Publications list
A functional assessment of the response of grassland vegetation to reduced grazing and abandonment. Journal of Vegetation Science.. 21(4):683-694.
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2010.
The functional response of a generalist predator. PLoS ONE. 5(5):e10761.
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2010.
The future of the uplands. Land Use Policy.. Suppl.1:S204-S216.
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2010.
Genetic variation and molecular evolution of endangered Kozlov's pika (Ochotona Koslowi Buchner) based on mitochondrial cytochrome B gene. Polish Journal of Ecology. 58(3):563-568.
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2010.
Geographical perspectives on climate change. Annals of the Association of American Geographers. 100(4):715-718.
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2010.
Geophagy and potential health implications: geohelminths, microbes and heavy metals. Transactions of the Royal Society of Tropical Medicine and Hygiene. 104(12):787-795.
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2010.
Getting the timing right: antler growth phenology and sexual selection in a wild red deer population. Oecologia. 164:357-368.
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2010.
Grazing across grass: shrub boundaries: Can spatial heterogeneity increase resistance? Agriculture, Ecosystems and Environment. 139(1-2):159-166.
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2010.
How important is plot relocation accuracy when interpreting re-visitation studies of vegetation change? Plant Ecology and Diversity. 3(1):1-8.
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2010.
How old is the streamwater? Open questions in catchment transit time conceptualization, modelling and analysis Hydrological Processes. 24(12):1745-1754.
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2010.
Hydrological connectivity and microbiological fluxes in montane catchments: the role of seasonality and climatic variability. Hydrological Processes. 24(9):1231-1235.
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2010.
The identification of priority opportunities for UK nature conservation policy. Journal of Applied Ecology. 47(5):955-965.
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2010.
Identifying conflicts and opportunities for collaboration in the management of a wildlife resource: a mixed-methods approach. Wildlife Research. 37(8):647-657.
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2010.
Impacts of extensive grazing and abandonment on grassland soils and productivity. Agriculture, Ecosystems and Environment. 139:476-482.
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2010.
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2010.
Impacts of residence time during storage on potential of water saving for grey water recycling system. Water Research. 44(1):267-277.
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2010.
In situ degradation characteristics as predictors of in vivo digestibility and metabolizable energy values of forages and wheat straw. Journal of Applied Animal Research. 37(1):77-81.
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2010.
Inferring networks from multivariate symbolic time series to unravel behavioural interactions among animals. Animal Behaviour. 79(2):351-359.
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2010.
Inferring species interaction networks from species abundance data: A comparative evaluation of various statistical and machine learning methods. Ecological Informatics. 5(6):451-464.
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2010.
Influence of prenatal nutrition and obesity on tissue specific fat mass and obesity-associated (FTO) gene expression. Reproduction. 139(1):265-274.
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2010.
Influence of riparian cover on stream temperatures and the growth of the mayfly Baetis rhodani in an upland stream. Aquatic Ecology. 44(4):669-678.
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2010.
Influence of sward structure on daily intake and foraging behaviour by horses. Animal. 4(3):480-485.
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2010.
The influence of vegetation type, soil properties and precipitation on the composition of soil mite and microbial communities at the landscape scale. Journal of Biogeography. 37(7):1317-1328.
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2010.
The influence of weathering and organic matter on heavy metals lability in silicatic, Alpine soils. The Science of the Total Environment.. 408(4):931-946.
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2010.
Insurance, prevention or just wait and see? Public preferences for water management strategies in the context of climate change Ecological Economics. 69(11):2279-2291.
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2010.
Integrating soil quality changes to arable agricultural systems following organic matter addition, or adoption of a ley-arable rotation. Applied Soil Ecology. 46(1):43-53.
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2010.
Integrating water and agricultural management under climate change. The Science of the Total Environment. 408(23):5619-5622.
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2010.
Integrative management to mitigate diffuse pollution in multi-functional landscapes. Current Opinions in Environmental Sustainability. 2(5-6):375-382.
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2010.
