Publications list
Biochar addition to an arsenic contaminated soil increases arsenic concentrations in the pore water but reduces uptake to tomato plants (Solanum lycopersicum L.). Science of the Total Environment. 454-455:598-603.
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2013.
The immobilisation and retention of soluble arsenic, cadmium and zinc by biochar. Environmental Pollution. 159:474-480.
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2011.
Carbon storage and fluxes in existing and newly created urban soils. Journal of Environmental Management. 104:158-165.
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2012.
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2011.
Environmental risks and futures. Procedia Environmental Sciences, 21, 1-2..
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2014.
Modelling the persistence of volunteer oilseed rape (Brassica napus). Ecological Modelling. 198:195-207. Abstract
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2006.
Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots. Transgenic Research. 16:51-63. Abstract
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2007.
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2012.
A functional overview of conservation biological control. Crop Protection. 97:145-158.
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2017.
Heterogeneity in the distribution of genetically modified and conventional oilseed rape within fields and seed lots. Transgenic Research. 17:805-816. Abstract
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2008.
Simulating soil carbon sequestration from long term fertilizer and manure additions under continuous wheat using the DailyDayCent model. Nutrient Cycling in Agroecosystems. 109:291-302.
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2017.
Soil organic carbon sequestration and mitigation potential in a rice cropland in Bangladesh - a modelling approach. Field Crops Research. 226:16-27.
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2018.
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2019.
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data. 4:ArticleNo.170044.
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2017.
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L. Scientific Data. 4:ArticleNo.170044.
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2017.
Competitive sorption and diffusion of chromate and sulphate in a flow system with goethite in gel beads. Journal of Contaminant Hydrology. 86(3-4):262-278.
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2006.
Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.
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2010.
Study of the effect of presence or absence of protozoa on rumen fermentation and microbial protein contribution to the chyme. Journal of Animal Science. 89:4163-4174.
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2011.
Metabolomics and food processing: from semolina to pasta. Journal of Agricultural and Food Chemistry. 59:9366-9377.
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2011.
Impact of pH on lactate formation and utilization by human fecal microbial communities. Applied and Environmental Microbiology. 73:6526-6533. Abstract
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2007.
Rates of production and utilization of lactate by microbial communities from the human colon. FEMS Microbiology Ecology. 77:107-119.
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2011.
UK land-use change and its impact on SOC: 1925-2007. Global Biogeochemical Cycles. 25
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2011.
Digging deeper: Gardening as a way to develop non-human relationships through connection with nature. European Journal of Ecopsychology. 7:1-18.
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2021.
Foetal and post-natal exposure of sheep to sewage sludge chemicals disrupts sperm production in adulthood in a subset of animals. International Journal of Andrology. 35:317-329.
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2012.
Foetal hypothalamic and pituitary expression of GnRH and galanin systems is disturbed by exposure to sewage sludge chemicals via maternal ingestion. Journal of Neuroendocrinology. 22(6):527-533.
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2010.
Effects of exposure to environmental chemicals during pregnancy on the development of the male and female reproductive axes. Reproduction in Domestic Animals. 47:15-22.
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2012.
Exposure to chemical cocktails before or after conception - the effect of timing on ovarian function. Molecular and Cellular Endocrinology. 376:156-172.
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2013.
Exposure to a complex cocktail of environmental endocrine disrupting compounds disturbs the KiSS-1/GPR54 system in ovine hypothalamus and pituitary gland. Environmental Health Perspectives. 117(10):1556-1562.
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2009.
Deliberative processes for comprehensive evaluation of agroecological models. A review. Agronomy for Sustainable Development. 35:589-605.
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2015.
Validation of biophysical models: issues and methodologies: a review. In: Sustainable Farming Systems, Springer Sciencce. 30:109-130.
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2010.
Validation of biophysical models: issues and methodologies. A review. Agronomy for Sustainable Development.. 30(1):109-130.
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2010.
Phytaspase-mediated precursor processing and maturation of the wound hormone systemin. New Phytologist. 218:1167-1178.
