Publications list
RLP/K enrichment sequencing; a novel method to identify receptor-like protein (RLP) and receptor-like kinase (RLK)genes. New Phytologist. Published online..
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2020.
Riverbeds demarcate distinct conservation units of the radiated tortoise (Geochelone radiata) in southern Madagascar. Conservation Genetics. 8(4):797-807.
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2007.
A river water pollution model for assessment of best management practices for livestock farming. Biosystems Engineering. 99(2):292-303.
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2008.
River sediments provide a link between catchment pressures and ecological status in a mixed land use Scottish river system. Water Research. 41(12):2803-2815.
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2007.
River phosphorus cycling: separating biotic and abiotic uptake during short-term changes in sewage effluent loading. Water Research.. 44(15):4425-4436.
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2010.
River macrophyte indices: not the Holy Grail!. Freshwater Biology. 57:1745-1759.
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2012.
River basin management, development planning, and opportunities for debate around limits to growth. Journal of Hydrology. 519:2624-2631.
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2014.
A risk-based approach for developing standards for irrigation with reclaimed water. Water Research. 126:372-384.
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2017.
Risk perception - Issues for flood management in Europe. Natural Hazards and Earth System Sciences. 12:2299-2309.
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2012.
The risk of peat erosion from climate change: land management combinations: an assessment with bayesian belief networks. Human and Ecological Risk Assessment. 16(5):962-976.
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2010.
Risk of erosion in peat soils - an investigation using Bayesian belief networks. Soil Use and Management. 27:538-549.
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2011.
Risk estimation and annual fluxes of emerging contaminants from a Scottish priority catchment to the estuary and North Sea. Environmental Geochemistry and Health. 40:1987-2005.
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2018.
Risk assessments for quality-assured, source-segregated composts and anaerobic digestates for a circular bioeconomy in the UK. Environment International. 127:253-266.
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2019.
Risk assessment of the use of PAS100 green composts in sheep and cattle production in Scotland. Waste Management. 32:117-130.
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2012.
Risk amplification as social attribution. Risk Management. 15:132-153.
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2013.
Rising water temperatures alter lipid dynamics and reduce N-3 essential fatty acid concentrations in Scenedesmus obliquus (Chlorophyta). Journal of Phycology. 47:763-774.
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2011.
Rising water temperatures alter lipid dynamics and reduce N-3 essential fatty acid concentrations in Scenedesmus obliquus (chlorophyta). Journal of Phycology. 47:763-764.
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2011.
Rising temperatures reduce global wheat production. Nature Climate Change. 5:143-147.
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2015.
The rise and rise of halloysite. Clay Minerals. 51:303-308.
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2016.
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2015.
Riparian field margins: their potential to enhance biodiversity in intensively managed grasslands. Insect Conservation and Diversity. 5:86-94.
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2012.
Riparian field margins: can they enhance the functional structure of ground beetle (Coleoptera: Carabidae) assemblages in intensively managed grassland landscapes? Journal of Applied Ecology. 49:1384-1395.
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2012.
Riparian buffer strips as a multifunctional management tool in agricultural landscapes: introduction. Journal of Environmental Quality. 41:297-303.
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2012.
Rigorous 3D change determination in Antarctic Peninsula glaciers from stereo WorldView-2 and archival aerial imagery. Remote Sensing of Environment. 205:18-31.
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2018.
Riffle-pool maintenance and flow convergence routing confirmed on a large gravel bed river. Geomorphology. 114(3):143-160.
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2010.
Rice responses to soil management in rice-based cropping system in the semi-arid tropics of southern Lombok, Eastern Indonesia. Field Crops Research. 110:197-206. Abstract
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2009.
Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature Communications. 9:ArticleNo.1408.
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2018.
Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature Communications. 9:ArticleNo.1408.
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2018.
Ribosomal and mitochondrial DNA analyses of Xiphinema americanum-group populations. Journal of Nematology. 38:404-410. Abstract
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2006.
riboSeed: leveraging prokaryotic genomic architecture to assemble across ribosomal regions. Nucleic Acids Research. :ArticleNo.gky212.
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2018.
