Publications list
Novel environment exploration and home range size in starlings Sturnus vulgaris. Behavioral Ecology. 21(6):1321-1329.
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2010.
A novel framework for linking functional diversity of plants with other trophic levels for the quantification of ecosystem services. Journal of Vegetation Science. 24:942-948.
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2013.
A novel grass hybrid to reduce flood generation in temperate regions. Nature Scientific Reports, 3, Article no.1683..
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2013.
Novel industry-government governance mechanisms for the eradication of bovine viral diarrhoea in the UK and Ireland. Journal of Rural Studies. 81:324-355.
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2021.
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2018.
A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
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2008.
Novel microsatellite markers for the analysis of Phytophthora infestans populations. Plant Pathology. 55:311-319. Abstract
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2006.
A novel molecular approach for rapid assessment of soil nematode assemblages û variation, validation and potential applications. Methods in Ecology and Evolution. 3:12-23.
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2012.
A novel Phytophthora infestans haustorium-specific membrane protein is requred for infection of potato. Cellular Microbiology. 10:2271-2284. Abstract
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2008.
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2009.
Novel quorum sensing-controlled genes in Erwinia carotovora subsp. carotovora: identification of a fungal elicitor homologue in a soft-rotting bacterium. Molecular Plant-Microbe Interactions. 18:343-353. Abstract
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2005.
A novel technique for retrospective genetic analysis of the response to vaccination or infection using cell-free DNA from archived sheep serum and plasma. Veterinary Research. 51:ArticleNo.9..
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2020.
A novel, efficient and sustainable magnetic sludge biochar modified by graphene oxide for environmental concentration imidacloprid removal. Journal of Hazardous Materials. 407:ArticleNo.124777.
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2021.
A novel, high-welfare methodology for evaluating poultry red mite interventions in vivo. Veterinary Parasitology. 267:42-46.
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2019.
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2007.
Now you see it, now you don't: The challenge of detecting, monitoring and conserving ectomycorrhizal fungi. Fungal Ecology. 5:633-640.
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2012.
NP stoichiometry of low-alpine heathland: usefulness for bio-monitoring and prediction of pollution impacts. Biological Conservation. 138(1-2):100-108.
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2007.
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2011.
Nuclear processes associated with plant immunity and pathogen susceptibility. Briefings in Functional Genomics. 14:243-252.
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2015.
Nucleolar localisation of Potato leafroll virus capsid proteins. Journal of General Virology. 86:2891-2896. Abstract
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2005.
Nucleoli: Composition, function and dynamics (Review). Plant Physiology. 158:44-51.
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2012.
Nucleotide sequence analysis of two lignin genes in Acacia auriculiformis x Acacia mangium hybrid for enhancement of wood pulp quality. Tree Genetics and Genome. 9:1369-1381.
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2013.
The NuGO proof of principle study package: a collaborative research effort of the European Nutrigenomics Organisation. Genes and Nutrition. 3:147-151.
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2008.
Number of mates and timing of mating affect offspring growth in the small marsupial, Antechinus agilis. Animal Behaviour. 71(2):289-297.
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2006.
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2011.
Nutrient acquisition in four Mediterranean gorgonian species. Marine Ecology Progress Series. 473:179-188.
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2013.
Nutrient emissions to water from septic tank systems in rural catchments: uncertainties and implications for policy. Environmental Science and Policy.. 24:71-82.
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2012.
Nutrient mineralisation and microbial functional diversity in a restored bog approach natural conditions 10 years post restoration. Soil Biology and Biochemistry. 64:37-47.
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2013.
Nutritional and phytochemical content of high-protein crops. Journal of Agricultural and Food Chemistry. 64:7800-7811.
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2016.
Observation of extensive chromosome axis remodeling during the "diffuse-phase" of meiosis in large genome cereals. Frontiers in Plant Science. 8:ArticleNo.1235.
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2017.