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2018.
Method speciation in surface sediments of the Vigo Ria (NW Iberian Peninsula). Scientia Marina. 72:119-126.
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2008.
Chemical forms and distribution of heavy metals in core sediments from the Gdansk Basin, Baltic Sea. Polish Journal of Environmental Studies. 16:505-515.
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2007.
Contrasting impacts of afforestation on nitrous oxide and methane emissions. Agricultural and Forest Meteorology. 198:82-93.
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2014.
National-scale geodata describe widespread accelerated soil erosion. Geoderma. 371:ArticleNo.114378.
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2020.
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2021.
Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology. 179:209-215.
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2011.
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2012.
Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil. ISME Journal. 8:1336-1345.
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2013.
Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits. Journal of Experimental Botany. 62:59-68.
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2011.
Root responses to soil physical conditions; growth dynamics from field to cell. Journal of Experimental Botany. 57:437-447. Abstract
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2006.
Root elongation is restricted by axial but not by radial pressures: so what happens in field soil? Plant and Soil. 360:15-18.
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2012.
Water dynamics of the root zone: Rhizosphere biophysics and its control on soil hydrology. Vadose Zone Journal. 11
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2012.
PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract
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2010.
Root hairs aid soil penetration by anchoring the root surface to pore walls. Journal of Experimental Botany. 67:1071-1078.
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2016.
Preface: Future roots of productivity. Journal of Experimental Botany. 64:1179.
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2013.
Target-specificity of feral pig baits under different conditions in a tropical rainforest. Wildlife Research. 38:370-378.
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2011.
Using a general index approach to analyse camera-trap abundance indices. Journal of Wildlife Management. 75:1222-1227.
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2011.
Testing target-specific bait delivery for controlling feral pigs in a tropical rainforest. Ecological Management and Restoration. 12:226-229.
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2011.
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2014.
Pushing boundaries in above-belowground interactions. Functional Ecology. 26:305-306.
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2012.
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2013.
Multiple mechanisms enable invasive species to suppress native species. Amercian Journal of Botany. 98:1086-1094.
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2011.
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2013.
Can plant-microbe-insect interactions enhance or inhibit the spread of invasive species? Functional Ecology. 27:661-671.
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2013.
Beyond the black box: promoting mathematical collaborations for elucidating interactions in soil ecology. Ecosphere. 10:ArticleNo.e02799.
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2019.
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2016.
Potentials and pitfalls in the analysis of bipartite networks to understand plant-microbe interactions in changing environments. Functional Ecology.. 33:107-117.
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2019.
Plant lignin content altered by soil microbial community. New Phytologist. 206:166-174.
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2015.
Response to soil biota by native, introduced non-pest, and pest grass species: is responsiveness a mechanism for invasion? Biological Invasions. 15:1343-1353.
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2013.
Review of the annual phosphorus loss estimator tool-a new model for estimating phosphorus losses at the field scale. Soil Use and Management. 30:337-341.
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2014.
Defoliation patterns and their implications for the management of vegetative tropical pastures to control intake and diet quality by cattle. Grass and Forage Science. 71:424-436.
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2016.
Can faecal markers detect a short term reduction in forage intake by cattle? Animal Feed Science and Technology. 194:44-57.
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2014.
Foraging mechanics and their outcomes for cattle grazing reproductive tropical swards. Applied Animal Behaviour Science. 113(1-3):15-31.
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2008.
Assessment of the draft hydrological basin plan of the Guadalquivir River Basin (Spain). Water Resources Development.. 28:43-55.
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2012.
A cost effectiveness analysis of water saving measures for the Water Framework Directive: the case of the Guadalquivir river basin in Southern Spain. Water Resources Management. 25:623-640.
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2011.
Detection of lactobacillic acid in low erucic rapeseed oil - A note of caution when quantifying cyclic fatty acid monomers in vegetable oils. Chemistry and Physics of Lipids. 163:698-702.
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2010.
