Publications list
Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.
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2010.
F-actin dynamics in Neurospora crassa. Eukaryotic Cell. 9:547-557.
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2010.
Flapjack - graphical genotype visualization. Bioinformatics. 26:3133-3134.
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2010.
Flavonoid profiling and transcriptome analysis reveals new gene-metabolite correlations in tubers of Solanum tuberosum L. Journal of Experimental Botany. 61:1225-1238.
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2010.
Food security: focus on agriculture. Science. 328:172-173.
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2010.
Functional markers for red raspberry. Journal of the American Society for Horticultural Science. 135:418-427.
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2010.
Generation and characterisation of a scFv against recombinant coat protein of the geminivirus Tomato leaf curl New Delhi virus. Archives of Virology. 155:335-342.
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2010.
Genetic analysis of potassium use efficiency in Brassica oleracea. Annals of Botany. 105:1199-1210.
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2010.
Genetic and environmental effects influencing fruit colour and QTL analysis in raspberry. Theoretical and Applied Genetics. 121:611-627.
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2010.
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2010.
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
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2010.
Genome sequence of the pea aphid Acyrthosiphon pisum. PLOS Biology. 8:-e1000313.
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2010.
Genome-wide association mapping of morphological traits to candidate gene resolution in the un-sequenced barley genome. Proceedings of the National Academy of Sciences, USA. 107:21611-21616.
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2010.
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2010.
Geographic determinants of reported human Campylobacter infections in Scotland. BMC Public Health. 10:-423.
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2010.
Geomicrobiology of eukaryotic microorganisms. Geomicrobiology Journal. 27:491-519.
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2010.
Grasses. Current Biology. 20:R837-R839.
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2010.
HIGS: Host-induced gene silencing in the obligate biotrophic fungal pathogen Blumeria graminis. Plant Cell. 22:3130-3141.
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2010.
Human provenancing based on stable isotope forensic intellgence. Science & Justice. 50:35-36.
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2010.
The hydrological response of heavy clay grassland soils to rainfall in south-west England using . Rapid Communications in Mass Spectrometry. 24:475-482.
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2010.
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2010.
The impact of drought on leaf physiology of Quercus suber L. trees: comparison of an extreme drought event with chronic rainfall reduction. Journal of Experimental Botany. 61:4361-4371.
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2010.
Impact of sulphur fertilisation on crop response to selenium fertilisation. Plant and Soil. 332:31-40.
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2010.
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2010.
Improved characterisation of nod factors and genetically based variation in LysM receptor domains identify amino acids expendable for nod factor recognition in Lotus spp.. Molecular Plant-Microbe Interactions. 23:58-66.
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2010.
Inorganic carbon acquisition by eukaryotic algae: four current questions. Photosynthesis Research. 106:123-134.
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2010.
Insect endosymbionts: manipulators of insect herbivore trophic interactions? Protoplasma. 244:25-51.
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2010.
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2010.
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2010.
The internal domain of hordeivirus movement protein TGB1 forms in vitro filamentous structures.. Biochemistry (Moscow). 75:752-758.
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2010.
Interring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5:451-464.
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2010.
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2010.
Investigating the inhibitory activity of green coffee and cacao bean extract on pancreatic lipase. Nutrition Bulletin. 35:207-212.
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2010.
Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana.. Nucleic Acids Research. 38:265-278.
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2010.
Involvement of the plant nucleolus in virus and viroid infections: Parallels with animal pathosystems. Advances in Virus Research. 77:119-158.
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2010.
Is the growth rate hypothesis applicable to microalgae? Journal of Phycology. 46:1-12.
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2010.
Is vegetation composition or soil chemistry the best predictor of the soil microbe community? Plant and Soil. 333:417-430.
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2010.
Kelp (Laminaria digitata) increases germination and affects rooting and plant vigour in crops and native plants from an arable grassland in the Outer Hebrides, Scotland. Journal of Coastal Conservation. 14:239-247.
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2010.