Interactions among agricultural production and other ecosystem services delivered from European temperate grassland systems. Advances in Agronomy. 109:117-154.
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2010.
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2010.
Intraspecific diversity regulates fungal productivity and respiration. PLoS ONE. 5(9):e12604.
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2010.
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2010.
Is vegetation composition or soil chemistry the best predictor of the soil microbial community? Plant and Soil. 333(1-2):417-430.
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2010.
Landscape-scale control of carbon budget of Lake Simcoe: A process-based modelling approach. International Journal of Great Lakes Research. Published online..
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2010.
Lifetime exposure to arsenic in residential drinking water in Central Europe. International Archives of Occupational and Environmental Health. 83(5):471-481.
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2010.
Linking monitoring and modelling: can long-term datasets be used more effectively as a basis for large-scale prediction? Biogeochemistry. 101(1-3):211-227.
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2010.
LINTUL3, a simulation model for nitrogen-limited situations: applications to rice. European Journal of Agronomy. 32(4):255-271.
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2010.
Livestock predation in the Bale Mountains, Ethiopia. African Journal of Ecology. 48(4):1076-1082.
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2010.
Local and regional partnerships in natural resource management: The challenge of bridging institutional levels. Environmental Management. 46(5):711-724.
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2010.
Long-term drainage for forestry inhibits extracellular phenol oxidase activity in Finnish boreal mire peat. European Journal of Soil Science. 61(6):950-957.
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2010.
Maternal and fetal tissue accumulation of selected endocrine disrupting compounds (EDC) following exposure to sewage sludge-treated pastures before or after conception. Journal of Environmental Monitoring. 12:1582-1593.
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2010.
Measurement of soil characteristics for forensic applications. Surface and Interface Analysis. 42(5):363-377.
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2010.
Microorganisms and climate change: terrestrial feedbacks and mitigation options. Nature Reviews Microbiology. 8(11):779-790.
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2010.
Moving together: Incidental leaders and naive followers. Behavioural Processes. 83(3):225-241.
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2010.
Multi-locus sequence types of Campylobacter carried by flies and slugs acquired from local ruminant faeces. Journal of Applied Microbiology. 109(3):829-838.
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2010.
Nesting preferences of the threatened wood ant Formica exsecta (Hymenoptera: Formicidae): implications for conservation in Scotland. Journal of Insect Conservation.. 14(3):269-276.
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2010.
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2010.
Nitrogen storage and remobilization by trees: ecophysiological relevance in a changing world. Tree Physiology. 30(9):1083-1095.
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2010.
Nodulation and nitrogen fixation by mimosa spp. In the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186(4):934-946.
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2010.
The non-market value of reclaimed waste water for use in agriculture: a contingent valuation approach. Spanish Journal of Agricultural Research. 8(S2):187-196.
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2010.
Novel environment exploration and home range size in starlings Sturnus vulgaris. Behavioral Ecology. 21(6):1321-1329.
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2010.
The ODD protocol for describing individual-based and agent-based models: A first update. Ecological Modelling. 221(23):2760-2768.
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2010.
ODD updated. Journal of Artificial Societies and Social Simulation.. 13(4):9.
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2010.
On the role of ideas of human nature in shaping attitudes towards environmental governance. Human Ecology. 38(1):123.-135.
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2010.
Open-system chemical behavior in deep Wilcox Group mudstones, Texas Gulf. Marine and Petroleum Geology.. 27(9):1804-1818.
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2010.
Palatability mapping: a koala's eye view of spatial variation in habitat quality. Ecology. 91(11):3165-3176.
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2010.
Participatory wildlife surveys in communal lands: a case study from Simanjiro, Tanzania. African Journal of Ecology. 8(3):727-735.
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2010.
Peat, water and plant tissue chemistry monitoring: A seven-year case-study in a restored peatland. Wetlands. 30(1):159-170.
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2010.
Personality and collective decision-making in foraging herbivores. Proceedings of the Royal Society of London, B. 277(1684):1093-1099.
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2010.
