Publications list
Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere. Biology and Fertility of Soils. 44:897-901. Abstract
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2008.
Tissue disruption activates a plant caspase-like protease with TATD cleavage specificity. Plant Stress. 2:89-95. Abstract
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2008.
Tissue nutrient concentrations in aquatic macrophytes: comparison across biophysical zones, surface water habitats and plant life forms. Chemistry and Ecology. 24(6):413-422.
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2008.
Tissue nutrient concentrations in freshwater aquatic macrophytes: high inter-taxon differences and low phenotypic response to nutrient supply. Freshwater Biology. 52(22):2073-2086.
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2007.
Tissue-dependent limited pleiotropy affects gene expression in barley. Plant Journal. 56:287-296.
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2008.
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2014.
To graze or not to graze? Sheep, voles, forestry and nature conservation in the British uplands Journal of Applied Ecology. 43(3):499-505.
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2006.
Tobraviruses - plant pathogens and tools for biotechnology (Review). Molecular Plant Pathology. 11:577-583.
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2010.
Tolerance in banana to Fusarium wilt is associated with early up-regulation of cell wall-strengthening genes in the roots. Molecular Plant Pathology. 8:333-341. Abstract
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2007.
The tomato genome sequence provides insights into fleshy fruit evolution. Nature. 485:635-641.
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2012.
The tomato sequencing project, the first cornerstone of the international Solanaceae project (SOL). Comparative and Functional Genomics. 6:153-158. Abstract
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2005.
Too much of a good thing? Using a spatial agent-based model of transport to evaluate workplace sharing programs in Aberdeen Journal of Transport Geography. 69:83-97.
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2018.
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2017.
A tool for cost-effectiveness analysis of field scale sediment-bound phosphorus mitigation measures and applications. Science of the Total Environment. 586:631-641.
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2017.
Tools to detect, identify and monitor Phytophthora species in natural ecosystems. Journal of Plant Pathology. 89:13-28. Abstract
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2007.
The top 10 oomycete pathogens in molecular plant pathology. Molecular Plant Pathology. 16:413-434.
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2015.
Top 10 plant parasitic nematodes in molecular plant pathology. Molecular Plant Pathology. 14:946-961.
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2013.
Top 10 plant pathogenic bacteria in molecular plant pathology. Molecular Plant Pathology. 13:614-629.
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2012.
Top-down control by Harmonia axyridis mitigates the impact of elevated atmospheric CO2 on a plant-aphid interaction. Agricultural and Forest Entomology. 16:350-358.
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2014.
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2009.
Topographic impacts on wheat yields under climate change: two contrasted case studies in Europe. Theoretical and Applied Climatology. Published online.
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2009.
The topological viewshed; embedding topological pointers into digital terrain models to improve GIS capability for visual landscape analysis. International Journal of Digital Earth. 9
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2016.
The topological viewshed; embedding topological pointers into digital terrain models to improve GIS capability for visual landscape analysis. International Journal of Digital Earth. 9:1185-1205.
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2016.
Total global agricultural land footprint associated with UK food supply 1986-2011. Global Environmental Change. 43:72-81.
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2017.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. Published online..
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2016.
Tourism and sustainable development on the Isle of Eigg, Scotland. Scottish Geographical Journal. 132:210-233.
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2016.
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2008.
Toward a regional and world geography under a changed climate. Eurasian Geography and Economics. 52:1-11.
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2011.
Toward understanding the role of aphid effectors in plant infestation. Molecular Plant Microbe Interactions. 26:25-30.
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2013.
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2019.
Towards a complete soil C and N cycle: incorporating the soil fauna. Ecology. 88:1611-1621.
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2007.
Towards a cross-sectoral analysis of land use decision-making in Scotland. Landscape and Urban Planning. 100:1-10.
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2011.
Towards a mechanistic understanding of dispersal evolution in plants: conservation implications. Diversity and Distributions. 16(4):690-702.
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2010.
Towards a method of evaluating social innovation in forest-dependent communities: Firsy suggestions from a a science-stakeholder collaboration. Forest Policy and Economics. 104:9-22.
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2019.
Towards a microbial process-based understanding of the resilience of peatland ecosystem service provisioning - a research agenda. Science of The Total Environment. 759:ArticleNo.143467.
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2020.
Towards a more exact definition of the importance of competition - a reply to Freckleton et al. (2009). Journal of Ecology. 98(4):719-724.
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2010.
Towards a simple dynamic process conceptualization in rainfall runoff models using multi-criteria calibration and tracers in temperate, upland catchments. Hydrological Processes.. 24(3):260-275.
