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Giuliano G, Tavazza R, Diretto G, Beyer P, Taylor MA.  2008.  Metabolic engineering of carotenoid biosynthesis in plants. Trends in Biotechnology. 26:139-145. Abstract
Ducreux LJM, Morris WL, Hedley PE, Shepherd T, Davies HV, Millam S, Taylor MA.  2005.  Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein. Journal of Experimental Botany. 56:81-89. Abstract
Cubitt MF, Hedley PE, Williamson NR, Morris JA, Campbell E, Toth IK, Salmond GPC.  2013.  A metabolic regulator modulates virulence and quorum sensing signal production in Pectobacterium atrosepticum. Molecular Plant Microbe Interactions. 26:356-366.
Driver T, Bajhaiya AK, Allwood JW, Goodacre R, Pittman JK, Dean AP.  2015.  Metabolic responses of eukaryotic microalgae to environmental stress limit the ability of FT-IR spectroscopy for species identification. Algal Research- Biomass Biofuels and Bioproducts. 11:148-155.
Lapierre H, Vazquez-Anon M, Parker D, Dubreuil P, Holtrop G, Lobley GE.  2011.  Metabolism of 2-hydroxy-4-(methylthio)butanoate (HMTBA) in lactating dairy cows. Journal of Dairy Science. 94:1526-1535.
Frank T, Rohlig RM, Davies HV, Barros E, Engel K.  2012.  Metabolite profiling of maize kernels - genetic modification versus environmental influence. Journal of Agricultural and Food Chemistry. 60:3005-3012.
Davies HV, Shepherd LVT, Stewart D, Frank T, R R, Engel K-H.  2010.  Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.
Shepherd LVT, Alexander CA, Sungurtas J, McNicol JW, Stewart D, Davies HV.  2010.  Metabolomic analysis of the potato tuber life cycle. Metabolomics. 6:274-291.
Stewart D, McDougall GJ, Sungurtas J, Verrall SR, Graham J, Martinussen I.  2007.  Metabolomic approach to identifying bioactive compounds in berries: Advances toward fruit nutritional enhancement. Molecular Nutrition and Food Research. 51:645-651. Abstract
Renberg L, Johansson AI, Shutova T, Stenlund H, Aksmann A, Raven JA, Gardestrom P, Moritz T, Samuelsson G.  2010.  A metabolomic approach to study major metabolite changes during acclimation to limiting CO2 in Chlamydomonas reinhardtii. Plant Physiology. 154:187-196.
Beleggia R, Platani C, Papa R, Di Chio A, Barros E, Mashaba C, Wirth J, Fammartino A, Sautter C, Conner S et al..  2011.  Metabolomics and food processing: from semolina to pasta. Journal of Agricultural and Food Chemistry. 59:9366-9377.
Rubio-Aliaga I, de Roos B, Duthie SJ, Crosley LK, Mayer C, Horgan GW, Colquhoun IJ, Le Gall G, Huber F, Kremer W et al..  2011.  Metabolomics of prolonged fasting in humans reveals new catabolic markers. Metabolomics. 7:375-387.
Dobson G, Shepherd T, Verrall SR, Griffiths DW, Ramsay G, McNicol JW, Davies HV, Stewart D.  2010.  A metabolomics study of cultivated potato (Solanum tuberosum) groups, Andigena, Phureja, Stenotomum and Tuberosum using gas chromatography-mass spectrometry. Journal of Agricultural and Food Chemistry. 58:1214-1223.
Foito A, Stewart D.  2018.  Metabolomics: A high-throughput screen for biochemical and bioactivity diversity in plants and crops. Current Pharmaceutical Design. 24:2043-2054.
Shepherd LVT, Fraser PD, Stewart D.  2011.  Metabolomics: a second-generation platform for crop and food analysis. Bioanalysis. 3:1143-1159.
Joynson R, Pritchard L, Osemwekha E, Ferry N.  2017.  Metagenomic analysis of the gut microbiome of the common black slug arion ater in search of novel lignocellulose degrading enzymes. Frontiers in Microbiology. 9:ArticleNo.2181.
Mayor DJ, Gray NB, Elver-Evans J, Midwood AJ, Thornton B.  2013.  Metal-macrofauna interactions determine microbial community structure and function in copper contaminated sediments. PLoS ONE. 8:e64940.
Bryce R, van der Wal R, Mitchell R, Lambin X.  2013.  Metapopulation dynamics of a burrowing herbivore drive spatio-temporal dynamics of riparian plant communities. Ecosystems. 16:1165-1177.
Cameron A, Logie L, Patel K, Erhardt S, Bacon S, Middleton P, Harthill J, Forteath C, Coats JT, Kerr C et al..  2018.  Metformin selectively targets redox control of complex I energy transduction. Redox Biology. 14:187-197.
Cameron A, Logie L, Patel K, Erhardt S, Bacon S, Middleton P, Harthill J, Forteath C, Coats JT, Kerr C et al..  2018.  Metformin selectively targets redox control of complex I energy transduction. Redox Biology. 14:187-197.
Ricci P, Rooke JA, Nevison I, Waterhouse A.  2013.  Methane emissions from beef and dairy cattle: quantifying the effect of physiological stage and diet characteristics. Journal of Animal Science. 91:5379-5389.
Tate KR, Ross DJ, Saggar S, Hedley CB, Dando J, Singh BK, Lamb SJ.  2007.  Methane uptake in soils from Pinus radiata plantations, a reverting shrubland and adjacent pastures: effects of land-use change, and soil texture, water and mineral nitrogen. Soil Biology and Biochemistry. 39(7):1437-1449.
Williams D, Britten A, McCallum S, Jones H, Aitkenhead M, Karley A, Loades K, Prashar A, Graham J.  2017.  A method for automatic segmentation and splitting of hyperspectral images of raspberry plants collected in field conditions. Plant Methods. 13:ArticleNo.74.
Whisson SC, Avrova AO, van West P, Jones JT.  2005.  A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans. Molecular Plant Pathology. 6:153-163. Abstract
Hollaway MJ, Beven KJ, Benskin CMH, Collins AL, Evans R, Falloon PD, Forber KJ, Hiscock KM, Kahana R, Macleod CJA et al..  2018.  A method for uncertainty constraint of catchment discharge and phosphorus load estimates. Hydrological Processes. 32:2779-2787.
