Publications list
Trajectories toward maximum power and inequality in resource distribution networks. PLoS ONE. 15:ArticleNo.e0-229956.
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2020.
Contrasting nutrient-disease relationships: Potassium gradients in barley leaves have opposite effects on two fungal pathogens with different sensitivities to jasmonic acid. Plant Cell and Environment. 41:2357-2372.
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2018.
Arbuscular mycorrhizal fungal communities in plant roots are not random assemblages. FEMS Microbiology Ecology. 78:103-115.
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2011.
Influence of hydrology and seasonality on long-term DOC exports from three contrasting upland catchments. Biogeochemistry. 90(1):93-113.
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2008.
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2013.
Linking biosensor responses to Cd, Cu and Zn partitioning in soils. Environmental Pollution. 142(3):493-500.
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2006.
Seasonal controls on DOC dynamics in nested upland catchments in NE Scotland. Hydrological Processes. 25:1647-1658.
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2011.
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2011.
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2017.
Measurement of soil characteristics for forensic applications. Surface and Interface Analysis. 42(5):363-377.
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2010.
Does biotechnology have a role in the promotion of underutilised crops? Food Policy. 34:319-328.
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2009.
Barley: a translational model for adaptation to climate change. New Phytologist. 206:913-931.
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2015.
Integrative management to mitigate diffuse pollution in multi-functional landscapes. Current Opinions in Environmental Sustainability. 2(5-6):375-382.
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2010.
The biogeochemical reactivity of suspended particulate matter at nested sites in the Dee basin, NE Scotland. Science of the Total Environment. 434:159-170.
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2012.
Discussion in response to Knut Bjorlykke regarding JMPG_1376 "Open-System Chemical Behavior In Deep Wilcox Group Mudstones, Texas Gulf Coast, USA". Marine and Petroleum Geology. 28:1383-1384.
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2011.
Open-system chemical behavior in deep Wilcox Group mudstones, Texas Gulf. Marine and Petroleum Geology.. 27(9):1804-1818.
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2010.
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2021.
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2010.
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2008.
Insights into the evolution of multicellularity from the sea lettuce genome. Current Biology. 28:2921-2933.
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2018.
"Health in" and "Health of" social-ecological systems: a practical framework for the management of healthy and resilient agricultural and natural ecosystems. Frontiers in Public Health. 8:ArticleNo.616328.
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2021.
Genetic dissection of quantitative and qualitative traits using a minimum set of barley recombinant chromosome substitution lines. BMC Plant Biology. 18:ArticleNo.340.
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2018.
Morphological and genetic characterisation of the root system architecture of selected barley recombinant chromosome substitution lines using an integrated phenotyping approach. Journal of Theoretical Biology. 447:84-97.
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2018.
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2014.
Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback. Journal of Bacteriology. 192:2936-2937.
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2010.
Mesorhizobium carmichaelinearum sp. nov., isolated from Carmichaelineae spp. root nodules. International Journal of Systematic and Evolutionary Microbiology. 69:146-152.
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2019.
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2016.
Analyzing lateral root development: how to move forward. The Plant Cell. 24:15-20.
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2012.
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2019.
Analysis of time series data on agroecosystem vegetation using predictive clustering trees. Ecological Modelling. 222:2524-2529.
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2011.
Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25(1):66-77.
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2008.
Potential of multi-objective models for risk-based mapping of the resilience characteristics of soils: demonstration at a national level. Soil Use and Management. 25:66-77.
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2009.
Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
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2008.
Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348(3-4):431-441.
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2008.
Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough. Journal of Hydrology. 348:431-441. Abstract
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2008.
A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants. Current Biology. 22:1595-1600.
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2012.
Data and models for exploring sustainability of human well-being in global environmental change. European Physical Journal Special Topics.. 214:519-545.
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2012.
Defence response of Sitka spruce before and after inoculation with Heterobasidion annosum: 1H NMR fingerprinting of bark and sapwood metabolites. Analytical and Bioanalytical Chemistry. 402:3333-3344.
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2012.