Observations on the epidemiology and interactions between myxomatosis, coccidiosis and helminth parasites in a wild rabbit population in Scotland. European Journal of Wildlife Research. 59:557-562.
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2013.
Observed soil temperature trends associated with climate change in Canada. Journal of Geophysical Research. 116:16pp.
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2011.
Occurrence and distribution of potato pests and diseases in the major potato growing areas in Kenya. Potato Research. 56:325-342.
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2013.
Occurrence of priming in the degradation of lignocellulose in marine sediments. PLoS ONE. 10:e0143917.
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2015.
Occurrence of resistance-breaking populations of root-knot nematodes on tomato in Greece. European Journal of Plant Pathology. 113:101-105. Abstract
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2005.
Occurrence of trace elements and antibiotics in manure- based fertilizers from the Zhejiang Province of China. Science of the Total Environment. 559:174-181.
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2016.
Ocean acidification as a multiple driver: how interactions between changing seawater carbonate parameters affect marine life. Marine and Freshwater Research. 781:263-274.
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2020.
Oceanic embodiments: living ENSO events in coastal TImor-Leste. Political Geography. 70:102-116.
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2019.
Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance. Proceedings of the Royal Society B, Biological Sciences. 284:ArticleNo.1860.
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2017.
Oceans of opportunity or stormy seas? What does the future hold for developments in European marine policy Philosophical Transactions of the Royal Society of London, A.. 370:5682-5700.
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2012.
The ODD protocol for describing agent-based and other simulation models: a second update to improve clarity, replication, and structural realism. Journal of Artificial Societies and Social Simulation. 23:ArticleNo.7.
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2020.
The ODD protocol for describing individual-based and agent-based models: A first update. Ecological Modelling. 221(23):2760-2768.
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2010.
ODD updated. Journal of Artificial Societies and Social Simulation.. 13(4):9.
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2010.
Of organic farmers and "good farmers": changing habitus in rural England. Journal of Rural Studies. 28:232-240.
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2012.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T if genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72. Environmental Microbiology Reports. 9:223-238.
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2017.
Old and new faces of the nucleolus. Workshop on the nucleolus and disease. EMBO Reports. 10:35-40. Abstract
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2008.
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2021.
Olive oil nutritional labeling by using Vis/NIR spectroscopy and compositional statistical methods. Innovative Food Science and Emerging Technologies. 51:139-147.
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2019.
On the effects of winter flooding on the hydrological balance of rice areas in northern Italy. Journal of Hydrology. 590:ArticleNo.125401..
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2020.
On the interplay of actors in the co-management of natural resources - a dynamic perspective. Journal of Environmental Management. 64:158-168.
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2014.
On the mechanism of exfoliation of "Vermiculite". Clay Minerals. 48:563-582.
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2013.
On the multifunctionality of hunting - an institutional analysis of eight cases from Europe and Africa. Journal of Environmental Planning and Management. 56:531-552.
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2013.
On the relationships between stomatal resistance and leaf temperatures in thermography. Agricultural and Forest Meteorology. 148:1908-1912.
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2008.
On the role of ideas of human nature in shaping attitudes towards environmental governance. Human Ecology. 38(1):123.-135.
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2010.
On the role of women in bushmeat hunting - insights from Tanzania and Ethiopia. Journal of Rural Studies. 28:622-630.
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2012.
On the use of unmanned aerial systems for environmental monitoring. Remote Sensing. 10:ArticleNo.641.
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2018.
On the use of unmanned aerial systems for environmental monitoring. Remote Sensing. 10:ArticleNo.641.
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2018.
One century of Nordic barley breeding: nitrogen use efficiency, agronomic traits and genetic diversity. Journal of Agricultural Science. 155:582-598.
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2017.
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2011.
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2012.
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2015.
Onsite geometric calibration of RPAS mounted sensors for SfM photogrammetric geomorphological surveys. Earth Surface Processes and Landforms..
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2022.
Ontologies for transparent integrated human-natural system modelling. Landscape Ecology. 24(9):1255-1267.
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2009.