The effects of arbuscular mycorrhizal fungal colonisation on nutrient status, growth, productivity, and canker resistance of apple (Malus pumila). Frontiers in Microbiology. 9:ArticleNo.1461.
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2018.
F-actin dynamics in Neurospora crassa. Eukaryotic Cell. 9:547-557.
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2010.
The transfer of radionuclides from saltmarsh vegetation to sheep tissues and milk. Journal of Environmental Radioactivity. 98(1-2):36-49.
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2007.
Phenology and climate change in Africa and the decline of Afro-Palearctic migratory bird populations. Remote Sensing in Ecology amd Conservation. 5:55-69.
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2019.
The transfer of radiocaesium to ewes through a breeding cycle - an illustration of the pitfalls of the transfer coefficient. Journal of Environmental Radioactivity. 98(1-2):24-35.
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2007.
Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology. 8:333-341. Abstract
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2007.
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2009.
The Tarland Catchment Initiative and its effect on stream water quality and macroinvertebrate indices. Journal of Environmental Quality. 41:314-321.
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2012.
Calibrating and testing APSIM for wheat-faba bean pure cultures and intercrops across Europe. Field Crops Research. 264:ArticleNo.108088.
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2021.
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2017.
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2012.
Functional traits and local environment predict vegetation responses to disturbance: a pan-European multi-site-experiment. Journal of Ecology. 99:777-787.
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2011.
The physiological basis of genotypic differences in nitrogen use efficiency in oilseed rape (Brassica napus L.). Field Crops Research. 119:365-373.
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2010.
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2015.
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2013.
Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health. 10:-423.
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2010.
A phylogenetic study of Boletus section Boletus in Europe. Persoonia. 20:1-7.
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2008.
Applying plant genomics to crop improvement. Genome Biology. 8:302-302. Abstract
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2007.
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2014.
Highlights of the mini-symposium on extracellular vesicles in inter-organismal communication, held in Munich, Germany, August 2018. Journal of Extracellular Vesicles. 8:ArticleNo.1590116.
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2019.
Detection and differentiation between potato (Solanum tuberosum) diseases using calibration models trained with non-imaging spectrometry data. Computers and Electronics in Agriculture. 167:ArticleNo.105056..
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2019.
Three-way interactions between plants, microbes and insects. Functional Ecology. 27:567-573.
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2013.
A graphical method for dating chicks using bivariate body measurements. Journal of Agricultural, Biological and Environmental Statistics. 14:443-451.
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2009.
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2010.
Hydrological and chemical controls on nutrient and contaminant loss to water in agricultural landscapes. Water. 12:ArticleNo.3379.
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2020.
What is the deal with the Green Deal: Will the new strategy help to improve European freshwater quality beyond the Water Framework Directive? Science of the Total Environment. 791:ArticleNo.148080.
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2021.
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2010.
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2010.
Analysis of improvements in nitrogen use efficiency associated with 75 years of spring barley breeding. European Journal of Agronomy. 42:49-58.
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2012.
Yield response to fungicide of spring barley genotypes differing in disease susceptibility and canopy structure. Field Crops Research. 139:9-19.
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2012.
Soil compaction - N interactions in barley: Root growth and tissue composition. Soil and Tillage Research. 106:241-246.
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2010.
Diagonal and orthogonal neighbours in grid-based simulations: Buffon's stick after 200 years. Ecological Modelling. 192(3-4):637-644.
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2006.
Genomics: the early days of late blight. eLife. 2:e00954.
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2013.
Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistance. Current Opinion in Plant Biology. 11:373-379. Abstract
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2008.
How agro-ecological research helps to address food security issues under new IPM and pesticide reduction policies for global crop production systems. Journal of Experimental Botany. 62:3251-3261.
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2011.
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2007.
Crops that feed the world 8: potato: are the trends of increased global production sustainable? Food Security. 4:477-508.
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2012.
Trafficking arms: oomycete effectors enter host plant cells. Trends in Microbiology. 14:8-11. Abstract
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2006.
Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
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2009.
Signatures of adaptation to plant parasitism in nematode genomes. Parasitology. 142:S71-S84.
