Publications list
Sequence and characterization of six mitochondrial subgenomes from Globodera rostochiensis: multipartite structure is conserved amongst close nematode relatives. Journal of Molecular Evolution. 65:308-315. Abstract
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2007.
Sequence analysis of the potato aphid Macrosiphum euphorbiae transcriptome identified two new viruses. PLoS ONE. 13:ArticleNo.e0193239.
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2018.
Septic tank discharges as multi-pollutant hotspots in catchments. Science of the Total Environment. 542:854-863.
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2016.
Sentinel systems on the razor's edge: effects of warming on Arctic geothermal stream ecosystems. Global Change Biology. 16(7):1979-1991.
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2010.
Sensitivity to assumptions in models of generalist predation on a cyclic prey. Ecology. 88(10):2576-2586.
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2007.
The sensitivity of carbon turnover in the Community Land Model to modified assumptions about soil processes. Earth Systems Dynamics. 5:211-221.
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2014.
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2011.
Sensing inorganic carbon: C02 and HCO3. Biochemical Journal. 396:e5-e7.
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2006.
A semantic grid service for experimentation with an agent-based model of land use change. Journal of Artificial Societies and Social Simulation.. 10(2):2.
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2007.
Selenium metabolism in plants. Biochimica et Biophysica Acta - General Subjects. 1862:2333-2342.
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2018.
Selenium concentrations in national inventory soils from Scotland and Sweden and their relationships with geochemical factors. Journal of Geochemical Exploration. 121:4-14.
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2012.
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2011.
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2010.
Selenium accumulation by plants. Annals of Botany. 117:217-235.
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2016.
Selective targeting of miRNA-regulated plant development by a viral counter-silencing protein. Plant Journal. 50:240-252. Abstract
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2007.
Selective recovery of the virus-vector trichodorid nematode Paratrichodorus anemones from soil samples by immunomagnetic capture. European Journal of Plant Pathology. 120:85-89. Abstract
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2008.
Selective pressured liquid extraction of estrogenic compounds in soil and analysis by gas chromatography - mass spectrometry. Analytica Chimica Acta. 685:29-35.
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2011.
Selective colonization of insoluble substrates by human faecal bacteria. Environmental Microbiology. 9:667-679. Abstract
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2007.
Selective breeding for susceptibility to myopia reveals a gene-environment interaction. Investigative Ophthalmology and Visual Science. 52:4003-4011.
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2011.
Selective autophagy limits Cauliflower mosaic virus infection by NBR1-mediated targeting of viral capsid protein and particles. Proceedings of the National Academy of Sciences (PNAS). 114:E2026-E2035.
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2017.
Selection of trees for rubbing by red and roe deer in forest plantations. Forest Ecology and Management. 222(1-3):39-45.
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2006.
Selection of feeding sites by horses at pasture: Testing the anti-parasite theory. Applied Animal Behaviour Science. 108(3-4):288-301.
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2007.
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2008.
Selection for increased cyproconazole tolerance in Mycosphaerella graminicola through local adaptation and in response to host resistance. Molecular Plant Pathology. 7:259-268. Abstract
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2006.
Selection footprints in barley breeding lines detected by combining genotyping-by-sequencing with reference genome information. Molecular Breeding. 35:Article11.
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2015.
Selection and characterisation of monepantel resistance in Teladorsagia circumcincta isolates. International Journal for Parasitology - Drugs and Drug Resistance. 5:69-76.
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2015.
Selecting land-based mitigation practices to reduce GHG emissions from the rural land use sector: a case study of North East Scotland. Journal of Environmental Management. 120:93-104.
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2013.
Selecting biological indicators for monitoring soils: A framework for balancing scientific and technical opinion to assist policy development. Ecological Indicators. 9(6):1212-1221.
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2009.
Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida. Journal of Molecular Evolution. 64:689-701. Abstract
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2007.
Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model. Journal of the Royal Statistical Society Series C - Applied Statistics. 58:307-327.
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2009.
Seeing the wood for the trees: hyperspectral imaging for high throughput QTL detection in raspberry, a perennial crop species. Fruit Research. 1:ArticleNo.7.