Rhynchosporium leaf scald disease incidence: seed source and spatial pattern. Plant Pathology. 68:1179-1187.
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2019.
Rhynchosporium commune: a persistent threat to barley cultivation. Molecular Plant Pathology. 13:986-997.
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2012.
Rhizosphere: biophysics, biogeochemistry and ecological relevance. Plant and Soil. 321:117-152.
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2009.
Rhizosphere-scale quantification of hydraulic and mechanical properties of soil impacted by root and seed exudates. Vadose Zone Journal. 17:ArticleNo.170083..
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2018.
Rhizosphere geometry and heterogeneity arising from root-mediated physical and chemical processes. New Phytologist. 168:293-303. Abstract
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2005.
The Rhizosheath - A potential trait for future agricultural sustainability occurs in orders throughout the angiosperms. Plant and Soil. Published online..
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2017.
The Rhizosheath - a potential trait for future agricultural sustainability occurs in orders throughout the angiosperms. Plant and Soil. 418:115-128.
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2017.
Rhizodeposition shapes rhizosphere microbial community structure in organic soil. New Phytologist. 173(3):600-610.
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2007.
Rhizobium altiplani sp. nov. isolated from effective nodules on Mimosa pudica growing in untypically alkaline soil in Central Brazil. International Journal of Systematic and Evolutionary Microbiology. 66:1-7.
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2016.
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2012.
Rhinanthus minor population genetic structure and subspecies: Potential seed sources of a keystone species in grassland restoration projects. Perspectives in Plant Ecology Evolution and Systematics. 14:423-433.
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2012.
Rheological stabilisation of wet soils by model root and fungal exudates depends on clay mineralogy. European Journal of Soil Science. 60:525-538. Abstract
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2009.
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2013.
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2016.
Revisiting the impact of order effects on sensitivity to scope: a contingent valuation of a common-pool resource. Journal of Agricultural Economics. 66:705-726.
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2015.
Revisiting the dietary niches: when is a mammalian herbivore a specialist? Integrative and Comparative Biology. 49(3):274-290.
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2009.
Revisiting herbage sample collection and preparation procedures to minimise risks of trace element contamination. European Journal of Agronomy. 43:33-39.
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2012.
Reviewing the carbon cycle dynamics and carbon sequestration potential of Cyperus papyrus L. wetlands in tropical Africa. Wetlands Ecology and Management. 22:143-155.
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2014.
Review: A mechanistic framework to improve understanding and applications of push-pull systems in pest management. Journal of Applied Ecology. 53:202-212.
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2015.
Review: A mechanistic framework to improve understanding and applications of push-pull systems in pest management. Journal of Applied Ecology. 53:202-212.
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2016.
Review on ultrasound assisted persulfate degradation of organic contaminants in wastewater: Influences, mechanisms and prospective. Chemical Engineering Journal. 378:ArticleNo.UNSP122146.
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2019.
A review on cost-effectiveness analysis of agri-environmental measures related to the EU WFD: Key issues, methods, and applications. Ecological Economics. 70:1021-1031.
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2011.
A review of the role of excess soil moisture conditions in constraining farm practices under Atlantic conditions. Soil Use and Management. 28:580-589.
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2012.
Review of the annual phosphorus loss estimator tool-a new model for estimating phosphorus losses at the field scale. Soil Use and Management. 30:337-341.
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2014.
A review of the abundance, behaviour and detection of clostridial pathogens in agricultural soils. European Journal of Soil Science. 70:911-929.
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2019.
A review of economic approaches modeling the complex interactions between forest management and watershed services. Forest Policy and Economics. 100:164-176.
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2019.
A review of biochars' potential role in the remediation, revegetation and restoration of contaminated soils. Environmental Pollution. 159:3269-3282.
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2011.
Review and analysis of limitations in ways to improve conventional potato breeding. Potato Research. 60:171-193.
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2017.
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2018.
Reversible jump markov chain Monte Carlo methods and segmentation algorithms in hidden Markov models. Australian & New Zealand Journal of Statistics. 52:151-166.
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2010.
Reversible jump and the label switching problem in hidden Markov models. Journal of Statistical Planning and Inference. 139:2305-2315.