Phenotypic correlates of hybridisation between red and sika deer (genus Cervus). Journal of Animal Ecology. 79(2):414-425.
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2010.
Plant genotypic diversity does not beget root-fungal species diversity. Plant and Soil. 336(1-2):107-111.
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2010.
PLE and GC-MS determination of polybrominated diphenyl ethers in soils. Chromatographia. 72(7-8):535-543.
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2010.
Population and individual level effects of over-winter supplementary feeding mountain hares. Journal of Zoology. 282(3):214-220.
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2010.
Population resequencing reveals local adaptation of Arabidopsis lyrata to serpentine soils. Nature Genetics. 42:260-U42.
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2010.
Pregnant ewes exposed to multiple endocrine disrupting pollutants through sewage sludge-fertilised pasture show an anti-estrogenic effect in their trabecular bone. The Science of the Total Environment. 408:2340-2346.
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2010.
The present is the key to the past, but what does the future hold for the recovery of surface waters from acidification? Water Research. 44(10):3166-3180.
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2010.
Process-based principles for restoring river ecosystems. BioScience. 60(3):209-222.
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2010.
Quantification of effects of season and nitrogen supply on tree belowground carbon transfer. New Phytologist. 187(2):485-493.
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2010.
Quantifying the contribution of soil organic matter turnover to forest soil respiration using natural abundance delta 13C. Soil Biology and Biochemistry. 42(6):935-943.
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2010.
Quantifying uptake rate of potassium from soil in a long-term gras rotation experiment. Plant and Soil. 335(1-2):3-19.
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2010.
Raising the bar? The challenge of evaluating the outcomes of environmental modelling and software Environmental Modelling and Software. 26(3):247-257.
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2010.
Regeneration of Salix arbuscula and Salix lapponum within a large mammal exclosure: the impacts of microsite and herbivory. Restoration Ecology. 18(Suppl. 1):1-9.
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2010.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
Remobilization of acorn nitrogen for seedling growth in holm oak (Quercus ilex), cultivated with contrasting nutrient availability. Tree Physiology.. 30(2):257-263.
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2010.
Repeated application of diluted olive mill wastewater induces changes in the structure of the soil microbial community. European Journal of Soil Biology. 46(1):34-40.
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2010.
Reply to comment on 'Multi-element' signatures of stream sediments and their sources under moderate to low flow conditions. Applied Geochemistry. 25(10):1617-1619.
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2010.
Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.
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2010.
The response of organic matter mineralisation to nutrient and substrate additions in sub-arctic soils. Soil Biology and Biochemistry. 42(1):92-100.
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2010.
Responses of plant traits of four grasses from contrasting habitats to defoliation and N supply. Nutrient Cycling in Agroecosystems. 88(2):245-258.
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2010.
Revealing ecological networks using Bayesian network inference algorithms. Ecology. 91(7):1892-1899.
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2010.
Riffle-pool maintenance and flow convergence routing confirmed on a large gravel bed river. Geomorphology. 114(3):143-160.
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2010.
The risk of peat erosion from climate change: land management combinations: an assessment with bayesian belief networks. Human and Ecological Risk Assessment. 16(5):962-976.
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2010.
River phosphorus cycling: separating biotic and abiotic uptake during short-term changes in sewage effluent loading. Water Research.. 44(15):4425-4436.
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2010.
Rock building fungi. Geomicrobiology Journal. 27(6-7):624-629.
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2010.
The role of deer as vehicles to move ticks, Ixodes ricinus, between contrasting habitats. International Journal for Parasitology. 40(9):1013-1020.
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2010.
Root-shoot growth responses during interspecific competition quantified using allometric modelling. Annals of Botany. 106(6):921-926.
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2010.
Sentinel systems on the razor's edge: effects of warming on Arctic geothermal stream ecosystems. Global Change Biology. 16(7):1979-1991.
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2010.
Sexual selection for fighting skills as a driver of sexual segregation in polygynous ungulates: an evolutionary model. Animal Behaviour. 80(4):745-755.
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2010.