Long-term datasets in biodiversity research and monitoring: assessing change in ecological communities through time. Trends in Ecology and Evolution. 25:574-582.
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2010.
Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.
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2010.
Managing the ecology of foliar pathogens: ecological tolerance in crops (Review). Annals of Applied Biology. 157:343-359.
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2010.
Mandipropamid targets the cellulose synthase-like PiCesA3 to inhibit cell wall biosynthesis in the oomycete plant pathogen, Phytophthora infestans. Molecular Plant Pathology. 11:227-243.
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2010.
Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
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2010.
Measurement at the field scale of soil . Rapid Communications in Mass Spectrometry. 24:511-518.
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2010.
The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.
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2010.
Metabolome variability in crop plant species - when, where, how much and so what? Regulatory Toxicology and Pharmacology. 58:S54-S61.
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2010.
Metabolomic analysis of the potato tuber life cycle. Metabolomics. 6:274-291.
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2010.
A metabolomic approach to study major metabolite changes during acclimation to limiting CO2 in Chlamydomonas reinhardtii. Plant Physiology. 154:187-196.
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2010.
A metabolomics study of cultivated potato (Solanum tuberosum) groups, Andigena, Phureja, Stenotomum and Tuberosum using gas chromatography-mass spectrometry. Journal of Agricultural and Food Chemistry. 58:1214-1223.
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2010.
A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature. 468:112-116.
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2010.
Micro-evolutionary change in relation to insecticide resistance in the peach-potato aphid, Myzus persicae. Ecological Entomology. 35:131-146.
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2010.
Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.
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2010.
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2010.
Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos. Journal of Theoretical Biology. 262:441-451.
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2010.
Modelling nonstationary gene regulatory processes. Advances in Bioinformatics. :-749848.
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2010.
Modelling the effects of previous infection and re-infection on the costs of bovine viral diarrhoea outbreaks in beef herds. Veterinary Journal. 185:138-143.
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2010.
The molecular network governing nodule organogenesis and infection in the model legume Lotus japonicus. Nature Communications. 1:-10.
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2010.
Movement of newly assimilated 13C carbon in the grass Lolium perenne and its incorporation into rhizosphere microbial DNA. Rapid Communications in Mass Spectrometry. 24:535-540.
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2010.
Multi-environment QTL mapping in blackcurrant (Ribes nigrum L.) using mixed models. Theoretical and Applied Genetics. 121:1483-1488.
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2010.
Multiple evolutionary origins of legume traits leading to extreme rhizobial differentiation. New Phytologist. 187:508-520.
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2010.
The N-terminal domain of PMTV TGB1 movement protein is required for nucleolar localization, microtubule association and long-distance movement. Molecular Plant-Microbe Interactions. 23:1486-1497.
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2010.
NAM-1gene polymorphism and grain protein content in Hordeum. Journal of Plant Physiology. 167:497-501.
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2010.
New phenotyping methods for screening wheat and barley for beneficial responses to water deficit. Journal of Experimental Botany. 61:3499-3507.
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2010.
Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
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2010.
Non-skeletal biomineralisation by eukaryotes: Matters of moment and gravity. Geomicrobiology Journal. 27:572-584.
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2010.
Novel chlamydia-like organisms as cause of bovine abortions, UK. Emerging Infectious Diseases. 16:1323-1324.
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2010.
Pathogenesis, parasitism and mutualism in the trophic space of microbe-plant interactions. Trends in Microbiology. 18:365-373.
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2010.
Phylogenetic relationship of Phytophthora cryptogea Pethybr. & Laff and P. drechsleri Tucker. Fungal Biology. 114:325-339.
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2010.
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2010.
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2010.
The physiological basis of genotypic differences in nitrogen use efficiency in oilseed rape (Brassica napus L.). Field Crops Research. 119:365-373.
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2010.
Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity. EMBO Journal. 29:1149-1161.
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2010.
Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1. Proceedings of the National Academy of Sciences, USA. 107:9909-9914.