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2021.
Seeing is not everything: Exploring the landscape experiences of different publics. Landscape and Urban Planning.. 34(4):397-424.
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2009.
Seed limitation, not soil legacy effects, prevents native understory from establishing in oak woodlands in Scotland after removal of Rhododendron ponticum. Restoration Ecology. Published online..
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2018.
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2018.
Seed dormancy, nitrogen nutrition and shade acclimation of Impatiens glandulifera: implications for its successful invasion of a deciduous woodland. Plant Ecology and Diversity. 2:145-153.
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2009.
Seed dispersal by ungulates as an ecological filter: a trait-based meta-analysis. Oikos. 124:1109-1120.
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2015.
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2016.
Sedimentary chemofacies characterization by means of multivariate analysis. Sedimentary Geology. 228:218-228.
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2010.
Sediment Influence on congener-specific PCB bioaccumulation by Mytilus Edulis: a case study from an intertidal hot spot, Clyde Estuary, UK. Journal of Environmental Monitoring. 8(9):887-896.
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2006.
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2020.
Securing the future of US agriculture: The case for investing in new entry sustainable farmers. Elementa - Science of the Anthropocene. 7:ArticleNo.17.
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2019.
Secreted pectin monooxygenases drive plant infection by pathogenic oomycetes. Science. 373:774-779.
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2021.
Second-order analysis of inhomogeneous spatial point processes with proportional intensity functions. Journal of American Statistical Association. 103(482):769-777.
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2008.
Seaweed fertilisation impacts the chemical and isotopic composition of barley: Implications for analyses of archaeological skeletal remains. Journal of Archaeological Science. 104:34-44.
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2019.
Seasonal variation in the C, N and S stable isotope composition of retail organic and conventional Irish beef. Food Chemistry. 106:1299-1305. Abstract
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2008.
Seasonal variability of dry matter content and its relationship with shoot growth and nonstructural carbohydrates. New Phytologist. 180(1):133-142.
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2008.
A seasonal survey of surface water habitats within the River Spey basin, Scotland: major nutrient properties. Aquatic Conservation: Marine and Freshwater Ecosystems. 17(6):565-583.
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2007.
Seasonal regulation of petal number. Plant Physiology. 175:886-903.
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2017.
Seasonal quality assessment of leaves and stems of fodder ligneous species. Notulae Botanicae Horti Agrobotanici Cluj-Napoca. 46:426-434.
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2018.
Seasonal patterns of photochemical capacity and spring phenology reveal genetic differentiation among native Scots pine (Pinus sylvetsris L.) populations in Scotland. Forest Ecology and Management. 262:1020-1029.
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2011.
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2020.
Seasonal nitrous oxide emissions in field soils under soil management of reduced tillage, compost application or organic farming. Agriculture, Ecosystems and Environment. 189:17-180.
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2014.
Seasonal dynamics of the soil microbial community: assimilation of old and young carbon sources in a long-term field experiment as revealed by natural C-13 abundance. European Journal of Soil Science. 67:79-89.
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2016.
Seasonal controls on DOC dynamics in nested upland catchments in NE Scotland. Hydrological Processes. 25:1647-1658.
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2011.
Seasonal changes in pasture biomass, production and offtake under the transhumance system in northern Pakistan. Journal of Arid Environments. 67(4):641-660.
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2006.
Seasonal change is a major driver of soil resistomes at a watershed scale. Isme Communications. 1:ArticleNo.1.
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2021.
Seasonal bryophyte productivity in the sub-Arctic: a comparison with vascular plants. Functional Ecology. 26:365-378.
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2012.
Searching for the origins of bere barley: a geometric morphometric approach to cereal landrace recognition in archaeology. Journal of Archaeological Method and Theory. 26:1125-1142.
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2019.
The search for the meaning of life in soil: an opinion. European Journal of Soil Science. 69:31-38.
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2018.
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2019.
The Scottish revolution? Evaluating the impacts of post devolution land reform Scottish Geographical Journal. 127:17-39.
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2011.