Belzunce-Segarra MJ, Prego R, Wilson MJ, Bacon J, Santos-Echeand J.  2008.  Method speciation in surface sediments of the Vigo Ria (NW Iberian Peninsula). Scientia Marina. 72:119-126.
Cuttle SP, Newell-Price JP, Harris D, Chadwick DR, Shepherd MA, Anthony SGA, Macleod CJA, Haygarth PM, Chambers BJ.  2016.  A method-centric 'User Manual' for the mitigation of diffuse water pollution from agriculture. Soil Use and Management. 32:162-171.
Conniff A, Craig T.  2016.  A methodological approach to understanding the wellbeing and restorative benefits associated with greenspace. Urban Forestry and Urban Greening. 19:103-109.
Greenfield LM, Hill PW, Paterson E, Baggs EM, Jones DL.  2018.  Methodological bias associated with soluble protein recovery from soil. Scientific Reports. 8:ArticleNo.11186.
Ronfort C, Souchere V, Martin P, Sebillotte C, Castellazzi MS, Barbottin A, Meynard JM, Laignel B.  2011.  Methodology for land use change scenario assessment for runoff impacts: A case study in a north-western European Loess belt region (Pays de Caux, France). Catena. 86:36-48.
Jiang N, Leach LJ, Hu X, Potokina E, Jia T, Druka A, Waugh R, Kearsey MJ, Luo ZW.  2008.  Methods for evaluating gene expression from Affymetrix microarray datasets. BMC Bioinformatics. 9:-284. Abstract
Buccianti A, Nisi B, Martin-Fernandez JA, Palarea-Albaladejo J.  2014.  Methods to investigate the geochemistry of groundwaters with values for nitrogen compounds below the detection limit. Journal of Geochemical Exploration. 141:78-88.
Sanchez SE, Petrillo E, Beckwith EJ, Zhang X, Rugnone ML, Hernando CE, Cuevas JC, Godoy Herz MA, Depetris-Chauvin A, Simpson CG et al..  2010.  A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
Rowe EC, Jones L, Dise NB, Evans CD, Mills G, Hall J, Stevens CJ, Mitchell RJ, Field C, Caporn SJ et al..  2017.  Metrics for evaluating the ecological benefits of decreased nitrogen deposition. Biological Conservation. 212:454-463.
Buddendorf WB, Malcolm IA, Geris J, Wilkinson M, Soulsby C.  2017.  Metrics to assess how longitudinal channel network connectivity and in-stream Atlantic salmon habitats are impacted by hydropower regulation. Hydrological Processes. 31:2132-2142.
van der Heijden GA, Legout A, Midwood AJ, Craig CA, Pollier B, Ranger J, Dambrine E.  2013.  Mg and Ca root uptake and vertical transfer in soils assessed by an in situ ecosystem scale multi-isotopic (26Mg & 44Ca) tracing experiment in a beech stand (Breuil-Chenue, France). Plant and Soil. 369:33-45.
Mantelin S, Bhattarai KK, Jhavei TZ, Kaloshian I.  2013.  Mi-1-mediated resistance to Meloidogyne incognita in tomato may not rely on ethylene but hormone perception through ETR3 participates in limiting nematode infection in a susceptible host. PLoS ONE. 8:e63281.
Adediran GA, Lundberg D, Almkvist G, Pradas del Real AE, Klysubun W, Hillier S, Gustafsson JP, Simonsson M.  2021.  Micro and nano sized particles in leachates from agricultural soils: phosphorus and sulfur speciation by x-ray micro-spectroscopy. Water Research. 189:ArticleNo.116585.
Fenton B, Margaritopoulos JT, Malloch GL, Foster SP.  2010.  Micro-evolutionary change in relation to insecticide resistance in the peach-potato aphid, Myzus persicae. Ecological Entomology. 35:131-146.
Sommerkorn M.  2008.  Micro-topographic patterns unravel controls of soil water and temperature on soil respiration in three Siberian tundra systems. Soil Biology and Biochemistry.. 40(7):1792-1802.
Pritchard L, Liu H, Booth C, Douglas E, Fran P, Schrenzel J, Hedley PE, Birch PRJ, Toth IK.  2009.  Microarray comparative genomic hybridisation analysis incorporating genomic organisation, and application to enterobacterial plant pathogens. PLoS Computational Biology. 5:-e1000473.
Van der Linden I, Cottyn B, Uyttendaele M, Vlaemynck G, Heyndrickx M, Maes M, Holden N.  2016.  Microarray-based screening of differentially expressed genes of e. coli O157:H7 sakai during preharvest survival on butterhead lettuce. Agriculture-Basel. 6
Chen X, Daniell TJ, Neilson R, O'Flaherty V, Griffiths BS.  2014.  Microbial and microfaunal communities in phosphorus limited, grazed grassland change composition but maintain homeostatic nutrient stoichiometry. Soil Biology and Biochemistry. 75:94-101.
Chen X, Daniell TJ, Neilson R, O'Flaherty V, Griffiths BS.  2015.  Microbial and microfaunal communities in phosphorus limited, grazed grassland change composition but maintain homeostatic nutrient stoichiometry (vol 75, pg 94, 2014). Soil Biology and Biochemistry.
Griffiths BS, Caul S, Thompson J, Birch ANE, Cortet J, Andersen MN, Krogh PH.  2007.  Microbial and microfaunal community structure in cropping systems with genetically modified plants. Pedobiologia. 51:195-206. Abstract
Roberts WM, Matthews RA, Blackwell MSA, Peukert S, Collins AL, Stutter MI, Haygarth PM.  2013.  Microbial biomass phosphorus contributions to phosphorus solubility in riparian vegetated buffer strip soils. Biology and Fertility of Soils. 49:1237-1241.
Hopkins DW, Waite IS, O'Donnell AG.  2011.  Microbial biomass, organic matter mineralization and nitrogen in soils from long-term experimental grassland plots (Palace Leas meadow hay plots, UK). European Journal of Soil Science. 62:95-104.