Inter-population differences in the tolerance of a marsupial folivore to plant secondary metabolites. Oecologia.. 161(3):539-548.
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2009.
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2010.
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2009.
A simple integrative assay to quantify nutritional quality for browsing herbivores. Oecologia. 156(1):107-116.
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2008.
The presence of sheep leads to increases in plant diversity and reductions in the impact of deer on heather. Journal of Applied Ecology. 48:1269-1277.
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2011.
Introduction to biohydrology. BiologiaBiohydrology, Special Issue, Biologia 61/Supplement 19. 61, Suppl 19:223-224. Abstract
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2006.
Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds. Proceedings of the National Academy of Sciences of the United States of America. 117:2551-2559.
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2020.
Microbial diversity drives multifunctionality in terrestrial ecosystems. Nature Communications. 7
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2016.
It is elemental: soil nutrient stoichiometry drives bacterial diversity. Environmental Microbiology. 19:1176-1188.
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2017.
Lack of functional redundancy in the relationship between microbial diversity and ecosystem functioning. Journal of Ecology. 104:936-946.
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2016.
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2019.
Microbial soil community analyses for forensic science: application to a blind test. Forensic Science International. 270:153-158.
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2017.
Whole stream phosphorus cycling: testing methods to assess the effect of saturation of sorption capacity on nutrient uptake length measurements. Water Research. 42(10-11):2507-2516.
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2008.
Impact of warming on CO2 emissions from streams countered by aquatic photosynthesis. Nature Geoscience. 9:758-761.
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2016.
Stream macroinvertebrates and carbon cycling in tangled food webs. Ecosystems. Published online..
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2021.
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2014.
River macrophyte indices: not the Holy Grail!. Freshwater Biology. 57:1745-1759.
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2012.
Hydrological pulses and burning of dissolved organic carbon by stream respiration. Limnology and Oceanography. 64:406-421.
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2019.
Temperature and the metabolic balance of streams. Freshwater Biology. 56:1106-1121.
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2011.
Distribution of aquatic plants in the Northern Vosges rivers: implications for biomonitoring and conservation. Aquatic Conservation: Freshwater and Marine Ecosystem. 18:619-632.
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2008.
Aquatic macrophytes as bioindicators of carbon dioxide in groundwater fed rivers. The Science of the Total Environment. 407(16):4752-4763.
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2009.
Stream metabolism and the open diel oxygen method: principles, practice and perspectives. Limnology and Oceanography: Methods. 13:356-374.
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2015.
Macroinvertebrate abundance and proportion of trait categories in river biotopes across England and Wales. PANGEAE database Supplement to: Demars, B.O.L.; Kemp, J.L.; Friberg, N.; Usseglio-Polatera, P.; Harper, D.M. (2012): Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators.. 23:301-311.
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2012.
Tissue nutrient concentrations in freshwater aquatic macrophytes: high inter-taxon differences and low phenotypic response to nutrient supply. Freshwater Biology. 52(22):2073-2086.
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2007.
Stream hydraulics and temperature determine the metabolism of geothermal Icelandic streams. Knowledge Management of Aquatic Ecosystem. 402:17pp.
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2011.
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2013.
Tissue nutrient concentrations in aquatic macrophytes: comparison across biophysical zones, surface water habitats and plant life forms. Chemistry and Ecology. 24(6):413-422.
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2008.
Distribution of aquatic macrophytes in contrasting river systems: a critique of compositional-based assessment of water quality. The Science of the Total Environment. 407(2):975-990.
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2009.
Linking biotopes to invertebrates in rivers: biological traits, taxonomic composition and diversity. Ecological Indicators. 23:301-311.
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2012.
A seasonal survey of surface water habitats within the River Spey basin, Scotland: major nutrient properties. Aquatic Conservation: Marine and Freshwater Ecosystems. 17(6):565-583.
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2007.
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2013.
Identification and characterisation of a hyper-variable apoplastic effector gene family of the potato cyst nematodes. PLoS Pathogens. 10:ArticleNo.e1004391.