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2010.
Phytoplankton in a changing world: Cell size and elemental stoichiometry. Journal of Plankton Research. 32:119-137.
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2010.
PIV as a method for quantifying root cell growth and particle displacement in confocal images. Microscopy Research and Technique. 73:27-36. Abstract
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2010.
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2010.
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2010.
Plant nutrition for sustainable development and global health. Annals of Botany. 105:1073-1080.
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2010.
Plant treatment, pollutant load and soil type effects in the rhizosphere ecology of trace element polluted soils. Ecotoxicology and Environmental Safety. 73:970-981. Abstract
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2010.
Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli. Nucleic Acids Research. 38:3054-3067.
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2010.
Plant-soil feedbacks contribute to an intransitive competitive network that promotes both genetic and species diversity. Journal of Ecology. 99:176-185.
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2010.
Planting density influence on fibrous root reinforcement of soils. Ecological Engineering. 36:276-284. Abstract
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2010.
Plants as reservoirs for human enteric pathogens (Review). CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources. 5, 047:1-11.
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2010.
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2010.
Positive plant microbial interactions. Annals of Applied Biology. 157:317-320.
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2010.
The prevalence of bovine viral diarrhoea virus infection in beef suckler herds in Scotland. Veterinary Journal. 186:226-231.
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2010.
Prevalence of Pasteurella multocida and other respiratory pathogens in the nasal tract of Scottish calves. Veterinary Record. 167:555-560.
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2010.
Profiling of phenols in human faecal water after raspberry supplementation. Journal of Agricultural and Food Chemistry. 58:10389-10395.
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2010.
Protected raspberry production accelerates onset of oviposition by vine weevils (Otiorhynchus sulcatus). Agricultural and Forest Entomology. 12:277-283.
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2010.
Putative household outbreaks of campylobacteriosis typically comprise single MLST genotypes. Epidemiology and Infection. 138:1744-1747.
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2010.
Quantifying rhizosphere particle movement around mutant maize roots using time-lapse imaging and particle image velocimetry. European Journal of Soil Science. 61:926-939.
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2010.
Re-description of Cryptosporidium cuniculus Inman and Takeuchi 1979 (Apicomplexa:Cryptosporidiidae): morphology, biology and phylogeny. International Journal for Parasitology. 40:1539-1548.
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2010.
Recent developments in effector biology of filamentous plant pathogens. Cellular Microbiology. 12:705-715.
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2010.
Regression analysis of spatial data. Ecology Letters. 13:246-264.
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2010.
Regulation of plant gene expression by alternative splicing. Biochemical Society Transactions. 38:667-671.
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2010.
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2010.
Relationships between volatile and non-volatile metabolites and attributes of processed potato flavour. Phytochemistry. 71:1765-1773.
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2010.
Relative importance of seed-tuber and soilborne inoculum in causing black dot disease of potato. Plant Pathology. 59:693-702.
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2010.
Relative quantitative kinetics of interferon-gamma and interleukin-10 mRNA and protein production by activated ovine peripheral blood mononuclear cells. Veterinary Immunology and Immunopathology. 136:34-42.
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2010.
Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.
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2010.
Reproductive performance of asexual clones of the peach-potato aphid (Myzus persicae, Homoptera: Aphididae) colonising Scotland in relation to host plant and field ecology. Bulletin of Entomological Research. 100:451-460.
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2010.
Resilience of microorganisms and aggregation of a sandy calcareous soil to amendment with organic and synthetic fertilizer. Soil Use and Management. 26:149-157.
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2010.
Resistance of simple plant root systems to uplift loads. Canadian Geotechnical Journal. 47:78-95. Abstract
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2010.
The response of organic matter mineralisation to nutrient and substrate additions in subarctic soils. Soil Biology & Biochemistry. 42:92-100.
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2010.
Reversible jump markov chain Monte Carlo methods and segmentation algorithms in hidden Markov models. Australian & New Zealand Journal of Statistics. 52:151-166.