Andersen R, Chapman SJ, Artz RRE.  2013.  Microbial communities in natural and disturbed peatlands: a review. Soil Biology and Biochemistry. 57:979-994.
Garcia-Pausas J, Paterson E.  2011.  Microbial community abundance and structure are determinants of soil organic matter mineralisation in the presence of labile carbon. Soil Biology and Biochemistry. 43:1705-1715.
H C, English LC, Halpin C, Andreux F, Hopkins DW.  2006.  Microbial community structure in soils with decomposing residues from plants with genetic modifications to lignin biosynthesis. FEMS Microbiology Letters. 263:68-75. Abstract
Singh BK, Walker A.  2006.  Microbial degradation of organophosphorus compounds. FEMS Microbiology Review. 30(3):428-471.
Karpouzas DG, Singh BK.  2006.  Microbial degradation of organophosphorus xenobiotics: metabolic pathways and molecular basis. Advances in Microbial Physiology. 51:119-185.
Delgado-Baquerizo M, Maestre FT, Reich PB, Jeffries TC, Gaitán JJ, Encinar D, Berdugo M, Campbell CD, Singh BK.  2016.  Microbial diversity drives multifunctionality in terrestrial ecosystems. Nature Communications. 7
Macdonald LM, Singh BK, Thomas N, Brewer M, Campbell CD, Dawson LA.  2008.  Microbial DNA profiling by multiplex terminal restriction fragment length polymorphism for forensic examination of soil evidence and the influence of sample condition. Journal Applied Microbiology. 105(3):813-821.
Zhou SY, Li H, Giles ME, Neilson R, Yang XR, Su JQ.  2021.  Microbial flow within an air-phyllosphere-soil continuum. Frontiers in Microbiology. qq:ArticleNo.615481.
Yuangen Y, Campbell CD, Clark L, Cameron CM, Paterson E.  2006.  Microbial indicators of heavy metal contamination in urban and rural soils. Chemosphere. 63(11):1942-1952.
Fan F, Yu B, Wang B, George TS, Yin H, Xu D, Li D, Song A.  2019.  Microbial mechanisms of the contrast residue decomposition and priming effect in soils with different organic and chemical fertilization histories. Soil Biology and Biochemistry. 135:213-221.
Vinten AJA, Potts JM, Avery L, Strachan NJC.  2009.  Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3:744-752.
Vinten AJA, Avery LM, Potts JM, Strachan N.  2009.  Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal. 3(5):744-752.
Sun B, Roberts DM, Dennis PG, Caul S, Daniell TJ, Hallett PD, Hopkins DW.  2014.  Microbial properties and nitrogen contents of arable soils under different tillage regimes. Soil Use and Management. 30:152-159.
Gontikaki E, Polymenakou PN, Thornton B, Narayanaswamy BE, Black K, Tselepides A, Witte U.  2012.  Microbial response to organic matter enrichment in the oligotrophic Levantine Basin (Eastern Mediterranean). Geomicrobiology Journal. 29:648-655.
Dennis PG, Sparrow AD, Gregorich EG, Novis P, Elberling B, Greenfield LG, Hopkins DW.  2013.  Microbial responses to carbon and nitrogen supplementation in an Antarctic dry valley soil. Soil Biology and Biochemistry. 25:55-61.
Dungait JAJ, Ghee C, Rowan JS, McKenzie BM, Hawes C, Dixon ER, Paterson E, Hopkins DW.  2013.  Microbial responses to the erosional redistribution of soil organic carbon in arable fields. Soil Biology and Biochemistry. 60:195-201.
Gomez-Consarnau L, Raven JA, Levine NM, Cutter LS, Wang DL, Seegers B, Aristegui J, Fuhrman JA, Gasol JM, Sanudo-Wilhelmy SA.  2019.  Microbial rhodopsins are major contributors to the solar energy captured in the sea. Science Advances. 5:ArticleNo.eaaw8855.
Demaneche S, Schauser L, Dawson LA, Franqueville L, Simonet P.  2017.  Microbial soil community analyses for forensic science: application to a blind test. Forensic Science International. 270:153-158.
Pan FX, Li YY, Chapman SJ, Khan S, Yao HY.  2016.  Microbial utilization of rice straw and its derived biochar in a paddy soil. Science of the Total Environment.
Dupuy LX, Mimault M, Patko D, Ladmiral V, Ameduri B, MacDonald MP, Ptashnyk M.  2018.  Micromechanics of root development in soil. Current Opinion in Genetics and Development. 51:18-25.
Singh BK, Bardgett R, Smith P, Reay D.  2010.  Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nature Reviews Microbiology. 8(11):779-790.
Kettle H, Holtrop G, Louis P, Flint HJ.  2018.  microPop: Modelling microbial populations and communities in R. Methods in Ecology and Evolution. 9:399-409.
Malloch G, Highet F, Kasprowicz L, Pickup J, Neilson R, Fenton B.  2006.  Microsatellite marker analysis of peach-potato aphids (Myzus persicae, Homoptera: Aphididae) from Scottish suction traps. Bulletin of Entomological Research. 96:573-582. Abstract
Castillo NRF, Reed BM, Graham J, Fern F, Bassil NV.  2010.  Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.
Verma A, van der Wal R, Fischer A.  2015.  Microscope and spectacle: On the complexities of using new visual technologies to communicate about wildlife conservation. Ambio. 44:S648-S660.
Shaw RF, Pakeman RJ, Young MR, Iason GR.  2013.  Microsite affects willow sapling recovery from bank vole (Myodes glareolus) herbivory, but does not affect grazing risk. Annals of Botany. 112:731-739.
Smith SW, Robertson AHJ, Meharg AA, Pakeman RJ, Johnson D, Woodin SJ, van der Wal R.  2013.  Milling plant and soil material in plastic tubes over-estimates carbon and under-estimates nitrogen concentrations. Plant and Soil. 369:509-513.