Simulation scenarios of spatio-temporal arrangement of crops at the landscape scale. Environmental Modelling and Software. 25(12):1881-1889.
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2010.
Size matters: large-scale replications of experiments with FEARLUS. Advances in Complex Systems. 13(4):453-467.
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2010.
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2010.
Soil carbon balance of rice-based cropping systems of the Indo-Gangetic Plains. Geoderma. 160:143-154.
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2010.
Spatial and temporal ecology of Scots pine ectomycorrhizas. New Phytologist. 186(3):755-768.
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2010.
Stakeholder attitudes to multi-functional forests in Europe. Forests, Trees and Livelihoods. 19(4):341-358.
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2010.
State dependent dynamics of cycles in red grouse abundance. Ecography. 33(5):896-905.
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2010.
Substrate requirements of spawning Chinook salmon (Oncorhynchus tshawytscha) are dependent on local channel hydraulics. River Research and Applications. 26(4):456-468.
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2010.
Technical assessment and evaluation of environmental models and software: Letter to the Editor. Environmental Modelling and Software. 26(3):328-336.
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2010.
Tenancy in Norwegian agriculture. Land Use Policy. 27(3):946-956.
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2010.
Terricolous alpine lichens are sensitive to both load and concentration of applied nitrogen and have potential as bioindicators of nitrogen deposition. Environmental Pollution. 158(5):1296-1302.
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2010.
The threatened plant intermediate wintergreen (Pyrola media Sw.) associates with a wide range of biotrophic fungi in native Scottish pine woods. Biodiversity and Conservation. 19(14):3963-3971.
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2010.
Towards a mechanistic understanding of dispersal evolution in plants: conservation implications. Diversity and Distributions. 16(4):690-702.
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2010.
Towards a more exact definition of the importance of competition - a reply to Freckleton et al. (2009). Journal of Ecology. 98(4):719-724.
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2010.
Towards a simple dynamic process conceptualization in rainfall runoff models using multi-criteria calibration and tracers in temperate, upland catchments. Hydrological Processes.. 24(3):260-275.
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2010.
Transit time distributions of a conceptual model: their characteristics and sensitivities. Hydrological Processes. 24(12):1719-1729.
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2010.
Turnover of labile and recalcitrant soil carbon differ in response to nitrate and ammonium deposition in an ombrotrophic peatland. Global Change Biology. 16(8):2307-2321.
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2010.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
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2010.
Uncertainty evaluation of mass discharge estimates from a contaminated site using a fully Bayesian framework. Water Resources Research. 46(W12552)
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2010.
Understanding and influencing behaviour change by farmers to improve water quality. The Science of the Total Environment. Published online. 408(23):5631-5638.
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2010.
Understanding the cognitive basis for human-wildlife relationships. International Journal of Sociology. 40:104-123.
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2010.
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2010.
The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.
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2010.
Using PIT tag technology to target supplementary feeding studies. Wildlife Biology. 15(4):405-411.
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2010.
Using qualitative evidence to enhance an agent-based modelling system for studying land use change. Journal of Artificial Societies and Social Simulation.. 13(2)
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2010.
Validation of biophysical models: issues and methodologies. A review. Agronomy for Sustainable Development.. 30(1):109-130.
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2010.
Validation of biophysical models: issues and methodologies: a review. In: Sustainable Farming Systems, Springer Sciencce. 30:109-130.
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2010.
Valley width controls on riffle location and persistence on a gravel bed river. Geomorphology. 121(3-4):206-221.
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2010.
Variable extent of sex-biased dispersal in a strongly polygynous mammal. Molecular Ecology. 19(15):3101-3113.
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2010.
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2010.
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2010.
The 172 kb genomic DNA region of the O. rufipogon ylg1.1 locus: comparative sequence analysis with O. sativa ssp. japonica and O. sativa ssp. indica. Functional & Integrative Genomics. 9:97-108.
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2009.
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2009.
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2009.
Allometry and stoichiometry of unicellular, colonial and multicellular phytoplankton. New Phytologist. 181:295-309.