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2015.
Towards a simple dynamic process conceptualization in rainfall runoff models using multi-criteria calibration and tracers in temperate, upland catchments. Hydrological Processes.. 24(3):260-275.
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2010.
Using lumped conceptual rainfall-runoff models to simulate daily isotope variability with fractionation in a nested mesoscale catchment. Advances in Water Resources. 34:383-394.
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2011.
Assessing the value of high-resolution isotope tracer data in the stepwise development of a lumped conceptual rainfall-runoff model. Hydrological Processes. 24(16):2335-2348.
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2010.
Using time domain and geographic source tracers to conceptualize streamflow generation processes in lumped rainfall-runoff models. Water Resources Research. 47:15pp.
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2011.
High-frequency storm event isotope sampling reveals time-variant transit time distributions and influence of diurnal cycles. Hydrological Processes. 26:308-316.
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2012.
A new approach to simulating stream isotope dynamics using Markov switching autoregressive models. Advances in Water Resources. 46:20-30.
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2012.
Characterization of surface water isotope spatial patterns of Scotland. Journal of Geochemical Exploration. 194:71-80.
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2018.
Liming upland grassland: The effects on earthworm communities and the chemical characteristics of carbon in casts. European Journal of Soil Science. 59:526-531. Abstract
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2008.
Visual assessment of off-shore wind turbines: the influence of distance, contrast, movement and social variables. Renewable Energy. 32(5):814-831.
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2007.
The strong and the hungry: Bias in capture methods for mountain hares Lepus timidus. Wildlife Biology. 17:311-316.
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2011.
Mapping late blight resistance in Solanum microdontum Bitter. Crop Science. 45:340-345. Abstract
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2005.
Clade composition of a plant community indicates its phylogenetic diversity. Ecology and Evolution. 10:3747-3757.
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2020.
Benchmarking plant diversity of Palaearctic grasslands and other open habitats. Journal of Vegetation Science. 32:ArticleNo.e13050.
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2021.
Non-invasive protocol for kinematic monitoring of root growth under infrared light. Bio-protocol. 7:ArticleNo.e2390.
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2017.
3D deformation field in growing plant roots reveals both mechanical and biological responses to axial mechanical forces. Journal of Experimental Botany. 67:5605-5614.
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2016.
Sustaining multifunctional forestry through the developing of social capital and promoting participation: A case of multiethnic mountain communities. Small Scale Forestry Journal. 11:301-319.
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2012.
Exploring institutional changes in agriculture to inform adaptation planning to climate change in transition countries. Mitigation and Adaptation Strategies for Global Change. 20:1385-1406.
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2015.
Exploring institutional changes in agriculture to inform adaptation planning to climate change in transition countries. Mitigation and Adaptation Strategies for Global Change. Published online..
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2014.
Climate change adaptation planning in agriculture: processes, experiences and lessons learned from early adapters. Mitigation and Adaptation Strategies for Global Change. 19:411-430.
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2014.
Global change and the world's mountains: research needs and emerging themes for sustainable development. A synthesis from the 2010 Perth II conference. Mountain Research and Development. 32:S47-S54.
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2012.
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2011.
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2016.
Faba bean as a novel brewing adjunct: Consumer evaluation. Journal of the Institute of Brewing. 125:310-314.
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2019.
Utilization of low nitrogen barley for production of distilling quality malt. Journal of the American Society of Brewing Chemists. 79:26-32.
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2021.
Utilization of low nitrogen barley for production of distilling quality malt. Journal of the American Society of Brewing Chemists.
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2020.
Optimised processing of faba bean (Vicia faba L.) kernels as a brewing adjunct. Journal of the Institute of Brewing. 127:13-20.
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2021.
Evaluating stakeholder involvement in river basin planning: a Scottish case study. Water Policy. 9(5):493-512.
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2007.
Between a rock and a hard place: incompatible objectives at the heart of river basin planning? Water Science and Technology. 59(3):425-431.
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2009.
Policy instruments for environmental public goods: interdependencies and hybridity. Land Use Policy. 104:ArticleNo.104709.