Bohn T, McDougall GJ, Alegria A, Alminger M, Arrigoni E, Aura AM, Brito C, Cilla A, El SN, Karakaya S et al..  2015.  Mind the gap-deficits in our knowledge of aspects impacting the bioavailability of phytochemicals and their metabolites - a position paper focusing on carotenoids and polyphenols. Molecular Nutrition and Food Research. 59:1307-1323.
Pariser EC, Gilbert L, Hazon N, Arnold KE, Graves JA.  2012.  Mind the gap: the ration of yolk androgens and antioxidants varies between sons and daughters dependent on paternal attractiveness. Behavioral Ecology and Sociobiology. 66:519-527.
Zheng F, Zhu D, Giles ME, Daniell T, Neilson R, Zhu YG, Yang XR.  2019.  Mineral and organic fertilization alters the microbiome of a soil nematode Dorylaimus stagnalis and its resistome. Science of the Total Environment. 680:70-78.
Pongrac P, McNicol JW, Lilly A, Thompson JA, Wright G, Hillier S, White PJ.  2018.  Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. Published online..
Pongrac P, McNicol JW, Lilly A, Thompson JA, Wright G, Hillier S, White PJ.  2019.  Mineral element composition of cabbage as affected by soil type and phosphorus and zinc fertilisation. Plant and Soil. 434:151-165.
Butler BM.  2020.  Mineral sources of aqua regia extractable base cations in Scottish soils interpreted from Cubist models trained with quantitative mineralogy data. Chemical Geology. 551:ArticleNo.119773.
Certini G, Wilson MJ, Hillier S, Fraser AR, Delbos E.  2006.  Mineral weathering in trachydacitic-derived soils and saprolites involving formation of embryonic halloysite and gibbsite at Monte Amiata, Central Italy. Geoderma. 133(3-4):173-190.
Butler BM, Palarea-Albaladejo J, Shepherd KD, Nyambura KM, Towett EK, Sila AM, Hillier S.  2020.  Mineral-nutrient relationships in African soils assessed using cluster analysis of X-ray powder diffraction patterns and compositional methods. Geoderma. 375:Article114474.
Stutter MI, Cairns J.  2016.  The mineralisation of dissolved organic matter recovered from temperate waterbodies during summer. Aquatic Sciences. 78:447-482.
Marwa EMM, Hillier S, Rice CM, Meharg AA.  2009.  Mineralogical and chemical characterization of some vermiculites from the Mozambique Belt of Tanzania for agricultural use. Clay Minerals. 44(1):1-17.
Andrist-Rangel Y, Simonsson M, Andersson S, Oborn I, Hillier S.  2006.  Mineralogical budgeting of potassium in soil: a basis for understanding standard measures of reserve potassium. Journal of Plant Nutrition and Soil Science. 169:605-615.
Wilson MJ, Hurst A, Wilkins AD, Wilson L, Bowen L.  2019.  Mineralogical evidence for multiple dust sources in an early Triassic loessite. Sedimentology..
Simonsson M, Court M, Bergholm J, Lemarchand D, Hillier S.  2016.  Mineralogy and biogeochemistry of potassium in the Skogaby experimental forest, southwest Sweden: pools, fluxes and K/Rb ratios in soil and biomass. Biogeochemistry. Published online..
Iavazzo P, Adamo P, Boni M, Hillier S, Zampella M.  2012.  Mineralogy and chemical forms of lead and zinc in abandoned mine wastes and soils: an example from Morocco. Journal of Geochemical Exploration. 113:56-67.
Shaldybin MV, Lopushnyak YM, Goncharov IV, Wilson MJ, Wilson L, Mendis BG.  2017.  The mineralogy of the clayey-silty siliceous rocks in the Bazhenov Shale Formation (upper Jurassic) in the west Siberian basin, Russia: the role of diagenesis and possible implications for their exploitation as an unconventional hydrocarbon reservoi. Applied Clay Science. 136:75-89.
Kaufmann K, Chapman SJ, Campbell CD, Harms H, Hohener P.  2006.  Miniaturized test system for soil respiration induced by volatile pollutants. Environmental Pollution. 140(2):269-278.
Snell HSK, Robinson D, Midwood AJ.  2014.  Minimising methodological biases to improve the accuracy of partitioning soil respiration using natural abundance 13C. Rapid Communications in Mass Spectrometry. 28:2341-2351.
Tilsner J, Oparka KJ.  2012.  Missing links? The connection between replication and movement of plant RNA viruses Current Opinion in Virology. 2:705-711.
Flynn KJ, Stoecker DK, Mitra A, Raven JA, Glibert PM, Hansen PJ, Graneli E, Burkholder JM.  2013.  Misuse of the phytoplanktonzooplankton dichotomy: the need to assign organisms as mixotrophs within plankton functional types. Journal of Plankton Research. 35:3-11.
Chamen WCT, Moxey AP, Towers W, Balana BB, Hallett PD.  2015.  Mitigating arable soil compaction: A review and analysis of available cost and benefit data. Soil and Tillage Research. 146:10-25.
Collins AL, Stutter MI, Kronvang B.  2014.  Mitigating diffuse pollution from agriculture: International approaches and experience. Science of the Total Environment. 468-469:1173-1177.
Thompson CW, Aspinall P, Roe J, Robertson L, Miller DR.  2016.  Mitigating stress and supporting health in deprived urban communities: the importance of green space and the social environment. International Journal of Environmental Research and Public Health. 13:ArticleNo.440.
Pasternak Z, Luchibia AO, Matan O, Dawson LA, Gafny R, Shpitzen M, Avraham S, Jurkevitch E.  2018.  Mitigating temporal mismatches in forensic soil microbial profiles. Australian Journal of Forensic Sciences. Published online..
Pasternak Z, Luchibia AO, Matan O, Dawson LA, Gafny R, Shpitzen M, Avraham S, Jurkevitch E.  2019.  Mitigating temporal mismatches in forensic soil microbial profiles. Australian Journal of Forensic Sciences. 51:685-694.
Palomares-Rius JE, Cantalapiedra-Navarette C, Archidona-Yuste A, Blok VC, Castillo P.  2017.  Mitochondrial genome diversity in dagger and needle nematodes (Nematode: Longidoridae). Scientific Reports. 7
Phillips WS, Brown AMV, Howe DK, Peetz AB, Blok VC, Denver DR, Zasada IA.  2016.  The mitochondrial genome of Globodera ellingtonae is composed of two circles with segregated gene content and differential copy numbers. BMC Genomics. 17:ArticleNo.706..