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2009.
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2009.
Arabidopsis RNA immunoprecipitation. Plant Journal. 59:163-168.
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2009.
Bacterial chemoattraction towards jasmonate plays a role in the entry of Dickeya dadantii through wounded tissues. Molecular Microbiology. 74:662-671.
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2009.
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2009.
Berry polyphenols inhbit pancreatic lipase actvity in vitro. Food Chemistry. 115:193-199. Abstract
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2009.
Biochemical properties and biodegradation of dissolved organic matter from soils. Biology and Fertility of Soils. 45:733-742. Abstract
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2009.
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2009.
Biological approaches to global environmental change: mitigation and remediation. Current Biology. 19:R615-R623.
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2009.
Biological nitrification inhibition (BNI) - Is there potential for genetic interventions in Triticeae? Breeding Science. 59:529-545.
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2009.
Biology of the European large raspberry aphid (Amphorophora idaei); its role in virus transmission and resistance breakdown in red raspberry. Agricultural and Forest Entomology. 11:61-71. Abstract
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2009.
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2009.
Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics. 25:1422-1423.
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2009.
A brief outline of the development of plant virology in the 20th century. Journal of Plant Pathology. 91:509-520.
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2009.
The C-terminus of the Polerovirus P5 readthrough domain limits virus infection to the phloem. Journal of Virology. 83:5419-5429. Abstract
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2009.
The carbon footprints of food crop production. International Journal of Agicultural Sustainability. 7:107-118.
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2009.
CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology. 131:105-109.
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2009.
Centrifuge modelling of climatic effects on clay embankments. Proceedings of the Institution of Civil Engineers - Engineering Sustainability. 162:91-100.
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2009.
Characterisation of a novel air-liquid interface biofilm of Pseudomonas fluorescens SBW25. Microbiology. 155:1397-1406.
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2009.
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2009.
Climate change effects on physiology and population processes of hosts and vectors that influence the spread of hemipteran-borne plant viruses. Global Change Biology. 15:1884-1894.
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2009.
Common determinants of body size and eye size in chickens from an advanced intercross line. Experimental Eye Research. 89:42-48.
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2009.
Comparative sequence analysis and serological and infectivity studies indicate that cocksfoot mild mosaic virus is a member of the genus Panicovirus. Archives of Virology. 154:1545-1549.
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2009.
Comparative transcriptomics in the Triticeae. BMC Genomics. 10:-285. Abstract
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2009.
Comparison of genome sequence of PVY isolates with biological properties. American Journal of Potato Research. 86:227-238.
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2009.
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2009.
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2009.
Cryptic photosynthesis - extrasolar planetary oxygen without a surface biological signature. Astrobiology. 9:623-636.
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2009.
Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies. Environmental Science and Pollution Research. 16:85-94. Abstract
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2009.
Darwin - a mission to detect and search for life on extrasolar planets. Astrobiology. 9:1-22.
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2009.
Deep rooting and drought screening of cereal crops: A novel field-based method and its application.. Field Crops Research. 112:165-171. Abstract
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2009.
Deployment of diversity for enhanced crop function. Annals of Applied Biology. 154:309-322. Abstract
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2009.
Depolarisation-activated calcium channels shape the calcium signatures induced by low-temperature stress. New Phytologist. 183:6-8.
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2009.
Desirable plant root traits for protecting natural and engineered slopes against landslides (Invited review). Plant and Soil. 324:1-30.
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2009.
Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics. 10:-582.
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2009.
Development and mapping of DArT markers within the Festuca - Lolium complex. BMC Genomics. 10:-473.
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2009.
The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae). Theoretical and Applied Genetics. 118:205-211. Abstract
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2009.
The development of immune responses in Balb/c mice following inoculation with attenuated or virulent Neospora caninum tachyzoites. Parasite Immunology. 31:392-401.
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2009.
Differential effect of arbuscular mycorrhizal fungal communities from ecosystems along management gradient on the growth of forest understorey plant species. Soil Biology & Biochemistry. 41:2141-2146.
