359-1370.
Clemente MR, Bustos-Sanmamed P, Loscos J, James EK, Perez-Rontome C, Navascues J, Gay M, Becana M.  2012.  Thiol synthetases of legumes: immunogold localization and differential gene regulation by phytohormones. Journal of Experimental Botany. 63:3923-3934.
Dai F, Nevo E, Wu DZ, Comadran J, Zhou MX, Qiu L, Chen ZH, Beiles A, Chen GX, Zhang GP.  2012.  Tibet is one of the centers of domestication of cultivated barley. Proceedings of the National Academy of Sciences, USA. 109:16969-16973.
Sato S, Tabata S, Hirakawa H, Asamizu E, Shirasawa K, Isobe S, Bryan G, et al..  2012.  The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485:635-641.
Mansfield J, Genin S, Magori S, Citovsky V, Sriariyanum M, Ronald P, Dow M, Verdier V, Beer SV, Machado MA et al..  2012.  Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology. 13:614-629.
Halliday AM, Lainson FA, Yaga R, Inglis NF, Bridgett S, Nath M, Knox DP.  2012.  Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
Zysko A, Sanguin H, Hayes A, Wardleworth L, Zeef L, Sim A, Paterson E, Singh BK, Kertesz MA.  2012.  Transcriptional response of Pseudomonas aeruginosa to a phosphate-deficient Lolium perenne rhizosphere. Plant and Soil. 359:25-44.
Marquez Y, Brown JWS, Simpson CG, Barta A, Kalyna M.  2012.  Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Research. 22:1184-1195.
Podevin N, Devos Y, Davies HV, Nielsen KM.  2012.  Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
Downie H, Holden N, Otten W, Spiers AJ, Valentine TA, Dupuy LX.  2012.  Transparent soil for imaging the rhizosphere. PLoS ONE. 7:e44276.
Nwankno AJ, Gordon SL, Verrall SR, Brennan RM, Hancock RD.  2012.  Treatment with fungicides influences phytochemical quality of blackcurrant juice. Annals of Applied Biology. 160:86-96.
Sutherland LA, Burton RJF, Ingram J, Blackstock KL, Slee B, Gotts N.  2012.  Triggering change: towards a conceptualisation of major change processes in farm decision-making. Journal of Environmental Management. 104:142-151.
Buijs A, Hovardas T, Castro P, Devine-Wright P, Figari H, Fischer A, Mouro C, Selge S.  2012.  Understanding people's ideas on natural resource management: research on social representations of nature. Society and Natural Resources.. 25:1167-1181.
Peukert S, Bol R, Roberts W, Macleod CJA, Murray PJ, Dixon ER, Brazier RE.  2012.  Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments. Rapid Communications in Mass Spectrometry. 26:2413-2421.
van de Weerd HA, Seaman S, Wheeler K, Goddard PJ, McLean B.  2012.  Use of artificial drinkers by unhandled semi-feral ponies. Applied Animal Behaviour Science. 139:86-95.
Aitkenhead MJ, Owen M, Chambers DM.  2012.  Use of artificial neural networks in measuring characteristics of shielded radioactive plutonium for arms control. Journal of Analytical Atomic Spectrometry.. 27:432-439.
O'Brien SH, Webb A, Brewer MJ, Reid JB.  2012.  Use of kernel density estimation and maximum curvature to set Marine Protected Area boundaries: identifying a Special Protection Area for wintering red-throated divers in the UK. Biological Conservation. 156:15-21.
Hoggard N, Cruickshank M, Moar KM, Bashir S, Mayer CD.  2012.  Using gene expression to predict differences in the secretome of human omental vs. subcutaneous adipose tissue. Obesity. 20:1158-1167.
NicDaéid NN, Meier-Augenstein W, Kemp HF, Sutcliffe OB.  2012.  Using isotopic fractionation to link precursor to product in the synthesis of (±)-mephedrone. A new tool for combating 'legal high' drugs. Analytical Chemistry. 84:8691-8696.
Kutt AJ, Gordon IJ.  2012.  Variation in terrestrial mammal abundance on pastoral and conservation land tenures in north-eastern Australian tropical savannas. Animal Conservation. 15:416-425.