He Y, Jones JT, Armstrong MR, Lamberti F, Moens M.  2005.  The mitochondrial genome of Xiphinema americanum sensu stricto (Nematoda: Enoplea):considerable economization in the length and structural features of encoded genes. Journal of Molecular Evolution. 61:819-833. Abstract
Palomares-Rius JE, Cantalapiedra-Navarette C, Archidona-Yuste A, Blok VC, Castillo P.  2017.  Mitochondrial genomes diversity in dagger and needle nematodes (Nematode: Longidoridae). Scientific Reports. 7
Gibson T, Blok VC, Phillips MS, Hong G, Kumarasinghe D, Riley IT, Dowton M.  2007.  The mitochondrial subgenomes of the nematode Globodera pallida are mosaics: Evidence of recombination in an animal mitochondrial genome. Journal of Molecular Evolution. 64:463-471. Abstract
Comadran J, Russell JR, Booth A, Pswarayi A, Ceccarelli S, Grando S, Stanca AM, Pecchioni N, Akar T, Al-Yassin A et al..  2011.  Mixed model association scans of multi-environmental trial data reveal major loci controlling yield and yield related traits in Hordeum vulgare in Mediterranean environments. Theoretical and Applied Genetics. 122:1363-1373.
Schmidt S, Raven JA, Paungfoo-Lonhienne C.  2013.  The mixotrophic nature of photosynthetic plants. Functional Plant Biology. 40:425-438.
Swanston JS, Newton AC.  2005.  Mixtures of UK wheat as an efficient and environmentally friendly source for bioethanol. Journal of Industrial Ecology. 9:109-126. Abstract
Zagata L, Sutherland LA, Hrabak J, Lostak M.  2020.  Mobilising the past: Towards a conceptualisation of retro-innovation. Sociologia Ruralis. 60:639-660.
Mollon LC, Norton GJ, Trakal L, Moreno-Jimenez E, Elouali FZ, Hough RL, Beesley L.  2016.  Mobility and toxicity of heavy metal(loid)s arising from contaminated wood ash application to a pasture grassland soil. Environmental Pollution. 218:419-427.
Mitchell K, Trakal L, Sillerova H, Avelar-Gonzalez FJ, Guerrero-Barrera AL, Hough RL, Beesley L.  2018.  Mobility of As, Cr and Cu in a contaminated grassland soil in response to diverse organic amendments; a sequential column leaching experiment. Applied Geochemistry. 88:95-102.
Giles CD, Isles PDF, Manley T, Xu YY, Druschel GK, Schroth AW.  2016.  The mobility of phosphorus, iron, and manganese through the sediment-water continuum of a shallow eutrophic freshwater lake under stratified and mixed water-column conditions. Biogeochemistry. 127:15-34.
Vanga BR, Ramakrishnan P, Butler RC, Toth IK, Ronson CW, Jacobs JME, Pitman AR.  2015.  Mobilization of horizontally acquired island 2 is induced in planta in the phytopathogen Pectobacterium atrosepticumSCRI1043 and involves the putative relaxase ECA0613 and quorum sensing. Environmental Microbiology. 17:4730-4744.
Butler A, Doherty RM, Marion G.  2009.  Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
Lees KJ, Quaife T, Artz RRE, Khomik M, Sottocornola M, Kiely G, Hambley G, Hill T, Saunders M, Cowie NR et al..  2019.  A model of gross primary productivity based on satellite data suggests formerly afforested peatlands undergoing restoration regain full photosynthesis capacity after five to ten years. Journal of Environmental Management. 246:594-604.
Elia M, Swanston JS, Moralejo MA, Casas AM, P AM, Ciudad FJ, Thomas WTB, Smith PL, Ullrich SE, Molina-Cano J-L.  2010.  A model of the genetic differences in malting quality between European and North American barley cultivars based on a QTL study of the cross Triumph x Morex. Plant Breeding. 129:280-290.
Porter R, Norman RA, Gilbert L.  2013.  A model to test how ticks and louping ill virus can be controlled by treating red grouse with acaricide. Medical and Veterinary Entomology. 27:237-246.
Manh Khai N, Oborn I, Hillier SJ, Gustafsson JP.  2008.  Modeling of metal binding in tropical Fluvisols and Acrisols treated with biosolids and wastewater. Chemosphere. 70(8):1338-1346.
Cui S, Fu Q, Tian CG, Zhang ZL, Hough RL, Shen ZX, Ma JM, Li YF.  2019.  Modeling primary and secondary fractionation effects and atmospheric transport of polychlorinated biphenyls through single-source emissions. Environmental Geochemistry and Health. 41:1939-1951.
Brouwer R, Martin-Ortega J.  2012.  Modeling self-censoring of polluter pays protest votes in stated preference research to support resource damage estimations in environmental liability. Resource and Energy Economics. 34:151-166.
Tarfasa S, Balana BB, Tefera T, Woldeamanuel T, Moges A, Dinato M, Black HIJ.  2018.  Modeling smallholder farmers' preferences for soil management measures : A case study from South Ethiopia. Ecological Economics. 145:410-419.
Vereecken H, Schnepf A, Hopmans JW, Javaux M, Or D, Roose DOT, Vanderborght J, Young MH, Amelung W, Aitkenhead M et al..  2016.  Modeling soil processes: Review, key challenges, and new perspectives. Vadose Zone Journal. 15
Glendell M, Palarea-Albaladejo J, Pohle I, Marrero S, McCreadie B, Cameron G, Stutter MI.  2019.  Modeling the ecological impact of phosphorus in catchments with multiple environmental stressors. Journal of Environmental Quality. 48:1336-1346.
Kragt ME, Robson BJ, Macleod CJA.  2013.  Modellers' roles in structuring integrative research projects. Environmental Modelling and Software. 39:322-330.
Caron-Lormier G, Bohan DA, Dye R, Hawes C, Humphry RW, Raybould A.  2011.  Modelling an ecosystem: the example of agro-ecosystems. Ecological Modelling. 222:1163-1173.
