Publications list
Extreme value analysis of decadal variations in storm surge elevations. Journal of Marine Systems. 67:189-200. Abstract
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2007.
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2020.
Adapting scenarios for climate adaptation: Practitioners’ perspectives on a popular planning method. Environmental Science and Policy. 104:13-19.
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2020.
Mineral sources of aqua regia extractable base cations in Scottish soils interpreted from Cubist models trained with quantitative mineralogy data. Chemical Geology. 551:ArticleNo.119773.
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2020.
Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics. 20:791-811.
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2009.
Pre-treatment of soil X-ray powder diffraction data for cluster analysis. Geoderma. 337:413-424.
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2019.
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2018.
powdR: An R package for quantitative mineralogy using full pattern summation of X-ray powder diffraction data. Computers and Geosciences. 147:ArticleNo.104662.
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2021.
Alpine cushion plants inhibit the loss of phylogenetic diversity in severe environments. Ecology Letters. 16:478-486.
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2013.
DRASTIC-INSIGHTS: Querying information in a plant gene expression database. Nucleic Acids Research. 34:D712-D716. Abstract
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2006.
Barriers to institutional learning and innovations in the forest sector in Europe: Markets, policies and stakeholders. Forest Policy and Economics. 13:124-131.
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2011.
Potash fertilizer promotes incipient salinization in groundwater irrigated semi-arid agriculture. Scientific Reports. 10:ArticleNo.3691.
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2020.
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2005.
Socio-economic changes, social capital and implications for climate change in a changing rural Nepal. GeoJournal. Published online..
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2014.
Trees, soils, and warthogs - distribution of services and disservices from reforestation areas in southern Ethiopia. Forest Policy and Economics. 84:112-119.
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2017.
Socio-economic changes, social capital and implications for climate change in a changing rural Nepal. GeoJournal. 81:169-184.
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2016.
Caring for Cinderella : Perceptions and experiences of peatland restoration in Scotland. People and Nature. Published online..
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2021.
Conservation in the face of ambivalent public perceptions - the case of peatlands as "the good, the bad and the ugly". Biological Conservation. 206:181-189.
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2017.
Early response mechanisms of perennial ryegrass (Lolium perenne) to phosphorous deficiency. Annals of Botany. 107:243-254.
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2011.
Interrogating pollution sources in a mangrove food web using multiple stable isotopes. Science of the Total Environment. 640-641:501-511.
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2018.
Global change, parasite transmission and disease control: lessons from ecology. Philosophical Transactions of the Royal Society B, Biological Sciences. 372:ArticleNo.20160088.
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2017.
Wilt and collapse of Cuphea ignea caused by Phytophthora tropicalis in Italy. Plant Disease. 90:680-680. Abstract
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2006.
First report of brown rot and wilt of fennel caused by Phytophthora megasperma in Italy. Plant Disease. 90:-110. Abstract
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2006.
Root and foot rot of Lantana caused by Phytophthora cryptogea. Plant Disease. 89:909-909. Abstract
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2005.
Message in a bubble: shuttling small RNAs and proteins between cells and interacting organisms using extracellular vesicles. Annual Review of Plant Biology. 72:497-524.
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2021.
Magnesium in crop production and food quality. Plant and Soil. 457:1-3.
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2020.
Zinc for better crop production and human health. Plant and Soil. 411:1-4.
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2017.
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2006.
Cold-dependent expression and alternative splicing of arabidopsis long non-coding RNAs. Frontiers in Plant Science. 10:ArticleNo.235.
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2019.
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2018.
Evolutionary relationships among barley and Arabidopsis core circadian clock and clock-associated genes. Journal of Molecular Evolution. 80:108-119.
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2015.
Rapid and dynamic alternative splicing impacts the arabidopsis cold response transcriptome. Plant Cell. 30:1424-1444.
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2018.
Seroprevalence of respiratory viral pathogens of indigenous calves in Western Kenya. Research in Veterinary Science. 108:120-124.