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2010.
Towards a unified paradigm for sequence-based identification of fungi. Molecular Ecology. 22:5271-5277.
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2013.
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2014.
Towards an indicator-based assessment of cultural heritage as a cultural ecosystem service - a case study of Scottish landscapes. Ecological Indicators. 95:288-297.
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2018.
Towards an understanding of how RxLR-effector proteins are translocated from oomycetes into host cells. Fungal Genetics Reviews. 24:27-36.
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2010.
Towards an understanding of the control of 'crumbly' fruit in red raspberry. SpringerPlus. 4:223.
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2015.
Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry. Theoretical and Applied Genetics. 123:585-601.
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2011.
Towards automatic calibration of neighbourhood influence in cellular automata land-use models. Computers Environment and Urban Systems. 79:ArticleNo.101416.
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2020.
Towards fruitful metabolomics: High throughput analyses of polyphenol composition in berries using direct infusion mass spectrometry. Journal of Chromatography B. 871:362-369. Abstract
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2008.
Towards genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles. G3 Genes, Genomes, Genetics. 11:ArticleNo.jkaa058.
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2021.
Towards more effective online environmental information provision through tailored natural language generation: Profiles of Scottish river user groups and an evaluative online experiment. Science of the Total Environment. 673:643-655.
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2019.
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2008.
Towards the construction of a typology of management models of shooting opportunities in Scotland. Scottish Geographical Journal. Published online..
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2017.
Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans (Review). Journal of Experimental Botany. 60:1133-1140.
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2009.
Toxoplasma gondii coinfection with diseases and parasites in wild rabbits in Scotland. Parasitology. 142:1415-1421.
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2015.
TRA1: A locus responsible for controlling agrobacterium-mediated transformability in barley. Frontiers in Plant Science. 11:ArticleNo.355.
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2020.
Trace elements in recent groundwater of an artesian flow system and comparison with snow: enrichments, depletions, and chemical evolution of the water. Journal of Environmental Monitoring, 12, 208-217..
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2009.
Tracheids in an early vascular plant: a tale of two branches. Botanical Journal of the Linnean Society. 150:115-130. Abstract
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2006.
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2006.
Tracing N, K, Mg and Ca released from decomposing biomass to new tree growth. Part II: A model system simulating root decomposition on clearfell sites. Biomass and Bioenergy. 30(12):1060-1066.
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2006.
Tracing of particulate organic C sources across the terrestrial-aquatic continuum, a case study at the catchment scale (Carminowe Creek, South West England). Science of the Total Environment. 616-617:1077-1088.
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2018.
Tracing the ancestry of modern bread wheats. Nature Genetics. 51:905-911.
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2019.
Tracking (poly)phenol components from raspberries in ileal fluid. Journal of Agricultural and Food Chemistry. 62:7631-7641.
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2014.
Tracking disease resistance deployment in potato breeding by enrichment sequencing. New Phytologist. Published online..
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In Press.
Tracking disease resistance deployment in potato breeding by enrichment sequencing. Plant Biotechnology Journal. 17:540-549.
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2019.
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2009.
Tracking the green invaders: advances in imaging virus infection in plants. Biochemical Journal. 430:21-37.
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2010.
Tracking the sudden oak death pathogen. Molecular Ecology. 16:3735-3736.
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2007.
A trade off between mlo resistance to powdery mildew and increased susceptibility of barley to a newly important disease, Ramularia leaf spot. Journal of Experimental Botany. 65:1025-1037.
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2014.
Trade-offs between indicators of performance and sustainability in breeding suckler beef herds. Journal of Agricultural Science. 155:156-170.
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2017.
Tradeoffs between income, biodiversity, and ecosystem functioning during tropical rainforest conversion and agroforestry intensification. Proceedings of the National Academy of Sciences of the United States of America. 104(12):4973-4978.
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2007.
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2016.
Trafficking arms: oomycete effectors enter host plant cells. Trends in Microbiology. 14:8-11. Abstract
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2006.
Trait assembly in plant assemblages and its modulation by productivity and disturance. Oecologia. 167:209-218.
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2011.
A trait-based approach to crop-weed interactions. European Journal of Agronomy. 70:22-32.
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2015.
Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.
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2020.
Trans-species polymorphism and selection in the MHC class II DRA genes of domestic sheep. PLoS One. 5:-e11402.
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2010.
A transcript and metabolite atlas of blackcurrant fruit development highlights hormonal regulation and reveals the role of key transcription factors. Frontiers in Plant Science. 9:ArticleNo.1235.
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2018.
Transcript profiling and expression level mapping. Methods in Molecular Biology. 513:81-92.