Scottish farmers' intentions to afforest land in the context of farm diversification. Forest Policy and Economics. 78:122-132.
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2017.
Scottish berries - potential for dietary chemoprevention? Scottish Medical Journal. 52:54-54. Abstract
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2007.
Scotland's natural capital asset index: tracking nature's contribution to national wellbeing. Ecological Indicators. 107:ArticleNo.105645.
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2019.
Scotland's hydropower: Current capacity, future potential and the possible impacts of climate change. Renewable and Sustainable Energy Reviews. 52:111-122.
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2015.
Scoping the role of agriculture in sustainable flood management. Land Use Policy. 25(3):351-360.
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2008.
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2017.
The scope of the land-based sector to mitigate climate change in North-east Scotland: opportunities and challenges with particular reference to the role of forests. International Journal of Environment and Sustainable Development.. 11:274-292.
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2012.
The science, policy and practice of nature-based solutions: an interdisciplinary perspective. Science of the Total Environment. 579:1215-1227.
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2017.
Science into practice - how can fundamental science contribute to better management of grasslands for invertebrates? Insect Conservation and Diversity. 5:1-8.
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2012.
School closures as a driver of rural decline in Scotland: a problem in pursuit of some evidence? Scottish Geographical Journal. 131:78-97.
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2015.
Scenario planning: The future of the cattle and sheep industries in Scotland and their resiliency to disease. Preventive Veterinary Medicine. 121:353-364.
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2015.
Scenario planning as communicative action: lessons from participatory exercises conducted for the Scottish livestock industry. Technological Forecasting and Social Change. 114:138-151.
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2017.
Scenario analysis for regional decision-making on sustainable multifunctional land uses. Regional Environmental Change. 14:1357-1371.
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2014.
A scanner system for high-resolution quantification of variation in root growth dynamics of Brassica rapa genotypes. Journal of Experimental Botany. 65:2039-2048.
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2014.
Scaling up of a mechanistic dynamic model in a GIS environment to assess temperate grassland production at the regional scale. Grass and Forage Science. 61(3):315-331.
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2006.
Scaling up and out in runoff process understanding - insights from nested experimental catchment studies. Hydrological Processes - HP Today. 20:2461-2465.
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2006.
Scaling methane emissions in ruminants and global estimates in wild populations. Science of the Total Environment. 579:1572-1580.
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2017.
Scale-dependent effects of coppicing on the species pool of late successional beech forests in the central Apennines, Italy. Applied Vegetation Science. 19:474-485.
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2016.
Scale-dependent assessment of relative disease resistance to plant pathogens. Agronomy. 4:178-190.
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2014.
Scale and spatial structure effects on the outcome of barley cultivar mixture trials for disease control. Field Crops Research. 123:74-79.
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2011.
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. Nucleic Acids Research. 38:1767-1771.
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2010.
Sampling root-respired CO2 in-situ for C-13 measurement. Plant and Soil, 393, 259-271..
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2015.
Sampling plant functional traits: what proportion of the species need to be measured? Applied Vegetation Science. 10(1):91-96.
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2007.
Sampling bias misrepresents the biogeographical significance of constitutive mixotrophs across global oceans. Global Ecology and Biogeography. 28:418-428.
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2019.
Sample size and replication in 2D gel electrophoresis studies. Journal of Proteome Research. 6:2884-2887. Abstract
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2007.
Sample collection protocol effects on quantification of gene expression in potato leaf tissue. Plant Molecular Biology Reporter. 29:369-378.
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2011.
Salicylic acid confers resistance to a biotrophic rust pathogen, Puccinia substriata, in pearl millet (Pennisetum glaucum). Molecular Plant Pathology. 10:291-304.
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2009.
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2016.
Safety testing of GM-rice expressing PHA-E lectin using a new animal test design. Food and Chemical Toxicology. 45:364-377. Abstract
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2007.
Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience. Conservation Letters. Published online..
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2020.
Safeguarding freshwater life beyond 2020: Recommendations for the new global biodiversity framework from the European experience. Conservation Letters. 14:ArticleNo.e12771.