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2016.
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2014.
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2017.
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2008.
Investigation of salicylate hepatic responses in comparison with chemical analogues of the drug. Biochimica et Biophysica Acta - Molecular Basis of Disease. 1862:1412-1422.
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2016.
Metformin selectively targets redox control of complex I energy transduction. Redox Biology. 14:187-197.
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2018.
Metformin selectively targets redox control of complex I energy transduction. Redox Biology. 14:187-197.
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2018.
Environmental change impacts on the C- and N-cycle of European forests: a model comparison study. Biogeosciences. 10:1751-1773.
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2013.
Uncertainty of wheat water use: Simulated patterns and sensitivity to temperature and CO2. Field Crops Research. 198:80-92.
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2016.
Spatial and temporal variability of spring barley yield and quality quantified by crop simulation model. Agronomy. 10:ArticleNo.393.
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2020.
Predicting dates of head initiation and yields of broccoli crops grown throughout Scotland. European Journal of Agronomy. 116:ArticleNo.126055..
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2020.
Using historical climate observations to understand future climate change crop yield impacts in the Southeastern US. Climatic Change. 134:311-326.
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2016.
A remote sensing-based approach to management zone delineation in small scale farming systems. Agronomy. 10:ArticleNo.1767.
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2020.
Implications of climate model biases and downscaling on crop model simulated climate change impacts. European Journal of Agronomy. 88:63-75.
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2017.
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2012.
The effects of projected climate and climate extremes on a winter and summer crop in the southeast. Agricultural and Forest Meteorology. 248:109-118.
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2018.
Rainfall and temperature impacts on barley (Hordeum vulgare L.) yield and malting quality in Scotland. Field Crop Research. 241:ArticleNo.107559.
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2019.
The impact of climate change on barley yield in the Mediterranean basin. European Journal of Agronomy. 106:1-11.
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In Press.
Assessing the robustness of vegetation indices to estimate wheat N in Mediterranean environments. Remote Sensing. 6:2827-2844.
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2014.
The metabolic and developmental roles of cartotenoid cleavage dioxygenase 4 from potato. Plant Physiology. 154:656-664.
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2010.
Long term repeated burning in a wet sclerophyll forest reduces fungal and bacterial biomass and responses to carbon substrates. Soil Biology and Biochemistry. 40(9):2246-2252.
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2008.
Land use and a low-carbon society. Earth and Environmental Science Transactions of the Royal Society of Edinburgh, 103, 165-173..
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2012.
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2015.
Environmental and gentic factors associated with solanesol accumulation in potato leaves. Frontiers in Plant Science. 7
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2016.
Genome-wide QTL and bulked transcriptomic analysis reveals new candidate genes for the control of tuber carotenoid content in potato (Solanum tuberosum L.). Theoretical and Applied Genetics. 127:1917-1933.
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2014.
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2017.
Determination of zeolite-group mineral compositions by electron probe microanalysis. Mineralogical Magazine. 80:781-807.
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2016.
Scale-dependent effects of coppicing on the species pool of late successional beech forests in the central Apennines, Italy. Applied Vegetation Science. 19:474-485.
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2016.
Environmental incomes: Refined standard and extended accounts applied to cork oak open woodlands in Andalusia, Spain. Ecological Indicators. 117:ArticleNo.106551.
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2020.
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2020.
Bridging the gap between national and ecosystem accounting application in Andalusian Forests, Spain. Ecological Economics. 157:218-236.
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2019.
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2020.
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2020.
A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro. Journal of Molecular Biology. 376:932-937. Abstract
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2008.
Climate change effects on physiology and population processes of hosts and vectors that influence the spread of hemipteran-borne plant viruses. Global Change Biology. 15:1884-1894.
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2009.
Subcellular distribution of mutant movement proteins of Cucumber mosaic virus fused to green fluorescent proteins. Journal of General Virology. 86:1223-1228. Abstract
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2005.