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2010.
The role of 'omics' technologies in food safety assessment. Food Control. 21:1601-1610.
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2010.
Root growth models: Towards a new generation of continuous approaches. Journal of Experimental Botany. 61:2131-2143.
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2010.
Rowanberry phenolics: compositional analysis and bioactivites. Journal of Agricultural and Food Chemistry. 58:11985-11992.
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2010.
The SAFE FOODS framework for improved risk analysis of foods. Food Control. 21:1566-1587.
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2010.
The SAFE FOODS risk analysis framework suitable for GMOs? A case study. Food Control. 21:1662-1676.
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2010.
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research. 38:1767-1771.
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2010.
Sedimentary chemofacies characterization by means of multivariate analysis. Sedimentary Geology. 228:218-228.
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2010.
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2010.
Sequence similarities between Raspberry leaf mottle virus, Raspberry leaf spot virus and the closterovirus Raspberry mottle virus. Annals of Applied Biology. 156:439-448.
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2010.
Shoot zinc (Zn) concentration varies widely within Brassica oleracea L. and is affected by soil Zn and phosphorus (P) levels. Journal of Horticultural Science & Biotechnology. 85:375-380.
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2010.
Signaling in induced resistance. Advances in Virus Research. 76:57-121.
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2010.
Silencing potential of viral-derived RNAi constructs in Tomato leaf curl virus-AC4 gene suppression in tomato. Transgenic Research. 19:45-55.
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2010.
Soil compaction - N interactions in barley: Root growth and tissue composition. Soil and Tillage Research. 106:241-246.
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2010.
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2010.
Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186:755-768.
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2010.
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2010.
The Spen family protein FPA controls alternative cleavage and polyadenylation of RNA. Developmental Cell. 18:203-213.
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2010.
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2010.
Stomatal vs. genome size in angiosperms: The somatic tail wagging the genomic dog? Annals of Botany. 105:573-584.
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2010.
Storm flow and baseflow response to reduced acid deposition - using Bayesian compositional analysis in hydrograph separation with changing end members. Hydrological Processes. 24:2300-2312.
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2010.
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2010.
Sustainable disease control using weeds as indicators: Capsella bursa pastoris and Tobacco Rattle Virus. Weed Research. 50:511-514.
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2010.
Symptom induction and RNA silencing suppression by the cucumber mosaic virus 2b protein. Plant Signaling & Behaviour. 5:705-708.
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2010.
Tablet - next generation sequence assembly visualization. Bioinformatics. 26:401-402.
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2010.
Tobraviruses - plant pathogens and tools for biotechnology (Review). Molecular Plant Pathology. 11:577-583.
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2010.
Towards an understanding of how RxLR-effector proteins are translocated from oomycetes into host cells. Fungal Genetics Reviews. 24:27-36.
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2010.
Tracking the green invaders: advances in imaging virus infection in plants. Biochemical Journal. 430:21-37.
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2010.
Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.
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2010.
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
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2010.
A universal agro-hydrological model for water and nitrogen cycles in the soil-crop system SMCR_N: Critical update and further validation. Agricultural Water Management. 97:1411-1422.
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2010.
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2010.
Variation in acrylamide producing potential in potato: Segregation of the trait in a breeding population. Food Chemistry. 123:568-573.
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2010.
Varied movement strategies employed by triple gene block encoding viruses (Review). Molecular Plant-Microbe Interactions. 23:1231-1247.
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2010.
Vegetation impact on the hydrology of an aeolian sandy soil in a continental climate. Ecohydrology. 3:413-420.
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2010.
What contribution do detergent fatty alcohols make to sewage discharges and the marine environment? Journal of Environmental Monitoring. 12:1846-1856.
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2010.
White and green tea polyphenols inhibit pancreatic lipase in vitro. Food Research International. 43:1537-1544.
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2010.
Whole-genome association mapping in elite inbred crop varieties. Genome. 53:967-972.
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2010.