Swanston JS, Smith PL, Agu RC, Brosnan JM, Bringhurst TA, Jack FR.  2012.  Variation, across environments within the UK, in grain protein and grain hardness, in wheat varieties of differing distilling quality. Field Crops Research. 127:146-152.
Bengough AG.  2012.  Water dynamics of the root zone: Rhizosphere biophysics and its control on soil hydrology. Vadose Zone Journal. 11
Brown KM, Dilley R.  2012.  Ways of knowing for "response-ability" in more-than-human encounters: the role of anticipatory knowledges in outdoor access with dogs. Area. 44:37-45.
Baxter E, Jarvis S, Palarea-Albaladejo J, Edwards SA.  2012.  The weaker sex? The propensity for male-biased piglet mortality PLoS ONE. 7:e30318.
Brown LK, George TS, Thompson JA, Wright GM, Lyon J, Dupuy L, Hubbard SF, White PJ.  2012.  What are the implications of variation in root hair length on tolerance to phosphorus deficiency in combination with water stress in barley (Hordeum vulgare)? Annals of Botany. 110:319-328.
Gordon IJ, Acevedo-Whitehouse K, Altwegg R, Garner TWJ, Gompper ME, Katzner TE, Pettorelli N, Redpath S.  2012.  What the "food security" agenda means for animal conservation in terrestrial ecosystems. Animal Conservation. 15:115-116.
Gimona A, Poggio L, Brown I, Castellazzi M.  2012.  Woodland networks in a changing climate: Threats from land use change. Biological Conservation. 149:93-102.
Bingham IJ, Hoad SP, Thomas WTB, Newton AC.  2012.  Yield response to fungicide of spring barley genotypes differing in disease susceptibility and canopy structure. Field Crops Research. 139:9-19.
Dinnie E, Browne K.  2012.  You again - what are you researching this time? can you ever "leave the field"? Fieldwork in Religion. 7:164-179.
2011
Bouwman FG, de Roos B, Rubio-Aliaga I, Crosley LK, Duthie SJ, Mayer CD, Horgan GW, Polley AC, Heim C, Coort SLM et al..  2011.  2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting. BMC Medical Genomics. 4
Holobinko A, Meier-Augenstein W, Kemp HF, Prowse T, Ford SM.  2011.  2H stable isotope analysis of human tooth enamel: a new tool for forensic human provenancing? Rapid Communications in Mass Spectrometry. 25:910-916.
Mayor DJ, Cook K, Thornton B, Walsham P, Witte UFM, Zuur AF, Anderson TR.  2011.  Absorption efficiencies and basal turnover of C, N and fatty acids in a marine Calanoid copepod. Functional Ecology. 25:509-518.
Hill PW, Quilliam RS, DeLuca TH, Farrar J, Farrell M, Roberts P, Newsham KK, Hopkins DW, Bardgett RD, Jones DL.  2011.  Acquisition and assimilation of nitrogen as peptide-bound and D-enantiomers of amino acids by wheat. PLoS ONE. 6:e19220.
Sun XL, Gilroy EM, Chini A, Nurmberg PL, Hein I, Lacomme C, Birch PRJ, Hussain A, Yun BW, Loake GJ.  2011.  ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance. New Phytologist. 192:471-482.
Thirugnanasambandam A, Wright KM, Havis ND, Whisson SC, Newton AC.  2011.  Agrobacterium-mediated transformation of the barley pathogen Ramularia collo-cygni with fluorescent marker tags and live tissue imaging of infection development. Plant Pathology. 60:929-937.
Raven JA, Giordano M, Beardall J, Maberly SC.  2011.  Algal and aquatic plant carbon concentrating mechanisms in relation to environmental change. Photosynthesis Research. 109:281-296.
Spies A, Korzun V, Bayles R, Rajaraman J, Hedley PE, Schweizer P.  2011.  Allele mining in barley genetic resources reveals genes of race-nonspecific powdery mildew resistance. Frontiers in Plant Science: Plant Nutrition. 2:e113.
Paterson E, Neilson R, Midwood AJ, Osborne SM, Sim A, Thornton B, Millard P.  2011.  Altered food web structure and C-flux pathways associated with mineralisation of organic amendments to agricultural soil. Applied Soil Ecology. 48:107-116.