Translocation of the Tomato bushy stunt virus P19 protein into the nucleus by ALY proteins compromises its silencing suppressor activity. Journal of Virology. 80:9064-9072. Abstract
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2006.
Characterization of immune cell infiltration in the placentome of water buffaloes (Bubalus bubalis) infected with Neospora caninum during pregnancy. Journal of Comparative Pathology. 150:463-468.
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2014.
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2014.
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2013.
Cytokine expression in the placenta of pregnant cattle after inoculation with Neospora caninum. Veterinary Immunology and Immunopathology. 161:77-89.
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2014.
Integrating sediment biogeochemistry into 3D oceanic models: a study of benthic-pelagic coupling in the Black Sea. Ocean Modelling. 101:83-100.
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2016.
Integrating sediment biogeochemistry into 3D oceanic models: A study of benthic-pelagic coupling in the Black Sea. Ocean Modelling. 101:83-100.
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2016.
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2011.
Assessment of fluorescein-based fluorescent dyes for tracing Neotyphodium endophytes in planta. Mycologia. 105:221-229.
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2013.
The contribution of farm-scale experiments to the understanding of soil processes and implications for ecosystem services. Guest Editors' introduction. European Journal of Soil Science. 67:359.
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2016.
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2007.
Securing the future of US agriculture: The case for investing in new entry sustainable farmers. Elementa - Science of the Anthropocene. 7:ArticleNo.17.
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2019.
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2013.
Little impact of over-winter parasitism on a free-ranging ungulate in the high Arctic. Functional Ecology. 32:1046-1056.
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2018.
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2012.
Disease transmission in an extreme environment: Nematode parasites infect reindeer during the Arctic winter. International Journal for Parasitology. 42:789-795.
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2012.
Modelling an ecosystem: the example of agro-ecosystems. Ecological Modelling. 222:1163-1173.
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2011.
How might we model an ecosystem? Ecological Modelling. 220:1935-1949.
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2009.
Asynchronous and synchronous updating in individual-based models. Ecological Modelling. 212:522-527. Abstract
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2008.
Mapping of earthworm distribution for the British Isles and Eire highlights the under-recording of an ecologically important group. Biodiversity and Conservation. 21:475-485.
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2012.
Signaling in induced resistance. Advances in Virus Research. 76:57-121.
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2010.
Sexual selection and senescence: Male size-dimorphic ungulates evolved relatively smaller molars than females. American Naturalist. 170(3):370-380.
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2007.
Recovery of biochemical functionality in polluted flood-plain soils: The role of microhabitat differentiation through revegetation and rehabilitation of the river dynamics. Soil Biology & Biochemistry. 40:2088-2097. Abstract
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2008.
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2021.
Framework for quantification of the dynamics of root colonization by Pseudomonas fluorescens isolate SBW25. Frontiers in Microbiology. 11:ArticleNO.585443..
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2020.
Implications of shifts in coffee production on tree species richness, composition and structure on small farms around Mount Kenya. Biodiversity and Conservation. 22:2919-2936.
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2013.
Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency. Journal of Plant Nutrition and Soil Science. 174:3-11.
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2011.
Organic matter characterization of sediments in two river beaches from Northern Portugal for forensic application. Forensic Science International. 233:403-415.
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2013.
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2016.
Protecting and restoring Europe’s waters: an analysis of the future development needs of the Water Framework Directive. Science of Total Environment. 658:1228-1238.
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2019.
Extracts of the seaweed Bifurcaria bifurcata display antifungal activity against human dermatophyte fungi. Journal of Oceanology and Limnology. 37:848-854.
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2019.
LAI retrieval from multiangular image classification and inversion of a ray tracing model. Remote Sensing of Environment. 98:414-428.
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2005.
Estimation of maize canopy properties from remote sensing by inversion of 1-D and 4-D models. Precision Agriculture. 11:319-334.
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2010.
The importance of mineral determinations to PROFILE base cation weathering release rates: a case study. Biogeosciences. 16:1903-1920.