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2009.
Revealing ecological networks using Bayesian network inference algorithms. Ecology. 91(7):1892-1899.
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2010.
Returning a lost process by reintroducing a locally extinct digging marsupial. PeerJ. 7:ArticleNo.e662.
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2019.
Return of the gentleman farmer?: conceptualising gentrification in UK agriculture Journal of Rural Studies. 28:568-576.
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2012.
Retrotransposon populations of Vicia species with varying genome size. Molecular Genetics and Genomics. 273:371-381. Abstract
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2005.
The resurgence of haploids in higher plants. Trends in Plant Science. 12:368-375. Abstract
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2007.
Results of the 3rd Reynolds Cup contest in quantitative mineral analysis. Clays and Clay Minerals. 54(6):748-760.
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2006.
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2011.
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2016.
Restoration trajectory of carabid functional traits in a formerly afforested blanket bog. Acta Zoologica Academiaea Scientiarum Hungaricae. 65:33-56.
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2019.
Restoration of upland heath from a graminoid- to a Calluna vulgaris-dominated community provides a carbon benefit. Agriculture, Ecosystems and Environment. 185:133-143.
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2014.
Restoration of soil physical and biological stability are not coupled in response to plants and earthworms. Ecological Restoration. 26:102-104. Abstract
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2008.
Restoration of Skjern River and its valley: short-term effects on river habitats, macrophytes and macroinvertebrates. Ecological Engineering. 30(2):145-156.
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2007.
Restoration of a gauging weir to aid fish passage. Journal of Hydro-Environment Research. 8:43-49.
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2014.
A restoration experiment on moorland infested by Pterdium aquilinum: Plant species responses. Agriculture, Ecosystems and Environment. 119(1-2):53-59.
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2007.
Responses of red deer (Cervus elaphus) to regular disturbance by hill walkers. European Journal of Wildlife Research. 57:817-825.
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2011.
Responses of plant traits of four grasses from contrasting habitats to defoliation and N supply. Nutrient Cycling in Agroecosystems. 88(2):245-258.
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2010.
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2015.
Responses of cattle to gastrointestinal colonization by Escherichia coli O157:H7. Infection and Immunity. 76:5366-5372. Abstract
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2008.
Responses in whole-body amino acid kinetics to an acute, sub-clinical endotoxin challenge in lambs. British Journal of Nutrition. 115:576-584.
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2016.
Responses in gut hormones and hunger to diets with either high protein or a mixture of protein plus free amino acids supplied under weight-loss conditions. British Journal of Nutrition. 113:1254-1270.
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2015.
Responses by earthworms to reduced tillage in herbicide tolerant maize and Bt maize cropping systems. Pedobiologia. 51:219-227. Abstract
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2007.
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2017.
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2017.
Response to soil biota by native, introduced non-pest, and pest grass species: is responsiveness a mechanism for invasion? Biological Invasions. 15:1343-1353.
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2013.
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2016.
Response to Kruse-Plass et al. (2017) regarding the risk to non-target lepidopteran larvae exposed to pollen from one or more of three Bt maize events (MON810, Bt11 and 1507). Environmental Sciences Europe. 29:ArticleNo.21.
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2017.
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2015.
Response to comment on 'Phytoplankton calcification in a high CO2 world'. Science. 322:-1466.
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2008.
Response to Andrews et al.: Correlations and causality. Trends in Plant Science. 12:532-533. Abstract
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2007.
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2015.
Response of the moss Racomitrium lanuginosum to changes in sheep grazing and snow-lie due to a snow-fence. Applied Vegetation Science. 10:229-238. Abstract
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2007.
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2011.
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2011.
The response of process-based agro-ecosystem models to within-field variability in site conditions. Field Crops Research. 228:1-19.
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2018.
The response of plant and insect assemblages to the loss of Calluna vulgaris from upland vegetation. Biological Conservation. 128(3):335-345.
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2006.
Response of photosynthetic apparatus to moderate high temperature in contrasting wheat cultivars at different oxygen concentrations. Journal of Experimental Botany. 58:2133-2143. Abstract
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2007.