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2009.
Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA. PLoS Genetics. 9:e1003867.
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2013.
Transcriptional and metabolic profiles of Lolium perenne L. genotypes in response to a PEG induced water stress. Plant Biotechnology Journal. 7:719-732.
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2009.
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2016.
Transcriptional changes in teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology. 139:387-405.
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2012.
A transcriptional reference map of defence hormone responses in potato. Scientific Reports. 5
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2015.
Transcriptional response of Pseudomonas aeruginosa to a phosphate-deficient Lolium perenne rhizosphere. Plant and Soil. 359:25-44.
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2012.
The transcriptome analysis of barley (Hordeum vulgare L.) using the Affymetrix Barley1 GeneChip. Russian Journal of Genetics. 45:1317-1328.
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2009.
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2014.
Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract
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2009.
The transcriptome of Nacobbus aberrans reveals insights into the evolution of sedentary endoparasitism in plant-parasitic nematodes. Genome Biology and Evolution. 6:2181-2194.
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2014.
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2011.
Transcriptome sequencing of an ecologically important graminivorous sawfly: a resource for marker development. Conservation Genetics Resources. 3:789-795.
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2011.
Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Research. 22:1184-1195.
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2012.
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2017.
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2022.
A transdisciplinary approach to the economic analysis of the European Water Framework Directive. Ecological Economics. 116:34-45.
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2015.
The transfer of 239/240Pu to cow milk. Journal of Environmental Radioactivity. 98(1-2):191-204.
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2007.
The transfer of different forms of 35S to goat milk. Journal of Environmental Radioactivity. 98(1-2):177-190.
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2007.
The transfer of radiocaesium to ewes through a breeding cycle - an illustration of the pitfalls of the transfer coefficient. Journal of Environmental Radioactivity. 98(1-2):24-35.
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2007.
The transfer of radionuclides from saltmarsh vegetation to sheep tissues and milk. Journal of Environmental Radioactivity. 98(1-2):36-49.
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2007.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
Transformation in a changing climate: a research agenda. Climate and Development. Published online..
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2017.
Transformation of vanadinite (Pb5(VO4)3Cl) by fungi. Environmental Microbiology. Published online..
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2014.
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2016.
Transgenic or not? No simple answer EMBO Reports. 13:1057-1061.
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2012.
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2006.
Transhumance livestock production in the Northern Areas of Pakistan: nutritional inputs and productive outputs. Agriculture, Ecosystems and Environment. 117(2-3):195-204.
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2006.
Transient and asymptotic dynamics of reinforcement learning in games. Games and Economic Behavior. 61(2):259-276.
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2007.
Transit time distributions of a conceptual model: their characteristics and sensitivities. Hydrological Processes. 24(12):1719-1729.
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2010.
Transition to density dependence in a reintroduced ecosystem engineer. Biodiversity and Conservation. 28:3803-3830.
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2019.
Transitions to greater legume inclusion in cropland: defining opportunities and estimating benefits for the nitrogen economy. Food and Energy Security. 8:ArticleNo.e00175.
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2019.
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2017.
Translocation of 15N indicates nitrogen recycling in the mat-forming lichen Cladonia portentosa. New Phytologist. 168:423-434. Abstract
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2005.
Translocation of N in the xylem of cherry and poplar during remobilization: scaling up to field-grown trees. Tree Physiology. 26:527-536.
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2006.
Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract
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2006.
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2007.
Translocation tactics: a framework to support the IUCN guidelines for wildlife translocations and improve the quality of applied methods. Journal of Applied Ecology. 52:1598-1607.
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2015.
Transmission of pro-environmental norms in large organizations. Sustainable Production and Consumption. 19:25-32.
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2019.
Transparent soil for imaging the rhizosphere. PLoS ONE. 7:e44276.
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2012.
Transparent soil microcosms allow 3D spatial quantification of soil microbiological processes in vivo. Plant Signaling and Behavior. 9
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2014.
Transpiration: how many functions? New Phytologist. 179:905-908. Abstract
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2008.
Treatment of organic resources before soil incorporation in semi-arid regions improves resilience to El Nino, and increases crop production and economic returns. Environmental Research Letters. 14:ArticleNo.085004.
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2019.
Treatment with fungicides influences phytochemical quality of blackcurrant juice. Annals of Applied Biology. 160:86-96.
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2012.
Tree competition and defense against herbivores: currency matters when counting the cost. Tree Physiology. 31:579-581.
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2011.
Tree species' influences on soil carbon dynamics revealed with natural abundance C-13 techniques. Plant and Soil. 400:285-296.