Why are mycorrhizal fungi and symbiotic nitrogen-fixing bacteria not genetically integrated into plants? Annals of Applied Biology. 157:381-391.
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2010.
Accumulation of potassium, rubidium and caesium (133Cs and 137Cs) in various fractions of soil and fungi in a Swedish forest. The Science of the Total Environment. 408:2543-2548.
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2010.
Additive impacts of nitrogen deposition and grazing on a mountain moss-sedge heath. Botanica Helvetica.. 120(2):129-137.
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2010.
Agro-environmental project duration and effectiveness in South-East Asia. Outlook on Agriculture. 39(2):107-113.
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2010.
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2010.
Analysing visual landscape complexity: theory and application. Landscape Research. 35(1):111-131.
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2010.
Animal conservation and ecosystem services: garnering the support of mightier forces. Animal Conservation. 13(6):523-525.
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2010.
Aqua regia extractable selenium contents of some Scottish topsoils measured by ICP-MS and the relationship with mineral and organic components. Journal of the Science of Food and Agriculture. 90(6):972-980.
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2010.
Archaea in a hyper-arid polar desert. Proceedings of the National Academy of Sciences of the USA.. 107(2):E1-E1.
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2010.
Are richness patterns of common and rare species equally well explained by environmental variables? Ecography. 34(4):529-539.
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2010.
Assessing climate change causes, risks and opportunities in forestry. Outlook on Agriculture. 39(4):263-268.
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2010.
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2010.
Assessing the sustainability of forest management: an application of multi-criteria decision analysis to community forests in northern Ethiopia. Journal of Environmental Management. 91:1294-1304.
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2010.
Assessing the value of high-resolution isotope tracer data in the stepwise development of a lumped conceptual rainfall-runoff model. Hydrological Processes. 24(16):2335-2348.
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2010.
Assessing the vulnerability of blanket peat to climate change using an ensemble of statistical bioclimatic envelope models. Climate Research. 45:131-150.
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2010.
An assessment of the fine sediment dynamics in an upland river system: INCA-Sed modifications and implications for fisheries. The Science of the Total Environment. 408(12):2555-2566.
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2010.
Bioclimatic envelope model of climate change impacts on blanket peatland distribution in Great Britain. Climate Research. 45:151-162.
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2010.
Burkholderia species are ancient symbionts of legumes. Molecular Ecology. 19(1):44-52.
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2010.
Calculating carbon budgets of wind farms on Scottish peatlands. Mires and Peat, Special Volume: Wind Farms on Peatland, 2008-2010. 4(Art. 9):1-23.
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2010.
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2010.
Capturing coastal geomorphological change within regional integrated assessment: an outcome-driven fuzzy logic approach. Journal of Coastal Research. 26(5):831-842.
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2010.
A century of physical geography research in the Annals. Annals of the Association of American Geographers. 100(5):1049-1059.
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2010.
Changes in microbial community structure and function following Sphagnum peatland restoration. Soil Biology and Biochemistry. 42(2):291-301.
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2010.
Climate change and human health: an environmental perspective. Climate Research. 41(1):41-44.
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2010.
Climate information and capacity needs for ecosystem management under a changing climate. Procedia Environmental Sciences. 1:206-227.
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2010.
A comparison of active navigation and passive observation of desktop models of future built environments. Design Studies. 31(5):419-438.
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2010.
A comparison of the isotopic composition of lead in rainwater, surface vegetation and tree bark at the long-term monitoring site, Glensaugh, Scotland in 2007. The Science of the Total Environment. 408(17):3704-3710.
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2010.
Competition indices for predicting the radial growth of Scots pine in spatially heterogeneous forest. Ecological Modelling. 221(13-14):1649-1654.
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2010.
Consequences of feasible future agricultural land use change on soil organic carbon stocks and greenhouse gas emissions in Great Britain. Soil Use and Management. 26(4):381-398.
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2010.
A contextual framework for understanding good practice in integrated catchment management. Journal of Environmental Planning and Management. 53(1):63-89.