The response of organic matter mineralisation to nutrient and substrate additions in subarctic soils. Soil Biology & Biochemistry. 42:92-100.
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2010.
The response of organic matter mineralisation to nutrient and substrate additions in sub-arctic soils. Soil Biology and Biochemistry. 42(1):92-100.
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2010.
Response of methanotrophic communities to afforestation and reforestation in New Zealand. ISME Journal. 5:1832-1836.
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2011.
Response of lightning NOx emissions and ozone production to climate change: Insights from the Atmospheric Chemistry and Climate Model Intercomparison Project. Geophysical Research Letters. 43:5492-5500.
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2016.
Response of fungal, bacterial and ureolytic communities to synthetic sheep urine deposition in a grassland soil. FEMS Microbiology Ecology. 70(1):109-117.
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2009.
Response of ectomycorrhizal extramatrical mycelium production and isotopic composition to in-growth bag size and soil fauna. Soil Biology and Biochemistry. 66:154-162.
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2013.
The response of alpine Salix shrubs to long-term experimental browsing varies with elevation and herbivore density. Arctic Antarctic and Alpine Research. 45:584-593.
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2013.
Responding to the Kyoto Protocol through forestry: a comparison of opportunities for several countries in Europe. Forest Policy and Economics. 10(4):257-269.
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2008.
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2019.
Respiration (CO2 flux) from urban and pen-urban soils amended with green waste compost. Geoderma. 223:68-72.
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2014.
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2015.
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2012.
Resource quality affects carbon cycling in deep-sea sediments. ISME Journal. 6:1740-1748.
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2012.
Resource limitations on soil microbial activity in an Antarctic dry valley. Soil Science Society of America Journal. 75:2188-2197.
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2011.
Resistance, epidemiology and sustainable management of Rhynchosporium secalis populations on barley. Plant Pathology. 57:1-14. Abstract
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2008.
Resistance to Rhynchosporium commune in a collection of European spring barley germplasm. Theoretical and Applied Genetics. 131:2513-2528.
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2018.
Resistance to powdery mildew in Spanish barley landraces is controlled by different sets of quantitative trait loci. Theoretical and Applied Genetics. 123:1019-1028.
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2011.
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2007.
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2011.
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2021.
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2008.
Resistance of simple plant root systems to uplift loads. Canadian Geotechnical Journal. 47:78-95. Abstract
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2010.
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2013.
Resilience, panarchy and world-systems analysis. Ecology and Society. 12(1):24.
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2007.
Resilience of microorganisms and aggregation of a sandy calcareous soil to amendment with organic and synthetic fertilizer. Soil Use and Management. 26:149-157.
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2010.
Reservoir sedimentation and its mitigating strategies: a case study of Angereb reservoir (NW Ethiopia). Journal of Soil and Sediments. 12:291-305.
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2012.
Research priorities for harnessing plant microbiomes in sustainable agriculture. PLoS Biology. 15:ArticeleNo.e2001793.
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2017.
Research Comment: Best practice for the design and statistical analysis of animal studies. Veterinary Record. 186:59-64.
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2020.
Reproductive performance of asexual clones of the peach-potato aphid (Myzus persicae, Homoptera: Aphididae) colonising Scotland in relation to host plant and field ecology. Bulletin of Entomological Research. 100:451-460.
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2010.
.
2021.
Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.
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2010.
Reproducibility of species lists, visual cover estimates and frequency methods for recording high-mountain vegetation. Journal of Vegetation Science. 21:1035-1047.
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2010.
Representing natural and artificial in-channel large wood in numerical hydraulic and hydrological models. Wiley Interdisciplinary Reviews - Water. 6:ArticleNo.e1389.
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2019.
Representation of decision-making in European agricultural agent-based models. Agricultural Systems. 167:143-160.
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2018.
Reply to comment on: Vegetation burning for game management in the UK uplands is increasing and overlaps spatially with soil carbon and protected areas. Biological Conservation. 195:295-296.
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2016.
Reply to comment on 'Multi-element' signatures of stream sediments and their sources under moderate to low flow conditions. Applied Geochemistry. 25(10):1617-1619.
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2010.