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2016.
Trees, soils, and warthogs - distribution of services and disservices from reforestation areas in southern Ethiopia. Forest Policy and Economics. 84:112-119.
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2017.
Trend analysis for integrated regional climate change impact assessments in the Lusatian river catchments (north-eastern Germany). Regional Environmental Change. 17:1751-1762.
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2017.
The tribunal atmosphere: On qualitative barriers to access to justice. Geoforum. 119:61-71.
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2021.
Triggering change: towards a conceptualisation of major change processes in farm decision-making. Journal of Environmental Management. 104:142-151.
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2012.
Trophy hunters' willingness to pay for wildlife conservation and community benefits. Conservation Biology. 29:1111-1121.
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2015.
The tropical peatland plantation-carbon assessment tool: estimating CO2 emissions from tropical peat soils under plantations. Mitigation and Adaptation Strategies for Global Change. 19:863-885.
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2014.
Tropical wetland ecosystem service assessments in East Africa; A review of approaches and challenges. Environmental Modelling and Software. 102:260-273.
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2018.
tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species. PLoS ONE. 9:e102502.
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2014.
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2020.
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2018.
TRY plant trait database - enhanced coverage and open access. Global Change Biology. 26:119-188.
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2020.
TSIS: an R package to infer alternative splicing isoform switches for time-series data. Bioinformatics. 33:3308-3310.
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2017.
Turnover of carbon, nitrogen and sulfur in bovine longissimus dorsi and psoas major muscles: Implications for isotopic authentication of meat. Journal of Animal Science. 87:905-913.
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2009.
Turnover of labile and recalcitrant soil carbon differ in response to nitrate and ammonium deposition in an ombrotrophic peatland. Global Change Biology. 16(8):2307-2321.
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2010.
Turnover of recently assimilated carbon in arctic bryophytes. Oecologia. 167:325-337.
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2011.
Twenty three unsolved problems in hydrology (UPH) - a community perspective. Hydrological Sciences Journal.. 64:1141-1158.
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2019.
The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies. Molecular Microbiology. 77:252-271.
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2010.
Two decades of altered snow cover does not affect soil microbial ability to catabolize carbon compounds in an oceanic alpine heath. Soil Biology and Biochemistry. 124:101-104.
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2018.
Two grapevine viruses in an ornamental Vitis species from Scotland. Journal of Plant Pathology. 87:-76. Abstract
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2005.
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2022.
Two lowland stream riffles - linkages between physical habitats and macroinvertebrates across multiple spatial scales. Aquatic Ecology. 41(3):475-490.
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2007.
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2013.
Two plant-viral movement proteins traffic in the endocytic recycling pathway. Plant Cell. 17:164-181. Abstract
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2005.
Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates. Nucleic Acids Research. 39:8869-8880.
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2011.
Two year dynamics of foliage labelling in 8 year-old Pinus pinaster trees with 15N 26Mg and 42Ca - simulation of Ca transport using an upscaling approach. Annals of Forest Science. 68:169-178.
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2011.
Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing. 19:49-56.
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2009.
A two-point method for determining the soil water characteristic of typical northern temperate boreal soils. Geoderma Regional. 5:71-76.
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2015.
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2013.
Ty1-copia retrotransposon-based SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics. 110:1195-1202.
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2005.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
Typology and distribution of small farms in Europe: Towards a better picture. Land Use Policy. 75:784-798.
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2018.
A typology for defining agritourism. Tourism Management. 31(6):754-758.
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2010.
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2013.
U-box E3 ubiquitin ligase PUB17 acts in the nucleus to promote specific immune pathways triggered by Phytophthora infestans. Journal of Experimental Botany. 66:3189-3199.
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2015.
U12-dependent intron splicing in plants. Current Topics in Microbiology and Immunology. 326:61-82.
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2008.
Ubiquitination in plant meiosis: recent advances and high throughput methods. Frontiers in Plant Science. 12:ArticleNo.667314.
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2021.
The UK Environmental Change Network: Emerging trends in the composition of plantand animal communities and the physical environment. Biological Conservation. 142(12):2814-2832.
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2009.
UK food and nutrition security during and after the COVID-19 pandemic. Nutrition Bulletin. 46:88-97.
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2021.
UK land-use change and its impact on SOC: 1925-2007. Global Biogeochemical Cycles. 25
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2011.
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2016.
Ultradian activity rhythms in large groups of newly hatched chicks (Gallus gallus domesticus). Behavioural Processes. 78(3):408-415.
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2008.
Ultrasonographic examination of ocular lesions in farmed halibut. Veterinary Journal. 173(2):456-458.