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2021.
Developing and applying a framework to evaluate participatory research for sustainability. Ecological Economics. 60(4):726-742.
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2007.
Hybridity of representation: insights from river basin management planning in Scotland. Environment and Planning C: Government and Society. 32:549-566.
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2014.
Operationalising sustainability science for a sustainability directive? Reflecting on three pilot projects Geographical Journal. 173(4):343-357.
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2007.
Co-researching the Cairngorms: supporting the aims of, not just researching in, the Cairngorms National Park. Scottish Geographical Journal.. 127:40-60.
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2011.
Measuring responsibility: an appraisal of a Scottish National Park's sustainable tourism indicators. Journal of Sustainable Tourism. 16(3):276-297.
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2008.
Linking process to outcomes - internal and external criteria for a stakeholder involvement in River Basin Management Planning. Ecological Economics. 77:113-122.
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2012.
Governing the Cairngorms National Park - revisiting the neglected concept of authority. Journal of Rural Studies. 52:12-20.
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2017.
Understanding and influencing behaviour change by farmers to improve water quality. The Science of the Total Environment. Published online. 408(23):5631-5638.
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2010.
Climate proofing Scottish River Basin Planning: A future challenge. Environmental Policy and Governance. 19(6):374-387.
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2009.
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2015.
Seaweed fertilisation impacts the chemical and isotopic composition of barley: Implications for analyses of archaeological skeletal remains. Journal of Archaeological Science. 104:34-44.
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2019.
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2008.
Influence of temperature on the life-cycle of Globodera spp. Communications in Agricultural and Applied Biological Sciences. 76:307-310.
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2011.
Achievements in and future prospects for molecular diagnostics for plant-parasitic nematodes. Canadian Journal of Plant Pathology. 27:176-185. Abstract
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2005.
Biological characterisation of Globodera pallida from Idaho. Nematology. 14:817-826.
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2012.
Genomics analysis in the potato cyst nematode Globodera pallida. Phytopathology. 96:S149-S149.
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2006.
Negative effects of the sea lice therapeutant emamectin benzoate at low concentrations on benthic communities around Scottish fish farms. Science of the Total Environment. 669:91-102.
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2019.
Twenty three unsolved problems in hydrology (UPH) - a community perspective. Hydrological Sciences Journal.. 64:1141-1158.
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2019.
Mutagenesis and functional characterisation of the RNA and protein components of the toxIN abortive infection and toxin-antitoxin locus of Erwinia. Journal of Bacteriology. 191:6029-6039.
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2009.
Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.
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2010.
Observations on the epidemiology and interactions between myxomatosis, coccidiosis and helminth parasites in a wild rabbit population in Scotland. European Journal of Wildlife Research. 59:557-562.
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2013.
A spatio-temporal analysis of a New Zealand flatworm (Arthurdendyus triangulatus) population in western Scotland. Annals of Applied Biology. 147:81-88. Abstract
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2005.
The effect of starvation on the planarian Arthurdendyus triangulatus (Tricladida: Terricola) as measured by stable isotopes. Biology and Fertility of Soils. 43:267-270. Abstract
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2006.
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2012.
Berry polyphenols inhibit digestive enzymes: a source of potential health benefits? Food Digestion. 3:1-7.
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2012.
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2009.
ClassII peroxidase-encoding genes are present in a phylogenetically wide range of ectomycorrhizal fungi. ISME Journal. 3(12):1387-1395.
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2009.
Working at the science-policy interface. Veterinary Record. 174:165-167.
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2014.
Scenario planning: The future of the cattle and sheep industries in Scotland and their resiliency to disease. Preventive Veterinary Medicine. 121:353-364.
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2015.
A hybrid BAC physical map of potato: a framework for sequencing a heterozygous genome. BMC Genomics. 12:ArticleNo.594..
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2011.
Virus-host interactions during movement processes. Plant Physiology. 138:1815-1821. Abstract
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2005.