Reply to Byrnes et al.: Aggregation can obscure understanding of ecosystem multifunctionality. Proceedings of the National Academy of Sciences of the United States of America. 111:E5491-E5491.
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2014.
Replication and trafficking of a plant virus are coupled at the entrances of plasmodesmata. Journal of Cell Biology. 201:981-995.
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2013.
Replacement of amino acid in the ORF6 protein of tobacco mosaic virus prevents the formation of a complex with eEF1A and the cooperative binding to nucleic acids in vitro. Proceedings of the Russian Academy of Sciences. 448:1-5.
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2013.
Repeated application of diluted olive mill wastewater induces changes in the structure of the soil microbial community. European Journal of Soil Biology. 46(1):34-40.
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2010.
Removal and attenuation of sewage effluent combined tracer signals of phosphorus, caffeine and saccharin in soil. Environmental Pollution. 223:277-285.
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2017.
A remote sensing-based approach to management zone delineation in small scale farming systems. Agronomy. 10:ArticleNo.1767.
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2020.
Remote sensing of plant stresses and its use in irrigation management. Acta Horticulturae. 1038:239-247.
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2014.
Remobilization of acorn nitrogen for seedling growth in holm oak (Quercus ilex), cultivated with contrasting nutrient availability. Tree Physiology.. 30(2):257-263.
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2010.
REMA: A computer-based mapping tool for analysis of restriction sites in multiple DNA sequences. Journal of Microbiological Methods. 69(2):411-413.
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2007.
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2011.
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2012.
Reliable quantification of N-2 fixation by non-legumes remains problematic. Nutrient Cycling in Agroecosystems. Published online..
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2020.
Relative quantitative kinetics of interferon-gamma and interleukin-10 mRNA and protein production by activated ovine peripheral blood mononuclear cells. Veterinary Immunology and Immunopathology. 136:34-42.
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2010.
The relative performance of AIC, AIC(C) and BIC in the presence of unobserved heterogeneity. Methods in Ecology and Evolution.
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2016.
Relative importance of seed-tuber and soilborne inoculum in causing black dot disease of potato. Plant Pathology. 59:693-702.
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2010.
The relative importance of seed- and soil-borne inoculum of Rhizoctonia solani AG-3 in causing black scurf on potato. Potato Research. 59:181-193.
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2016.
The relative importance of nitrogen deposition as a driver of Racomitrium heath species composition and richness across Europe. Biological Conservation. 171:224-231.
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2014.
Relative importance of local- and large-scale drivers of alpine soil microarthropod communities. Oecologia. 182:913-924.
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2016.
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2012.
Relative climatic, edaphic and management controls of plant functional trait signatures. Journal of Vegetation Science. 20(1):148-159.
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2009.
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2017.
Relationships between yield and mineral concentrations in potato tubers. Hortscience. 44:6-11. Abstract
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2009.
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2005.
Relationships between volatile and non-volatile metabolites and attributes of processed potato flavour. Phytochemistry. 71:1765-1773.
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2010.
Relationships between understory specialist species and local management practices in coppiced forests - evidence from the Italian Apennines. Forest Ecology and Management. 385:35-45.
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2017.
Relationships between structure and function in streams contrasting in temperature: possible impacts of climate change on running water ecosystems. Freshwater Biology. 54(10):2051-2068.
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2009.
Relationships between soil physicochemical, microbiological properties, and nutrient release in buffer soils compared to field soils. Journal of Environmental Quality. 41:400-409.
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2012.
Relationships between native small mammals and native and introduced large herbivores. Austral Ecology. 39:236-243.
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2014.
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2008.
Relationships between climate, water resources, land use and diffuse pollution and the significance of uncertainty in climate change. Journal of Hydrology. 434:19-35.
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2012.
The relationship between water-soluble P and modified Morgan P: results based on data and chemical modelling. Soil Use and Management. 32:162-171.
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2016.
The relationship between water extractable P and modified Morgan P: results based on data and chemical modelling. Soil Use and Management. 32:162-171.
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2016.
Relationship between volative profile and sensory development of an oat based biscuit. Food Chemistry. 160:72-81.
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2014.
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2013.