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2019.
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2020.
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2018.
Simulation scenarios of spatio-temporal arrangement of crops at the landscape scale. Environmental Modelling and Software. 25(12):1881-1889.
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2010.
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2005.
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2006.
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2005.
Microsatellite markers for raspberry and blackberry. Journal of the American Society for Horticultural Science. 135:271-278.
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2010.
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2017.
Infections do not predict shedding in co-infections with two helminths from a natural system. Ecology. 95:1684-1692.
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2013.
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2012.
Monitoring the arsenic and iodine exposure of seaweed-eating North Ronaldsay sheep from the gestational and suckling periods to adulthood by using horns as a dietary archive. Environmental Science & Technology. 41:2673-2679. Abstract
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2007.
Facilitative plant interactions and climate simultaneously drive alpine plant diversity. Ecology Letters. 17:193-202.
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2014.
Olive oil nutritional labeling by using Vis/NIR spectroscopy and compositional statistical methods. Innovative Food Science and Emerging Technologies. 51:139-147.
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2019.
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2011.
Fungal bioweathering of mimetite and a general geomycological model for lead apatite mineral biotransformations. Applied and Environmental Microbiology. 81:4955-4964.
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2015.
Transformation of vanadinite (Pb5(VO4)3Cl) by fungi. Environmental Microbiology. Published online..
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2014.
Sustainability transitions to low carbon societies: insights from European community-based initiatives. Celata, F., Dinnie, L. & Holsten, A. Reg Environ Change (2019) 19: 909. https://doi.org/10.1007/s10113-019-01488-6. 19:909-912.
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2019.
Adaptation of water resources systems to changing society and environment: a statement by the International Association of Hydrological Sciences. Hydrological Sciences Journal. 61:2803-2817.
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2016.
The effects of drought stress on leaf gene expression during flowering in blackcurrant (Ribes nigrum L.). European Journal of Horticultural Science. 80:39-46.
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2015.
Effects of drought stress during flowering of two pot-grown blackcurrant (Ribes nigrum L.) cultivars. Scientia Horticulturae. 162:365-373.
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2013.
Stand biometry and leaf area distribution in an old olive grove at Andria, southern Italy. Annals of Forest Science. 64:491-501. Abstract
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2007.
Spatial assessment of land degradation through key ecosystem services: the role of globally available data. Science of the Total Environment. 628-629:539-555.
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2018.
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2006.
Relationships between understory specialist species and local management practices in coppiced forests - evidence from the Italian Apennines. Forest Ecology and Management. 385:35-45.
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2017.
Testing a norm-based policy for waste management: an agent-based modeling simulation on nudging recycling behavior. Journal of Environmental Management. 294:ArticleNo.112938.
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2021.
Monitoring and screening plant populations with combined thermal and chlorophyll fluorescence imaging. Journal of Experimental Botany. 58:773-784. Abstract
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2007.
Climate change, plant diseases and food security: an overview. Plant Pathology. 60:2-14.
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2011.
Mitigating arable soil compaction: A review and analysis of available cost and benefit data. Soil and Tillage Research. 146:10-25.
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2015.
Carbon, water and energy exchange dynamics of a young pine plantation forest during the initial fourteen years of growth. Forest Ecology and Management. 410:12-26.
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2018.
The photoreversible fluorescent protein iLOV outperforms GFP as a reporter of plant virus infection. Proceedings of the National Academy of Sciences, USA. 105:20038-20043. Abstract
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2008.
Assessing CLPPs using MicroRespTM: a comparison with Biolog and other methods. Journal of Soils and Sediments. 7(6):406-410.
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2007.
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2014.
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2015.
New tools for in vivo fluorescence tagging. Current Opinion in Plant Biology. 8:565-573. Abstract
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2005.
Carbon stocks in Scottish peatlands. Soil Use and Management. 25:105-112.
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2009.