The oomycete broad-host-range pathogen Phytophthora capsici. Molecular Plant Pathology. 13:329-337.
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2012.
The oomycete microbe-associated molecular pattern Pep-13 triggers SERK3/BAK1-independent plant community. Plant Cell Reports. 38:173-182.
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2019.
Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistance. Current Opinion in Plant Biology. 11:373-379. Abstract
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2008.
Oomycetes seek help from the plant: Phytophthora infestans effectors target host susceptibility factors. Molecular Plant. 9:636-638.
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2016.
Open access for social simulation. Journal of Artificial Societies and Social Simulation. 10(3):10.
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2007.
Open-system chemical behavior in deep Wilcox Group mudstones, Texas Gulf. Marine and Petroleum Geology.. 27(9):1804-1818.
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2010.
Opening the climate envelope reveals no macroscale associations with climate in European birds. Proceedings of the National Academy of Sciences, USA. 105:14908-14912.
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2008.
Operational considerations for hot-washing in potato crisp manufacture. Food and Bioproducts Processing. 124:387-396.
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2020.
Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
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2017.
Operationalising ecosystem service assessment in bayesian belief networks: Experiences within the OpenNESS project. Ecosystem Services. 29:452-464.
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2018.
Operationalising sustainability science for a sustainability directive? Reflecting on three pilot projects Geographical Journal. 173(4):343-357.
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2007.
Operationalizing an ecosystem services-based approach using Bayesian Belief Networks: An application to a riparian buffer zone. Ecological Economics. 110:15-27.
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2015.
Opportunities and challenges for terrestrial carbon offsetting and marketing, with some implications for forestry in the UK. South and East European Journal of Forestry (SEEFOR). 1:69-79.
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2011.
Opportunities and challenges in using catchment-scale storage estimates from cosmic ray neutron sensors for rainfall-runoff modelling. Journal of Hydrology. 586:ArticleNo.124878.
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2020.
Opportunities for improving phosphorus-use efficiency in crop plants. New Phytologist. 195:306-320.
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2012.
Opportunities for mobilizing recalcitrant phosphorus from agricultural soils: a review. Plant and Soil. 427:5-16.
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2018.
Optimal harvesting decision paths when timber and water have an economic value in uneven forests. Forests. 11:ArticleNo.903.
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2020.
Optimisation of competition indices using simulated annealing and artificial neural networks. Ecological Modelling. 214(2-4):375-384.
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2008.
An optimised method for the extraction of bacterial mRNA from plant roots infected with Escherichia coli O157:H7. Frontiers in Microbiology Research. 5
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2014.
Optimised processing of faba bean (Vicia faba L.) kernels as a brewing adjunct. Journal of the Institute of Brewing. 127:13-20.
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2021.
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2013.
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2015.
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2007.
Optimising thermal imaging as a technique for detecting stomatal closure induced by drought stress under greenhouse conditions. Physiologia Plantarum. 127:507-518. Abstract
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2006.
Optimization of in vitro inhibition of HT-29 colon cancer cell cultures by Solanum tuberosum L. extracts. Food and Function. 6:72-83.
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2015.
Optimization of spectral pre-processing for estimating soil conditions on small farms. Soil Use and Management.
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2021.
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2011.
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2015.
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2022.
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2011.
Organic matter characterization of sediments in two river beaches from Northern Portugal for forensic application. Forensic Science International. 233:403-415.
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2013.
Organic matter chemistry controls greenhouse gas emissions from permafrost peatlands. Soil Biology and Biochemistry. 98:42-53.
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2016.
Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities. Plant and Soil. 427:191-208.
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2018.
Organic phosphorus in the terrestrial environment: a perspective on the state of the art and future priorities. Plant and Soil. 427:191-208.
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2018.
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2016.
Organization and evolution of subtelomeric satellite repeats in the potato genome. Genes Genomes Genetics. 1:85-92.
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2011.
Organophosphorus degrading bacteria: ecology and industrial applications. Nature Review Microbiology. 7(2):156-164.