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2009.
Disentangling the impact of AM fungi versus roots on soil structure and water transport. Plant and Soil. 314:183-196. Abstract
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2009.
Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.
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2009.
Domain organization of the N-terminal portion of hordeivirus movement protein TGBp1. Journal of General Virology. 90:3022-3032.
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2009.
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2009.
Earthworms bring compacted and loose soils to a similar mechanical state. Soil Biology & Biochemistry. 41:656-658. Abstract
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2009.
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2009.
Ecosystem feedbacks and cascade processes: understanding their role in the responses of Arctic and alpine ecosystems to environmental change. Global Change Biology. 15:1153-1172. Abstract
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2009.
Ectopic 5' splice sites inhibit gene expression by engaging RNA surveillance and silencing pathways in plants. Plant Physiology. 151:955-965.
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2009.
The effect of earthworms and liming on soil microbial communities. Biology and Fertility of Soils. 45:361-369. Abstract
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2009.
Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. British Journal of Nutrition. 101:541-550.
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2009.
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2009.
The effect of perceived environmental background on qualitative assessments of pig behaviour. Animal Behaviour. 78:477-484.
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2009.
The effects of dwarfing genes on seedling root growth of wheat. Journal of Experimental Botany. 60:2565-2573.
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2009.
The effects of host age on follicular dendritic cell status dramatically impair scrapie agent neuroinvasion in aged mice. Journal of Immunology. 183:5199-5207.
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2009.
The effects of uneven patchy cultivar mixtures on disease control and yield in winter barley. Field Crops Research. 110:225-228. Abstract
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2009.
Efficiency of functional regression estimators for combining multiple laser scans of cDNA microarrays. Biometrical Journal. 51:45-55.
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2009.
The emergence of whole genome association scans in barley. Current Opinion in Plant Biology. 12:218-222.
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2009.
Environmental and seasonal influences on red raspberry anthocyanin antioxidant contents and identification of quantitative traits loci (QTL). Molecular Nutrition and Food Research. 53:625-634. Abstract
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2009.
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2009.
Estimating the annual number of breeding attempts from breeding dates using mixture models. Ecology Letters. 12:1184-1193.
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2009.
Evaluating soil stabilisation by biological processes using step-wise aggregate fractionation. Soil and Tillage Research. 102:209-215.
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2009.
Evidence and evolutionary analysis of ancient whole-genome duplication in barley predating the divergence from rice. BMC Evolutionary Biology. 9:-209.
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2009.
Exploiting knowledge of R/Avr genes to rapidly clone a new LZ-NBS-LRR family of late blight resistance genes from potato linkage group IV. Molecular Plant-Microbe Interactions. 22:630-641.
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2009.
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2009.
Failure to transmit scrapie infection by transferring preimplantation embryos from naturally infected donor sheep. Theriogenology. 72:809-816.
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2009.
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2009.
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2009.
A fully recombinant ELISA using in vivo biotinylated antibody fragments for the detection of Potato leaf roll virus. Journal of Virological Methods. 159:200-205.
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2009.
Functional approaches for assessing plant and invertebrate abundance patterns in arable systems. Basic and Applied Ecology. 10:34-42. Abstract
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2009.
Functional evolution of photochemical energy transformations in oxygen-producing organisms. Functional Plant Biology. 36:505-515.
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2009.
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2009.
A genetic perspective on yield plateau in potato (Review). Potato Journal (Indian). 36:79-94.
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2009.
Genome activation by Raspberry bushy dwarf virus coat protein. Journal of General Virology. 90:747-753.
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2009.
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans. Nature. 461:393-398.
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2009.
A graphical method for dating chicks using bivariate body measurements. Journal of Agricultural, Biological and Environmental Statistics. 14:443-451.
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2009.
Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnology and Oceanography. 54:823-836.
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2009.
Horsetails get the wind up. New Phytologist. 184:6-9.
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2009.
How might we model an ecosystem? Ecological Modelling. 220:1935-1949.
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2009.