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2021.
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2012.
The SAFE FOODS risk analysis framework suitable for GMOs? A case study. Food Control. 21:1662-1676.
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2010.
The SAFE FOODS framework for improved risk analysis of foods. Food Control. 21:1566-1587.
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2010.
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2016.
Ryegrass root and shoot residues differentially affect short-term priming of soil organic matter and net soil C-balance. European Journal of Soil Biology. 93:ArticleNo.103096.
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2019.
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2013.
RXLR effector AVR2 up-regulates a brassinosteroid responsive bHLH transcription factor to suppress immunity. Plant Physiology. 174:356-369.
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2017.
Rural geographies in the wake of non-representational theories. Geography Compass. :ArticleNo.e12446.
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2019.
Rural gentrification in Russia: Renegotiating identity, alternative food production and social tensions in the countryside. Journal of Rural Studies. 42:154-165.
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2015.
Runoff processes, stream water residence times and controlling landscape characteristics in a mesoscale catchment: an initial evaluation. Journal of Hydrology. 325(1-4):197-221.
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2006.
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2012.
Rufous-legged owl (Strix rufipes) and Austral pygmy owl (Glaucidium nanum) stand use in a gradient of disrupted and old growth Andean temperate forests, Chile. Studies on Neotropical Fauna and Environment. 47:33-40.
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2012.
Rubus fruit juices affect lipid peroxidation in a Drosophila melanogaster model in vivo.. Journal of Agricultural and Food Chemistry. 53:7728-7733. Abstract
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2005.
Rubus chlorotic mottle virus, a new Sobemovirus infecting raspberry and bramble. Virus Research. 139:10-13. Abstract
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2009.
Rubisco: still the most abundant protein of Earth? New Phytologist. 198:1-3.
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2013.
The rsmS (ybaM) mutation causes bypass suppression of the RsmAB post-transcriptional virulence regulation system in enterobacterial phytopathogens. Scientific Reports. 9:ArticleNo.4525.
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2019.
The rpg4-mediated resistance to wheat stem rust (Puccinia graminis) in barley (Hordeum vulgare) requires Rpg5 gene, a second NBS-LRR gene, and an actin depolymerization factor. Molecular Plant-Microbe Interactions. 26:407-418.
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2013.
Rowanberry phenolics: compositional analysis and bioactivites. Journal of Agricultural and Food Chemistry. 58:11985-11992.
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2010.
Routes to genetic gain in potato. Nature Plants. 4:631-632.
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2018.
Rotting softly and stealthily. Current Opinion in Plant Biology. 8:424-429.
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2005.
Roots, rhizosphere and soil: the route to a better understanding of soil science? European Journal of Soil Science. 57:2-12. Abstract
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2006.
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2021.
Roots affect the response of heterotrophic soil respiration to temperature in tussock grass microcosms. Annals of Botany. 110:253-258.
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2012.
Root-soil friction: quantification provides evidence for measurable benefits for manipulation of root-tip traits. Plant Cell and Environment. 36:1085-1092.
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2013.
Root-shoot growth responses during interspecific competition quantified using allometric modelling. Annals of Botany. 106(6):921-926.
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2010.
Root-lesion nematodes of potato: current status of diagnostics, pathogenicity and management. Plant Pathology, Published online..
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2020.
Root traits predict decomposition across a landscape-scale grazing experiment. New Phytologist. 2013:851-862.
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2014.
Root traits benefitting crop production in environments with limited water and nutrient availability. Annals of Botany. 124:883-890.
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2019.
Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science. 12:474-481. Abstract
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2007.
Root responses to soil physical conditions; growth dynamics from field to cell. Journal of Experimental Botany. 57:437-447. Abstract
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2006.
Root responses to cadmium in the rhizosphere: a review. Journal of Experimental Botany. 62:21-37.
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2011.
Root phenomics of crops - opportunities and challenges. Functional Plant Biology. 36:922-929.
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2009.
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2016.
Root herbivores drive changes to plant primary chemistry, but root loss is mitigated under elevated atmospheric CO2. Frontiers in Plant Science. 7
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2016.