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2009.
Oriented immobilisation of engineered single-chain antibodies to develop biosensors for virus detection. Journal of Virological Methods. 134:164-170. Abstract
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2006.
Origin might matter; people matter, too. A response to the comment by Rejmanek and Simberloff, 2016. Environmental Conservation. 44:100-101.
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2017.
Origin of the roles of potassium in biology. Bioessays. :ArticleNo.e20000302.
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2020.
Osmotic responses of different strains of Steinernema carpocapsae. Nematology. 13:845-851.
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2011.
Osmotic stress tolerance of Capsella bursa-pastoris seeds contributes to bet-hedging in arable fields. Association of Applied Biologists - Agricultural Ecology Research: It's Role in Delivering Sustainable Farm Systems, Dundee, 15-16 June 2011. Aspects of Applied Biology. 109:39-40.
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2011.
Otolith chemistry reveals seamount fidelity in a deepwater fish. Deep-Sea Research, Part I. 121:183-189.
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2017.
Outcome of sexual reproduction in the Phytophthora infestans population in Estonian potato fields. European Journal of Plant Pathology. 152:395-407.
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2018.
Outdoor recreation for older adults in Scotland: qualitatively exploring the multiplicity of constraints to participation. International Journal of Environmental Research and Public Health. 18:ArticleNo.7705.
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2021.
An outlook on protein S-acylation in plants: what are the next steps? Journal of Experimental Botany. 68:3155-3164.
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2017.
Over winter cover crops provide yield benefits for spring barley and maintain soil health in northern Europe. European Journal of Agronomy. 130:ArticleNo.126363.
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2021.
Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry. Journal of Agricultural and Food Chemistry. 60:5360-5366.
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2012.
Overcoming resistance and resilience of an invaded community is necessary for effective restoration: a multi-site bracken control study. Journal of Applied Ecology. 50:156-167.
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2013.
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2006.
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2018.
Overriding importance of water table in the greenhouse gas balance of managed peatlands. Nature. Published online.
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2021.
Overstory and understory vegetation interact to alter soil community composition and activity. Plant and Soil. 352:65-84.
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2012.
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2016.
Overview of holistic application of biogas for small scale farmers in Sub-Saharan Africa. Biomass and Bioenergy. 70:4-16.
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2014.
Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status. Agricultural and Forest Entomology. 14:157-163.
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2012.
Oxalate production by fungi: significance in geomycology, biodeterioration and bioremediation. Fungal Biology Reviews. 28:36-55.
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2014.
Ozone and life on the Archaean earth. Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 365:1889-1901. Abstract
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2007.
p15 encoded by Garlic virus X is a pathogenicity factor and RNA silencing suppressor. Journal of General Virology. 99:1515-1521.
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2018.
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2018.
Palaeo-environments and human experience. Archaeological Dialogues. 19:51-54.
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2012.
Palatability mapping: a koala's eye view of spatial variation in habitat quality. Ecology. 91(11):3165-3176.
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2010.
Pantoea ananatis utilizes a type VI secretion system for pathogenesis and bacterial competition. Molecular Plant-Microbe Interactions. 28:420-431.
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2015.
Paraburkholderia youngii sp. nov. and 'Paraburkholderia atlantica' - Brazilian and Mexican Mimosa-associated rhizobia that were previously known as Paraburkholderia tuberum sv. Mimosae. Systematic and Applied Microbiology. 44:ArticleNo.126152.
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2021.
Parallel mircrobial ecology of pasteuira and nematode species in Scottish soils. Frontiers in Plant Science. 10:ArticleNo.1763.
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2020.
Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. Journal of Biogeography. 39:2225-2239.
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2012.
Parasites and the dynamics of wild mammal populations. Animal Science. 82(6):775-781.
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2007.
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2008.
Parental differences in brood provisioning by Hen Harriers Circus cyaneus. Bird Study. 55(2):209-215.
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2008.
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2019.