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2010.
Converting Australian tropical rainforest to native Araucariaceae plantations alters soil fungal communities. Soil Biology and Biochemistry. 42(1):14-20.
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2010.
Cu and Ni mobility and bioavailability in sequentially conditioned soils. Water, Air and Soil Pollution. 210(1-4):63-73.
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2010.
Culling wildlife hosts to control disease: mountain hares, red grouse and louping ill virus. Journal of Applied Ecology. 46(4):926-930.
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2010.
Degradation of metalaxyl M in contrasting soils is influenced more by differences in physicochemical characteristics than in microbial community composition after reinoculation of sterilised soils. Soil Biology and Biochemistry.. 42(7):1123-1131.
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2010.
Degradation of yew, ragwort and rhododendron toxins during composting. The Science of the Total Environment. 408(19):3128-4137.
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2010.
Detection of nitrogen deficiency in potato plants using gene expression markers. American Journal of Potato Research. 87(1):50-59.
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2010.
Developing greenhouse gas marginal abatement cost curves for agricultural emissions from crops and soils in the UK. Agricultural Systems. 103(4):198-209.
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2010.
Differences and commonalities in physical, chemical and mineralogical properties of Zanzibari geophagic soils. Journal of Chemical Ecology.. 36(1):129-140.
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2010.
Differentiating farmers: opening the black box of private farming in post-Soviet states. Agriculture and Human Values. 27(3):259-276.
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2010.
Differentiating outdoor recreation: evidence drawn from national surveys in Scotland. Journal of Policy Research in Tourism, Leisure and Events. 2(1):29-50.
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2010.
Distribution of mountain hares (Lepus timidus) in Scotland: results from a questionnaire. Mammal Review. 40(4):313-326.
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2010.
Does grassland vegetation drive soil microbial diversity? Nutrient Cycling in Agro-Ecosystems. 88(2):147-158.
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2010.
Drug discovery from uncultivable microorganisms. Drug Discovery Today. 15(17-18):792-799.
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2010.
The ecological engineering impact of a single tree species on the soil microbial community. Journal of Ecology. 98(1):50-61.
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2010.
The effect of local cultural context on the success of community-based conservation interventions. Conservation Biology. Published online. 24(4):1119-1129.
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2010.
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2010.
Effects of environmental pollutants on the reproduction and welfare of ruminants. Animal. 4(7):1227-1239.
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2010.
Effects of mowing utilization on forage yield and quality in five oat varieties in alpine area of the eastern Qinghai-Tibetan Plateau. African Journal of Biotechnology. 9(4):461-466.
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2010.
The enigma of soil animal species diversity revisited: the role of small-scale heterogeneity. PLoS ONE. 5(7):e11567.
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2010.
Environmental grants and regulations in strategic farm business decision-making: A case study of attitudinal behaviour in Scotland. Land Use Policy, Special Issue: SI. 27(2):415-423.
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2010.
Environmental myopia: a diagnosis and a remedy. Trends in Ecology and Evolution. 25(10):556-561.
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2010.
Estimating changes in Scottish soil carbon stocks using ECOSSE. I. Model description and uncertainties. Climate Research. 45:179-192.
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2010.
Estimating changes in Scottish soil carbon stocks using ECOSSE. II. Application. Climate Research. 45:179-192.
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2010.
Experimental evidence for herbivore limitation of the treeline. Ecology. 91(11):3414-3420.
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2010.
Exploring microbial diversity for biotechnology: the way forward. Trends in Biotechnology. 28(3):111-116.
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2010.
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2010.
Foetal hypothalamic and pituitary expression of GnRH and galanin systems is disturbed by exposure to sewage sludge chemicals via maternal ingestion. Journal of Neuroendocrinology. 22(6):527-533.
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2010.
Framing the landscape: Discourses of woodland restoration and moorland management in Scotland. Journal of Rural Studies. 26:185-195.
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2010.