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2014.
A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris L. Medic (shepherd's purse). Annals of Botany. 109:419-427.
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2012.
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2015.
Long-term effect of re-vegetation on the microbial community of a severely eroded soil in sub-tropical China. Plant and Soil. 328:447-458.
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2010.
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2013.
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2014.
GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia. 48:331-347.
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2018.
GrassPlot - a database of multi-scale plant diversity in Palaearctic grasslands. Phytocoenologia. 48:331-347.
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2018.
A novel method for sampling bacteria on plant root and soil surfaces at the microhabitat scale. Journal of Microbiological Methods. 75:12-18. Abstract
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2008.
Microbial responses to carbon and nitrogen supplementation in an Antarctic dry valley soil. Soil Biology and Biochemistry. 25:55-61.
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2013.
The effects of livestock grazing on foliar arthropods associated with bird diet in upland grasslands of Scotland. Journal of Applied Ecology. 45:279-287.
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2008.
Linking rhizoplane pH and bacterial density at the microhabitat scale. Journal of Microbiological Methods. 76:101-104.
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2009.
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2012.
Genetic resource of European small berries according to Genberry. Sodinninkyste ir Darzininkyste. 27:371-377.
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2008.
Comparison of three alternative methods for analysis of equine faecal egg count reduction test data.. Preventive Veterinary Medicine. 93:316-323.
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2010.
Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method. Veterinary Parasitology. 188:120-126.
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2012.
Thermophilic versus mesophilic dark fermentation in xylose-fed fluidised bed reactors: Biohydrogen production and active microbial community. International Journal of Hydrogen Energy. 43:5473-5485.
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2018.
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2015.
Experimentally altered rainfall regimes and host root traits affect grassland arbuscular mycorrhizal fungal communities. Molecular Ecology. 27:2152-2163.
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2018.
Early-life residential exposure to soil components in rural areas and childhood respiratory health and allergy. Science of the Total Environment. 466-467:338-344.
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2014.
Early childhood wheezing symptoms in relation to plasma selenium in pregnant mothers and neonates. Clinical and Experimental Allergy. 37:1000-1008.
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2007.
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2012.
Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India. Scientific Reports. 8:ArticleNo.4429.
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2018.
Use of wild genotypes in breeding program increases strawberry fruit sensorial and nutritional quality. Journal of Agricultural and Food Chemistry. 62:3944-3953.
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2014.
Phytophthora captiosa sp. nov and Phytophthora fallax sp. nov causing crown dieback of Eucalyptus in New Zealand. Mycological Research. 110:393-404. Abstract
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2006.
A comparison of ecosystem services delivered by 11 long-term monitoring sites in the UK environmental change network. Environmetrics. 22:639-648.
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2011.
Teladorsagia circumcincta: The transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro. Experimental Parasitology. 127:351-356.
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2011.
What agricultural practices are most likely to deliver ‘sustainable intensification’ in the UK? Food and Energy Security. 8:ArticleNo.e00148.
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2019.
What agricultural practices are most likely to deliver ‘sustainable intensification’ in the UK? Food and Energy Security. 8:ArticleNo.e00148.
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2019.
What agricultural practices are most likely to deliver ‘sustainable intensification’ in the UK? Food and Energy Security. Published online..
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2018.
Can root electrical capacitance be used to predict root mass in soil? Annals of Botany. 112:457-464.
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2013.
A new physical interpretation of plant root capacitance. Journal of Experimental Botany. 63:6149-6159.
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2012.
No recombination detected between potyvirus mixed infections and between potyvirus derived transgenes and heterologous challenging potyviruses. Environmental Biosafety Research. 6:207-218. Abstract
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2007.
Transcriptome analysis of potato tubers - effects of different agricultural practices. Journal of Agricultural and Food Chemistry. 57:1612-1623. Abstract
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2009.
The identification and interpretation of differences in the transcriptomes of organically and conventionally grown potato tubers. Journal of Agricultural and Food Chemistry. 60:2090-2101.
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2012.