Khalid A, Arshad M, Anjum M, Mahmood T, Dawson LA.  2011.  The anaerobic digestion of solid organic waste. Waste Management. 31:1737-1744.
Ode A, Miller DR.  2011.  Analysing the relationship between indicators of landscape complexity and preference. Environment and Planning B. 38:24-40.
Russell JR, Dawson IK, Flavell AJ, Steffenson B, Weltzien E, Booth A, Ceccarelli S, Grando S, Waugh R.  2011.  Analysis of >1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes. New Phytologist. 191:564-578.
Yong SYC, Choong CY, Cheong PL, Pang SL, Amalina RN, Harikrishna JA, Mat-Isa MN, Hedley PE, Milne L, Vaillancourt RE et al..  2011.  Analysis of ESTs generated from inner bark tissue of an Acacia auriculiformis x Acacia mangium hybrid. Tree Genetics and Genomes. 7:143-152.
Kalendar R, Flavell AJ, Ellis THN, Sjakste T, Moisy C, Schulman AH.  2011.  Analysis of plant diversity with retrotransposon-based molecular markers. Heredity. 106:520-530.
Debeljak M, Squire GR, Kocev D, Hawes C, Young MW, Dzeroski S.  2011.  Analysis of time series data on agroecosystem vegetation using predictive clustering trees. Ecological Modelling. 222:2524-2529.
Nwosu F, Morris J, Lund VA, Stewart D, Ross HA, McDougall GJ.  2011.  Anti-proliferative and potential anti-diabetic effects of phenolic-rich extracts from edible marine algae. Food Chemistry. 126:1006-1012.
Knapp CW, McCluskey SM, Singh BK, Campbell CD, Hudson G, Graham DW.  2011.  Antibiotic resistance gene abundances correlate with metal and geochemical conditions in archived Scottish soils. PLoS ONE. 6:e27300.
Martin-Ortega J, Brouwer R, Aiking H.  2011.  Application of a value based equivalency method to assess environmental damage compensation under the European Environmental Liability Directive. Journal of Environmental Management. 92:1461-1470.
Davison J, Opik M, Daniell TJ, Moora M, Zobel M.  2011.  Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages. FEMS Microbiology Ecology. 78:103-115.
Barrett G, Campbell CD, Fitter AH, Hodge A.  2011.  The arbuscular mycorrhizal fungus Glomus hoi can capture and transfer nitrogen from organic patches to its associated host plant at low temperature. Applied Soil Ecology. 48:102-105.
Rosling A, Cox F, Cruz-Martinez K, Ihrmark K, Grelet GA, Lindahl BD, Menkis A, James TY.  2011.  Archaeorhizomycetes: unearthing an ancient class of ubiquitous soil fungi. Science. 333:876-879.
Lennon JJ, Beale CM, Reid CL, Kent M, Pakeman RJ.  2011.  Are richness patterns of common and rare species equally well explained by environmental variables? Ecography. 34:529-539.
Mitchell C, Brennan RM, Cross JV, Johnson SN.  2011.  Arthropod pests of currant and gooseberry crops in the UK: their biology, management and future prospects. Agricultural and Forest Entomology. 13:221-237.
Farmer J, Matthews R, Smith JU, Smith P, Singh BK.  2011.  Assessing existing peatland models for their applicability for modelling greenhouse gas emissions from tropical peat soils. Current Opinion in Environmental Sustainability. 3:339-349.
Perez-Espona S, Perez-Barberia FJ, Pemberton JM.  2011.  Assessing the impact of past wapiti introductions into Scottish Highland red deer populations using a Y chromosome marker. Mammalian Biology. 76:640-643.
McDougall GJ, Martinussen I, Junttila O, Verrall SR, Stewart D.  2011.  Assessing the influence of genotype and temperature on polyphenol composition in cloudberry (Rubus chamaemorus L) using a novel mass spectrometric method. Journal of Agricultural and Food Chemistry. 59:10860-10868.
Armitage HF, Britton AJ, Woodin SJ, van der Wal R.  2011.  Assessing the recovery potential of alpine moss-sedge heath: reciprocal transplants along a nitrogen deposition gradient. Environmental Pollution. 159:140-147.