Xiong W, Matthews R, Holman I, Lin E, Xu Y.  2007.  Modelling China's potential maize production at regional scale under climate change. Climatic Change. 85(3-4):433-451.
Preedy K, Schofield PG, Liu S, Matzavinos A, Chaplain MAJ, Hubbard SF.  2010.  Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.
Spezia L.  2019.  Modelling covariance matrices by the trigonometric separation strategy with application to hidden Markov models. Test. 28:399-422.
Aitkenhead MJ, Aitkenhead-Peterson JA, McDowell W, Smart RP, Cresser M.  2007.  Modelling doc export from catchments in Scotland using neural networks. Computers and Geosciences. 33:423-436.
Müller B, Hoffmann F, Heckelei T, Müller C, Hertel TW, Polhill JG, van Wilk M, Achterbosch T, Alexander P, Brown C et al..  2020.  Modelling food security: Bridging the gap between the micro and the macro scale. Global Environmental Change. 63:ArticleNo.102085.
Begum K, Kuhnert M, Yeluripati JB, Ogle SM, Parton WJ, Williams SA, Pan G, Cheng K, Ali MA, Smith P.  2019.  Modelling greenhouse gas emissions and mitigation potentials in fertilized paddy rice fields in Bangladesh. Geoderma. 341:206-215.
Elledge AE, McAlpine CA, Murray PJ, Gordon IJ.  2013.  Modelling habitat preferences of feral pigs for rooting in lowland rainforest. Biological Invasions. 15:1523-1535.
Poggio L, Gimona A.  2013.  Modelling high resolution RS data with the aid of coarse resolution data and ancillary data. International Journal of Applied Earth Observations and Geoinformation. 23:360-371.
Aalders IH.  2008.  Modelling land use decision behavior with Bayesian belief networks. Ecology and Society. 13(1):16.
McLellan CR, Worton BJ, Deasy W, Birch ANE.  2015.  Modelling larval movement data from individual bioassays. Biometrical Journal. 57:485-501.
Futter MN, Starr FMM, Holmberg M.  2008.  Modelling long-term patterns of dissolved organic carbon concentration in the surface waters of a boreal catchment. Hydrology and Earth System Sciences. 12(2):437-447.
Senapati N, Chabbi A, Giostri AF, Yeluripati JB, Smith P.  2016.  Modelling nitrous oxide emissions from mown-grass and grain-cropping systems: Testing and sensitivity analysis of DailyDayCent using high frequency measurements. Science of the Total Environment. 572:955-977.
Grzegorczyk M, Husmeier D, Rahnenfuhrer J.  2011.  Modelling non-stationary dynamic gene regulatory processes with the BGM model. Computational Statistics. 26:199-218.
Grzegorczyk M, Husmeier D, Edwards KD, Ghazal P, Millar AJ.  2008.  Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler. Bioinformatics. 24:2071-2078. Abstract
Grzegorczyk M, Husmeier D, Rahnenf J.  2010.  Modelling nonstationary gene regulatory processes. Advances in Bioinformatics. :-749848.
Simpson SJ, Raubenheimer D, Charleston MA, Clissold FJ, Couzin ID, Kendall D, Clements KD, Ross A, Coleman RA, Dussutour A et al..  2009.  Modelling nutritional interactions: from individuals to communities. Trends in Ecology and Evolution.. 25(1):53-60.
Fox NJ, Marion G, Davidson RS, White PCL, Hutchings MR.  2013.  Modelling parasite transmission in a grazing system: the importance of host behaviour and immunity. PLoS ONE. 8:e77996.
Bohan DA, Powers SJ, Champion G, Haughton AJ, Hawes C, Squire GR, Cussans J, Mertens SK.  2011.  Modelling rotations: can crop sequences explain arable weed seedbank abundance? Weed Research. 51:422-432.
Melo PC, Copus A, Coombes M.  2016.  Modelling small area at-risk-of-poverty rates for the UK using the World Bank methodology and the EU-SILC. Applied Spatial Analysis and Policy. 9:97-117.
Senapati N, Hulugalle NR, Smith P, Wilson BR, Yeluripati JB, Daniel H, Ghosh S, Lockwood P.  2014.  Modelling soil organic carbon storage with RothC in irrigated Vertisols under cotton cropping systems in the sub-tropics. Soil and Tillage Research. 143:38-49.
Spezia L, Cooksley SL, Brewer MJ, Donnelly D, Tree A.  2014.  Modelling species abundance in a river by Negative Binomial hidden Markov models. Computational Statistics and Data Analysis. 71:599-614.
Citores L, Ibaibarriaga L, Lee DJ, Brewer MJ, Santos M, Chust G.  2020.  Modelling species presence-absence in the ecological niche theory framework using shape-constrained generalized additive models. Ecological Modelling. 418:ArticleNo.108926.
Brooker RW, Travis JMJ, Clark EJ, Dytham C.  2007.  Modelling species' range shifts in a changing climate: The impacts of biotic interactions, dispersal distance and the rate of climate change. Journal of Theoretical Biology. 245(1):59-65.
Futter MN, Skeffington RA, Whitehead PG, Moldan F.  2009.  Modelling stream and soil water nitrate dynamics during experimentally increased nitrogen deposition in a coniferous forest catchment at Gardsjon, Sweden. Hydrology Research. 40(2-3):187-197.
Polhill JG, Filatova T, Schlüter M, Voinov A.  2016.  Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
Polhill JG, Filatova T, Schluter M, Voinov A.  2016.  Modelling systemic change in coupled socio-environmental systems. Environmental Modelling and Software. 75:318-332.
Hopkins M, Finlayson G, Duarte C, Whybrow S, Ritz P, Horgan GW, Blundell JE, Stubbs RJ.  2016.  Modelling the associations between fat-free mass, resting metabolic rate and energy intake in the context of total energy balance. International Journal of Obesity. 40:312-318.
Bagavathiannan MV, Begg GS, Gulden RH, Van Acker RC.  2012.  Modelling the dynamics of feral alfalfa populations and its management implications. PLoS One. 7:e39440.