Growth and photoregulation dynamics of the picoeukaryote Pelagomonas calceolata in fluctuating light. Limnology and Oceanography. 54:823-836.
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2009.
Using isotopes to understand the evolution of water ages in disturbed mixed land-use catchments. Hydrological Processes. 34:972-990.
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2020.
Opportunities and challenges in using catchment-scale storage estimates from cosmic ray neutron sensors for rainfall-runoff modelling. Journal of Hydrology. 586:ArticleNo.124878.
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2020.
Identification of the phenolic components in Bulgarian raspberry cultivars by LC-ESI-MSn. International Journal of Agricultural Science Research. 3:127-137.
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2013.
Patterns of bird functional diversity on land-bridge island fragments. Journal of Animal Ecology. 82:781-790.
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2013.
Landscapes of challenge and change: contested views of the Cairngorms National Park. Landscape Research. 37:451-466.
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2012.
The influence of public funding on community-based sustainability projects in Scotland. Environmental Innovation and Societal Transition. 29:25-33.
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2018.
Community, cooperation and conflict: negotiating the social wellbeing benefits of urban greenspace experience. Landscape and Urban Planning. 112:1-9.
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2013.
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2020.
Creating a sexual self in heteronormative space: Integrations and imperatives amongst spiritual seekers at the Findhorn Community. Sociological Research Online. 16:Article7.
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2011.
You again - what are you researching this time? can you ever "leave the field"? Fieldwork in Religion. 7:164-179.
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2012.
Discursive claims to knowledge: The challenge of delivering public policy objectives through new environmental governance arrangements. Journal of Rural Studies. 37:1-9.
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2015.
Making real options analysis more accessible for climate change adaptation. An application to afforestation as a flood management measure in the Scottish Borders. Journal of Environmental Management. 245:338-347.
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2019.
The impact of flood action groups on the uptake of flood management measures. Climatic Change. 138:471-489.
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2016.
Measurement at the field scale of soil . Rapid Communications in Mass Spectrometry. 24:511-518.
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2010.
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2021.
Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry. Journal of Agricultural and Food Chemistry. 60:5360-5366.
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2012.
Effects of juice matrix and pasteurization on stability of black currant anthocyanins during storage. Journal of Food Science. 82:44-52.
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2017.
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2012.
Lipophilic components in black currant seed and pomace extracts. European Journal of Lipid Science and Technology. 114:575-582.
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2012.
Phytochemical diversity in tubers of potato cultivars and landraces using a GC-MS metabolomics approach. Journal of Agricultural and Food Chemistry. 56:10280-10291. Abstract
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2008.
A metabolomics study of cultivated potato (Solanum tuberosum) groups, Andigena, Phureja, Stenotomum and Tuberosum using gas chromatography-mass spectrometry. Journal of Agricultural and Food Chemistry. 58:1214-1223.
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2010.
Induced variations in Brassinosteroid genes define barley height and sturdiness, and expand the green revolution genetic toolkit. Plant Physiology. 166:1912-1927.
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2014.
Blackcurrant reversion virus: validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants. Journal of Berry Research. 1:201-208.
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2011.
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2018.
Phytophthora foliorum sp. nov., a new species causing leaf blight of azalea. Mycological Research. 110:1309-1322. Abstract
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2006.
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2016.
A novel molecular approach for rapid assessment of soil nematode assemblages û variation, validation and potential applications. Methods in Ecology and Evolution. 3:12-23.
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2012.
Greater coverage of the phylum Nematoda for SSU rDNA studies. Biology and Fertility of Soils. 47:333-339.
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2011.
DNA extraction from soil nematodes for multi-sample community studies. Applied Soil Ecology. 38:20-26. Abstract
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2008.
Improved soil fertility from compost amendment increases root growth and reinforcement of surface soil on slopes. Ecological Engineering.. 71:458-465.
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2014.
Putting the eco back in ecotourism. Animal Conservation. 14:325-327.
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2011.