Exchanging missives and missiles: the roles of extracellular vesicles in plant-pathogen interactions. Journal of Experimental Botany. 68:5411-5414.
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2017.
A Phytophthora infestans RXLR effector targets plant PP1c isoforms that promote late blight disease. Nature Communications. 7
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2016.
Oomycetes seek help from the plant: Phytophthora infestans effectors target host susceptibility factors. Molecular Plant. 9:636-638.
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2016.
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2014.
Modelling rotations: can crop sequences explain arable weed seedbank abundance? Weed Research. 51:422-432.
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2011.
Statistical models to evaluate invertebrate-plant trophic interactions in arable systems. Bulletin of Entomological Research. 97:265-280. Abstract
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2007.
Effects on weed and invertebrate abundance and diversity of herbicide management in genetically modified herbicide-tolerant winter-sown oilseed rape. Proceedings of the Royal Society of London, Series B. 272:463-474. Abstract
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2005.
A qualitative multi-attribute model for assessing the impact of cropping systems on soil quality. Pedobiologia. 51:239-250. Abstract
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2007.
A qualitative multi-attribute model for economic and ecological assessment of genetically modified crops. Ecological Modelling. 215:247-261. Abstract
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2008.
Mind the gap-deficits in our knowledge of aspects impacting the bioavailability of phytochemicals and their metabolites - a position paper focusing on carotenoids and polyphenols. Molecular Nutrition and Food Research. 59:1307-1323.
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2015.
Interaction between root hairs and soil phosphorus on rhizosphere priming of soil organic matter. Soil Biology and Biochemistry. 135:264-266.
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2019.
Silicon uptake and localisation in date palm (Phoenix dactylifera) - a unique association with sclerenchyma. Frontiers in Plant Science. 10:ArticleNo.988..
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2019.
Challenges of reducing phosphorus based water eutrophication in the agricultural landscapes of Northwest Europe. Frontiers in Marine Science. 5:ArticleNo.276.
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2018.
Potential of thermal imaging in soil bioengineering to assess plant ability for soil water removal and air cooling. Ecological Engineering. 141:ArticleNo.105599.
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2019.
Correlating hydrologic reinforcement of vegetated soil with plant traits during establishment of woody perennials. Plant and Soil. 416:437-451.
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2017.
Root biomechanical properties during establishment of woody perennials. Ecological Engineering. Published online..
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2017.
Effects of root dehydration on biomechanical properties of woody roots of Ulex europaeus. Plant and Soil. 431:347-369.
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2018.
Hydrologic reinforcement induced by contrasting woody species during summer and winter. Plant and Soil. 427:369-390.
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2018.
FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation. Journal of Biomedical Semantics. 7
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2016.
Temperature sensitivity of substrate-use efficiency can result from altered microbial physiology without change to community composition. Soil Biology and Biochemistry. 109:59-69.
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2017.
Endemic Mimosa species from Mexico prefer alphaproteobacterial rhizobial symbionts. New Phytologist. 209:319-333.
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2016.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19(1):44-52.
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2010.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19:44-52.
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2010.
Developing a standard approach for monitoring freshwater pearl mussel (Margaritifera margaritifera) populations in European rivers. Aquatic Conservation: Marine and Freshwater Ecosystems. Published online.
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In Press.
Preparing interdisciplinary leadership for a sustainable future. Sustainability Science..
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2020.
Serengeti wildebeest migratory patterns modelled from rainfall and new vegetation growth. Ecology. 87(8):1987-1994.
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2006.
Preferences for coastal and marine conservation in Vietnam: accounting for differences in individual choice set formation. Ecological Economics. 180:ArticleNo.106885.
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2021.
Seasonal dynamics of the soil microbial community: assimilation of old and young carbon sources in a long-term field experiment as revealed by natural C-13 abundance. European Journal of Soil Science. 67:79-89.
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2016.
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2012.
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2006.
Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.
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2010.
How do individuals and groups perceive wetland functioning? Fuzzy cognitive mapping of wetland perceptions in Uganda Land Use Policy. 60:181-196.
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2017.