Root hairs improve root penetration, root-soil contact, and phosphorus acquisition in soils of different strength. Journal of Experimental Botany. 64:3711-3721.
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2013.
Root hairs aid soil penetration by anchoring the root surface to pore walls. Journal of Experimental Botany. 67:1071-1078.
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2016.
Root hair mutations displace the barley rhizosphere microbiota. Frontiers in Plant Science.. 8:ArticleNo.1094.
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2017.
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2014.
Root hair abundance impacts cadmium accumulation in Arabidopsis thaliana shoots. Annals of Botany. 122:903-914.
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2018.
Root growth models: Towards a new generation of continuous approaches. Journal of Experimental Botany. 61:2131-2143.
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2010.
Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency. Journal of Plant Nutrition and Soil Science. 174:3-11.
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2011.
Root exudation from Hordeum vulgare in response to localised nitrate supply. Journal of Experimental Botany. 57(10):2413-2420.
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2006.
Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits. Journal of Experimental Botany. 62:59-68.
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2011.
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2013.
Root elongation is restricted by axial but not by radial pressures: so what happens in field soil? Plant and Soil. 360:15-18.
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2012.
Root development impacts on the distribution of phosphatase activity: Improvements in quantification using soil zymography. Soil Biology and Biochemistry. 116:158-166.
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2018.
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2019.
Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize. FEMS Microbiology Ecology. 54:123-130. Abstract
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2005.
Root biomechanical properties during establishment of woody perennials. Ecological Engineering. Published online..
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2017.
Root and foot rot of Lantana caused by Phytophthora cryptogea. Plant Disease. 89:909-909. Abstract
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2005.
Root anatomical phenes predict root penetration ability and biomechanical properties in maize (Zea Mays). Journal of Experimental Botany. 66:3151-3162.
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2015.
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2019.
The role of zeta potential in the adhesion of E. coli to suspended intertidal sediments. Water Research. 142:159-166.
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2018.
The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology. 257:696-703.
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2009.
The role of Variovorax and other Comamonadaceae in sulphur transformations by microbial wheat rhizosphere communities exposed to different sulphur fertilization regimes. Environmental Microbiology. 10(6):1486-1500.
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2008.
The role of trust in the resolution of conservation conflicts. Biological Conservation. 195:196-202.
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2016.
The role of the potato (Solanum tuberosum L.) CCD8 gene in stolon and tuber development. New Phytologist. 198:1108-1120.
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2013.
The role of the plant nucleolus in pre-mRNA processing. Current Topics in Microbiology and Immunology. 326:291-311.
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2008.
Role of the methionine cycle in the temperature-sensitive responses of potato plants to potato virus Y. Molecular Plant Pathology. 22:77-91.
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2021.
The role of the Cucumber mosaic virus 2b protein in viral movement and symptom induction. Molecular Plant-Microbe Interactions. 22:642-654. Abstract
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2009.
The role of secretion systems and small molecules in soft-rot enterobacteriaceae pathogenicity. Annual Review of Phytopathology. 50:425-449.
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2012.
The role of rainfall intensity and soil in determining rates of flow through cryoturbated chalk. Pakistan Journal of Science and Industrial Research. 51:235-241.
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2008.
The role of quantitative cross-case analysis in understanding tropical smallholder farmers’ adaptive capacity to climate shocks. Environmental Research Letters. 14:ArticleNo.125013..
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2019.
The role of parental behaviour for the development of behaviour specific environmental norms - the example of recycling and re-use behaviour. Journal of Environmental Psychology. 32:277-284.
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2012.
The role of nitrogen deposition in widespread plant community change across semi-natural habitats. Ecosystems. 17:864-877.
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2014.
The role of natural heritage in rural development: an analysis of economic linkages in Scotland. Journal of Rural Studies. 22(4):469-484.
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2006.
The role of mosses in carbon uptake and partitioning in arctic vegetation. New Phytologist. 199:163-175.
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2013.
The role of mixotrophic protists in the biological carbon pump. Biogeosciences. 11:995-1005.