An assessment of the performance of the PLUS+ tool in supporting the evaluation of Water framework Directive compliance in Scottish standing waters. International Journal of Environmental Research and Public Health. 17:ArticleNo.391.
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2020.
Morphological clasification of plant cell deaths. Cell Death and Differentiation. 18:1241-1246.
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2011.
Root system architecture: opportunities and constraints for genetic improvement of crops. Trends in Plant Science. 12:474-481. Abstract
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2007.
Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil. New Phytologist. 186:934-946.
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2010.
Reply to comment on: Vegetation burning for game management in the UK uplands is increasing and overlaps spatially with soil carbon and protected areas. Biological Conservation. 195:295-296.
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2016.
Vegetation burning for game management in the UK uplands is increasing and overlaps spatially with soil carbon and protected areas. Biological Conservation. 191:243-250.
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2015.
The influence of weather conditions during gestation on life histories in a wild Arctic ungulate. Proceedings of the Royal Society, B. Published online..
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2016.
The influence of weather conditions during gestation on life histories in a wild Arctic ungulate. Proceedings of the Royal Society, B.. 283:ArticleNo.20161760.
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2016.
Late production of CXCL8 in ruminant oro-nasal turbinate cells in response to Chlamydia abortus infection. Veterinary Immunology and Immunopathology. 168:97-102.
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2015.
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2006.
Intake and productivity of lambs grazing leafy or stemmy forage rape and the effect of energy or protein supplements. Australian Journal of Experimental Agriculture. 46(7):763-769.
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2006.
The influence of herbage mass and supplementary feeding on nutrient flows and animal performance in grazing, lactating ewes. Journal of Agricultural Science. 150:644-662.
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2012.
Transparent soil microcosms allow 3D spatial quantification of soil microbiological processes in vivo. Plant Signaling and Behavior. 9
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2014.
Transparent soil for imaging the rhizosphere. PLoS ONE. 7:e44276.
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2012.
Challenges and opportunities for quantifying roots and rhizosphere interactions through imaging and image analysis. Plant, Cell and Environment. 38:1213-1232.
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2015.
The imprint of the geographical, evolutionary and ecological context on species-area relationships. Ecology Letters. 9(2):215-227.
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2006.
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2015.
Tenancy in Norwegian agriculture. Land Use Policy. 27(3):946-956.
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2010.
Natural variation in meiotic recombination rate shapes introgression patterns in intraspecific hybrids between wild and domesticated barley. New Phytologist, Published online..
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2020.
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2013.
Postprandial cell defense system responses to meal formulations: Stratification through gene expression profiling. Molecular Nutrition and Food Research. 58:2066-2079.
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2014.
Phase and structural features of tubular halloysite (7 angstrom). Clay Minerals. 53:691-720.
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2018.
Metabolic responses of eukaryotic microalgae to environmental stress limit the ability of FT-IR spectroscopy for species identification. Algal Research- Biomass Biofuels and Bioproducts. 11:148-155.
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2015.
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2008.
Expression quantitative trait loci analysis in plants. Plant Biotechnology Journal. 8:10-27.
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2010.
Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley. Theoretical and Applied Genetics. 117:261-272. Abstract
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2008.
Exploiting induced variation to dissect quantitative traits in barley. Biochemical Society Transactions. 38:683-688.
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2010.
An atlas of gene expression from seed to seed through barley development. Functional & Integrative Genomics. 6:202-211. Abstract
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2006.
Genetic dissection of barley morphology and development. Plant Physiology. 155:617-627.
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2011.
Phytophthora infestans RXLR effector AVR1 interacts with exocyst component Sec5 to manipulate plant immunity. Plant Physiology. 169:1975-1990.
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2015.
Physiological responses of date palm (Phoenix dactylifera) seedlings to seawater and flooding. New Phytologist. 229:3318-3329.
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2021.
Physiological responses of date palm (Phoenix dactylifera) seedlings to acute ozone exposure at high temperature. Environmental Pollution. 242:905-913.
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2018.
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2008.
Comparative transcriptome profiling reveals compatible and incompatible patterns of potato toward phytophthora infestans. G3- Genes Genomes Gemnetics. 10:623-634.