The relationship between soil water storage capacity and plant species diversity in high alpine vegetation. Plant Ecology and Diversity. 6:457-466.
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2013.
The relationship between soil inoculum and the development of Fusarium dry rot in potato cultivars Asterix and Saturna. European Journal of Plant Pathology. 146:711-714.
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2014.
Relationship between pro-environmental attitudes and behaviour and dietary intake patterns. Sustainable Production and Consumption. 16:216-226.
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2018.
.
2011.
The relationship between forest cover and diet quality: a case study of rural southern Malawi. Food Security. 11:635-650.
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2019.
.
2010.
Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10:534-541. Abstract
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2008.
Relationship between assemblages of mycorrhizal fungi and bacteria on grass roots. Environmental Microbiology. 10(2):534-541.
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2008.
Relations between the oilseed rape volunteer seedbank, and soil factors, weed functional groups and geographical location in the UK. Ecological Modelling. 212:138-146. Abstract
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2008.
Rejoinder to Comments on Minasny et al., 2017 Soil carbon 4 per mille. Geoderma, 292, 59-86. Geoderma. 309:124-129.
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2018.
Rejoinder to Comments on Minasny et al., 2017 Soil carbon 4 per mille. Geoderma, 292, 59-86. Geoderma. 309:124-129.
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2018.
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2012.
Reinforcement learning dynamics in social dilemmas. Journal of Artificial Societies and Social Simulation.. 11(2.1)
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2008.
Regulon studies and in planta role of the BraI/R quorum-sensing system in the plant-beneficial Burkholderia cluster. Applied and Environmental Microbiology. 79:4421-4432.
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2013.
Regulatory hotspots are associated with plant gene expression under varying soil phosphorus supply in Brassica rapa. Plant Physiology. 156:1230-1241.
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2011.
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2013.
Regulation of plant gene expression by alternative splicing. Biochemical Society Transactions. 38:667-671.
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2010.
Regulation of inorganic carbon acquisition by phosphorus limitation in the green alga Chorella emersonii. Canadian Journal of Botany - Review Canadienne de Botanique. 83:859-864. Abstract
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2005.
Regulation of hepatic glucose production and AMPK by AICAR but not by metformin depends on drug uptake through the equilibrative nucleoside transporter 1 (ENT1). Diabetes, Obesity and Metabolism. 20:2748-2758.
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2018.
Regulated RNA processing in the control of Arabidopsis flowering. International Journal of Developmental Biology. 49:773-780.
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2005.
Regular crabmeat consumers do not show increased urinary cadmium or beta-2-microglobulin levels compared to non-crabmeat consumers. Journal of Trace Elements in Medicine and Biology. 52:22-28.
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2019.
Regular crabmeat consumers do not show increased urinary cadmium or beta-2-microglobulin levels compared to non-crabmeat consumers. Journal of Trace Elements in Medicine and Biology. 52:22-28.
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2019.
Regression analysis of spatial data. Ecology Letters. 13:246-264.
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2010.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
Regression analysis of spatial data. Ecology Letters. 13(2):246-264.
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2010.
Regional-scale alteration of clear-cut forest regeneration caused by moose browsing. Forest Ecology and Management. 289:289-299.
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2013.
Regional variation in potential groundwater recharge from spring barley crop fields in the UK under projected climate change. Groundwater for Sustainable Development. 8:332-345.
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2019.
Regional trends in Scottish advisory soil acidity and phosphorus results: significance of management history, land use and soil attributes. Soil Use and Management. 32:44-53.
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2016.
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2013.
Regional scale gradients of climate and nitrogen deposition drive variation in ectomycorrhizal fungal communities associated with native Scots pine. Global Change Biology. 19:1688-1696.
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2013.
Regional land use efficiency and nutritional quality of protein production. Global Food Security. 26:ArticleNo.100386..
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2020.
Regime shifts in coupled socio-environmental systems: review of modelling challenges and approaches. Environmental Modelling and Software. 75:333-347.
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2016.
Regeneration of Salix arbuscula and Salix lapponum within a large mammal exclosure: the impacts of microsite and herbivory. Restoration Ecology. 18(Suppl. 1):1-9.
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2010.