Partial complementation of Sinorhizobium meliloti bacA mutant phenotypes by the Mycobacterium tuberculosis BacA protein. Journal of Bacteriology. 195:389-398.
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2013.
Partial sequence and RT-PCR diagnostic test for the plant rhabdovirus Raspberry vein chlorosis virus. Plant Pathology. 60:462-467.
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2011.
Participation-prescription tension in natural resource management: the case of diffuse pollution in Scottish water management. Environmental Policy and Governance. 25:111-124.
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2015.
Participatory environmental education and WTP for river basin management: empirical evidence from Nigeria. Land Economics. 82(4):542-561.
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2006.
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2015.
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2007.
Participatory scenario planning for developing innovation in community adaptation responses: three contrasting examples from Latin America. Regional Environmental Change. Published online.
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2016.
Participatory scenario planning for developing innovation in community adaptation responses: three contrasting examples from Latin America. Regional Environmental Change. 16:1685-1700.
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2016.
Participatory scenario-planning in place-based social-ecological research: insights and experiences from 23 case studies. Ecology and Society. 20:ArticleNo.34.
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2015.
Participatory wildlife surveys in communal lands: a case study from Simanjiro, Tanzania. African Journal of Ecology. 8(3):727-735.
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2010.
Partitioning net interactions among plants along altitudinal gradients to study community responses to climate change. Functional Ecology. 28:75-86.
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2014.
Partitioning of soil phosphorus among arbuscular and ectomycorrhizal trees in tropical and subtropical forests. Ecology Letters. 21:713-723.
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2018.
Partitioning soil surface CO2 efflux into autotrophic and heterotrophic components, using natural gradients in soil &13C in an undisturbed savannah soil. Soil Biology and Biochemistry. 40(7):1575-1582.
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2008.
A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology & Biochemistry. 41:1450-1456. Abstract
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2009.
A passive sampling method for radiocarbon analysis of soil respiration using molecular sieve. Soil Biology and Biochemistry. 41(7):1450-1456.
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2009.
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2014.
Past and future perspectives on mathematical models of tick-borne pathogens. Parasitology. 143:850-859.
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2016.
Patchy promiscuity: machine learning applied to predict the host specificity of Salmonella enterica and Escherichia coli. Microbial Genomics, 3, (Open Access).
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2017.
Paternal attractiveness and the effects of differential allocation of parental investment. Animal Behaviour. 113:69-78.
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2016.
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2011.
Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist. Published online..
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In Press.
Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist. 221:1634-1648.
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2019.
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2006.
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2012.
Pathogenesis of scrapie in ARQ/ARQ sheep after subcutaneous infection: Effect of lymphadenectomy and immune cell subset changes in relation to prion protein accumulation. Veterinary Immunology and Immunopathology. 152:348-358.
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2013.
Pathogenesis, parasitism and mutualism in the trophic space of microbe-plant interactions. Trends in Microbiology. 18:365-373.
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2010.
Pathogenic potential to humans of bovine Escherichia coli O26, Scotland. Emerging Infectious Diseases. 18:439-448.
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2012.
Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
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2009.
Pathogens in urban wastewaters suitable for reuse. Urban Water Journal. 6(4):291-301.
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2009.
Pathways linking biodiversity to human health: A conceptual framework. Environment International. 150:ArticleNo.106420.
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2021.
Patterns of attention to renewable energy in the British farming press from 1980 to 2013. Renewable and Sustainable Energy Reviews. 54:959-973.
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2016.
Patterns of bird functional diversity on land-bridge island fragments. Journal of Animal Ecology. 82:781-790.
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2013.
Patterns of clonal diversity in three species of sub-arctic willow (Salix lanata, Salix lapponum and Salix herbacea). Plant Systematics and Evolution. 269:75-88. Abstract
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2007.
Patterns of diversifying selection in the phytotoxin-like scr74 gene family of Phytophthora infestans. Molecular Biology and Evolution. 22:659-672. Abstract
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2005.