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2020.
The weight-focused forms of self-criticising/attacking and self-reassuring scale: confirmatory factor analysis and associations with control, loss of control of eating and weight in overweight and obese women. Psychology and Psychotherapy-Theory Research and Practice. 92:539-553.
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2019.
Molecular diagnosis of trichodorid species from Portugal. Plant Pathology. 60:586-594.
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2011.
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2010.
Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA. PLoS Genetics. 9:e1003867.
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2013.
Analysis of survival and hatching transcriptomes from potato cyst nematodes, Globodera rostochiensis and G. pallida. Science Reports. 7:ArticleNo.3882.
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2017.
Tackling wicked environmental problems: The discourse and its influence on practice in Scotland. Landscape and Urban Planning. 154:44-56.
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2016.
Tackling wicked environmental problems: The discourse and its influence on practice in Scotland. Landscape and Urban Planning. Published online..
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2016.
Risk amplification as social attribution. Risk Management. 15:132-153.
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2013.
Scenario planning as communicative action: lessons from participatory exercises conducted for the Scottish livestock industry. Technological Forecasting and Social Change. 114:138-151.
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2017.
Can policy be risk-based? The cultural theory of risk and the case of livestock disease containment Sociologia Ruralis. 55:379-399.
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2015.
Metabolic engineering of high carotenoid potato tubers containing enhanced levels of beta-carotene and lutein. Journal of Experimental Botany. 56:81-89. Abstract
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2005.
Agrobacterium-mediated transformation of Solanum phureja. Plant Cell Reports. 24:10-14. Abstract
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2005.
The impact of home storage conditions on the accumulation of acrylamide precursors in potato tubers. Annals of Applied Biology. 178:304-314.
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2021.
Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes. Journal of Experimental Botany. 59:4219-4231. Abstract
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2008.
BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
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2018.
BacHBerry: BACterial Hosts for production of Bioactive phenolics from bERRY fruits. Phytochemistry Reviews. 17:291-326.
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2018.
Weak and variable relationships between environmental severity and small-scale co-occurrence in alpine plant communities. Journal of Ecology. 95(6):1284-1295.
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2007.
Compositional data analysis in time-use epidemiology: what, why, how. International Journal of Environmental Research and Public Health. 17:ArticleNo.2220.
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2020.
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2006.
How does pattern of feeding and rate of nutrient delivery influence conditioned food preferences? Oecologia. 153(3):617-624.
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2007.
Transhumance livestock production in the Northern Areas of Pakistan: nutritional inputs and productive outputs. Agriculture, Ecosystems and Environment. 117(2-3):195-204.
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2006.
How do herbivores trade off the positive and negative consequences of diet selection decisions? Animal Behaviour. 71(1):93-99.
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2006.
Human colonic microbiota associated with diet, obesity and weight loss. International Journal of Obesity. 32:1720-1724.
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2008.
Microbial responses to the erosional redistribution of soil organic carbon in arable fields. Soil Biology and Biochemistry. 60:195-201.
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2013.
Recent trends in water quality in an agricultural catchment in Eastern Scotland: elucidating the roles of hydrology and land use. Environmental Science: Processes and Impacts. 16:1659-1675.
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2014.
Interpretation of homogeneity in &18O signatures of stream water in a nested sub-catchment system in north east Scotland. Hydrological Processes. 22:4767-4782.
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2008.
The role of groundwater characteristics in catchment recovery from nitrate pollution. Hydrology Research. 43:560-575.
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2012.
Capability and limitations of a simple grid-based model for simulating land use influences on stream nitrate concentrations. Journal of Hydrology. 507:110-123.
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2013.
Relationships between climate, water resources, land use and diffuse pollution and the significance of uncertainty in climate change. Journal of Hydrology. 434:19-35.
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2012.
Assessing the value of Cl- and d18O data in modelling the hydrological behaviour of a small upland catchment in northeast Scotland. Hydrology Research. 39(5-6):337-358.
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2009.