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2007.
Umami compunds are a determinant of the flavor of potato (Solanum tuberosum L.).. Journal of Agricultural and Food Chemistry. 55:9627-9633. Abstract
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2007.
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2013.
Uncertainty evaluation of mass discharge estimates from a contaminated site using a fully Bayesian framework. Water Resources Research. 46(W12552)
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2010.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
The uncertainty of crop yield projections is reduced by improved temperature response functions. Nature Plants. 3:ArticleNo.17102.
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2017.
Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research. 198:80-92.
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2016.
Uncovering mechanisms behind mosquito seasonality by integrating mathematical models and daily empirical population data: Culex pipiens in the UK. Parasites and Vectors. 12:ArticleNo.74.
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2019.
Underground allies: how and why do mycelial networks help plants defend themselves? BioEssays. 36:21-26.
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2014.
Underground signals carried through common mycelial networks warn neighbouring plants of aphid attack. Ecology Letters. 16:835-843.
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2013.
Undernutrition and stage of gestation influence fetal adipose tissue gene expression. Journal of Molecular Endocrinology. 54:263-275.
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2015.
Understanding and influencing behaviour change by farmers to improve water quality. The Science of the Total Environment. Published online. 408(23):5631-5638.
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2010.
Understanding biological diversity in soil: the UK's Soil Biodiversity Research Programme. Applied Soil Ecology. 33(2):101-113.
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2006.
Understanding environmental regulation: disciplinary interactions and path dependency. Environment and Planning C. 25:250-268.
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2007.
Understanding H-2/H-1 systematics of leaf wax n-alkanes in coastal plants at Stiffkey saltmarsh, Norfolk, UK. Geochimica et Cosmochimica Acta.. 128:13-28.
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2014.
Understanding knowledge-workers’ interactions with workplace greenspace: Open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. Published online..
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2016.
Understanding knowledge-workers’ interactions with workplace greenspace: open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. Published online..
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2016.
Understanding knowledge-workers’ interactions with workplace greenspace: open space use and restoration experiences at urban-fringe business sites. Environment and Behavior. 49:314-338.
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2017.
Understanding mental constructs of biodiversity - implications for biodiversity management and conservation. Biological Conservation. 136(2):271-282.
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2007.
Understanding people's ideas on natural resource management: research on social representations of nature. Society and Natural Resources.. 25:1167-1181.
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2012.
Understanding plantation transformation using a size-structured spatial population model. Forest Ecology and Management. 261:799-809.
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2011.
Understanding social innovation for the well-being of forest-dependent communities: a preliminary theoretical framework. Forest Policy and Economics. 97:163-174.
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2018.
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2013.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments. Rapid Communications in Mass Spectrometry. 26:2413-2421.
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2012.
Understanding spatial variability of soil properties: a key step in establishing field- to farm-scale agro-ecosystem experiments (vol 26, pg 2413, 2012). (Correction). Rapid Communications in Mass Spectrometry. 27:284.
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2013.
Understanding the cognitive basis for human-wildlife relationships. International Journal of Sociology. 40:104-123.
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2010.
Understanding the economic barriers to the adoption of agroforestry A Real Options analysis. Journal of Environmental Management. 302
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2021.
Understanding the economic value of water ecosystem services from tropical forests: a systematic review for South and Central America. Journal of Forest Economics. 21:97-106.
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2015.
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2010.
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2014.
Understanding the materialities and moralities of property: reworking collective claims to land. Transactions of the Institute of British Geographers. 32(4):507-522.
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2007.
Understorey plant community composition reflects invasion history decades after invasive Rhododendron has been removed. Journal of Applied Ecology. 55:874-884.
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2018.
Unearthing human pathogens at the agricultural-environment interface: A review of current methods for the detection of Escherichia coli O157 in freshwater ecosystems. Agriculture, Ecosystems and Environment. 140:354-360.
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2011.
Unearthing the picturesque: the validity of the preference matrix as a measure of landscape aesthetics. Landscape and Urban Planning. 124:1-13.
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2014.
The unfolded protein response and programmed cell death are induced by expression of garlic virus X p11 in Nicotiana benthamiana. Journal of General Virology. 97:1462-1468.
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2016.
A unified approach to model selection using the likelihood ratio test. Methods in Ecology and Evolution. 2:155-162.
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2011.
A unified classification system for eukaryotic transposable elements. Nature Reviews Genetics. 8:973-982. Abstract
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2007.
The UNITE database for molecular identification of fungi - recent updates and future perspectives. New Phytologist. 186(2):281-285.
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2010.