Wuyts N, Bengough AG, Roberts TJ, Du C, Bransby MF, McKenna SJ, Valentine TA.  2011.  Automated motion estimation of root responses to sucrose in two Arabidopsis thaliana genotypes using confocal microscopy. Planta. 234:769-784.
Aitkenhead MJ, Aalders IH.  2011.  Automating land cover mapping of Scotland using expert system and knowledge integration methods. Remote Sensing of Environment. 115:1285-1295.
Buttoud G, Kouplevatskaya-Buttoud I, Slee B, Weiss G.  2011.  Barriers to institutional learning and innovations in the forest sector in Europe: Markets, policies and stakeholders. Forest Policy and Economics. 13:124-131.
Lawson DJ, Holtrop G, Flint H.  2011.  Bayesian analysis of non-linear differential equation models with application to a gut microbial ecosystem. Biometrical Journal. 53:543-556.
Cornulier T, Robinson RA, Elston DA, Lambin X, Sutherland WJ, Benton T.  2011.  Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution. 2:86-94.
Horgan GW.  2011.  The behaviour of a neutral model of weight regulated only by body mass. Journal of Theoretical Biology. 270:1-6.
Grussu D, Stewart D, McDougall GJ.  2011.  Berry polyphenols inhibit a-amylase in vitro: Identifying active components in rowanberry and raspberry. Journal of Agricultural and Food Chemistry. 59:2324-2331.
Prior GL, Evans DM, Thirgood SJ, Redpath S, Monaghan P.  2011.  Birds bias offspring sex ratio in response to livestock grazing. Biology Letters. 7:958-960.
Dolan A, MacFarlane SA, McGavin WJ, Brennan RM, McNicol JW.  2011.  Blackcurrant reversion virus: validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants. Journal of Berry Research. 1:201-208.
Xin GS, Long RJ, Guo XS, Irvine RJ, Ding LM, Ding LL, Shang ZH.  2011.  Blood mineral status of grazing Tibetan sheep in the Northeast of the Qinghai-Tibetan Plateau. Livestock Science. 136:102-107.
Palacio S, Paterson E, Sim A, Hester AJ, Millard P.  2011.  Browsing affects intra-ring carbon allocation in species with contrasting wood anatomy. Tree Physiology. 31:150-159.
Speed JDM, Austrheim G, Hester AJ, Mysterud A.  2011.  Browsing interacts with climate to determine tree-ring increment. Functional Ecology. 25:1018-1023.
Thornton B, Zhang ZL, Mayes RW, Hogberg MN, Midwood AJ.  2011.  Can gas chromatography combustion isotope ratio mass spectrometry be used to quantify organic compound abundance? Rapid Communications in Mass Spectrometry. 23:2433-2438.
Beesley L, Dickinson N.  2011.  Carbon and trace element fluxes in the pore water of an urban soil following greenwaste compost, woody and biochar amendments, inoculated with the earthworm Lumbricus terrestris. Soil Biology and Biochemistry. 43:188-196.
Cooper JM, Burton D, Daniell TJ, Griffiths BS, Zebarth BJ.  2011.  Carbon mineralization kinetics and soil biological characteristics as influenced by manure addition in soil incubated at a range of temperatures. European Journal of Soil Biology. 47:392-399.
Prager K, Helming K, Hagedorn K.  2011.  The challenge of developing effective soil conservation policies (editorial). Land Degradation and Development, Special Issue, The Challenge of Effective Soil Conservation Policies. 22:1-4.
Midwood AJ, Millard P.  2011.  Challenges in measuring the d13C of the soil surface CO2 efflux. Rapid Communications in Mass Spectrometry. 25:232-242.
Jeong GY, Hillier S, Kemp RA.  2011.  Changes in mineralogy of loess-paleosol sections across the Chinese Loess Plateau. Quaternary Research. 75:245-255.
Pakeman RJ, Huband S, Kriel A, Lewis R.  2011.  Changes in the management of Scottish machair communities and associated habitats from the 1970s to the present. Scottish Geographical Journal. 127:267-287.