Wright RF, Aherne J, Bishop K, Camarero L, Cosby BJ, Erlandsson M, Evans CD, Forsius M, Hardekopf H, Helliwell RC et al..  2006.  Modelling the effect of climate change on recovery of acidified freshwaters: relative sensitivity of individual processes in the MAGIC model. The Science of the Total Environment. 365(1-3):154-166.
Futter MN, Helliwell RC, Hutchins M, Aherne J.  2009.  Modelling the effects of changing climate and nitrogen deposition on nitrate dynamics in a Scottish mountain catchment. Hydrology Research. 40(2-3):153-166.
Stott AW, Humphry RW, Gunn GJ.  2010.  Modelling the effects of previous infection and re-infection on the costs of bovine viral diarrhoea outbreaks in beef herds. Veterinary Journal. 185:138-143.
Kettle H, Louis P, Holtrop G, Duncan SH, Flint HJ.  2015.  Modelling the emergent dynamics and major metabolites of the human colonic microbiota. Environmental Microbiology. 17:1615-1630.
Poggio L, Lassauce A, Gimona A.  2019.  Modelling the extent of northern peat soil and its uncertainty with sentinel: Scotland as example of highly cloudy region. Geoderma. 346:63-74.
McIntyre N, Ballard C, Bruen M, Bulygina N, Buytaert W, Cluckie I, Dunn SM, Ehret U, Ewen J, Gelfan A et al..  2014.  Modelling the hydrological impacts of rural land use change. Hydrology Research. 45:737-754.
Kuster EC, Bierman SM, Klotz S, Kuhn I.  2011.  Modelling the impact of climate and land use change on the geographical distribution of leaf anatomy in a temperate flora. Ecography. 34:507-518.
Abdul-Salam Y, Phimister E.  2019.  Modelling the impact of market imperfections on farm household investment in stand-alone solar PV systems. World Development. 116:66-76.
Hardstaff JL, Bulling MT, Marion G, Hutchings MR, White PCL.  2013.  Modelling the impact of vaccination on tuberculosis in badgers. Epidemiology and Infection. 141:1417-1427.
Helliwell RC, Aherne J, Nisbet TR, MacDougall G, Broadmeadow S, Sample J, Jackson-Blake L, Doughty R.  2014.  Modelling the long-term response of stream water chemistry to forestry in Galloway, Southwest Scotland. Ecological Indicators. 37:396-411.
Futter MN, Butterfield D, Cosby BJ, Dillon PJ, Wade AJ, Whitehead PJ.  2007.  Modelling the mechanisms that control in-stream dissolved organic carbon dynamics in upland and forested catchments. Water Resources Research, W02424.. 43(2):W02424.
Zhang X, Johnson SN, Gregory PJ, Crawford JW, Young IM, Murray PJ, Jasinka E.  2006.  Modelling the movement and survival of the root-feeding clover weevil, Sitona lepidus, in the root-zone of white clover. Ecological Modelling. 190:133-146. Abstract
Begg GS, Hockaday S, McNicol JW, Askew M, Squire GR.  2006.  Modelling the persistence of volunteer oilseed rape (Brassica napus). Ecological Modelling. 198:195-207. Abstract
Li S, Gilbert L, Harrison PA, Rounsevell MDA.  2016.  Modelling the seasonality of Lyme disease risk and the potential impacts of a warming climate within the heterogeneous landscapes of Scotland. Journal of the Royal Society Interface. 13:ArticleNo.20160140.
Liang T, Knappett JA, Leung AK, Bengough AG.  2020.  Modelling the seismic performance of root-reinforced slopes using the finite-element method. Geotechnique. 70:375-391.
Matthews R.  2007.  Modelling the sustainability of rural systems: concepts, approaches and tools. Journal of Agricultural Science. 145:636-641.
Gamado KM, Streftaris G, Zachary S.  2014.  Modelling under-reporting in epidemics. Journal of Mathematical Biology. 69:737-765.
Shepherd LVT, Hackett CA, Alexander CA, McNicol JW, Sungurtas JA, Stewart D, McCue K, Belknap WR, Davies HV.  2015.  Modifying glycoalkaloid content in transgenic potato - Metabolome impacts. Food Chemistry. 187:437-443.
Armas C, Schoeb C, Gutierrez JR.  2013.  Modulating effects of ontogeny on the outcome of plant-plant interactions along stress gradients. New Phytologist. 200:7-9.
Davies HV, Shepherd LVT, Burrell MM, Carrari F, Urbanczyk-Wochniak E, Leisse A, Hancock RD, Taylor MA, Viola R, Ross HA et al..  2005.  Modulation of fructokinase activity of potato (Solanum tuberosum) results in substantial shifts in tuber metabolism. Plant and Cell Physiology. 46:1103-1115. Abstract
McKenzie BM, Braga RA, Coelho DEC, Krol M, Horgan GW.  2016.  Moire as a low-cost, robust, optical-technique to quantify soil surface condition. Soil and Tillage Research. 158:147-155.
Williams AP, Avery LM, Killham K, Jones DL.  2008.  Moisture, sawdust, and bleach regulate the persistence of Escherichia coli O157 : H7 on floor surfaces in butcher shops. Food Control. 19(12):1119-1125.
Tyson T, O'Mahony ZG, Skelton M, Daly MB, Jones JT, Elsworth B, Phillips M, Blaxter M, Burnell AM.  2012.  A molecular analysis of desiccation tolerance mechanisms in the anhydrobiotic nematode Panagrolaimus superbus using expressed sequenced tags. BMC Research Notes. 5:e68.
Prigigallo MI, Mosca S, Cacciola SO, Cooke DEL, Schena L.  2015.  Molecular analysis of Phytophthora diversity in nursery-grown ornamental and fruit plants. Plant Pathology. 64:1308-1319.
Kikuchi T, Shibuya H, Jones JT.  2005.  Molecular and biochemical characterization of an endo-. Biochemical Journal. 389:117-125. Abstract
Sahi G, Hedley PP, Morris J, Loake GJ, MacFarlane SA.  2016.  Molecular and biochemical examination of spraing disease in potato tuber in response to Tobacco rattle virus infection. Molecular Plant-Microbe Interactions (MPMI). 29:822-828.