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2014.
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2016.
Role of microbial communities in conferring resistance and resilience of soil carbon and nitrogen cycling following contrasting stresses. European Journal of Soil Biology. 104:ArticleNo.103308.
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2021.
The role of map-based environmental information in supporting integration between river basin planning and spatial planning. Environmental Science and Policy. 30:81-89.
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2013.
Role of lipopolysaccharide and biofilm formation during endophytic colonization of rice (Oryza sativa L.) and nodulation of Sesbania cannabina by Rhizodium sp. IRBG74. Journal of Experimental Botany. 67:5869-5884.
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2016.
The role of landscape in regulating (Ir) responsible conduct: moral geographies of the ‘proper control’ of dogs. Landscape Research. 40:39-56.
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2015.
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2007.
The role of groundwater characteristics in catchment recovery from nitrate pollution. Hydrology Research. 43:560-575.
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2012.
The role of gluconate production by Pseudomonas spp. in the mineralization and bioavailability of calcium-phytate to Nicotiana tabacum. Canadian Journal of Microbiology. 61:885-897.
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2015.
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2006.
Role of fungi in the biochemical fate of depleted uranium. Current Biology. 18(9):R375-R377.
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2008.
The role of free radicals in brassica-induced anaemia of sheep: an ESR spin trapping study. Asian-Australiasian Journal of Animal Sciences. 25:1404-1410.
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2012.
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2007.
The role of effectors in non host resistance to filamentous plant pathogens. Frontiers in Plant Science. 5
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2014.
The role of ecosystems and their management in regulating climate, and soil, water and air quality. Journal of Applied Ecology. 50:812-829.
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2013.
The role of deer as vehicles to move ticks, Ixodes ricinus, between contrasting habitats. International Journal for Parasitology. 40(9):1013-1020.
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2010.
The role of cultural ecosystem services in landscape management and planning. Current Opinion in Environmental Sustainability. 14:28-33.
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2015.
The role of catchment characteristics in determining surface water nitrogen in four upland regions in the UK. Hydrology and Earth System Sciences. 11(1):356-371.
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2007.
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2012.
The role of APETALA1 in petal number robustness. eLife. 7:ArticleNo.e39399.
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2018.
The role of agronomic research in climate change and food security policy. Agriculture, Ecosystems and Environment. 126:4-12. Abstract
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2008.
The role of 'omics' technologies in food safety assessment. Food Control. 21:1601-1610.
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2010.
A role for symplastic gating in the control of the potato tuber life cycle. Plant Signaling and Behaviour. 3:27-29. Abstract
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2008.
A role for shoot protein in shoot-root dry matter allocation in higher plants. Annals of Botany. 97:3-10. Abstract
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2006.
Rock building fungi. Geomicrobiology Journal. 27(6-7):624-629.
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2010.
A robust statistical method for association-based eQTL analysis. PLoS ONE. 6:e23192.
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2011.
Robust detection and genotyping of single feature polymorphisms from gene expression data. PLoS Computational Biology. 5:-e1000317.
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2009.
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2013.
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2011.
RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family. Plant Biotechnology Journal.. 17:594-607.
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2019.
RNAi and functional genomics in plant parasitic nematodes. Annual Review of Phytopathology. 47:207-232.
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2009.
RNA2 of TRV SYM breaks the rules for tobravirus genome structure. Virus Research. 160:435-438.
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2011.
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2019.
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2016.
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2013.
RNA-based technologies for engineering plant virus resistance. Plants. 10:ArticleNo.82.
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2021.
RNA- and DNA-based profiling of soil fungal communities in a native Australian eucalypt forest and adjacent Pinus elliotti plantation. Soil Biology and Biochemistry. 39(12):3108-3114.
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2007.
RNA sequence analysis of diseased groundnut (Arachis hypogaea) reveals the full genome of groundnut rosette assistor virus (GRAV). Virus Research. 277:ArticleNo.197837.
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2020.
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2008.
RNA function and phosphorus use by photosynthetic organisms. Frontiers in Plant Science, 4. Published online.. 4
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2013.