Pozsgai G, Littlewood NA.  2011.  Changes in the phenology of the ground beetle Pterostichus madidus (Fabricius, 1775). Insect Science. 18:462-472.
Addy S, Soulsby C, Hartley AJ, Tetzlaff D.  2011.  Characterisation of channel reach morphology and associated controls in deglaciated montane catchments in the Cairngorms, Scotland. Geomorphology. 132:176-186.
Irbe I, Andersone I, Andersons B, Noldt G, Dizhbite T, Kurnosova N, Nuopponen M, Stewart D.  2011.  Characterisation of the initial degradation stage of Scots pine (Pinus sylvestris L.) sapwood after attack by brown-rot fungus Coniophora puteana. Biodegradation. 22:719-728.
Dawson IK, Vinceti B, Weber JC, Neufeldt H, Russell JR, Lengkeek AG, Kalinganire A, Kindt R, Lilles JPB, Roshetko J et al..  2011.  Climate change and tree genetic resource management: maintaining and enhancing the productivity and value of smallholder tropical agroforestry landscapes (Review). Agroforestry Systems. 81:67-78.
Brown I, Poggio L, Gimona A, Castellazzi MS.  2011.  Climate change, drought risk and land capability for agriculture: implications for land-use in Scotland. Regional Environmental Change. 11:503-518.
Chakraborty SK, Newton AC.  2011.  Climate change, plant diseases and food security: an overview. Plant Pathology. 60:2-14.
Raven JA.  2011.  Climate: baselines for the biological effects of environmental change. Current Biology. 21:R190-R192.
Kikvidze Z, Michalet R, Brooker RW, Cavieres LA, Lortie CJ, Pugnaire FI, Callaway RM.  2011.  Climatic drivers of plant-plant interactions and diversity in alpine communities. Alpine Botany. 121:63-70.
Limpens J, Granath G, Gunnarsson U, Aerts R, Bayley S, Bragazza L, Bubier J, Buttler A, van den Berg LJL, Francez AJ et al..  2011.  Climatic modifiers of the response to nitrogen deposition in peat-forming Sphagnum mosses: a meta-analysis. New Phytologist. 191:496-507.
Gilroy EM, Taylor RM, Hein I, Boevink P, Sadanandom A, Birch PRJ.  2011.  CMPG1-dependent cell death follows perception of diverse pathogen elicitors at the host plasma membrane and is suppressed by Phytophthora infestans RXLR effector AVR3a. New Phytologist. 190:653-666.
Blackstock KL, Dinnie E, Trench H, Miles G.  2011.  Co-researching the Cairngorms: supporting the aims of, not just researching in, the Cairngorms National Park. Scottish Geographical Journal.. 127:40-60.
Chen XW, Hedley PE, Morris J, Liu H, Niks RE, Waugh R.  2011.  Combining genetical genomics and bulked segregant analysis-based differential expression: an approach to gene localization. Theoretical and Applied Genetics. 122:1375-1383.
Fisher M, Downie H, Welten MCM, Delgado I, Bain AA, Planzer T, Sherman A, Sang H, Tickle C.  2011.  Comparative analysis of 3D expression patterns of transcription factor genes and digit fate maps in the developing chick wing. PLoS ONE. 6:e18661.
Bayer MM, Milne I, Stephen G, Shaw P, Cardle L, Wright F, Marshall DF.  2011.  Comparative visualization of genetic and physical maps with Strudel. Bioinformatics. 27:1307-1308.
Cullen DW, Harwood WA, Smedley M, Davies HV, Taylor MA.  2011.  Comparison of DNA walking methods for isolation of transgene flanking regions in GM potato. Molecular Biotechnology. 49:19-31.
Dick J, Andrews C, Beaumont DA, Benham S, Brooks DR, Corbett S, Lloyd D, McMillan S, Monteith DT, Pilgrim ES et al..  2011.  A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
Vinten AJA, Artz RRE, Thomas N, Potts JM, Avery LM, Langan SJ, Watson H, Cook Y, Taylor C, Abel C et al..  2011.  Comparison of microbial community assays for the assessment of stream biofilm ecology. Journal of Microbiological Methods. 85:190-198.

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.