Grundy KC, Woodward S, Genney DR, Taylor AFS.  2012.  A molecular approach to explore the extent of the threatened fungus Hypocreopsis rhododendri within wood. Fungal Biology. 116:354-362.
Rae SJ, Macaulay M, Ramsay L, Leigh F, Matthews D, O'Sullivan DM, Donini P, Morris PC, Powell W, Marshall DF et al..  2007.  Molecular barley breeding. Euphytica. 158:295-303. Abstract
Sankhla IS, Tak N, Meghwal RR, Choudhary S, Tak A, Rathi S, Sprent JI, James EK, Gehlot HS.  2017.  Molecular characterization of nitrogen fixing microsymbionts from root nodules of Vachellia (Acacia) jacquemontii, a native legume from the Thar Desert of India. Plant and Soil. 410:21-40.
Sankhla IS, Tak N, Meghwal RR, Choudhary S, Tak A, Rathi S, Sprent JI, James EK, Gehlot HS.  2017.  Molecular characterization of nitrogen fixing microsymbionts from root nodules of Vachellia (Acacia) jacquemontii, a native legume from the Thar Desert of India. Plant and Soil. 410:21-40.
Ojha A, Tak N, Rathi S, Chouhan B, Rao SR, Barik SK, Joshi SR, Sprent JS, James EK, Gehlot HS.  2017.  Molecular characterization of novel Bradyrhizobium strains nodulating ErioSema Chinese and Flemingia vestita, important unexplored native legumes of the sub-Himalayan region (Meghalaya) of India. Systematic and Applied Microbiology. 40:334-344.
Wells B, Shaw H, Innocent G, Guido S, Hotchkiss E, Parigi M, Opsteegh M, Green J, Gillespie S, Innes EA et al..  2015.  Molecular detection of Toxoplasma gondii in water samples from Scotland and a comparison between the 529bp real-time PCR and ITS1 nested PCR. Water Research. 87:175-181.
Duarte IM, Almeida MTM, Duarte MM, Brown DJF, Neilson R.  2011.  Molecular diagnosis of trichodorid species from Portugal. Plant Pathology. 60:586-594.
Adam MAM, Phillips MS, Blok VC.  2007.  Molecular diagnostic key for identification of single juveniles of seven common and economically important species of root-knot nematode (Meloidogyne spp.). Plant Pathology. 56:190-197. Abstract
Morris WL, Ducreux LJM, Bryan GJ, Taylor MA.  2007.  Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297. Abstract
Morris WL, Ducreux LJM, Bryan GJ, Taylor MA.  2008.  Molecular dissection of sensory traits in the potato tuber. American Journal of Potato Research. 85:286-297.
Wiesel L, Newton AC, Elliot I, Booty D, Gilroy EM, Birch PRJ, Hein I.  2014.  Molecular effects of resistance elicitors from biological origin and their potential for crop protection. Frontiers in Plant Science. 5
Riga E, Karanastasi E, Oliveira CMG, Neilson R.  2007.  Molecular identification of two stubby root nematode species. American Journal of Potato Research. 84:161-167. Abstract
Scibetta S, Schena L, Chimento A, Cacciola SO, Cooke DEL.  2011.  A molecular method to assess Phytophthora diversity in environmental samples. Journal of Microbiological Methods. 88:356-368.
Madsen LH, Tirichine L, Jurkiewicz A, Sullivan JT, Heckmann AB, Bek AS, Ronson CW, James EK, Stougaard J.  2010.  The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.
Dauwe R, Morreel K, Goeminne G, Gielen B, Rohde A, Van Beeumen J, Ralph J, Boudet AM, Kopka J, Rochange SF et al..  2007.  Molecular phenotyping of lignin-modified tobacco reveals associated changes in cell-wall metabolism, primary metabolism, stress metabolism and photorespiration. Plant Journal. 52:263-285.
Sharma SK, Millam S, Hedley PE, McNicol JW, Bryan GJ.  2008.  Molecular regulation of somatic embryogenesis in potato: an auxin led perspective. Plant Molecular Biology. 68:185-201. Abstract
Griffiths BS, Donn S, Neilson R, Daniell TJ.  2006.  Molecular sequencing and morphological analysis of a nematode community. Applied Soil Ecology. 32:325-337. Abstract
Oliveira CMG, Inomoto MM, Bessi R, Tomazini MDO, Blok VC.  2011.  Molecular techniques and classical taxonomy on plant-parasitic nematodes diagnosis. Annual Review of Plant Pathology. 19:309-336.
Oliver DM, Hanley ND, van Niekerk M, Kay D, Heathwaite AL, Rabinovici SJM, Kinzelman JL, Fleming LE, Porter J, Shaikh S et al..  2016.  Molecular tools for bathing water assessment in Europe: Balancing social science research with a rapidly developing environmental science evidence-base. Ambio. 45:52-62.
Oliver DM, Hanley ND, van Niekerk M, Kay D, Heathwaite AL, Rabinovici SJM, Kinzelman JL, Fleming LE, Porter J, Shaikh S et al..  2016.  Molecular tools for bathing water assessment in Europe: balancing social science research with a rapidly developing environmental science evidence-base. Ambio. 45:52-62.
Owen G, Perks M, Benskin C, Wilkinson ME, Jonczyk J, Quinn PF.  2012.  Monitoring agricultural diffuse pollution through a dense monitoring network in the River Eden Demonstration Test Catchment, Cumbria, UK. Area. 44:443-453.
Chaerle L, Leinonen I, Jones HG, van der Straeten D.  2007.  Monitoring and screening plant populations with combined thermal and chlorophyll fluorescence imaging. Journal of Experimental Botany. 58:773-784. Abstract
Simpson CG, Fuller J, Maronova M, Kalyna M, Davidson D, McNicol JW, Barta A, Brown JWS.  2008.  Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts. The Plant Journal. 53:1035-1048. Abstract

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The James Hutton Research Institute is the result of the merger in April 2011 of MLURI and SCRI. This merger formed a new powerhouse for research into food, land use, and climate change.