Patterns of genetic and eco-geographical diversity in Spanish barleys. Theoretical and Applied Genetics. 116:271-282. Abstract
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2008.
Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics. 119:175-187.
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2009.
Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theoretical and Applied Genetics. 122:523-531.
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2011.
Patterns of solanidine glycoalkaloid variation in four gene pools of the cultivated potato. Genetic Resources and Crop Evolution. 51:805-813. Abstract
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2005.
Payments for Water Ecosystem Services in Latin America: a literature review and conceptual model. Ecosystem Services. 6:122-132.
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2013.
A PCR-based method for detecting the mycelia of stipitate hydnoid fungi in soil. Journal of Microbiological Methods. 75(1):40-46.
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2008.
Peat, water and plant tissue chemistry monitoring: A seven-year case-study in a restored peatland. Wetlands. 30(1):159-170.
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2010.
Peatland afforestation in the UK and consequences for carbon storage. Mires and Peat. 23:ArticleNo.1..
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2019.
Pectin engineering to modify product quality in potato. Plant Biotechnology Journal. 9:848-856.
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2011.
Pectobacterium atrosepticum KDPG aldolase, Eda, participates in the Entner-Doudoroff pathway and independently inhibits expression of virulence determinants. Molecular Plant Pathology. 22:271-283.
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2021.
Pectobacterium parvum sp. nov., having a Salmonella SPI-1-like Type III secretion system and low virulence. International Journal of Systematic and Evolutionary Microbiology. 70:2440-2448.
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2020.
The People and Landscape Model (PALM): An agent-based spatial model of livelihood generation and resource flows in rural households and their environment. Ecological Modelling. 194(4):329-343.
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2006.
People, places and earnings differentials. Regional Studies. 561:389-403.
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2017.
People, predators and perceptions: patterns of livestock depredation by snow leopards and wolves. Journal of Applied Ecology. 50:550-560.
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2013.
Perceived biodiversity, sound, naturalness and safety enhance the restorative quality and wellbeing benefits of green and blue space in a neotropical city. Science of the Total Environment. 755:ArticleNo.143095.
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2021.
The perception of the welfare of sheep in extensive systems. Small Ruminant Research. 62(3):215-225.
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2006.
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2009.
Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation. International Journal of Numerical Methods for Heat & Fluid Flow. 18:656-672. Abstract
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2008.
The performance of occupational closure: the case of agriculture and gender. Sociologia Ruralis. 60:40-57.
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2020.
Peri-conceptional changes in maternal exposure to sewage sludge chemicals disturbs fetal thyroid gland development in sheep. Molecular and Cellular Endocrinology. 367:98-108.
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2013.
Periodic multivariate normal hidden Markov models for the analysis of water quality time series. Environmetrics. 22:304-317.
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2011.
Permeability of intertidal sandflats: Impact of temporal variability on sediment metabolism. Continental Shelf Research. 42:41-50.
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2012.
Permeable reactive interceptors - blocking diffuse nutrient and greenhouse gases losses in key areas of the farming landscape. Journal of Agricultural Science. 152:S71-S81.
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2014.
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2012.
Persistence of Mycobacterium avium subspecies paratuberculosis in rabbits: the interplay between horizontal and vertical transmission. Journal of Applied Ecology. 44:302-311. Abstract
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2007.
Personality and collective decision-making in foraging herbivores. Proceedings of the Royal Society of London, B. 277(1684):1093-1099.
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2010.
A perspective on crn proteins in the genomics age: evolution, classification, delivery and function revisited. Frontiers in Plant Science. 8
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2017.
Perspectives on low temperature tolerance and vernalization sensitivity in barley: Prospects for facultative growth. Frontiers in Plant Science. 11:ArticleNo.585927.
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2020.
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2020.
Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid. PLoS Pathogens. 16:ArticleNo.e1008235.
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2020.
PES what a mess? An analysis of the position of environmental professionals in the conceptual debate on payments for ecosystem services Ecological Economics. 154:218-237.
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2018.