Comparison of soil carbon stocks in Scottish soils between 1978 and 2009. European Journal of Soil Science. 64:455-465.
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2013.
Comment on "Microbially derived inputs of soil organic matter: are current estimates too low?" Environmental Science and Technology. 42(8):3115-3115.
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2008.
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2017.
The role of secretion systems and small molecules in soft-rot enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50:425-449.
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2012.
Pathogenic potential to humans of bovine Escherichia coli O26, Scotland. Emerging Infectious Diseases. 18:439-448.
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2012.
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2015.
Exposure assessment for pesticide intake from multiple food products: a Bayesian latent-variable approach. Risk Analysis. 28:1727-1736. Abstract
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2008.
Cadmium availability to wheat grain in soils treated with sewage sludge or metal salts. Chemosphere. 66(8):1415-1423.
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2007.
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2008.
Preface. Mathematical Modelling of Natural Phenoma. 8:1-4.
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2013.
The effects of ethylene, 1-MCP and AVG on sprouting in sweetpotato roots. Postharvest Biology and Technology. 85:89-93.
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2013.
Soil contamination and persistence of pollutants following organophosphate sprays and explosions to control red-billed quelea (Quelea quelea). Pest Management Science. 69:386-396.
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2013.
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2012.
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2010.
Selective breeding for susceptibility to myopia reveals a gene-environment interaction. Investigative Ophthalmology and Visual Science. 52:4003-4011.
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2011.
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2015.
Microbial and microfaunal communities in phosphorus limited, grazed grassland change composition but maintain homeostatic nutrient stoichiometry. Soil Biology and Biochemistry. 75:94-101.
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2014.
An eQTL analysis of partial resistance to Puccinia hordei in barley. PLoS One. 5:-e8598.
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2010.
Biosynthesis of branched-chain amino acids is essential for effective symbioses between betarhizobia and Mimosa pudica. Microbiology. 158:1758-1766.
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2012.
Combining genetical genomics and bulked segregant analysis-based differential expression: an approach to gene localization. Theoretical and Applied Genetics. 122:1375-1383.
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2011.
Effect of phosphoglycerate mutase and fructose 1,6-bisphosphatase deficiency on free-living and symbiotic Burkholderia phymatum. Microbiology-SGM. 158:1127-1136.
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2012.
Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia. International Journal of Systematic and Evolutionary Microbiology. 58(9):2174-2179.
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2008.
Functional analysis of pathogenicity proteins of the potato cyst nematode Globodera rostochiensis using RNAi. Molecular Plant-Microbe Interactions. 18:621-625. Abstract
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2005.
Identification and rapid mapping of a gene conferring broad-spectrum late blight resistance in the diploid potato species Solanum verrucosum through DNA capture technologies. Theoretical and Applied Genetics.. 131:1287-1297.
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2018.
QTL dissection of floral traits in Streptocarpus(Gesneriaceae). Euphytica. 216:ArticleNo.110.
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2020.
Soil microbial activity and community composition as influenced by application of pig biogas slurry in paddy field in southeast China. Paddy and Water Environment. 18:15-25.
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2020.
Reducing DBPs formation in chlorination of Br-containing Diclofenac via Fe-Cu-MCM-41/O-3 peroxidation: Efficiency, characterization DBPs precursors and mechanism. Journal of the Taiwan Institute of Chemical Engineers. 84:212-221.
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2018.
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2008.
Azoarcus olearius sp.nov., a nitrogen-fixing bacterium isolated from oil-contaminated soil. International Journal of Systematic and Evolutionary Microbiology. 63:3755-3761.
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2013.
β-Rhizobia from Mimosa pigra, a newly discovered invasive plant in Taiwan. New Phytologist. 168:661-675. Abstract
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2005.
A comparison of molecular methods for monitoring soil nematodes and their use as biological indicators. European Journal of Soil Science. 46:319-324.
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2010.
Heritability of ocular component dimensions in chickens: genetic variants controlling susceptibility to experimentally-induced myopia and pre-treatment eye size are distinct. Investigative Opthalmology & Visual Science. 52:4012-4020.
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2011.
Evaluating the impacts of climate variability and disturbance regimes on the historic carbon budget of a forest landscape. Agricultural and Forest Meteorology. 180:265-280.
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2013.
Interactions between light intensity and phosphorus nutrition affect the phosphate-mining capacity of white lupin (Lipinus albus L.). Journal of Experimental Botany. 65:2995-3003.
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2014.
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2016.
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2006.
Genetic diversity of SIRE-1 retroelements in annual and perennial glycine species revealed using SSAP. Cellular and Molecular Biology Letters. 12:103-110. Abstract
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2007.
Niche-based responses in addressing the climatic constraints to farm production: analogues to adapting climate change in Nepal. Climate and Development. 5:174-181.
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2013.
Pathogenesis of scrapie in ARQ/ARQ sheep after subcutaneous infection: Effect of lymphadenectomy and immune cell subset changes in relation to prion protein accumulation. Veterinary Immunology and Immunopathology. 152:348-358.
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2013.
Plant phytaspases and animal caspases: structurally unrelated death proteases with a common role and specificity. Physiologia Plantarum. 145:77-84.
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2012.
Tissue disruption activates a plant caspase-like protease with TATD cleavage specificity. Plant Stress. 2:89-95. Abstract
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2008.
Phytaspase, a relocalisable cell death promoting plant protease with caspase specificity. EMBO Journal. 29:1149-1161.
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2010.
Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays). Journal of Experimental Botany. 66:3151-3162.
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2015.
The effect of semi-dwarf genes on root system size in field-grown barley. Theoretical and Applied Genetics. 112:779-786. Abstract
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2006.
Diversity of Phytophthora infestans from Poland. Plant Pathology. 63:203-211.
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2014.
Morphological, genetic and molecular characteristics of barley root hair mutants. Journal of Applied Genetics. 55:433-447.
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2014.
Cucumber mosaic virus 2a polymerase and 3a movement proteins independently affect both virus movement and the timing of symptom development in zucchini squash. Journal of General Virology. 86:1213-1222. Abstract
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2005.
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2020.
Preharvest application of exogenous abscisic acid (ABA) or an ABA analogue does not affect endogenous ABA concentration of onion bulbs. Plant Growth Regulation. 52:117-129. Abstract
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2007.
The effect of the transition between controlled atmosphere and regular atmosphere storage on bulbs of onion cultivars SS1, Carlos and Renate. Postharvest Biology and Technology. 44:228-239. Abstract
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2007.
The effect of 1-methylcyclopropene (1-MCP) on the physical and biochemical characteristics of onion cv. SS1 bulbs during storage. Postharvest Biology and Technology. 44:131-140. Abstract
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2007.
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2020.
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2015.
Emergence of 13_A2 blue lineage of Phytophthora infestans was responsible for severe outbreaks of late blight on tomato in South-West India. Journal of Phytopathology. 161:49-58.
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2013.
Can fuzzy cognitive mapping help in agricultural policy design and communication? Land Use Policy. 45:64-75.
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2015.
Advances in imaging RNA in plants. Trends in Plant Science. 15:196-203.
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2010.
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2007.
Stability of recombinant plant viruses containing genes of unrelated plant viruses. Journal of General Virology. 88:1347-1355. Abstract
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2007.
Engineered resistance in potato against potato leafroll virus, potato virus A and potato virus Y. Virus Genes. 47:86-92.
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2013.
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2011.
The rise and rise of halloysite. Clay Minerals. 51:303-308.
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2016.
An explicit immunogenetic model of gastrointestinal nematode infection in sheep. Journal of the Royal Society Interface. 11:ArrticleNo.20140416..
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2014.
Modelling species presence-absence in the ecological niche theory framework using shape-constrained generalized additive models. Ecological Modelling. 418:ArticleNo.108926.
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2020.